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A

A - Variable in class ptolemy.actor.lib.LinearDifferenceEquationSystem
The A matrix in the state-space representation.
A - Variable in class ptolemy.actor.lib.tutorial.SimpleALU
Input port for the first operand.
A - Variable in class ptolemy.actor.lib.tutorial.StaticALU
Input port for the first operand.
A - Variable in class ptolemy.domains.continuous.lib.LinearStateSpace
The A matrix in the state-space representation.
abbreviate(String) - Static method in class ptolemy.util.StringUtilities
Abbreviate a string.
abbreviation() - Method in class com.jgoodies.forms.layout.CellConstraints.Alignment
Returns the first character of this Alignment's name.
abbreviation() - Method in class com.jgoodies.forms.layout.ConstantSize.Unit
Returns the first character of this Unit's name.
abbreviation() - Method in class com.jgoodies.forms.layout.FormSpec.DefaultAlignment
Returns the first character of this Alignment's name.
abortTask(TaskAttemptContext) - Method in class org.kepler.hadoop.io.output.TokenOutputFormat.TokenOutputCommitter
 
about(Configuration) - Static method in class ptolemy.actor.gui.HTMLAbout
Return a string containing HTML that describes the about: features.
about() - Method in class ptolemy.gui.Top
Open a dialog with basic information about this window.
AboutAction - Class in org.kepler.gui
This action imports a kar file to the system
AboutAction(TableauFrame) - Constructor for class org.kepler.gui.AboutAction
Constructor
aboutAllCopyrights() - Method in class ptolemy.actor.gui.test.junit.HTMLAboutJUnitTest
Invoke about:allcopyrights, which pops up a window that lists the copyrights.
aboutConfiguration() - Method in class ptolemy.actor.gui.test.junit.HTMLAboutJUnitTest
Invoke about:configuration, which expands the actor tree on the left.
aboutCopyrights() - Method in class ptolemy.actor.gui.test.junit.HTMLAboutJUnitTest
Invoke about:copyrights, which pops up a window that lists the copyrights.
aboutFile - Variable in class ptolemy.actor.gui.TableauFrame
The name of the default file to open when About is invoked.
above - Variable in class ptolemy.actor.lib.ArrayLevelCrossing
An indicator of whether to look for values above or below the specified threshold.
abs(Complex) - Static method in class ptolemy.math.Complex
Return the magnitude or absolute value of the specified complex number.
abs() - Method in class ptolemy.math.FixPoint
Return a FixPoint with a value equal to the absolute value of this FixPoint.
ABSENT - Static variable in class ptolemy.data.AbsentToken
An instance of an absent token.
AbsentToken - Class in ptolemy.data
A placeholder token that represents the absence of a token.
AbsentToken() - Constructor for class ptolemy.data.AbsentToken
Construct a token with value false.
absFilename - Variable in class org.nees.CreateUniqueFile
If true, the output a full path instead of just the file name.
absolute() - Method in class ptolemy.data.ScalarToken
Return a ScalarToken containing the absolute value of the value of this token.
AbsoluteValue - Class in ptolemy.actor.lib
Produce an output token on each firing with a value that is equal to the absolute value of the input.
AbsoluteValue(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.AbsoluteValue
Construct an actor with the given container and name.
AbstractActionsAttribute - Class in ptolemy.domains.modal.kernel
A base class for actions with semicolon delimited lists of commands.
AbstractActionsAttribute(NamedObj, String) - Constructor for class ptolemy.domains.modal.kernel.AbstractActionsAttribute
Construct an action with the given name contained by the specified container (which should be a Transition when used in the FSM domain, and an Event in the Ptera domain).
AbstractActionsAttribute(Workspace) - Constructor for class ptolemy.domains.modal.kernel.AbstractActionsAttribute
Construct an action in the specified workspace with an empty string as a name.
AbstractApp - Class in org.kepler.webview.server.app
Base class for App.
AbstractApp() - Constructor for class org.kepler.webview.server.app.AbstractApp
 
AbstractBasicGraphModel - Class in ptolemy.vergil.basic
This base class provides some common services for visual notations for Ptolemy II models.
AbstractBasicGraphModel(NamedObj) - Constructor for class ptolemy.vergil.basic.AbstractBasicGraphModel
Create a graph model for the specified Ptolemy II model.
AbstractConfigBuilder(Configuration) - Constructor for class org.kepler.stratosphere.io.output.TokenOutputFormat.AbstractConfigBuilder
Creates a new builder for the given configuration.
AbstractConvertibleToken - Class in ptolemy.data
The Token base class provides a very general interface for building new data types.
AbstractConvertibleToken() - Constructor for class ptolemy.data.AbstractConvertibleToken
 
AbstractDialogTab - Class in org.kepler.gui
 
AbstractDialogTab(NamedObj, String, TableauFrame) - Constructor for class org.kepler.gui.AbstractDialogTab
Construct a new instance of this object - to be called from implementing class like this: public MyImplementationNameHere(NamedObj target) { super(target); }
AbstractFormBuilder - Class in com.jgoodies.forms.builder
An abstract class that minimizes the effort required to implement non-visual builders that use the FormLayout.
AbstractFormBuilder(FormLayout, Container) - Constructor for class com.jgoodies.forms.builder.AbstractFormBuilder
Constructs an instance of AbstractFormBuilder for the given FormLayout and layout container.
AbstractFormBuilder(Container, FormLayout) - Constructor for class com.jgoodies.forms.builder.AbstractFormBuilder
AbstractInitializableAttribute - Class in ptolemy.actor
An abstract base class for attributes that are preinitialized, initialized, and wrapped up during execution of a model.
AbstractInitializableAttribute(NamedObj, String) - Constructor for class ptolemy.actor.AbstractInitializableAttribute
Construct an instance of the attribute.
AbstractInitializableParameter - Class in ptolemy.data.expr
An abstract base class for parameters that are preinitialized, initialized, and wrapped up during execution of a model.
AbstractInitializableParameter(NamedObj, String) - Constructor for class ptolemy.data.expr.AbstractInitializableParameter
Construct an instance of the attribute.
AbstractLayoutConfiguration - Class in ptolemy.vergil.basic.layout
An attribute for parameters of automatic layout.
AbstractLayoutConfiguration(NamedObj, String) - Constructor for class ptolemy.vergil.basic.layout.AbstractLayoutConfiguration
Create and initialize a layout configuration.
AbstractLayoutConfiguration.InteractionMode - Enum in ptolemy.vergil.basic.layout
Available modes of user interaction.
AbstractNotConvertibleToken - Class in ptolemy.data
The Token base class provides a very general interface for building new data types.
AbstractNotConvertibleToken() - Constructor for class ptolemy.data.AbstractNotConvertibleToken
 
AbstractObjectReader - Class in org.kepler.reporting.rio.fop.tools
This class can be used as base class for XMLReaders that generate SAX events from Java objects.
AbstractObjectReader() - Constructor for class org.kepler.reporting.rio.fop.tools.AbstractObjectReader
Constructor for the AbstractObjectReader object
AbstractParseTreeVisitor - Class in ptolemy.data.expr
This class implements a base class visitor for parse trees in the expression language.
AbstractParseTreeVisitor() - Constructor for class ptolemy.data.expr.AbstractParseTreeVisitor
 
AbstractPlaceableActor - Class in ptolemy.actor.gui
Base class for actors that implement the Placeable interface.
AbstractPlaceableActor(CompositeEntity, String) - Constructor for class ptolemy.actor.gui.AbstractPlaceableActor
Construct an actor with the specified container and name.
AbstractPlaceableJavaSE - Class in ptolemy.actor.gui
Base class for AWT and Swing implementation of actors the implement PortablePlaceable.
AbstractPlaceableJavaSE() - Constructor for class ptolemy.actor.gui.AbstractPlaceableJavaSE
 
AbstractPlaceableJavaSE.WindowClosingAdapter - Class in ptolemy.actor.gui
Listener for windowClosing action.
AbstractReceiver - Class in ptolemy.actor
An abstract implementation of the Receiver interface.
AbstractReceiver() - Constructor for class ptolemy.actor.AbstractReceiver
Construct an empty receiver with no container.
AbstractReceiver(IOPort) - Constructor for class ptolemy.actor.AbstractReceiver
Construct an empty receiver with the specified container.
AbstractSettableAttribute - Class in ptolemy.kernel.util
This is an abstract base class for attributes that implement the Settable interface.
AbstractSettableAttribute() - Constructor for class ptolemy.kernel.util.AbstractSettableAttribute
Construct an attribute in the default workspace with an empty string as its name.
AbstractSettableAttribute(Workspace) - Constructor for class ptolemy.kernel.util.AbstractSettableAttribute
Construct an attribute in the specified workspace with an empty string as a name.
AbstractSettableAttribute(NamedObj, String) - Constructor for class ptolemy.kernel.util.AbstractSettableAttribute
Construct an attribute with the given name contained by the specified entity.
AbstractSettableAttribute(NamedObj, String, boolean) - Constructor for class ptolemy.kernel.util.AbstractSettableAttribute
Construct an attribute with the given name contained by the specified entity.
AbstractTextAttribute - Class in ptolemy.vergil.kernel.attributes
An abstract base class for text annotations.
AbstractTextAttribute(NamedObj, String) - Constructor for class ptolemy.vergil.kernel.attributes.AbstractTextAttribute
Construct an attribute with the given name contained by the specified container.
AbstractUnitConverter - Class in com.jgoodies.forms.util
An abstract implementation of the UnitConverter interface that minimizes the effort required to convert font-dependent sizes to pixels.
AbstractUnitConverter() - Constructor for class com.jgoodies.forms.util.AbstractUnitConverter
 
accept(File) - Method in class org.ecoinformatics.seek.querybuilder.DBFileFilter
Return true if this file should be shown in the directory pane, false if it shouldn't.
accept(File, String) - Method in class org.kepler.util.FilenameFilter_RegularPattern
 
accept(File, String) - Method in class ptolemy.actor.lib.io.DirectoryListing
Return true if the specified name matches the specified pattern, or if no pattern has been specified.
accept(File) - Method in class ptolemy.gui.ExtensionFilenameFilter
Return true if the given file has one of the registered extensions, or is a directory.
accept(File, String) - Method in class ptolemy.gui.ExtensionFilenameFilter
Return true if the given file name has one of the registered extensions, or is a directory.
accept(File) - Method in class ptolemy.gui.PtFilenameFilter
Return true if the file is acceptable.
accept(File, String) - Method in class ptolemy.gui.PtFilenameFilter
Return true if the file is acceptable.
accept(File, String) - Method in class ptolemy.util.RecursiveFileFilter
Return whether the file or directory name in the given directory is accepted.
accept(File) - Method in class ptolemy.vergil.basic.BasicGraphFrame.FolderFileFilter
Accept only folders.
accept(Object) - Method in class ptolemy.vergil.basic.layout.kieler.KielerLayoutAction
Check whether the given model is supported by this layout action.
accept(MouseEvent) - Method in class ptolemy.vergil.basic.PopupMouseFilter
Test whether the given MouseEvent passes the filter.
accept2dArrays - Variable in class org.kepler.data.conversion.binary.EnsembleActor
 
acceptable(Settable) - Method in class ptolemy.actor.gui.style.CheckBoxStyle
Return true if this style is acceptable for the given parameter.
acceptable(Settable) - Method in class ptolemy.actor.gui.style.ChoiceStyle
Return true if this style is acceptable for the given attribute.
acceptable(Settable) - Method in class ptolemy.actor.gui.style.FileChooserStyle
Return true if this style is acceptable for the given parameter.
acceptable(Settable) - Method in class ptolemy.actor.gui.style.HiddenStyle
Return true if this style is acceptable for the given parameter.
acceptable(Settable) - Method in class ptolemy.actor.gui.style.LineStyle
Return true if this style is acceptable for the given parameter.
acceptable(Settable) - Method in class ptolemy.actor.gui.style.NotEditableLineStyle
Return true if this style is acceptable for the given parameter.
acceptable(Settable) - Method in class ptolemy.actor.gui.style.NoteStyle
Return true if this style is acceptable for the given parameter.
acceptable(Settable) - Method in class ptolemy.actor.gui.style.ParameterEditorStyle
Return true if this style is acceptable for the given parameter.
acceptable(Settable) - Method in class ptolemy.actor.gui.style.TextStyle
Return true if this style is acceptable for the given parameter.
acceptHead(Object, Object) - Method in class ptolemy.vergil.actor.ActorGraphModel.LinkModel
Return true if the head of the given edge can be attached to the given node.
acceptHead(Connector, Figure) - Method in class ptolemy.vergil.actor.LinkController.LinkTarget
Accept the head of the connector.
acceptHead(Object, Object) - Method in class ptolemy.vergil.modal.FSMGraphModel.ArcModel
Return true if the head of the given edge can be attached to the given node.
acceptHead(Connector, Figure) - Method in class ptolemy.vergil.modal.TransitionController.LinkTarget
 
acceptTail(Object, Object) - Method in class ptolemy.vergil.actor.ActorGraphModel.LinkModel
Return true if the tail of the given edge can be attached to the given node.
acceptTail(Connector, Figure) - Method in class ptolemy.vergil.actor.LinkController.LinkTarget
Accept the tail of the connector.
acceptTail(Object, Object) - Method in class ptolemy.vergil.modal.FSMGraphModel.ArcModel
Return true if the tail of the given edge can be attached to the given node.
acceptTail(Connector, Figure) - Method in class ptolemy.vergil.modal.TransitionController.LinkTarget
 
access() - Method in class ptolemy.kernel.util.test.AccessAction
 
Access() - Constructor for class ptolemy.vergil.kernel.AttributeController.Access
 
AccessAction - Class in ptolemy.kernel.util.test
 
AccessAction(Workspace, long, char, long, Object, List, String) - Constructor for class ptolemy.kernel.util.test.AccessAction
 
accessionNumberOriginal - Variable in class org.sdm.spa.actors.piw.viz.Sequence
 
AccessThread - Class in ptolemy.kernel.util.test
 
AccessThread(String, List, TestWorkspaceBase) - Constructor for class ptolemy.kernel.util.test.AccessThread
 
accumulate(String, Object) - Method in class org.json.JSONObject
Accumulate values under a key.
Accumulator - Class in ptolemy.actor.lib
Output the initial value plus the sum of all the inputs since the last time a true token was received at the reset port.
Accumulator(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Accumulator
Construct an actor with the given container and name.
acos() - Method in class ptolemy.math.Complex
Return the principal arc cosine of this complex number.
acos(Complex) - Static method in class ptolemy.math.Complex
Return the principal arc cosine of the specified complex number.
acosh() - Method in class ptolemy.math.Complex
Return the principal hyperbolic arc cosine of this complex number.
acosh(Complex) - Static method in class ptolemy.math.Complex
Return the principal hyperbolic arc cosine of the given complex number.
acosh(double) - Static method in class ptolemy.math.ExtendedMath
Return the inverse hyperbolic cosine of the argument.
action(Event, Object) - Method in class com.microstar.xml.demo.XmlApplet
React to a button press.
Action - Class in ptolemy.domains.modal.kernel
An Action is contained by a Transition in an FSMActor or an Event in an ERGController.
Action(Workspace) - Constructor for class ptolemy.domains.modal.kernel.Action
Construct an action in the specified workspace with an empty string as a name.
Action(NamedObj, String) - Constructor for class ptolemy.domains.modal.kernel.Action
Construct an action with the given name contained by the specified container.
Actionable - Interface in ptolemy.kernel.attributes
Interface for objects that have named actions.
ActionableEntry(Query, String, String, Actionable) - Constructor for class ptolemy.actor.gui.PtolemyQuery.ActionableEntry
Create a panel containing an entry box and a color chooser.
ActionGUIProperty - Class in ptolemy.actor.gui.properties
A GUI property that is associated with an action.
ActionGUIProperty(NamedObj, String) - Constructor for class ptolemy.actor.gui.properties.ActionGUIProperty
Construct a GUI property with the given name contained by the specified entity.
actionIsRunning() - Static method in class org.kepler.gui.TabbedLookInsideAction
Returns true if the action is being performed.
actionName() - Method in interface ptolemy.kernel.attributes.Actionable
Return the name of the action.
actionPerformed(ActionEvent) - Method in class org.ecoinformatics.seek.dataquery.HsqlDataQueryAction
This method will handle such staff: Load data into db(create text tables and set source file location to table) Run sql query against the db
actionPerformed(ActionEvent) - Method in class org.ecoinformatics.seek.ecogrid.AddServicesFromRegistrySearchAction
 
actionPerformed(ActionEvent) - Method in class org.ecoinformatics.seek.ecogrid.CancelSearchAction
Method to perform action
actionPerformed(ActionEvent) - Method in class org.ecoinformatics.seek.ecogrid.InitialRegistrySearchDialogAction
Method to performe the action - initialize a dialog box.
actionPerformed(ActionEvent) - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.GetMetadataAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.ecoinformatics.seek.ecogrid.SearchRegistryAction
Method do search
actionPerformed(ActionEvent) - Method in class org.ecoinformatics.seek.ecogrid.ServicesRefreshAction
Method to dispose the frame and save service list to configure file
actionPerformed(ActionEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelDeleteAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.ecoinformatics.seek.querybuilder.TableSchemaSelectionListener
Action reponse for the event: if seletion of ComboBox, change the tableView (JTable)'s model should be updated
actionPerformed(ActionEvent) - Method in class org.kepler.authentication.gui.DomainSelectionGUI
Event listener
actionPerformed(ActionEvent) - Method in class org.kepler.authentication.gui.GAMALoginGUI
Event listener
actionPerformed(ActionEvent) - Method in class org.kepler.authentication.gui.LDAPLoginGUI
Event listener
actionPerformed(ActionEvent) - Method in class org.kepler.cloudsharing.gui.CloudSharingConfigureAction
 
actionPerformed(ActionEvent) - Method in class org.kepler.cloudsharing.gui.ShareResultsToCloudDialog
 
actionPerformed(ActionEvent) - Method in class org.kepler.gui.AboutAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.kepler.gui.ActorDialogAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.kepler.gui.AuthenticateAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.kepler.gui.component.OpenCompositeAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.kepler.gui.component.SearchConfigurationFrame
 
actionPerformed(ActionEvent) - Method in class org.kepler.gui.component.ToggleLsidAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.kepler.gui.ComponentLibraryTab.LibraryActionHandler
Description of the Method
actionPerformed(ActionEvent) - Method in class org.kepler.gui.ComponentLibraryTab.OntSelectActionHandler
 
actionPerformed(ActionEvent) - Method in class org.kepler.gui.ComponentLibraryTab.SearchButtonActionHandler
Description of the Method
actionPerformed(ActionEvent) - Method in class org.kepler.gui.ConfigureNamedObjAction
Open a dialog to edit the target.
actionPerformed(ActionEvent) - Method in class org.kepler.gui.CookbookAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.kepler.gui.DisplayWorkflowSizeStatisticsAction
 
actionPerformed(ActionEvent) - Method in class org.kepler.gui.frame.MultiCompositeTableau.AddRefinementAction
Perform the action.
actionPerformed(ActionEvent) - Method in class org.kepler.gui.frame.MultiCompositeTableau.RemoveRefinementAction
Perform the action.
actionPerformed(ActionEvent) - Method in class org.kepler.gui.kar.ActorUploaderAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.kepler.gui.kar.DeleteArchiveAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.kepler.gui.kar.DownloadKARFileAction
 
actionPerformed(ActionEvent) - Method in class org.kepler.gui.kar.ExportArchiveAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.kepler.gui.kar.ImportModuleDependenciesAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.kepler.gui.kar.KarManifestViewer
 
actionPerformed(ActionEvent) - Method in class org.kepler.gui.kar.KARPreferencesTab
 
actionPerformed(ActionEvent) - Method in class org.kepler.gui.kar.KarUploaderAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.kepler.gui.kar.OpenArchiveAction
Attempt to open the KAR.
actionPerformed(ActionEvent) - Method in class org.kepler.gui.kar.RefreshFolderAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.kepler.gui.kar.SaveArchiveAction
 
actionPerformed(ActionEvent) - Method in class org.kepler.gui.kar.ViewManifestAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.kepler.gui.LoadParametersAction
 
actionPerformed(ActionEvent) - Method in class org.kepler.gui.lsid.LibLsidViewerAction
 
actionPerformed(ActionEvent) - Method in class org.kepler.gui.lsid.LSIDViewer
 
actionPerformed(ActionEvent) - Method in class org.kepler.gui.lsid.LSIDViewerAction
 
actionPerformed(ActionEvent) - Method in class org.kepler.gui.memory.JvmMemoryDialogAction
 
actionPerformed(ActionEvent) - Method in class org.kepler.gui.PreferencesAction
 
actionPerformed(ActionEvent) - Method in class org.kepler.gui.PreferencesFrame
 
actionPerformed(ActionEvent) - Method in class org.kepler.gui.PreviewActorAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.kepler.gui.RemoveActorAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.kepler.gui.RemoveComponentAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.kepler.gui.RemoveCustomKeplerDocumentationAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.kepler.gui.RenameComponentEntityAction
 
actionPerformed(ActionEvent) - Method in class org.kepler.gui.RunWithFeedbackChkBoxAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.kepler.gui.SemanticSearchDialogAction
 
actionPerformed(ActionEvent) - Method in class org.kepler.gui.ShowDocumentationAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.kepler.gui.TabbedCompositeTabComponent
 
actionPerformed(ActionEvent) - Method in class org.kepler.gui.TabbedLookInsideAction
Execute the look inside action command received from the event sent from the user interface.
actionPerformed(ActionEvent) - Method in class org.kepler.gui.ToggleAllPortNamesAction
 
actionPerformed(ActionEvent) - Method in class org.kepler.gui.WorkflowTypeCheckerDialogAction
 
actionPerformed(ActionEvent) - Method in class org.kepler.modulemanager.gui.ModuleManagerAction
 
actionPerformed(ActionEvent) - Method in class org.kepler.modulemanager.ModuleDocumentationManagerAction
 
actionPerformed(ActionEvent) - Method in class org.kepler.objectmanager.data.DataSourceInstanceController.GetDSDocumentationAction
 
actionPerformed(ActionEvent) - Method in class org.kepler.plotting.DataTable
 
actionPerformed(ActionEvent) - Method in class org.kepler.provenance.gui.ProvenanceConfigureAction
 
actionPerformed(ActionEvent) - Method in class org.kepler.reporting.gui.PropertiesPanel
 
actionPerformed(ActionEvent) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
 
actionPerformed(ActionEvent) - Method in class org.kepler.sms.actors.MergeActor.MergeActorAction1
 
actionPerformed(ActionEvent) - Method in class org.kepler.sms.actors.MergeActor.MergeActorAction2
 
actionPerformed(ActionEvent) - Method in class org.kepler.sms.gui.AnnotateComponentAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.kepler.sms.gui.SuggestCompatibleInputAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.kepler.sms.gui.SuggestCompatibleOutputAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.kepler.sms.gui.SuggestSimilarComponentsAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.kepler.tagging.gui.OntologyDisplayUI
 
actionPerformed(ActionEvent) - Method in class org.kepler.tagging.gui.OntologyEditorUI
React to button actions
actionPerformed(ActionEvent) - Method in class org.kepler.tagging.gui.TagAddAction
 
actionPerformed(ActionEvent) - Method in class org.kepler.tagging.gui.TagManagerUI
 
actionPerformed(ActionEvent) - Method in class org.kepler.tagging.TagManagerAction
 
actionPerformed(ActionEvent) - Method in class org.kepler.workflowrunmanager.gui.kar.ExportRunsArchiveAction
Invoked when an action occurs.
actionPerformed(ActionEvent) - Method in class org.kepler.workflowrunmanager.gui.WorkflowRunManagerPanel
 
actionPerformed(ActionEvent) - Method in class org.kepler.workflowscheduler.gui.configurationwizard.OpenWorkflowRunEngineConfigDialogAction
Open a workflow run engine configuration dialog box
actionPerformed(ActionEvent) - Method in class org.kepler.workflowscheduler.gui.configurationwizard.OpenWorkflowSchedulerURLConfigDialogAction
Open a workflow scheduler dialog box
actionPerformed(ActionEvent) - Method in class org.kepler.workflowscheduler.gui.IntervalUnitComboBoxAction
The action will generate the new interval unit
actionPerformed(ActionEvent) - Method in class org.kepler.workflowscheduler.gui.OpenWorkflowSchedulerDialogAction
Open a workflow scheduler dialog box
actionPerformed(ActionEvent) - Method in class org.kepler.workflowscheduler.gui.SchedulerAbstractAction
Perform an action to a workflow
actionPerformed(ActionEvent) - Method in class ptolemy.actor.gui.PlotTableauFrame.ExportImageAction
Export an image.
actionPerformed(ActionEvent) - Method in class ptolemy.actor.gui.PtolemyDialog
If the action event is a JButton, process the button press.
actionPerformed(ActionEvent) - Method in class ptolemy.actor.gui.PtolemyQuery.ActionableEntry
Perform the specified action.
actionPerformed(ActionEvent) - Method in class ptolemy.actor.gui.PtolemyQuery.HierarchicalConfigurer
 
actionPerformed(ActionEvent) - Method in class ptolemy.actor.gui.run.CustomizableRunFrame.CustomizeMenuListener
 
actionPerformed(ActionEvent) - Method in class ptolemy.actor.gui.RunTableau.RunFrame.DebugMenuListener
 
actionPerformed(ActionEvent) - Method in class ptolemy.actor.gui.TableauFrame.MenuItemListener
 
actionPerformed(ActionEvent) - Method in class ptolemy.actor.gui.TextEditor.ExportImageAction
Export an image.
actionPerformed(ActionEvent) - Method in class ptolemy.gui.Query.QueryActionListener
Call all registered QueryListeners.
actionPerformed(ActionEvent) - Method in class ptolemy.gui.Query.QueryColorChooser
 
actionPerformed(ActionEvent) - Method in class ptolemy.gui.Query.QueryFileChooser
Create a file browser dialog and get the user input.
actionPerformed(ActionEvent) - Method in class ptolemy.gui.UndoListener.RedoAction
 
actionPerformed(ActionEvent) - Method in class ptolemy.gui.UndoListener.UndoAction
 
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.actor.ActorController.ListenToActorAction
Perform the action.
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.actor.ActorEditorGraphController.NewRelationAction
 
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.actor.ActorGraphFrame.DebugMenuListener
React to a menu command.
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.actor.ActorGraphFrame.InstantiateAttributeAction
Instantiate a class by first opening a dialog to get a class name and then issuing a change request.
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.actor.ActorGraphFrame.InstantiateEntityAction
Instantiate a class by first opening a dialog to get a class name and then issuing a change request.
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.basic.BasicGraphController.OpenBaseClassAction
Open the base class of a subclass or the class of an instance.
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.basic.BasicGraphController.UnitSolverDialogAction
Construct a UnitSolverDialog.
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.basic.BasicGraphFrame.CopyAction
Copy the current selection.
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.basic.BasicGraphFrame.CutAction
Copy and delete the current selection.
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.basic.BasicGraphFrame.EditPreferencesAction
 
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.basic.BasicGraphFrame.ExportImageAction
Export an image.
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.basic.BasicGraphFrame.FindAction
Open a dialog to find the specified text.
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.basic.BasicGraphFrame.MoveToBackAction
 
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.basic.BasicGraphFrame.MoveToFrontAction
 
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.basic.BasicGraphFrame.PasteAction
Paste the current contents of the clipboard into the current model.
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.basic.CustomizeDocumentationAction
Perform the action by first ensuring that the target has an instance of DocAttribute, and then opening an edit parameters dialog on that attribute.
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.basic.export.html.ExportHTMLAction
Export a web page.
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.basic.ExtendedGraphFrame.FullScreenAction
If we are in full-screen mode, then revert; otherwise, go to full-screen mode.
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.basic.GetDocumentationAction
Perform the action by opening documentation for the target.
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.basic.LookInsideAction
Execute the look inside action command received from the event sent from the user interface.
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.basic.RemoveCustomDocumentationAction
Perform the action by issuing a change request to remove the the first (and only?)
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.basic.WithIconGraphController.NewPortAction
Create a new port.
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.kernel.ListenToAction
Open a TextEffigy that displays debug messages.
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.kernel.PortDialogAction
Open a dialog to rename the target.
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.kernel.RenameDialogAction
Open a dialog to rename the target.
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.modal.CaseGraphFrame.AddCaseAction
Perform the action.
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.modal.CaseGraphFrame.RemoveCaseAction
Perform the action.
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.modal.FSMGraphController.NewStateAction
Execute the action.
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.modal.FSMGraphFrame
React to the actions specific to this FSM graph frame.
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.modal.FSMGraphFrame.DebugMenuListener
React to a menu command.
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.modal.ia.InterfaceAutomatonGraphController.ComposeWithAction
Compose with another interface automaton by first opening a file chooser dialog and then composing with the specified model.
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.modal.modal.HierarchicalStateController.AddRefinementAction
 
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.modal.modal.HierarchicalStateController.RemoveRefinementAction
 
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.modal.StateController.LookInsideAction
 
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.toolbox.ConfigureAction
Open a dialog to edit the target.
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.toolbox.EditIconAction
Process the edit icon command.
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.toolbox.FigureAction
Determine the target Ptolemy II object, the originating frame, and the X, Y position of the action, if possible.
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.toolbox.MoveAction
Perform the move action and register the undo action.
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.toolbox.RemoveIconAction
Process the remove icon command.
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.toolbox.RotateOrFlipPorts
Process the rotate command.
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.unit.ConfigureUnitsAction
Open a dialog to rename the target.
actionPerformed(ActionEvent) - Method in class ptolemy.vergil.unit.UnitSolverDialog
 
activate(String) - Method in class org.kepler.provenance.gui.DisabledGlassPane
 
activateBranches() - Method in class ptolemy.actor.process.BranchController
Activate the branches that are managed by this branch controller.
ActiveModulesDocumentationPanel - Class in org.kepler.modulemanager
Created by Debi Staggs to facilitate the viewing of the module documentation This will list only those active modules for which documentation has been installed.
ActiveModulesDocumentationPanel() - Constructor for class org.kepler.modulemanager.ActiveModulesDocumentationPanel
 
Actor - Interface in ptolemy.actor
An Actor is an executable entity.
actor - Variable in class ptolemy.actor.lib.hoc.ExecuteActor
Input port on which to receive an actor.
ACTOR - Static variable in class ptolemy.data.type.BaseType
The actor data type.
actor() - Method in class ptolemy.domains.de.kernel.DEEvent
Return the destination actor for this event.
ACTOR_METADATA - Static variable in class org.kepler.objectmanager.lsid.KeplerLSID
 
ACTOR_TARGET_TYPE - Static variable in class org.kepler.gui.AbstractDialogTab
 
ActorCacheObject - Class in org.kepler.objectmanager.cache
Modified by Dan Higgins, Aug 9, 2007 to avoid instantiating all the actors when the ActorCacheObject is created.
ActorCacheObject() - Constructor for class org.kepler.objectmanager.cache.ActorCacheObject
Constructor for the ActorCacheObject object
ActorCacheObject(String, KeplerLSID) - Constructor for class org.kepler.objectmanager.cache.ActorCacheObject
construct a new CacheObject
ActorCacheObject(InputStream) - Constructor for class org.kepler.objectmanager.cache.ActorCacheObject
create an ActorCacheObject from a stream
actorClassName - Variable in class org.kepler.scriptengine.ScriptEngineActor
The name of the class in the script defining the execution methods.
ActorController - Class in ptolemy.vergil.actor
This class provides interaction with nodes that represent Ptolemy II entities.
ActorController(GraphController) - Constructor for class ptolemy.vergil.actor.ActorController
Create an entity controller associated with the specified graph controller with full access.
ActorController(GraphController, AttributeController.Access) - Constructor for class ptolemy.vergil.actor.ActorController
Create an entity controller associated with the specified graph controller.
ActorController.ListenToActorAction - Class in ptolemy.vergil.actor
An action to listen to debug messages in the actor.
ActorDependencies - Class in ptolemy.actor.util
Utilities for data dependencies between actors.
ActorDialog - Class in org.kepler.gui
Actor tabbed dialog
ActorDialog(TableauFrame, NamedObj) - Constructor for class org.kepler.gui.ActorDialog
 
ActorDialogAction - Class in org.kepler.gui
This action opens the Actor Tabbed Dialog.
ActorDialogAction(TableauFrame) - Constructor for class org.kepler.gui.ActorDialogAction
Constructor
ActorEditorGraphController - Class in ptolemy.vergil.actor
A Graph Controller for the Ptolemy II schematic editor.
ActorEditorGraphController() - Constructor for class ptolemy.vergil.actor.ActorEditorGraphController
Create a new basic controller with default terminal and edge interactors.
ActorEditorGraphController.LinkCreator - Class in ptolemy.vergil.actor
This class is an interactor that interactively drags edges from one terminal to another, creating a link to connect them.
ActorEditorGraphController.NewRelationAction - Class in ptolemy.vergil.actor
An action to create a new relation.
ActorEditorGraphController.RelationCreator - Class in ptolemy.vergil.actor
An interactor for creating relations upon control clicking.
ActorEnablingStatus - Class in ptolemy.domains.ddf.kernel
A type-safe enumeration of actor enabling status.
ActorExecutionAspect - Interface in ptolemy.actor
An interface for objects that can intervene in the execution of actors.
actorFire(FiringEvent, Date) - Method in class org.kepler.profiling.gui.ExecutionMonitorPanel.ExecutionMonitorRecording
Record an actor firing.
actorFire(FiringEvent) - Method in class org.kepler.provenance.opm.OpenProvenanceModelXML
Deprecated.
Record an actor firing.
actorFire(FiringEvent, Date) - Method in class org.kepler.provenance.prov.ProvRecording
Record an actor firing.
actorFire(FiringEvent) - Method in class org.kepler.provenance.Recording
Record an actor firing at the current time.
actorFire(FiringEvent, Date) - Method in class org.kepler.provenance.Recording
Record an actor firing at a specific time.
actorFire(FiringEvent, Date) - Method in class org.kepler.provenance.sql.SQLRecording
Record an actor fire event.
actorFire(FiringEvent, Date) - Method in class org.kepler.provenance.TextFileRecording
Record starting an actor fire event.
actorFire(FiringEvent) - Method in class org.kepler.provenance.XMLRecording
Deprecated.
Record starting an actor fire event.
actorFire(FiringEvent, Date) - Method in class org.kepler.webview.provenance.WebViewRecording
 
ActorFireOutlineTabPane - Class in org.kepler.profiling.gui
A tab pane display an workflow outline of actor execution time.
ActorFireOutlineTabPane() - Constructor for class org.kepler.profiling.gui.ActorFireOutlineTabPane
 
ActorFireOutlineTabPane.Factory - Class in org.kepler.profiling.gui
 
ActorFiringListener - Interface in ptolemy.actor
A FiringEventListener listens for events that are issued during AtomicActor's iterations.
ActorGraphFrame - Class in ptolemy.vergil.actor
This is a graph editor frame for ptolemy models.
ActorGraphFrame(CompositeEntity, Tableau) - Constructor for class ptolemy.vergil.actor.ActorGraphFrame
Construct a frame associated with the specified Ptolemy II model.
ActorGraphFrame(CompositeEntity, Tableau, LibraryAttribute) - Constructor for class ptolemy.vergil.actor.ActorGraphFrame
Construct a frame associated with the specified Ptolemy II model.
ActorGraphFrame.DebugMenuListener - Class in ptolemy.vergil.actor
Listener for debug menu commands.
ActorGraphFrame.InstantiateAttributeAction - Class in ptolemy.vergil.actor
An action to instantiate an attribute given a class name.
ActorGraphFrame.InstantiateEntityAction - Class in ptolemy.vergil.actor
An action to instantiate an entity given a class name.
ActorGraphicalMessageHandler - Class in ptolemy.actor.gui
A message handler that optionally includes a button that opens the model that contains the actor that caused the exception.
ActorGraphicalMessageHandler() - Constructor for class ptolemy.actor.gui.ActorGraphicalMessageHandler
 
ActorGraphModel - Class in ptolemy.vergil.actor
This class represents one level of hierarchy of a Ptolemy II model.
ActorGraphModel(NamedObj) - Constructor for class ptolemy.vergil.actor.ActorGraphModel
Construct a new graph model whose root is the given composite entity.
ActorGraphModel.ExternalPortModel - Class in ptolemy.vergil.actor
The model for ports that make external connections to this graph.
ActorGraphModel.IconModel - Class in ptolemy.vergil.actor
The model for an icon that contains ports.
ActorGraphModel.LinkModel - Class in ptolemy.vergil.actor
The model for links that connect two ports, or a port and a vertex.
ActorGraphModel.LinkModel.LinkChangeListener - Class in ptolemy.vergil.actor
This change listener is responsible for dispatching graph events when an edge is moved.
ActorGraphModel.PortModel - Class in ptolemy.vergil.actor
The model for ports that are contained in icons in this graph.
ActorGraphModel.VertexModel - Class in ptolemy.vergil.actor
The model for vertexes that are contained within the relations of the ptolemy model.
ActorGraphTableau - Class in ptolemy.vergil.actor
This is a graph editor for ptolemy models.
ActorGraphTableau(Workspace) - Constructor for class ptolemy.vergil.actor.ActorGraphTableau
Create a tableau in the specified workspace.
ActorGraphTableau(PtolemyEffigy, String) - Constructor for class ptolemy.vergil.actor.ActorGraphTableau
Create a tableau with the specified container and name, with no specified default library.
ActorGraphTableau(PtolemyEffigy, String, LibraryAttribute) - Constructor for class ptolemy.vergil.actor.ActorGraphTableau
Create a tableau with the specified container, name, and default library.
ActorGraphTableau.Factory - Class in ptolemy.vergil.actor
A factory that creates graph editing tableaux for Ptolemy models.
ActorHandler - Class in org.kepler.webview.server.handler
 
ActorHandler(WebViewServer) - Constructor for class org.kepler.webview.server.handler.ActorHandler
 
ActorIndex - Class in ptolemy.moml.filter
Generate actor/demo index files.
ActorIndex() - Constructor for class ptolemy.moml.filter.ActorIndex
 
ActorInfo(String) - Constructor for class org.kepler.profiling.gui.ExecutionMonitorPanel.ActorInfo
Create a new ActorInfo with an actor's name.
ActorInspector - Class in org.sdm.spa.util
 
ActorInspector(String) - Constructor for class org.sdm.spa.util.ActorInspector
 
ActorInspector.AttributeInfo - Class in org.sdm.spa.util
 
ActorInspector.PortInfo - Class in org.sdm.spa.util
 
ActorInstanceController - Class in ptolemy.vergil.actor
This class provides interaction with nodes that represent Ptolemy II actor instances (i.e., not classes).
ActorInstanceController(GraphController) - Constructor for class ptolemy.vergil.actor.ActorInstanceController
Create an actor instance controller associated with the specified graph controller with full access.
ActorInstanceController(GraphController, AttributeController.Access) - Constructor for class ptolemy.vergil.actor.ActorInstanceController
Create an entity controller associated with the specified graph controller with the specified access.
ActorInteractionAddon - Interface in ptolemy.vergil.actor
An interface for defining additional gui interaction for specific actor types.
actorIterator() - Method in class ptolemy.actor.sched.Firing
Return the actor invocation sequence of the schedule in the form of a sequence of actors.
actorIterator() - Method in class ptolemy.actor.sched.Schedule
Return the actor sequence in the schedule.
actorIterator() - Method in class ptolemy.actor.sched.ScheduleElement
Return the actor invocation sequence of the schedule in the form of a sequence of actors.
ActorLayoutConfiguration - Class in ptolemy.vergil.basic.layout
Specialized layout configuration dialog for ActorGraphModels.
ActorLayoutConfiguration(NamedObj, String) - Constructor for class ptolemy.vergil.basic.layout.ActorLayoutConfiguration
Creates an initializes a layout configuration specifically tailored for ActorGraphModels.
ActorMetadata - Class in org.kepler.objectmanager
This class parses and contains metadata for an actor. this creates an entity of the form: <entity name="Constant"> <property name="documentation" class="ptolemy.vergil.basic.KeplerDocumentationAttribute"> actor to provide constant input </property> <property name="entityId" class="org.kepler.moml.NamedObjId" value="urn:lsid:lsid.ecoinformatics.org:actor:101:1"/> <property name="class" value="org.kepler.actor.TestActor" class="ptolemy.kernel.util.StringAttribute"> <property name="id" value="urn:lsid:lsid.ecoinformatics.org:actor:1001:1" class="ptolemy.kernel.util.StringAttribute"/> </property> <property name="output" class="org.kepler.moml.PortProperty> <property name="direction" value="output" class="ptolemy.kernel.util.StringAttribute"/> <property name="dataType" value="unknown" class="ptolemy.kernel.util.StringAttribute"/> <property name="isMultiport" value="false" class="ptolemy.kernel.util.StringAttribute"/> </property> <property name="trigger" class="org.kepler.moml.PortProperty> <property name="direction" value="input" class="ptolemy.kernel.util.StringAttribute"/> <property name="dataType" value="unknown" class="ptolemy.kernel.util.StringAttribute"/> <property name="isMultiport" value="true" class="ptolemy.kernel.util.StringAttribute"/> </property> <property class="org.kepler.sms.SemanticType" name="semanticType" value="urn:lsid:lsid.ecoinformatics.org:onto:1:1#ConstantActor"/> <property class="org.kepler.moml.Dependency" name="dependency" value="urn:lsid:lsid.ecoinformatics.org:nativeLib:1:1"/> </entity> Note: As of 8/18/09, this class no longer includes graphical ammentities, such as icons in the moml.
ActorMetadata() - Constructor for class org.kepler.objectmanager.ActorMetadata
default constructor. this is for serialization only. do not use this.
ActorMetadata(InputStream) - Constructor for class org.kepler.objectmanager.ActorMetadata
Constructor.
ActorMetadata(NamedObj) - Constructor for class org.kepler.objectmanager.ActorMetadata
builds a new ActorMetadata object from an existing NamedObj
ActorMetadataKAREntryHandler - Class in org.kepler.kar.handlers
 
ActorMetadataKAREntryHandler() - Constructor for class org.kepler.kar.handlers.ActorMetadataKAREntryHandler
 
ActorMetadataKAREntryHandler.Factory - Class in org.kepler.kar.handlers
A factory that creates a KAREntryHandler object.
actorModeInputParam - Variable in class org.kepler.data.datasource.dataturbine.DataTurbine
Actor mode
ActorModuleInitializer - Class in ptolemy.actor.injection
Initializer of the PtolemyInjector with Java SE specific actor interface to implementation mappings.
ActorModuleInitializer() - Constructor for class ptolemy.actor.injection.ActorModuleInitializer
Create instance that initializes the PtolemyInjector.
ActorModuleInitializer.Initializer - Interface in ptolemy.actor.injection
Initializer is responsible for initializing the PtolemyInjector with modules specific to the platform it was developed for.
actorName - Variable in class ptolemy.actor.lib.GetCausalityInterface
Name of the actor to get the causality interface of.
ActorNameIcon - Class in ptolemy.vergil.icon
An icon that displays the parameter _displayedName.
ActorNameIcon(NamedObj, String) - Constructor for class ptolemy.vergil.icon.ActorNameIcon
Create a new icon with the given name in the given container.
ActorOrientedClassProvider - Interface in org.ptolemy.classloading
A contract for dynamic providers of actor-oriented classes, i.e. reusable assemblies of model elements.
ActorRecursion - Class in ptolemy.domains.ddf.lib
This actor performs actor recursion dynamically during execution.
ActorRecursion(CompositeEntity, String) - Constructor for class ptolemy.domains.ddf.lib.ActorRecursion
Create an ActorRecursion with a name and a container.
ActorSemanticTypeEditorPane - Class in org.kepler.sms.gui
SemanticTypeEditor is a dialog for adding and removing semantic types to particular workflow components.
ActorSemanticTypeEditorPane(Frame, NamedObj) - Constructor for class org.kepler.sms.gui.ActorSemanticTypeEditorPane
Constructor.
ActorToken - Class in ptolemy.data
A token that contains an actor.
ActorToken(Entity) - Constructor for class ptolemy.data.ActorToken
Construct an ActorToken.
ActorType - Class in ptolemy.data.type
The base type of matrix token classes.
ActorType() - Constructor for class ptolemy.data.type.ActorType
 
ActorTypeUtil - Class in ptolemy.actor.util
This class includes a number of utility methods and classes that simplify the generation of type constraints.
ActorTypeUtil() - Constructor for class ptolemy.actor.util.ActorTypeUtil
 
ActorUploaderAction - Class in org.kepler.gui.kar
This action can be used for uploading a single Item KAR to a remote repository.
ActorUploaderAction(TableauFrame) - Constructor for class org.kepler.gui.kar.ActorUploaderAction
 
ActorViewerGraphController - Class in ptolemy.vergil.actor
A graph controller for the Ptolemy II schematic viewer.
ActorViewerGraphController() - Constructor for class ptolemy.vergil.actor.ActorViewerGraphController
Create a new basic controller with default terminal and edge interactors and default context menus.
ActorViewerGraphController.EntityLayout - Class in ptolemy.vergil.actor
This layout algorithm is responsible for laying out the ports within an entity.
ActorWithProgressBar - Class in org.kepler.monitor.test
This actor demonstrates the ProgressBarFigure by simulating some task that depends on the arrival of tokens.
ActorWithProgressBar(CompositeEntity, String) - Constructor for class org.kepler.monitor.test.ActorWithProgressBar
 
ActorWithTokenCounters - Class in org.kepler.monitor.test
This actor demonstrates the association of monitoring icons that show the number of tokens being received/produced in each port.
ActorWithTokenCounters(CompositeEntity, String) - Constructor for class org.kepler.monitor.test.ActorWithTokenCounters
 
ActorWithTrafficLight - Class in org.kepler.monitor.test
This actor demonstrates the TrafficLightFigure by simulating some task that depends on the arrival of tokens.
ActorWithTrafficLight(CompositeEntity, String) - Constructor for class org.kepler.monitor.test.ActorWithTrafficLight
 
adaptedReflectionCoefficients - Variable in class ptolemy.actor.lib.GradientAdaptiveLattice
The output port that produces the current reflection coefficients.
AdapterNode(Node) - Constructor for class org.sdm.spa.gui.XMLUIP.AdapterNode
 
add(Component, CellConstraints) - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Adds a component to the panel using the given cell constraints.
add(Component, String) - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Adds a component to the panel using the given encoded cell constraints.
add(Component) - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Adds a component to the container using the default cell constraints.
add(JLabel, CellConstraints, Component, CellConstraints) - Method in class com.jgoodies.forms.builder.PanelBuilder
Adds a label and component to the panel using the given cell constraints.
add(DBTableJoinItem) - Method in class org.ecoinformatics.seek.querybuilder.DBJoinPrcTable
 
add(DBTableField, boolean) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelBase
Adds a field (Row) to the model
add(DBSelectTableModelItem, boolean) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelBase
Adds a item (Row) to the model
add(Point) - Method in class org.ecoinformatics.seek.querybuilder.DBTableField
Translates its position via the point
add(DSTableFieldIFace) - Method in class org.ecoinformatics.seek.querybuilder.DBTableListModel
Add a field to the list
add(DBTableField) - Method in class org.ecoinformatics.seek.querybuilder.DBTableListModel
Add a field to the list
add(DBWhereIFace) - Method in class org.ecoinformatics.seek.querybuilder.DBWhereModel
Adds an item to the model, the parent attr MUST be set before adding item
add(DBWhereIFace, int) - Method in class org.ecoinformatics.seek.querybuilder.DBWhereModel
Adds an item to the model at a specified index, the parent attr MUST be set before adding item
add(Type) - Method in class org.geon.DBConnectionToken.DBConnectionType
Return a new type which represents the type that results from adding a token of this type and a token of the given argument type.
add(String, String) - Method in class org.geon.RockSample
 
add(String, String) - Static method in class org.kepler.CommandLineArgument
Add a new CommandLineArgument for a flag with a description.
add(String, int, String, Object...) - Static method in class org.kepler.CommandLineArgument
Add a new CommandLineArgument for a flag with following values.
add(Type) - Method in class org.kepler.gis.data.BoundingBoxToken.BoundingBoxType
 
add(Type) - Method in class org.kepler.gis.data.GISToken.GISType
 
add(Type) - Method in class org.kepler.gis.data.RasterToken.RasterType
 
add(Type) - Method in class org.kepler.gis.data.VectorToken.VectorType
 
add(TreePath) - Method in class org.kepler.gui.LibrarySearchResults
adds a TreePath to the results
add(NamedObj, KeplerGraphFrame) - Method in class org.kepler.gui.ModelToFrameManager
Map a NamedObj to a KeplerGraphFrame.
add(File, String) - Method in class org.kepler.io.MappedLog
 
add(JFrame, KARFile) - Method in class org.kepler.kar.KARManager
Add mapping of karFile to jFrame
add(Attribute) - Method in class org.kepler.objectmanager.data.db.AttributeList
Add an Attribute to this attribute list.
add(DSTableFieldDef) - Method in class org.kepler.objectmanager.data.db.DSTableKeyDef
Adds a DSTableFieldDef object to the Key
add(Attribute) - Method in class org.kepler.objectmanager.data.db.Entity
Add an Attribute to this table.
add(Row) - Method in class org.kepler.plotting.DataTable
 
add(Item) - Method in class org.kepler.reporting.roml.ItemsOfInterest
 
add(String) - Method in class org.kepler.util.FilenameFilter_RegularPattern
 
add(Object) - Method in class org.kepler.workflowrunmanager.gui.ColumnGroup
Add a TableColumn or ColumnGroup object to the ColumnGroup instance.
add(WorkflowRunEngine) - Method in class org.kepler.workflowscheduler.gui.configurationwizard.KnownWorkflowRunEnginePanel
Add a new engine to the configuration
add(WorkflowRunEngine) - Method in interface org.kepler.workflowscheduler.gui.configurationwizard.WorkflowRunEngineConfigurationChangeListener
Add a new engine to the configuration
add(LocalRemoteWorkflowMap) - Static method in class org.kepler.workflowscheduler.gui.LocalRemoteWorkflowMappingController
Add a local-remote map onto this controller
add - Variable in class org.mlc.swing.layout.ComponentDef
 
add(Object) - Method in class ptolemy.actor.gui.AWTContainer
Add the component to the container.
add(Object) - Method in interface ptolemy.actor.injection.PortableContainer
Add the specified component into the container.
add(ScheduleElement) - Method in class ptolemy.actor.sched.Schedule
Append the specified schedule element to the end of the schedule list.
add(int, ScheduleElement) - Method in class ptolemy.actor.sched.Schedule
Insert the specified schedule element at the specified position in the schedule list.
add(double) - Method in class ptolemy.actor.util.Time
Return a new time object whose time value is increased by the given double value.
add(Time) - Method in class ptolemy.actor.util.Time
Return a new time object whose time value is the sum of that of this time object and of the specified time object.
add(Token) - Method in class ptolemy.data.AbstractConvertibleToken
Return a new token whose value is the sum of this token and the argument.
add(Token) - Method in class ptolemy.data.AbstractNotConvertibleToken
Return a new token whose value is the sum of this token and the argument.
add(Token) - Method in class ptolemy.data.ArrayToken
Addition can occur between arrays, or between an array and a token of some base type (i.e., anything less than or equal to String).
add(String, Token) - Static method in class ptolemy.data.expr.Constants
Add a constant with the given name and value to the table.
add(Token) - Method in class ptolemy.data.MatrixToken
Return a new token whose value is the sum of this token and the argument.
add(Token) - Method in class ptolemy.data.ScalarToken
Return a new token whose value is the sum of this token and the argument.
add(Token) - Method in class ptolemy.data.Token
Return a new token whose value is the sum of this token and the argument.
add(Type) - Method in class ptolemy.data.type.ActorType
Return a new type which represents the type that results from adding a token of this type and a token of the given argument type.
add(Type) - Method in class ptolemy.data.type.BaseType
Return a new type which represents the type that results from adding a token of this type and a token of the given argument type.
add(Type) - Method in class ptolemy.data.type.FixType
Return a new type which represents the type that results from adding a token of this type and a token of the given argument type.
add(Type) - Method in class ptolemy.data.type.StructuredType
Return a new type which represents the type that results from adding a token of this type and a token of the given argument type.
add(Type) - Method in class ptolemy.data.type.test.TestToken.TestType
Return a new type which represents the type that results from adding a token of this type and a token of the given argument type.
add(Type) - Method in interface ptolemy.data.type.Type
Return a new type which represents the type that results from adding a token of this type and a token of the given argument type.
add(Object) - Method in class ptolemy.graph.LabeledList
Add an element to the list.
add(int, Object) - Method in class ptolemy.graph.LabeledList
Unsupported optional method of the List interface.
add(ScheduleElement) - Method in class ptolemy.graph.sched.Schedule
Append the specified schedule element to the end of the schedule list.
add(int, ScheduleElement) - Method in class ptolemy.graph.sched.Schedule
Insert the specified schedule element at the specified position in the schedule list.
add(UndoAction) - Method in class ptolemy.kernel.undo.UndoActionsList
Append a new entry to the list.
add(NamedObj) - Method in class ptolemy.kernel.util.Workspace
Add an item to the directory.
add(Complex) - Method in class ptolemy.math.Complex
Return the sum of this complex number and the argument z.
add(Complex[], Complex) - Static method in class ptolemy.math.ComplexArrayMath
Return a new array that is constructed from array by adding the complex number z to every element of array.
add(Complex[], Complex[]) - Static method in class ptolemy.math.ComplexArrayMath
Return a new array that is the element-by-element sum of the two input arrays.
add(Complex[][], Complex) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new matrix that is constructed from the argument by adding the second argument to every element.
add(Complex[][], Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new matrix that is constructed from the argument by adding the second matrix to the first one.
add(double[], double) - Static method in class ptolemy.math.DoubleArrayMath
Return a new array that is the formed by adding z to each element of the input array.
add(double[], double[]) - Static method in class ptolemy.math.DoubleArrayMath
Return a new array that is the element-by-element sum of the two input arrays.
add(double[][], double) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new matrix that is constructed from the argument by adding the second argument to every element.
add(double[][], double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new matrix that is constructed from the argument by adding the second matrix to the first one.
add(FixPoint) - Method in class ptolemy.math.FixPoint
Return a FixPoint with a value equal to the sum of this FixPoint and the argument.
add(FixPoint, Quantization) - Method in class ptolemy.math.FixPoint
Return a FixPoint with a value equal to the sum of this FixPoint and the argument.
add(float[], float) - Static method in class ptolemy.math.FloatArrayMath
Return a new array that is the formed by adding z to each element of the input array.
add(float[], float[]) - Static method in class ptolemy.math.FloatArrayMath
Return a new array that is the element-by-element sum of the two input arrays.
add(float[][], float) - Static method in class ptolemy.math.FloatMatrixMath
Return a new matrix that is constructed from the argument by adding the second argument to every element.
add(float[][], float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Return a new matrix that is constructed from the argument by adding the second matrix to the first one.
add(Fraction) - Method in class ptolemy.math.Fraction
Add this fraction to the given fraction.
add(Fraction[], Fraction) - Static method in class ptolemy.math.FractionArrayMath
Return a new array that is the formed by adding z to each element of the input array.
add(Fraction[], Fraction[]) - Static method in class ptolemy.math.FractionArrayMath
Return a new array that is the element-by-element sum of the two input arrays.
add(Fraction[][], Fraction) - Static method in class ptolemy.math.FractionMatrixMath
Return a new matrix that is constructed from the argument by adding the second argument to every element.
add(Fraction[][], Fraction[][]) - Static method in class ptolemy.math.FractionMatrixMath
Return a new matrix that is constructed from the argument by adding the second matrix to the first one.
add(int[], int) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array that is the formed by adding z to each element of the input array.
add(int[], int[]) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array that is the element-by-element sum of the two input arrays.
add(int[][], int) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new matrix that is constructed from the argument by adding the second argument to every element.
add(int[][], int[][]) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new matrix that is constructed from the argument by adding the second matrix to the first one.
add(long[], long) - Static method in class ptolemy.math.LongArrayMath
Return a new array that is the formed by adding z to each element of the input array.
add(long[], long[]) - Static method in class ptolemy.math.LongArrayMath
Return a new array that is the element-by-element sum of the two input arrays.
add(long[][], long) - Static method in class ptolemy.math.LongMatrixMath
Return a new matrix that is constructed from the argument by adding the second argument to every element.
add(long[][], long[][]) - Static method in class ptolemy.math.LongMatrixMath
Return a new matrix that is constructed from the argument by adding the second matrix to the first one.
add15dTitle(String, String) - Method in class com.jgoodies.forms.builder.I15dPanelBuilder
Adds a title to the form using the specified constraints.
addAction(Action) - Method in class ptolemy.vergil.toolbox.MenuActionFactory
Add an action to the pre-existing group of actions.
addAction(Action, String) - Method in class ptolemy.vergil.toolbox.MenuActionFactory
Add an action to the pre-existing group of actions.
addActionable(String, String, String, Actionable) - Method in class ptolemy.actor.gui.PtolemyQuery
Create an entry box with a button for the specified action.
addActionListener(ActionListener) - Method in class org.kepler.gui.NewActorFrame
add an action listener that will be notified when the ok or cancel button is clicked.
addActionListener(ActionListener) - Method in class org.kepler.gui.NewFolderFrame
add an action listener that will be notified when the ok or cancel button is clicked.
addActions(Action[], String) - Method in class ptolemy.vergil.toolbox.MenuActionFactory
Add a set of action to the pre-existing group of actions.
addActorAnnotation(String, String) - Method in class org.ecoinformatics.seek.sms.AnnotationEngine
Annotate an actor (via the lsid) with a given ontology concept id
addActorFiringListener(ActorFiringListener) - Method in class ptolemy.actor.AtomicActor
Append a listener to the current set of actor firing listeners.
addActorFiringListener(ActorFiringListener) - Method in class ptolemy.actor.CompositeActor
Append a listener to the current set of actor firing listeners.
addActorFiringListener(ActorFiringListener) - Method in interface ptolemy.actor.FiringsRecordable
Append a listener to the current set of firing event listeners.
addActorOrientedClassProvider(ActorOrientedClassProvider) - Method in class org.ptolemy.classloading.osgi.OSGiClassLoadingStrategy
Adds the given provider to the set of registered ActorOrientedClassProviders.
addAfter(DBWhereIFace, Object) - Method in class org.ecoinformatics.seek.querybuilder.DBWhereOperator
Add new item "after" the item identified
addAll(Collection) - Method in class ptolemy.graph.LabeledList
Unsupported optional method of the List interface.
addAll(int, Collection) - Method in class ptolemy.graph.LabeledList
Unsupported optional method of the List interface.
addAnalysis(String, Object) - Method in class ptolemy.actor.Manager
Add a static analysis to this manager.
addAnalysis(Analysis) - Method in class ptolemy.graph.Graph
Add an analysis to the list of analyses that this graph is associated with.
addAnnotationObject(NamedObj) - Method in class org.kepler.sms.gui.SemanticTypeTable
Add an object to the set of objects being annotated within this panel.
addAttribute(String, String) - Method in class org.kepler.kar.KAREntry
 
addAttribute(String, String) - Method in class org.kepler.moml.KeplerActorMetadata
 
addAttribute(Attribute) - Method in class org.kepler.objectmanager.ActorMetadata
add a generic attribute to this actorMetadata object.
addAttribute(String, String) - Method in class org.kepler.objectmanager.cache.CacheObject
set a user configured attribute on the CacheObject
addAttribute(String, String) - Method in interface org.kepler.objectmanager.cache.CacheObjectInterface
set a user configured attribute on the CacheObject
addAttribute(String, String) - Method in class org.kepler.objectmanager.library.LibItem
 
addAttributes(List) - Method in class ptolemy.moml.LibraryBuilder
Add a list of Attributes.
addBooleanParameter(String, boolean) - Method in class org.kepler.provenance.RecordingParameters
Add a boolean parameter with a default value.
addBranches(IOPort) - Method in class ptolemy.actor.process.BranchController
Add branches corresponding to the channels of the port argument.
addButtons(JButton[]) - Method in class com.jgoodies.forms.builder.ButtonStackBuilder
Adds a sequence of related buttons separated by a default gap.
addCacheListener(CacheListener) - Method in class org.kepler.objectmanager.cache.CacheManager
add a CacheListener to listen for cache events
addCanvasToLocation(Component, TableauFrame) - Method in class org.kepler.gui.ViewManager
 
addCaptionLine(String) - Method in class ptolemy.plot.PlotBox
Add a line to the caption (displayed at below graph) .
addCaptionLine(String) - Method in interface ptolemy.plot.PlotBoxInterface
Add a line to the caption (displayed at below graph) .
AddCaseAction() - Constructor for class org.kepler.gui.frame.CaseGraphTableau.AddCaseAction
Create a case action with label "Add Case".
AddCaseAction() - Constructor for class ptolemy.vergil.modal.CaseGraphFrame.AddCaseAction
Create a case action with label "Add Case".
addCellConstraints(String, CellConstraints) - Method in class org.mlc.swing.layout.ContainerLayout
 
addCellEditorListener(CellEditorListener) - Method in class org.kepler.plotting.table.ColorTableCellEditor
 
addCellEditorListener(CellEditorListener) - Method in class org.kepler.tagging.gui.ColorTableCellEditor
 
addChangeListener(ChangeListener) - Method in class org.kepler.moml.NamedObjId
Add a change listener, if the container is null the listener is not added.
addChangeListener(ChangeListener) - Method in class ptolemy.actor.lib.hoc.LifeCycleManager
Override the base class to delegate to the container AND also record the listener locally.
addChangeListener(ChangeListener) - Method in interface ptolemy.kernel.util.Changeable
Add a change listener.
addChangeListener(ChangeListener) - Method in class ptolemy.kernel.util.ChangeRequest
Add a new change listener to this request.
addChangeListener(ChangeListener) - Method in class ptolemy.kernel.util.NamedObj
Add a change listener.
addCheckBox(String, String, boolean) - Method in class ptolemy.gui.Query
Create an on-off check box.
addChoice(String) - Method in class ptolemy.data.expr.Parameter
Add a choice.
addChoice(String, String, Object[], Object) - Method in class ptolemy.gui.Query
Create an uneditable choice menu.
addChoice(String, String, Object[], Object, boolean) - Method in class ptolemy.gui.Query
Create a choice menu.
addChoice(String, String, Object[], Object, boolean, Color, Color) - Method in class ptolemy.gui.Query
Create a choice menu.
addChoosableFileFilter(PtFilenameFilter) - Method in class ptolemy.gui.PtFileChooser
Set the file name filter for the dialog.
addChosenTransition(State, Transition) - Method in class ptolemy.domains.modal.kernel.FSMActor
Add a chosen transition to the set of chosen transitions.
addColorChooser(String, String, String) - Method in class ptolemy.gui.Query
Create a ColorChooser.
addColorScheme(Object, Color[]) - Method in class org.kepler.monitor.figure.StateFigure
Sets the color scheme for a state.
addColumnGroup(ColumnGroup) - Method in class org.kepler.workflowrunmanager.gui.GroupableTableColumnModel
 
addColumnGroup(int, ColumnGroup) - Method in class org.kepler.workflowrunmanager.gui.GroupableTableColumnModel
Add a new columnGroup.
addColumnSpec(String) - Method in class org.mlc.swing.layout.ContainerLayout
 
addColumnSpec(int, String) - Method in class org.mlc.swing.layout.ContainerLayout
 
addComponent(JPanel, JComponent, GridBagLayout, GridBagConstraints) - Static method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerPanel
 
addComponent(String, ComponentDef, CellConstraints) - Method in class org.mlc.swing.layout.ContainerLayout
 
addComposite(CompositeEntity, TabbedKeplerGraphTableau, LibraryAttribute) - Method in class org.kepler.gui.frame.TabbedKeplerGraphFrame
Add a new tab for a model.
addConcept(String) - Method in class org.ecoinformatics.seek.sms.OntologyCatalog
Adds a concept to the default ontology
addConcept(String, String) - Method in class org.ecoinformatics.seek.sms.OntologyCatalog
Adds a concept to the default ontology
addConcept(String) - Method in class org.kepler.sms.OntologyCatalog
Adds a concept to the default ontology
addConcept(String, String) - Method in class org.kepler.sms.OntologyCatalog
Adds a concept to the default ontology
AddConceptCBItem(String) - Constructor for class org.kepler.tagging.gui.CBItems.AddConceptCBItem
 
addConfigurationListener(ConfigurationEventListener) - Method in class org.kepler.configuration.ConfigurationManager
add a configuration listener
addConnection(Relation, NamedObj, NamedObj, double[]) - Method in class ptolemy.vergil.basic.layout.kieler.ApplyLayoutRequest
Add a new connection routing change to the request.
addConnection(Relation, NamedObj, NamedObj, double[], Point2D.Double) - Method in class ptolemy.vergil.basic.layout.kieler.ApplyLayoutRequest
Add a new connection routing change to the request.
addConnection(NamedObj, LayoutHint) - Method in class ptolemy.vergil.basic.layout.kieler.UndoLayoutAction
Add a connection.
addConstraint(UnitConstraint) - Method in class ptolemy.moml.unit.UnitConstraints
Add a UnitConstraint to the collection.
addContainer(String, Container) - Method in class org.mlc.swing.layout.LayoutFrame
This is for adding containers on the fly.
addContainer(String, Container) - Method in interface org.mlc.swing.layout.MultiContainerFrame
Add a container with the specified name.
addContainer(String, Container) - Method in class ptolemy.actor.gui.run.RunLayoutFrame
Add a container with the specified name.
addConversion(Type, Converter) - Static method in class org.kepler.webview.data.TokenConverter
 
addCurrentTag() - Method in class org.kepler.tagging.gui.AutoCompleteComboBox
 
addCurve(Transition, double) - Method in class ptolemy.vergil.basic.layout.kieler.ApplyLayoutRequest
Add a new transition curve change to the request.
addCurve(ApplyLayoutRequest.CurveEntry) - Method in class ptolemy.vergil.basic.layout.kieler.UndoLayoutAction
Add a curve to the undo action.
addDataSink(DataSink) - Method in class org.kepler.spark.director.SparkJob
Add a sink operator to the job.
addDebugListener(DebugListener) - Method in class ptolemy.actor.sched.StaticSchedulingDirector
Override the base class to also listen to the scheduler, if there is one.
addDebugListener(DebugListener) - Method in class ptolemy.actor.util.CalendarQueue
Append a listener to the current set of debug listeners.
addDebugListener(DebugListener) - Method in class ptolemy.domains.de.kernel.DECQEventQueue
Append a listener to the current set of debug listeners.
addDebugListener(DebugListener) - Method in class ptolemy.domains.de.kernel.DEDirector
Append the specified listener to the current set of debug listeners.
addDebugListener(DebugListener) - Method in interface ptolemy.kernel.util.Debuggable
Add a debug listener.
addDebugListener(DebugListener) - Method in class ptolemy.kernel.util.NamedObj
Append a listener to the current set of debug listeners.
addDebugListener(DebugListener) - Method in class ptolemy.kernel.util.PtolemyThread
Append a listener to the current set of debug listeners.
addDefaultExecutionChoice() - Method in class org.kepler.ddp.actor.ExecutionChoice
Add default execution choice if none are present.
addDefaultInputsAndOutputs() - Method in class org.kepler.ddp.actor.ExecutionChoice
Add default inputs and outputs if none are present.
addDefaultInputsAndOutputs(ExecutionChoice) - Static method in class org.kepler.ddp.actor.ExecutionChoice
Add default inputs and outputs if non are present for an ExecutionChoice.
addDefaults() - Method in class org.kepler.ddp.actor.ExecutionChoice
 
addDeleteButton(JToolBar, Item, DragAndDropPanel) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
addDeleteButton() adds the delete button to the toolbar.
addDeletionListener(DeletionListener, int) - Method in class org.kepler.plotting.Row
 
addDeletionListener(DeletionListener) - Method in class org.kepler.plotting.Row
 
addDemoSeries() - Method in class org.kepler.plotting.Plot
 
addDependency(String) - Method in class org.kepler.objectmanager.ActorMetadata
add the id of a dependency to the metadata
addDependencyDeclaration(DependencyDeclaration) - Method in class ptolemy.actor.util.ConstVariableModelAnalysis
Add the information in the given dependency declaration to the dependence graph of this analysis.
addDirectoryToJavaLibraryPath(String) - Static method in class ptolemy.util.StringUtilities
Add a directory to the java.library.path directory..
addDisplay(String, String, String) - Method in class ptolemy.gui.Query
Create a simple one-line text display, a non-editable value that is set externally using the setDisplay() method.
addDisplay(String, String, String, Color, Color) - Method in class ptolemy.gui.Query
Create a simple one-line text display, a non-editable value that is set externally using the setDisplay() method.
addDocumentation(ActorMetadata) - Static method in class org.kepler.provenance.kar.UploadKarToRepositoryNoGUI
adds the generated documentation (if it exists) to the actor metadata
addDomain(Domain) - Method in class org.kepler.authentication.DomainList
 
addDummyListener() - Method in class org.kepler.tagging.gui.TagBarInsertionUI
 
addEdge(Node, Node, Object) - Method in class ptolemy.graph.Graph
Add a weighted edge between two nodes.
addEdge(Node, Node) - Method in class ptolemy.graph.Graph
Add an unweighted edge between two nodes.
addEdge(Object, Object, Object) - Method in class ptolemy.graph.Graph
Given two node weights w1 and w2, add weighted edges of the form (x1, x2), where (x1.getWeight() == w1) && (x2.getWeight() == w2).
addEdge(Object, Object) - Method in class ptolemy.graph.Graph
Given two node weights w1 and w2, add all unweighted edges of the form (x1, x2), where (x1.getWeight() == w1) && (x2.getWeight() == w2).
addEdge(Edge) - Method in class ptolemy.graph.Graph
Add a pre-constructed edge (unweighted or weighted).
addEdges(Collection) - Method in class ptolemy.graph.Graph
Add a collection of edges to the graph.
addEditListener(EditListener) - Method in class ptolemy.plot.EditablePlot
Add a listener to be informed when the user modifies a data set.
AddEditorFactory - Class in ptolemy.moml.filter
Deprecated.
Use AddMissingParameter instead because it handles multiple missing parameter at once.
AddEditorFactory() - Constructor for class ptolemy.moml.filter.AddEditorFactory
Deprecated.
 
addEditorForRow(int, TableCellEditor) - Method in class org.kepler.reporting.gui.RowEditorModel
 
addElement(String) - Method in class org.kepler.modulemanager.gui.SuitesList
 
addEnabledListener(ProvenanceEnabledListener) - Method in class org.kepler.provenance.ProvenanceRecorder
Add a ProvenanceEnabledListener to be notified when provenance is enabled/disabled.
addEncapsulatedPort(IOPort) - Method in class org.kepler.sms.KeplerCompositeIOPort
Assigns the given ptolemy port reference to the current set of encapsulated ports.
addEncapsulatedPort(KeplerVirtualIOPort) - Method in class org.kepler.sms.KeplerCompositeIOPort
Assigns the given virtual port to the current set of encapsulated ports.
addEntry(PtolemyQuery) - Method in class ptolemy.actor.gui.style.CheckBoxStyle
Create a new check box entry in the given query associated with the parameter containing this style.
addEntry(PtolemyQuery) - Method in class ptolemy.actor.gui.style.ChoiceStyle
Create a new uneditable combo box entry in the given query associated with the attribute containing this style.
addEntry(PtolemyQuery) - Method in class ptolemy.actor.gui.style.EditableChoiceStyle
Create a new editable combo box entry in the given query associated with the attribute containing this style.
addEntry(PtolemyQuery) - Method in class ptolemy.actor.gui.style.FileChooserStyle
Create a new entry in the given query associated with the attribute containing this style.
addEntry(PtolemyQuery) - Method in class ptolemy.actor.gui.style.HiddenStyle
Create no entry in the given query associated with the attribute containing this style.
addEntry(PtolemyQuery) - Method in class ptolemy.actor.gui.style.LineStyle
Create a new type-in line entry in the given query associated with the attribute containing this style.
addEntry(PtolemyQuery) - Method in class ptolemy.actor.gui.style.NotEditableLineStyle
Create a new type-in line entry in the given query associated with the attribute containing this style.
addEntry(PtolemyQuery) - Method in class ptolemy.actor.gui.style.NoteStyle
Create a new type-in line entry in the given query associated with the attribute containing this style.
addEntry(PtolemyQuery) - Method in class ptolemy.actor.gui.style.ParameterEditorStyle
Create a new entry in the given query associated with the attribute containing this style.
addEntry(PtolemyQuery) - Method in class ptolemy.actor.gui.style.TextStyle
Create a new type-in line entry in the given query associated with the attribute containing this style.
addEntryAttribute(KAREntry, String, String) - Method in class org.kepler.kar.KARManifest
add an entry specific attribute
addEntryAttribute(String, String, String) - Method in class org.kepler.kar.KARManifest
add an entry specific attribute
addError(String, String) - Method in class org.kepler.util.WorkflowRunBuilder
 
addEscapes(String) - Static method in error ptolemy.data.expr.TokenMgrError
Replaces unprintable characters by their escaped (or unicode escaped) equivalents in the given string
addEscapes(String) - Static method in error ptolemy.moml.unit.TokenMgrError
Replaces unprintable characters by their escaped (or unicode escaped) equivalents in the given string
addExecutingListener(ExecutionAspectListener) - Method in interface ptolemy.actor.ActorExecutionAspect
Add schedule listener.
addExecutionListener(ExecutionListener) - Method in class org.kepler.ExecutionEngine
add an execution listener
addExecutionListener(ExecutionListener) - Method in class ptolemy.actor.Manager
Add a listener to be notified when the model execution changes state.
addExecutions(List<KeplerLSID>) - Method in class org.kepler.provenance.manager.TransferComponent
Add KeplerLSIDs for provenance executions.
addExtension(String) - Method in class org.ecoinformatics.seek.querybuilder.DBFileFilter
Adds a filetype "dot" extension to filter against.
addFeatures(String, String, String, String, Handler<AsyncResult<String>>) - Static method in class org.kepler.gis.arcgis.FeatureServiceUtilities
Add features to a feature service.
addField(String, String, Vector) - Method in class org.kepler.objectmanager.data.db.DSTableDef
Adds a field to the table
addFieldChangeListener(DBSelectTableFieldChangedListener) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIBase
Adds listener
addFile(File, String, String) - Method in class org.kepler.cloudsharing.util.WorkflowResults
Add a file with a specific type to the collection.
addFileChooser(String, String, String, URI, File) - Method in class ptolemy.gui.Query
Create a FileChooser that selects files only, not directories, and has the default colors (white in the background, black in the foreground).
addFileChooser(String, String, String, URI, File, boolean) - Method in class ptolemy.gui.Query
Create a FileChooser that selects files only, not directories, and has the default colors (white in the background, black in the foreground).
addFileChooser(String, String, String, URI, File, boolean, boolean) - Method in class ptolemy.gui.Query
Create a FileChooser with default colors (white in the foreground, black in the background).
addFileChooser(String, String, String, URI, File, Color, Color) - Method in class ptolemy.gui.Query
Create a FileChooser that selects files only, not directories.
addFileChooser(String, String, String, URI, File, boolean, boolean, Color, Color) - Method in class ptolemy.gui.Query
Create a FileChooser.
addFileChooser(String, String, String, URI, File, boolean, boolean, boolean, Color, Color) - Method in class ptolemy.gui.Query
Create a FileChooser.
addFileChooser(String, String, String, URI, File, boolean, boolean, boolean, Color, Color, FilenameFilter) - Method in class ptolemy.gui.Query
Create a FileChooser.
addFileForExecution(Map<String, String>, File, int) - Method in class org.kepler.provenance.sql.SQLRecordingV8
Associate the contents of a file with the most recent workflow execution.
addFileForLastExecution(Map<String, String>, File) - Method in class org.kepler.provenance.Recording
Associate the contents of a file with the most recent workflow execution.
addFileForLastExecution(Map<String, String>, File) - Method in class org.kepler.provenance.sql.SQLRecordingV8
Associate the contents of a file with the most recent workflow execution.
addFileParameter(String, String) - Method in class org.kepler.provenance.RecordingParameters
Add a file parameter with default value.
addFilter(MoMLFilter) - Static method in class ptolemy.moml.filter.BackwardCompatibility
Add a MoMLFilter to the list of filters.
addFixed(JComponent) - Method in class com.jgoodies.forms.builder.ButtonBarBuilder
Adds a fixed size component.
addFixed(JComponent) - Method in class com.jgoodies.forms.builder.ButtonStackBuilder
Adds a fixed size component.
addFixedNarrow(JComponent) - Method in class com.jgoodies.forms.builder.ButtonBarBuilder
Adds a fixed size component with narrow margins.
addFixWidthComponent(JPanel, JComponent, GridBagLayout, GridBagConstraints) - Static method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerPanel
 
addGlue() - Method in class com.jgoodies.forms.builder.ButtonBarBuilder
Adds a glue that will be given the extra space, if this box is larger than its preferred size.
addGlue() - Method in class com.jgoodies.forms.builder.ButtonStackBuilder
Adds a glue that will be given the extra space, if this box is larger than its preferred size.
addGMLLayer(String, String, String) - Method in class org.kepler.gis.display.JumpFrame
Adds a feature to the GMLLayer attribute of the JumpFrame object
addGraph() - Method in class org.kepler.gui.PlotsPanel
 
addGraph(Graph) - Method in class ptolemy.graph.Graph
Add a given graph to this graph.
addGridded(JComponent) - Method in class com.jgoodies.forms.builder.ButtonBarBuilder
Adds a gridded component, i.e. a component that will get the same dimension as all other gridded components.
addGridded(JComponent) - Method in class com.jgoodies.forms.builder.ButtonStackBuilder
Adds a gridded component.
addGriddedButtons(JButton[]) - Method in class com.jgoodies.forms.builder.ButtonBarBuilder
Adds a sequence of related gridded buttons each separated by a default gap.
addGriddedGrowing(JComponent) - Method in class com.jgoodies.forms.builder.ButtonBarBuilder
Adds a gridded component that grows.
addGriddedGrowingButtons(JButton[]) - Method in class com.jgoodies.forms.builder.ButtonBarBuilder
Adds a sequence of gridded buttons that grow where each is separated by a default gap.
AddGrids - Class in org.ecoinformatics.seek.gis.java_gis
Name: AddGrids.java
Purpose: The purpose of this actor is to 'merge' multiple ASC grids.
AddGrids(CompositeEntity, String) - Constructor for class org.ecoinformatics.seek.gis.java_gis.AddGrids
 
addGroupedColumn(int) - Method in class com.jgoodies.forms.layout.FormLayout
Adds the specified column index to the last column group.
addGroupedRow(int) - Method in class com.jgoodies.forms.layout.FormLayout
Adds the specified row index to the last row group.
addHierarchyListener(HierarchyListener) - Method in class ptolemy.kernel.util.NamedObj
Add a hierarchy listener.
addHotKeys(JGraph) - Method in class org.kepler.gui.controller.TabbedActorController
Add hot keys to the actions in the given JGraph.
addHotKeys(JGraph) - Method in class ptolemy.vergil.actor.ActorController
Add hot keys to the actions in the given JGraph.
addHotKeys(JGraph) - Method in class ptolemy.vergil.actor.ClassDefinitionController
Add hot keys to the actions in the given JGraph.
addHotKeys(JGraph) - Method in class ptolemy.vergil.basic.MoMLModelAttributeController
Add hot keys to the look inside action in the given JGraph.
addHotKeys(JGraph) - Method in class ptolemy.vergil.basic.NamedObjController
Add hot keys to the actions in the given JGraph.
addHotKeys(JGraph) - Method in class ptolemy.vergil.kernel.AttributeController
Add hot keys to the actions in the given JGraph.
addHotKeys(JGraph) - Method in class ptolemy.vergil.modal.TransitionController
Add hot keys to the actions in the given JGraph.
addHTMLTag(String) - Static method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerServerInstallationInfoPanel
 
addI15dLabel(String, CellConstraints) - Method in class com.jgoodies.forms.builder.I15dPanelBuilder
Adds an internationalized (i15d) textual label to the form using the specified constraints.
addI15dLabel(String, String) - Method in class com.jgoodies.forms.builder.I15dPanelBuilder
Adds an internationalized (i15d) textual label to the form using the specified constraints.
addI15dLabel(String, CellConstraints, Component, CellConstraints) - Method in class com.jgoodies.forms.builder.I15dPanelBuilder
Adds an internationalized (i15d) label and component to the panel using the given cell constraints.
addI15dSeparator(String, CellConstraints) - Method in class com.jgoodies.forms.builder.I15dPanelBuilder
Adds an internationalized (i15d) titled separator to the form using the specified constraints.
addI15dSeparator(String, String) - Method in class com.jgoodies.forms.builder.I15dPanelBuilder
Adds an internationalized (i15d) titled separator to the form using the specified constraints.
addI15dTitle(String, CellConstraints) - Method in class com.jgoodies.forms.builder.I15dPanelBuilder
Adds a title to the form using the specified constraints.
AddIcon - Class in ptolemy.moml.filter
Certain actors have specialized icons that display the value of one of the parameters.
AddIcon() - Constructor for class ptolemy.moml.filter.AddIcon
 
addIdentity(String) - Method in interface org.kepler.ssh.ExecInterface
addIdentity, useless for local exec
addIdentity(String) - Method in class org.kepler.ssh.GsiSshExec
addIdentity, useless for local exec
addIdentity(String) - Method in class org.kepler.ssh.LocalExec
addIdentity, useless for local exec
addIdentity(String) - Method in class org.kepler.ssh.SshExec
Add identity file Public-key authentication can be used if you add identity files
addIdentity(File) - Method in class org.kepler.ssh.SshExec
 
addInequalities(Iterator) - Method in class ptolemy.graph.InequalitySolver
Add a group of inequalities to the set of constraints.
addInequality(Inequality) - Method in class ptolemy.graph.InequalitySolver
Add an Inequality to the set of constraints.
addInitializable(Initializable) - Method in class org.kepler.monitor.MonitorManager
Does nothing.
addInitializable(Initializable) - Method in class org.kepler.provenance.ProvenanceRecorder
Add the specified object to the list of objects whose preinitialize(), intialize(), and wrapup() methods should be invoked upon invocation of the corresponding methods of this object.
addInitializable(Initializable) - Method in class org.kepler.reporting.ReportingListener
 
addInitializable(Initializable) - Method in class org.kepler.webview.actor.WebViewAttribute
 
addInitializable(Initializable) - Method in class ptolemy.actor.AbstractInitializableAttribute
Add the specified object to the set of objects whose preinitialize(), initialize(), and wrapup() methods should be invoked upon invocation of the corresponding methods of this object.
addInitializable(Initializable) - Method in class ptolemy.actor.AtomicActor
Add the specified object to the set of objects whose preinitialize(), initialize(), and wrapup() methods should be invoked upon invocation of the corresponding methods of this object.
addInitializable(Initializable) - Method in class ptolemy.actor.CompositeActor
Add the specified object to the set of objects whose preinitialize(), initialize(), and wrapup() methods should be invoked upon invocation of the corresponding methods of this object.
addInitializable(Initializable) - Method in class ptolemy.actor.Director
Add the specified object to the set of objects whose preinitialize(), initialize(), and wrapup() methods should be invoked upon invocation of the corresponding methods of this object.
addInitializable(Initializable) - Method in class ptolemy.actor.DoNothingDirector
 
addInitializable(Initializable) - Method in interface ptolemy.actor.Initializable
Add the specified object to the set of objects whose preinitialize(), initialize(), and wrapup() methods should be invoked upon invocation of the corresponding methods of this object.
addInitializable(Initializable) - Method in class ptolemy.actor.lib.ExceptionManager
Add the specified object to the set of objects whose preinitialize(), initialize(), and wrapup() methods should be invoked upon invocation of the corresponding methods of this object.
addInitializable(Initializable) - Method in class ptolemy.actor.parameters.ParameterSet
Add the specified object to the list of objects whose preinitialize(), initialize(), and wrapup() methods should be invoked upon invocation of the corresponding methods of this object.
addInitializable(Initializable) - Method in class ptolemy.actor.parameters.SharedParameter
Add the specified object to the list of objects whose preinitialize(), initialize(), and wrapup() methods should be invoked upon invocation of the corresponding methods of this object.
addInitializable(Initializable) - Method in class ptolemy.actor.PublisherPort
Throw an exception.
addInitializable(Initializable) - Method in class ptolemy.actor.PubSubPort
Throw an exception.
addInitializable(Initializable) - Method in class ptolemy.data.expr.AbstractInitializableParameter
Add the specified object to the set of objects whose preinitialize(), initialize(), and wrapup() methods should be invoked upon invocation of the corresponding methods of this object.
addInitializable(Initializable) - Method in class ptolemy.domains.modal.kernel.FSMActor
Add the specified object to the list of objects whose preinitialize(), initialize(), and wrapup() methods should be invoked upon invocation of the corresponding methods of this object.
addInputPortCounters - Variable in class org.kepler.monitor.MonitorManager
Add monitor attributes for input ports?
addInputType(TypedAtomicActor, Type, String) - Static method in class org.kepler.sms.gui.SemanticTypeEditor
 
addIntParameter(String, int) - Method in class org.kepler.provenance.RecordingParameters
Add an integer parameter.
addIOPortEventListener(IOPortEventListener) - Method in class ptolemy.actor.IOPort
Append a listener to the current set of port event listeners.
addItemToLayout(Item) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
Adds an item to the Report Layout model.
ADDITION - Static variable in class org.kepler.workflowrunmanager.WorkflowRunManagerEvent
 
additionalOptions - Variable in class org.kepler.ddp.actor.ExecutionChoice
Additional command line options.
additionParameter - Variable in class org.ecoinformatics.seek.gis.java_gis.GridReset
if newvalParameter is empty, add this to the existing value
addJoin(DBTableField, DBTableField) - Method in class org.ecoinformatics.seek.querybuilder.DBTableJoin
Add a Join
addJoin(DBSelectTableModelItem, DBSelectTableModelItem) - Method in class org.ecoinformatics.seek.querybuilder.DBTableJoin
Add a Join by item
addKAR(File) - Method in class org.kepler.objectmanager.library.LibraryManager
Given the LSID of a KAR that has been successfully cached this method will add all of the contents of that KAR into the Library by first updating the LibIndex and then updating the tree model.
addKAREntryHandler(KAREntryHandler) - Method in class org.kepler.objectmanager.cache.CacheManager
 
addLabel(String) - Method in class com.jgoodies.forms.builder.PanelBuilder
Adds a textual label to the form using the default constraints.
addLabel(String, CellConstraints) - Method in class com.jgoodies.forms.builder.PanelBuilder
Adds a textual label to the form using the specified constraints.
addLabel(String, String) - Method in class com.jgoodies.forms.builder.PanelBuilder
Adds a textual label to the form using the specified constraints.
addLabel(String, CellConstraints, Component, CellConstraints) - Method in class com.jgoodies.forms.builder.PanelBuilder
Adds a label and component to the panel using the given cell constraints.
addLabel(ItemLabel) - Method in class org.kepler.reporting.rio.Item
 
addLabelToBar(NamedOntClass) - Method in class org.kepler.tagging.gui.ExistingTagsPanel
 
addLayout(ContainerLayout) - Method in class org.mlc.swing.layout.LayoutConstraintsManager
 
addLayoutComponent(String, Component) - Method in class com.jgoodies.forms.layout.FormLayout
Throws an UnsupportedOperationException.
addLayoutComponent(Component, Object) - Method in class com.jgoodies.forms.layout.FormLayout
Adds the specified component to the layout, using the specified constraints object.
addLayoutComponent(String, Component) - Method in class org.mlc.swing.layout.ContainerLayout
 
addLayoutComponent(Component, Object) - Method in class org.mlc.swing.layout.ContainerLayout
 
addLegend(int, String) - Method in class ptolemy.plot.Histogram
Add a legend (displayed at the upper right) for the specified data set with the specified string.
addLegend(int, String) - Method in class ptolemy.plot.Plot
Add a legend (displayed at the upper right) for the specified data set with the specified string.
addLegend(int, String) - Method in class ptolemy.plot.PlotBox
Add a legend (displayed at the upper right) for the specified data set with the specified string.
addLegend(int, String) - Method in interface ptolemy.plot.PlotBoxInterface
Add a legend (displayed at the upper right) for the specified data set with the specified string.
addLegend(int, String) - Method in interface ptolemy.plot.PlotInterface
 
addLibraryJTree(JTree) - Method in class org.kepler.objectmanager.library.LibraryManager
Add a reference to a JTree that is using the Library Tree Model so that it can be updated when the tree model changes.
addLine(String, String, String) - Method in class ptolemy.gui.Query
Create a single-line entry box with the specified name, label, and default value.
addLine(String, String, String, Color, Color) - Method in class ptolemy.gui.Query
Create a single-line entry box with the specified name, label, default value, and background color.
addLinkDomainObject(NamedObj) - Method in class org.kepler.sms.gui.SemanticLinkTable
Add an object to the set of objects being annotated within this panel.
addLinkedPort(Port) - Method in class ptolemy.moml.Vertex
Add the specified port to the list of ports linked to this vertex.
addListener(ActionListener) - Method in class org.kepler.gui.AnnotatedPTree
add a listener for events
addListener(ActionListener) - Method in class org.kepler.gui.TreeAction
Adds a listener for the new_folder_created event
addListener(ModuleManagerEventListener) - Method in class org.kepler.modulemanager.ModuleDownloader
add a listener for ModuleManagerEvents
addListener(DataCacheListener) - Method in class org.kepler.objectmanager.cache.DataCacheObject
Add a listenero
addListener(SMSTagChangeListener) - Static method in class org.kepler.sms.SMSServices
 
addListener(SshEventListener) - Method in class org.kepler.ssh.SshEventRegistry
Append a listener to the current set of ssh event listeners.
addListener(DeletableColorIconLabelListener) - Method in class org.kepler.tagging.gui.DeletableColorIconLabel
Add listener for label events
addListener(WeakReference<TagBarDisplayUI>) - Static method in class org.kepler.tagging.gui.TagManagerUI
 
addListener(ScheduleChangeListenerInterface) - Method in class org.kepler.workflowscheduler.gui.ScheduleChangeController
Add a ScheduleChangeListenerInterface into the controller
addLiveSoundListener(LiveSoundListener) - Static method in class ptolemy.media.javasound.LiveSound
Add a live sound listener.
addLiveSoundListener(LiveSoundListener) - Method in class ptolemy.media.javasound.LiveSoundCommon
Add a live sound listener.
addLiveSoundListener(LiveSoundListener) - Method in interface ptolemy.media.javasound.LiveSoundInterface
Add a live sound listener.
addLocalRepoRootDir(File) - Method in class org.kepler.objectmanager.cache.LocalRepositoryManager
Convenience method for addLocalRepoRootDir(File, String)
addLocalRepoRootDir(File, String) - Method in class org.kepler.objectmanager.cache.LocalRepositoryManager
Add a local repository for a given root directory and name.
addLocation(Locatable, double, double) - Method in class ptolemy.vergil.basic.layout.kieler.ApplyLayoutRequest
Add a new location change to the request.
addLocation(ApplyLayoutRequest.LocationEntry) - Method in class ptolemy.vergil.basic.layout.kieler.UndoLayoutAction
Add a location to the undo action.
addLsid(KeplerLSID) - Method in class org.kepler.objectmanager.library.LibItem
 
addLsidDependency(KeplerLSID) - Method in class org.kepler.kar.KAREntry
 
addMainAttribute(String, String) - Method in class org.kepler.kar.KARManifest
add a main manifest attribute
addMapping(SimpleMergeMapping) - Method in class org.kepler.sms.actors.MergeEditorDialog
replace current mappings with the new set
addMatch(List<String>, List<String>, XMLConfiguration, XMLConfiguration) - Static method in class org.kepler.configuration.CommonsConfigurationReader
 
addMatch(List<String>, List<String>, XMLConfiguration, XMLConfiguration) - Static method in class org.kepler.configuration.ConfigurationTest
 
addMenu(JMenu) - Method in class org.kepler.gui.frame.TabbedKeplerGraphFrame
Add a menu to the menu bar.
addMenuFor(String, Action, JComponent, Map<String, JMenuItem>) - Static method in class org.kepler.gui.MenuMapper
 
addMenuItemFactory(MenuItemFactory) - Method in class ptolemy.vergil.actor.ActorController
If access is FULL, then add the jni.ArgumentDailogFactory() to _menuFactory.
addMenuItemFactory(MenuItemFactory) - Method in class ptolemy.vergil.toolbox.PtolemyMenuFactory
Add a menu item factory to this creator.
addMenuItemFactory(MenuItemFactory) - Method in class ptolemy.vergil.tree.PTreeMenuCreator
Add a menu item factory to this creator.
addMenuItemListener(MenuItemListener) - Method in class ptolemy.vergil.toolbox.MenuActionFactory
Add a menu item listener to the list of menu item listeners.
addMetadataHandler(MetadataHandler) - Method in class org.kepler.objectmanager.ActorMetadata
this method allows other classes to add handlers to further process the metadata produced by this class.
addMicroseconds(int) - Method in class ptolemy.data.DateToken
Add microseconds to time.
addMinorVersion(int) - Method in class org.kepler.util.sql.DatabaseType
Add the minor column to the version table with a specific value.
AddMissingParameter - Class in ptolemy.moml.filter
Add a missing parameter.
AddMissingParameter() - Constructor for class ptolemy.moml.filter.AddMissingParameter
 
addMissingValueCode(String) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
Method to add missing value code into a vector.
addMissingValueCode(String) - Method in class org.ecoinformatics.seek.querybuilder.DBTableField
Method to add missing value code into a vector.
addMissingValueCode(String) - Method in class org.kepler.objectmanager.data.DataObjectDescription
Method to add missing value code into a vector.
addMissingValueCode(String) - Method in interface org.kepler.objectmanager.data.db.DSTableFieldIFace
Method to set up missing value code for this field
addMissingValueCode(String) - Method in class org.kepler.objectmanager.data.db.DSTableKeyDef
Method to add missing value code into a vector.
addModel(boolean, String, boolean) - Method in class org.kepler.sms.OntologyCatalog
 
addModel(NamedOntModel, boolean) - Method in class org.kepler.sms.OntologyCatalog
 
addModelElementClassProvider(ModelElementClassProvider) - Method in class org.ptolemy.classloading.osgi.OSGiClassLoadingStrategy
Add the given provider to the set of registered ModelElementClassProviders.
addMoMLFilter(MoMLFilter) - Static method in class ptolemy.moml.MoMLParser
Add a MoMLFilter to the end of the list of MoMLFilters used to translate names.
addMoMLFilter(MoMLFilter, Workspace) - Static method in class ptolemy.moml.MoMLParser
Add a MoMLFilter to the end of the list of MoMLFilters used to translate names.
addMoMLFilters(List) - Static method in class ptolemy.moml.MoMLParser
Add a List of MoMLFilters to the end of the list of MoMLFilters used to translate names.
addMoMLFilters(List, Workspace) - Static method in class ptolemy.moml.MoMLParser
Add a List of MoMLFilters to the end of the list of MoMLFilters used to translate names.
addNamedObj(NamedObj) - Method in class org.kepler.objectmanager.ObjectManager
Add a NamedObject to the ObjectManager.
addNamedOntClass(NamedOntClass) - Method in class org.kepler.sms.gui.OntoClassSelectionJPanel
adds the given NamedOntClass objects to the panel.
addNanoseconds(int) - Method in class ptolemy.data.DateToken
Add nanoseconds to time.
addNewDocType(DocumentType[], Vector) - Method in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
 
addNewItem(DBWhereIFace, DBWhereIFace) - Method in class org.ecoinformatics.seek.querybuilder.DBWherePanel
Helper class to add new item to main list
addNewVertexToLink(StringBuffer, StringBuffer, CompositeEntity, Link, String, double, double) - Method in class ptolemy.vergil.actor.ActorGraphModel.LinkModel
Generate the moml to add a vertex to an exist link.
addNode() - Method in class ptolemy.graph.Graph
Add an unweighted node to this graph.
addNode(Node) - Method in class ptolemy.graph.Graph
Add a pre-constructed node (unweighted or weighted).
addNode(Object, double, double) - Method in class ptolemy.vergil.basic.LocatableNodeController
Add a node to this graph editor and render it at the given location.
addNodes(Collection) - Method in class ptolemy.graph.Graph
Add a collection of nodes to the graph.
addNodeWeight(Object) - Method in class ptolemy.graph.Graph
Add a new weighted node to this graph given the node weight.
addNodeWeights(Collection) - Method in class ptolemy.graph.Graph
Add a collection of nodes to the graph.
addNotify() - Method in class org.sdm.spa.gui.DoubleShellTextAreaPanel
Override the base class to output the first prompt.
addNotify() - Method in class ptolemy.gui.ShellTextArea
Override the base class to output the first prompt.
addNotify() - Method in class ptolemy.gui.UserDialog
Override the base class to output the first prompt.
addObject(NamedOntClass) - Method in class org.kepler.sms.gui.NamedOntClassTransferable
Add the given named object to the objects contained in this transferable.
addObject(Object) - Method in class org.kepler.sms.SemanticTypeManager
Add and object to this manager
addObject(NamedObj) - Method in class ptolemy.vergil.toolbox.PtolemyTransferable
Add the given named object to the objects contained in this transferable.
addObservable(String) - Method in class org.kepler.gis.actor.pylaski.PylaskiUtilities.Settings
Adds an observable to be requested from the API.
addOperator(String) - Method in class org.ecoinformatics.seek.querybuilder.DBWherePanel
Create a new operator and two children
addOSExtensions() - Method in interface org.kepler.OSExtension
Implement this method to add OS specific extensions.
addOutputPortCounters - Variable in class org.kepler.monitor.MonitorManager
Add monitor attributes for output ports?
addOutputType(TypedAtomicActor, Type, String) - Static method in class org.kepler.sms.gui.SemanticTypeEditor
 
addPassword(String, String, String) - Method in class ptolemy.gui.Query
Create a single-line password box with the specified name, label, and default value.
addPassword(String, String, String, Color, Color) - Method in class ptolemy.gui.Query
Create a single-line password box with the specified name, label, and default value.
addPiggyback(Recording) - Method in class org.kepler.provenance.ProvenanceRecorder
Add the specified recording to the list of recordings notified for each provenance event.
addPiggyback(Executable) - Method in class ptolemy.actor.CompositeActor
Add the specified object to the set of objects whose action methods should be invoked upon invocation of the corresponding actions methods of this object.
addPiggybackForFuture(Recording) - Static method in class org.kepler.provenance.ProvenanceRecorder
Add the specified recording to the list of recordings that receive provenance events from all ProvenanceRecorders created in the future.
addPlot() - Method in class org.kepler.gui.PlotsEditorPanel
 
addPlotEditor(boolean, boolean, Plot) - Method in class org.kepler.gui.PlotsEditorPanel
 
addPoint(int, double) - Method in class ptolemy.plot.Histogram
In the specified data set, add the specified value to the histogram.
addPoint(int, double, double, boolean) - Method in class ptolemy.plot.Histogram
In the specified data set, add the specified y value to the histogram.
addPoint(int, double, double, double[], boolean) - Method in class ptolemy.plot.Plot
In the specified data set, add the specified x, y point to the plot.
addPoint(int, double, double, boolean) - Method in interface ptolemy.plot.PlotInterface
In the specified data set, add the specified x, y point to the plot.
addPoint(int, double, double, double[], boolean) - Method in interface ptolemy.plot.PlotInterface
In the specified data set, add the specified x, y point to the plot, with derivatives optionally provided for polynomial extrapolation.
addPoints() - Method in class ptolemy.plot.demo.PlotLiveDemo
Add points to the plot.
addPoints() - Method in class ptolemy.plot.PlotLive
Redefine in derived classes to add points to the plot.
AddPointToSVG - Class in org.geon
This actor accepts a point and an SVG file and adds the point to the SVG file.
AddPointToSVG(CompositeEntity, String) - Constructor for class org.geon.AddPointToSVG
Construct an actor with the given container and name.
addPointWithErrorBars(int, double, double, double[], double, double, boolean) - Method in class ptolemy.plot.Plot
In the specified data set, add the specified x, y point to the plot with error bars.
addPointWithErrorBars(int, double, double, double[], double, double, boolean) - Method in interface ptolemy.plot.PlotInterface
In the specified data set, add the specified x, y point to the plot with error bars.
addPort(String, String) - Method in class ptolemy.vergil.basic.KeplerDocumentationAttribute
Add port to the port hashtable.
addPortForwardL(String) - Method in class org.kepler.ssh.SshExec
Add a local port forwarding to an open connection.
addPortForwardR(String) - Method in class org.kepler.ssh.SshExec
Add a remote port forwarding to an open connection.
addPorts() - Method in class ptolemy.domains.modal.kernel.ia.InterfaceAutomaton
Add instances of TypedIOPort that correspond to input and output transitions, if these port do not exist.
addPrecision(Precision, Precision) - Static method in class ptolemy.math.FixPoint
Determines the Precision of an add operation between two FixPoint values.
addPrimaryKey(String, String, Vector) - Method in class org.kepler.objectmanager.data.db.DSTableDef
Adds a Primary Key to the table
addProcessListener(PNProcessListener) - Method in class ptolemy.domains.pn.kernel.PNDirector
Add a process state change listener to this director.
addProperties(List<RootConfigurationProperty>) - Method in class org.kepler.configuration.ConfigurationManager
set a list of properties all at once
addProperty(RootConfigurationProperty) - Method in class org.kepler.configuration.ConfigurationManager
add a property to the manager
addProperty(ConfigurationProperty) - Method in class org.kepler.configuration.ConfigurationProperty
add a nested property to this configuration property
addProperty(ConfigurationProperty, boolean) - Method in class org.kepler.configuration.ConfigurationProperty
add a nested property to this configuration property
addProperty(ConfigurationProperty, boolean, boolean, boolean) - Method in class org.kepler.configuration.ConfigurationProperty
add a nested property to this configuration property.
addProperty(Module, String, ConfigurationProperty) - Method in class org.kepler.configuration.ConfigurationProperty
add a new property for a given module with a given name that has the given property nested within it.
addProperty(Module, String, ConfigurationNamespace, ConfigurationProperty) - Method in class org.kepler.configuration.ConfigurationProperty
add a new property for a given module with a given name that has the given property nested within it.
addProperty(String, String) - Method in class ptolemy.vergil.basic.KeplerDocumentationAttribute
Add a property to the property hashtable.
addPropertyAtIndex(int, ConfigurationProperty) - Method in class org.kepler.configuration.ConfigurationProperty
add propertyToAdd before the beforeProperty in the ordering of the list of properties for this property
addPropertyChangeListener(PropertyChangeListener) - Method in class com.jgoodies.forms.util.DefaultUnitConverter
Adds a PropertyChangeListener to the listener list.
addPropertyChangeListener(String, PropertyChangeListener) - Method in class com.jgoodies.forms.util.DefaultUnitConverter
Adds a PropertyChangeListener to the listener list for a specific property.
addPropertyChangeListener(PropertyChangeListener) - Method in class org.kepler.monitor.MonitoredStatus
Adds a property change listener to this monitored status.
addPropertyIfNotThere(ConfigurationProperty) - Method in class org.kepler.configuration.ConfigurationProperty
add a nested property if the contents are not already present, ignoring: namespaces, modules, originmodules.
addPropertyIfNotThere(ConfigurationProperty, boolean) - Method in class org.kepler.configuration.ConfigurationProperty
 
addPropertyIfNotThereAtIndex(int, ConfigurationProperty) - Method in class org.kepler.configuration.ConfigurationProperty
add a nested property at index if the contents are not already present, ignoring: namespaces, modules, originmodules.
AddProvenanceKeyValues - Class in org.kepler.provenance.actor
An actor that adds key-value data to provenance.
AddProvenanceKeyValues(CompositeEntity, String) - Constructor for class org.kepler.provenance.actor.AddProvenanceKeyValues
 
addProvenanceRecorder(CompositeActor, ProvenanceEnabledListener, Effigy) - Static method in class org.kepler.provenance.ProvenanceRecorder
Add the default provenance recorder to a container if it does not already contain a provenance recorder.
addProxyEntity(ProxyEntity) - Method in class org.kepler.authentication.AuthenticationManager
adds a proxyEntity to the entity repository if it was authenticated outside of the AuthManager.
addPtolemyLibraryDirectoryToJavaLibraryPath() - Static method in class ptolemy.util.StringUtilities
Add the $PTII/lib directory to the java.library.path directory.
addQueryListener(QueryListener) - Method in class ptolemy.gui.Query
Add a listener.
addRadioButtons(String, String, String[], String) - Method in class ptolemy.gui.Query
Create a bank of radio buttons.
addRecordDetail(String) - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.ResultRecord
Add one or more detail attributes to the record.
addRecordingType(String, String) - Method in class org.kepler.provenance.ProvenanceRecorder
Add a recording type.
addReferral(KeplerLSID) - Method in class org.kepler.moml.NamedObjIdReferralList
Add an LSID to the referral list.
addRefinement(State, String, Entity, String, InstanceOpener) - Method in interface ptolemy.domains.modal.kernel.RefinementActor
Create a refinement for the given state.
addRefinement(State, String, Entity, String, InstanceOpener) - Method in class ptolemy.domains.modal.modal.ModalController
Create a refinement for the given state.
addRefinement(State, String, Entity, String, InstanceOpener) - Method in class ptolemy.domains.modal.modal.ModalRefinement
Create a refinement for the given state.
addRefinement(State, String, Entity, String, InstanceOpener, CompositeEntity) - Static method in class ptolemy.domains.modal.modal.ModalRefinement
Create a refinement for the given state.
addRefinement(State, String, Entity, String, InstanceOpener) - Method in class ptolemy.domains.modal.modal.Refinement
Perform no action but throw an IllegalActionException because a refinement cannot be created in an arbitrary actor-oriented refinement.
AddRefinementAction(String, String, String) - Constructor for class org.kepler.gui.frame.MultiCompositeTableau.AddRefinementAction
Create an action.
AddRefinementAction() - Constructor for class ptolemy.vergil.modal.modal.HierarchicalStateController.AddRefinementAction
 
addRegistryEntry(RegistryEntryType, String) - Method in class org.kepler.objectmanager.repository.EcogridRepository
add an ecogrid registry entry.
addRelatedGap() - Method in class com.jgoodies.forms.builder.ButtonBarBuilder
Adds the standard gap for related components.
addRelatedGap() - Method in class com.jgoodies.forms.builder.ButtonStackBuilder
Adds the standard gap for related components.
addRelation(ComponentRelation) - Method in class org.kepler.objectmanager.ActorMetadata
add a relation
addRelation(int, double) - Method in class ptolemy.domains.modal.kernel.RelationList
Construct a relation node with the given type and difference information of a relation, and add it to the end of the relation list.
AddRemoteRepositoryDialog - Class in org.kepler.gui
 
AddRemoteRepositoryDialog(Frame, String, Boolean) - Constructor for class org.kepler.gui.AddRemoteRepositoryDialog
constructor
addRenameListener(WorkflowRenameListener) - Method in class org.kepler.util.WorkflowRenameManager
Add a WorkflowRenameListener to the list of listeners.
addReportingListener(NamedObj, Effigy) - Static method in class org.kepler.reporting.ReportingListener
A the Reporting Listener to a container if it is not present.
addReportLayout(TableauFrame, ReportLayout) - Method in class org.kepler.workflow.Workflow
 
addResultsetRecordsToContainer(ResultsetType, String, CompositeEntity, Vector) - Method in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreMetaDataSpecification
Creates a DarwinCore DataSource which extends Source
addResultsetRecordsToContainer(ResultsetType, String, CompositeEntity, Vector) - Method in class org.ecoinformatics.seek.datasource.eml.eml2.EML2MetadataSpecification
Creates a the ResultRecord items (derived from Source) and adds them into the container
addResultsetRecordsToContainer(ResultsetType, String, CompositeEntity, Vector) - Method in class org.ecoinformatics.seek.ecogrid.MetadataSpecificationInterface
The ResultSet is added directly to the container
addResultsetRecordsToContainer(ResultsetType, String, CompositeEntity, Vector) - Method in class org.kepler.dataproxy.metadata.ADN.ADNMetadataSpecification
Creates GEONDataResource items (derived from Source) and adds them into the container
addReverse(Token) - Method in class ptolemy.data.AbstractConvertibleToken
Return a new token whose value is the sum of this token and the argument.
addReverse(Token) - Method in class ptolemy.data.AbstractNotConvertibleToken
Return a new token whose value is the sum of this token and the argument.
addReverse(Token) - Method in class ptolemy.data.ArrayToken
If the left-hand argument is a base type token, then convert it to an array of size one.
addReverse(Token) - Method in class ptolemy.data.MatrixToken
Return a new token whose value is the sum of this token and the argument.
addReverse(Token) - Method in class ptolemy.data.ScalarToken
Return a new token whose value is the sum of this token and the argument.
addReverse(Token) - Method in class ptolemy.data.Token
Return a new token whose value is the sum of this token and the argument.
addRowSpec(String) - Method in class org.mlc.swing.layout.ContainerLayout
 
addRowSpec(int, String) - Method in class org.mlc.swing.layout.ContainerLayout
 
addRunProperty(String, String, boolean) - Method in class org.kepler.util.WorkflowRunBuilder
 
addRunsLocally(List<WorkflowRun>) - Method in class org.kepler.workflowrunmanager.WorkflowRunManager
add runs to local list, and put in ObjectManager
addRunToSelectedRuns(KeplerLSID) - Method in class org.kepler.workflowrunmanager.WorkflowRunManager
 
addSaveInitiator(NamedObj) - Method in class org.kepler.kar.KARBuilder
Add the namedObj to the _saveInitiatorList as well as into the ObjectManager.
addSaveInitiator(ComponentEntity) - Method in class org.kepler.kar.SaveKAR
 
addSchedule(Schedule) - Method in class org.kepler.workflowscheduler.gui.ExistingSchedulePanel
Handle the event that a new schedule is added Note: this method will handle the table which displays existing schedules.
addSchedule(Schedule) - Method in class org.kepler.workflowscheduler.gui.ScheduleChangeController
Handle the event that a new schedule is added
addSchedule(Schedule) - Method in interface org.kepler.workflowscheduler.gui.ScheduleChangeListenerInterface
Handle the event that a new schedule is added
addSchedule(Schedule) - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerDialog
Handle the event that a new schedule is added
addSchedule(Schedule) - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerParentPanel
Method for ScheduleChangeListener.
addSearchType(int) - Method in class org.kepler.objectmanager.library.LibSearchConfiguration
 
addSecondaryKey(String, String, Vector) - Method in class org.kepler.objectmanager.data.db.DSTableDef
Adds a secondary key to the table
addSelectButtons(String, String, String[], Set) - Method in class ptolemy.gui.Query
Create a bank of buttons that provides a list of choices, any subset of which may be chosen at a time.
addSelectedDocumentType(SelectableDocumentType) - Method in class org.ecoinformatics.seek.ecogrid.SelectableEcoGridService
Method to add a selected document type into list
addSelectionListener(SemanticTypeBrowserSelectionListener) - Method in class org.kepler.sms.gui.SemanticTypeBrowserDialog
This method permits listeners to sign up for selection events from the dialog.
addSelectionListener(SemanticTypeBrowserSelectionListener) - Method in class org.kepler.sms.gui.SemanticTypeBrowserPane
adds a listener for selection events
addSelectionListener(OntologyDisplaySelectionListener) - Method in class org.kepler.tagging.gui.OntologyDisplayUI
 
addSelectItem(DBSelectTableModelItem) - Method in class org.ecoinformatics.seek.querybuilder.DBQueryDef
Adds an item to the selects vector
addSemanticProperty(SemanticProperty) - Method in class org.kepler.sms.KeplerIOPortSemanticLink
 
addSemanticType(String) - Method in class org.kepler.moml.KeplerActorMetadata
 
addSemanticType(String, String) - Method in class org.kepler.objectmanager.ActorMetadata
add the id of a semantic type to the metadata
addSeparator(String) - Method in class com.jgoodies.forms.builder.PanelBuilder
Adds a titled separator to the form that spans all columns.
addSeparator(String, CellConstraints) - Method in class com.jgoodies.forms.builder.PanelBuilder
Adds a titled separator to the form using the specified constraints.
addSeparator(String, String) - Method in class com.jgoodies.forms.builder.PanelBuilder
Adds a titled separator to the form using the specified constraints.
addSeparator(String, int) - Method in class com.jgoodies.forms.builder.PanelBuilder
Adds a titled separator to the form that spans the specified columns.
addSeparator() - Method in class ptolemy.gui.Query
Create a horizontal separator between components.
addService(EcoGridService) - Method in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
Add a service to service list.
AddServicesFromRegistrySearchAction - Class in org.ecoinformatics.seek.ecogrid
This action will add selected service in registry search reslut frame to current service search frame.
AddServicesFromRegistrySearchAction(String, EcogridPreferencesTab, EcogridPreferencesTab) - Constructor for class org.ecoinformatics.seek.ecogrid.AddServicesFromRegistrySearchAction
Constructor
addSHPLayer(String, String) - Method in class org.kepler.gis.display.JumpFrame
Adds a feature to the SHPLayer attribute of the JumpFrame object
addShutdownListener(ShutdownListener) - Static method in class org.kepler.util.ShutdownNotifier
Add a ShutdownListener to be called when Kepler is about to exit.
addSlider(String, String, int, int, int) - Method in class ptolemy.gui.Query
Create a slider with the specified name, label, default value, maximum, and minimum.
addSlider(String, String, int, int, int, String, String) - Method in class ptolemy.gui.Query
Create a slider with the specified name, label, default value, maximum, minimum, and label texts for the maximum and minimum slider positions.
addStateChangeListener(String, StateChangeListener) - Method in class org.kepler.gui.state.StateChangeMonitor
This method is called by objects to register a listener for changes in the application state.
addStringParameter(String) - Method in class org.kepler.provenance.RecordingParameters
Add a string parameter.
addStringParameter(String, String) - Method in class org.kepler.provenance.RecordingParameters
Add a string parameter with default value.
addStringParameterChoice(String, String) - Method in class org.kepler.provenance.RecordingParameters
Add a choice to a string parameter.
addStrut(ConstantSize) - Method in class com.jgoodies.forms.builder.ButtonBarBuilder
Adds a strut of a specified size.
addStrut(ConstantSize) - Method in class com.jgoodies.forms.builder.ButtonStackBuilder
Adds a strut of a specified size.
addStyledEntry(Settable) - Method in class ptolemy.actor.gui.PtolemyQuery
Add a new entry to this query that represents the given attribute.
addSubComposite(CompositeEntity) - Method in class org.kepler.gui.frame.TabbedKeplerGraphFrame
Create a new tab displaying the contents of a composite actor inside of an existing tab for a MultiCompositeActor.
AddSubtract - Class in ptolemy.actor.lib
A polymorphic adder/subtractor.
AddSubtract(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.AddSubtract
Construct an actor in the specified container with the specified name.
addSVGIconTo(NamedObj) - Static method in class org.kepler.icon.ComponentEntityConfig
 
addTable(int, String, int, int) - Method in class org.ecoinformatics.seek.querybuilder.DBQueryDef
Adds table item to "table" list, it will create a new DBQueryDefTable object
addTable(String) - Method in class org.ecoinformatics.seek.querybuilder.DBQueryDef
Adds table item to "from" list
addTable(DBQueryDefTable) - Method in class org.ecoinformatics.seek.querybuilder.DBQueryDef
Adds table DBQueryDefTable item to "table" list
addTable(DSTableIFace) - Method in class org.kepler.objectmanager.data.db.DSSchemaDef
Adds a DSTableDef Object to the Schema
addTableToWorkspace(String) - Method in class org.ecoinformatics.seek.querybuilder.DBTableDesktopPane
Adds a new table by name to the workspace, this method looks up the table schema and adds it
addTableToWorkspace(DBQueryDefTable) - Method in class org.ecoinformatics.seek.querybuilder.DBTableDesktopPane
Adds a new table by name to the workspace with a DBQueryDefTable object
addTabPane(TabPane, ViewPaneLocation) - Method in class org.kepler.gui.ClassicViewPane
 
addTabPane(TabPane, ViewPaneLocation) - Method in class org.kepler.gui.DefaultViewPane
 
addTabPane(TabPane, ViewPaneLocation) - Method in class org.kepler.gui.DualVerticalViewPane
 
addTabPane(TabPane, ViewPaneLocation) - Method in class org.kepler.gui.SingleViewPane
 
addTabPane(TabPane) - Method in class org.kepler.gui.TabManager
Register a TabPane with the TabManager.
addTabPane(TabPane, ViewPaneLocation) - Method in interface org.kepler.gui.ViewPane
This method is used to add a TabPane to the ViewPane specifying the location in which the TabPane should be placed.
addTabPaneListener(TableauFrame, TabPaneActionListener) - Method in class org.kepler.gui.TabManager
 
addTag(NamedOntClass) - Method in class org.kepler.tagging.gui.ExistingTagsPanel
 
addTag(NamedOntClass, Collection<NamedObj>) - Method in class org.kepler.tagging.gui.ExistingTagsPanel
 
addTag(NamedOntClass, NamedObj) - Method in class org.kepler.tagging.gui.ExistingTagsPanel
 
addTag(NamedObj, NamedOntClass, PtolemyFrame) - Static method in class org.kepler.tagging.Tagging
Add a tag to the named object
addTag(String, String) - Method in class org.kepler.util.WorkflowRunBuilder
 
addTagEventListener(TagEventListener) - Method in class org.kepler.tagging.gui.TagBarUI
 
addTagEventListener(TagEventListener, KeplerGraphFrame) - Static method in class org.kepler.tagging.gui.TagBarUI
Add a TagEventListener for a specific frame.
addTargetPort(IOPort) - Method in class org.kepler.sms.actors.MergeEditorDialog
adds the given target port
addTest() - Static method in class org.kepler.configuration.ConfigurationTest
 
addText(String, Color, int) - Method in class ptolemy.gui.Query
Add text to the query.
addTextArea(String, String, String) - Method in class ptolemy.gui.Query
Create a text area.
addTextArea(String, String, String, Color, Color) - Method in class ptolemy.gui.Query
Create a text area.
addTextArea(String, String, String, Color, Color, int, int) - Method in class ptolemy.gui.Query
Create a text area with the specified height and width (in characters).
addThread(Thread) - Method in class ptolemy.actor.process.ProcessDirector
Notify this director that the specified thread is part of the execution of this model.
addTitle(String) - Method in class com.jgoodies.forms.builder.PanelBuilder
Adds a title label to the form using the default constraints.
addTitle(String, CellConstraints) - Method in class com.jgoodies.forms.builder.PanelBuilder
Adds a title label to the form using the specified constraints.
addTitle(String, String) - Method in class com.jgoodies.forms.builder.PanelBuilder
Adds a title label to the form using the specified constraints.
addToCache(NamedOntClass) - Method in class org.kepler.tagging.TagCache
 
addTokens(String, List<Token>) - Static method in class org.kepler.ddp.actor.pattern.DDPDataSink
Set a list of tokens for a specific DDPDataSink actor.
addToLibrary(Unit) - Static method in class ptolemy.moml.unit.UnitLibrary
Add a unit to the Library.
addToMenuAndToolbar(JMenu, JToolBar) - Method in class ptolemy.vergil.actor.ActorEditorGraphController
Add commands to the specified menu and toolbar, as appropriate for this controller.
addToMenuAndToolbar(JMenu, JToolBar) - Method in class ptolemy.vergil.basic.BasicGraphController
Add commands to the specified menu and toolbar, as appropriate for this controller.
addToMenuAndToolbar(JMenu, JToolBar) - Method in class ptolemy.vergil.basic.RunnableGraphController
Add execution commands to the toolbar.
addToMenuAndToolbar(JMenu, JToolBar) - Method in class ptolemy.vergil.icon.EditIconGraphController
Add hot key for look inside.
addToMenuAndToolbar(JMenu, JToolBar) - Method in class ptolemy.vergil.modal.FSMGraphController
Add commands to the specified menu and toolbar, as appropriate for this controller.
addToMenuAndToolbar(JMenu, JToolBar) - Method in class ptolemy.vergil.modal.ia.InterfaceAutomatonGraphController
Add commands to the specified menu and toolbar, as appropriate for this controller.
addToolBarButton(JComponent, Action) - Static method in class org.kepler.tagging.gui.ToolbarUtilities
Add the action to the given toolbar.
addToolBarButton(JComponent, Action, String, Icon) - Static method in class org.kepler.tagging.gui.ToolbarUtilities
Add an action to the toolbar.
addToolBarButton(JComponent, Action, String, Icon, boolean) - Static method in class org.kepler.tagging.gui.ToolbarUtilities
Add an action to the toolbar.
addToolBarButton(JComponent, Action, String, String) - Static method in class org.kepler.tagging.gui.ToolbarUtilities
Add an action to the toolbar.
addToolBarButton(JComponent, Action, String, Icon, String) - Static method in class org.kepler.tagging.gui.ToolbarUtilities
Add an action to the toolbar.
addToolBarButton(JComponent, Action, String, Icon, String, boolean) - Static method in class org.kepler.tagging.gui.ToolbarUtilities
Add an action to the toolbar.
addToSearchIndex(LibItem) - Method in class org.kepler.objectmanager.library.LibIndex
Add the given LibItem to the search index.
addToSubset(NamedObj) - Method in class org.kepler.gui.SubsetWorkflowOutlineTreeModel
Add an object to the subset tree.
addTreeModelListener(TreeModelListener) - Method in class org.kepler.gui.FilteredVisibleTreeModel
 
addTreeModelListener(TreeModelListener) - Method in class org.sdm.spa.gui.XMLUIP.DomToTreeModelAdapter
 
addTreeModelListener(TreeModelListener) - Method in class ptolemy.vergil.tree.EntityTreeModel
Add a listener to this model.
addTreeSingleSelectionListener(TreeSelectionListener) - Method in class org.kepler.gui.ComponentLibraryTab
Set the selection of the JTree (result) in this panel to single selection, and add a selection listener to it.
addType(Object, Object) - Method in class org.kepler.sms.SemanticTypeManager
Assign a concept id to the given object.
addType(Type, String, Class) - Static method in class ptolemy.data.type.BaseType
Specify that the given type, with the given name, is implemented by the specified token class.
addTypeListener(TypeListener) - Method in class ptolemy.actor.TypedIOPort
Add a type listener to this port.
addUnchecked(double) - Method in class ptolemy.actor.util.Time
Add the specified double to this time without checking whether the specified double is too large to ensure the time resolution of the director.
addUnitsArray(int[], int[]) - Static method in class ptolemy.data.unit.UnitUtilities
Add the given unit arrays, and return the result in a new array.
addUnitTerm(UnitTerm) - Method in class ptolemy.moml.unit.UnitExpr
Add a UnitTerm to the expression.
addUnrelatedGap() - Method in class com.jgoodies.forms.builder.ButtonBarBuilder
Adds the standard gap for unrelated components.
addUnrelatedGap() - Method in class com.jgoodies.forms.builder.ButtonStackBuilder
Adds the standard gap for unrelated components.
addUpdater(KeplerGraphFrameUpdater) - Static method in class org.kepler.gui.KeplerGraphFrame
Add a KeplerGraphFrameUpdater to the set of updaters that can make changes to components, e.g., the toolbar or menus.
addUser(String, String, String, String, String, String) - Method in class org.geon.LidarJobDB
Add or update user to access/pending access list.
addValue(ItemValue) - Method in class org.kepler.reporting.rio.Item
 
addValueListener(ValueListener) - Method in class org.kepler.moml.DependencyAttribute
add a valueListener
addValueListener(ValueListener) - Method in class org.kepler.moml.NamedObjId
add a valueListener
addValueListener(ValueListener) - Method in class org.kepler.moml.PortAttribute
add a valueListener
addValueListener(ValueListener) - Method in class ptolemy.actor.LocalClock
This method has to be implemented for the AbstractSettableAttribute interface.
addValueListener(ValueListener) - Method in class ptolemy.data.expr.Variable
Add a listener to be notified when the value of this variable changes.
addValueListener(ValueListener) - Method in class ptolemy.domains.modal.kernel.FSMTransitionParameter
Add value listener.
addValueListener(ValueListener) - Method in class ptolemy.kernel.util.ConfigurableAttribute
Add a listener to be notified when the value of this attribute changes.
addValueListener(ValueListener) - Method in class ptolemy.kernel.util.Location
Add a listener to be notified when the value of this attribute changes.
addValueListener(ValueListener) - Method in interface ptolemy.kernel.util.Settable
Add a listener to be notified when the value of this settable object changes.
addValueListener(ValueListener) - Method in class ptolemy.kernel.util.StringAttribute
Add a listener to be notified when the value of this attribute changes.
addValueListener(ValueListener) - Method in class ptolemy.moml.unit.UnitAttribute
Add a listener to be notified when the value of this attribute changes.
addValueListener(ValueListener) - Method in class ptolemy.vergil.actor.LayoutHint
Add a listener to be notified when the value of this attribute changes.
addValueListener(ValueListener) - Method in class ptolemy.vergil.actor.lib.MonitorReceiverAttribute
Add a listener to be notified when the value of this settable object changes.
addValueListener(ValueListener) - Method in class ptolemy.vergil.kernel.attributes.AttributeValueAttribute
Add a listener to be notified when the value of this settable object changes.
addViewPane(ViewPane) - Method in class org.kepler.gui.ViewManager
Register a ViewPane with the ViewManager.
addWorkflowRunManagerEventListener(WorkflowRunManagerEventListener) - Method in class org.kepler.workflowrunmanager.WorkflowRunManager
 
addXML(File) - Method in class org.kepler.objectmanager.library.LibraryManager
Update the LibIndex and tree model for a XML file.
addXTick(String, double) - Method in class ptolemy.plot.PlotBox
Specify a tick mark for the X axis.
addXTick(String, double) - Method in interface ptolemy.plot.PlotBoxInterface
Specify a tick mark for the X axis.
addYTick(String, double) - Method in class ptolemy.plot.PlotBox
Specify a tick mark for the Y axis.
addYTick(String, double) - Method in interface ptolemy.plot.PlotBoxInterface
Specify a tick mark for the Y axis.
adjustBeginLineColumn(int, int) - Method in class ptolemy.data.expr.SimpleCharStream
Method to adjust line and column numbers for the start of a token.
adjustBeginLineColumn(int, int) - Method in class ptolemy.moml.unit.SimpleCharStream
Method to adjust line and column numbers for the start of a token.
adjustEditable(Settable, Component) - Method in class ptolemy.actor.gui.PtolemyQuery
Adjust the editability of the component depending on whether the attribute has Settable.NOT_EDITABLE visibility and if the _exportMode attribute is set in the container.
adjustFileMenu() - Method in class ptolemy.actor.gui.TextEditor
Allow subclasses to adjust the file menu after packing.
adjustFileMenu() - Method in class ptolemy.vergil.toolbox.TextEditorForStringAttributes
Adjust the file menu so that only relevant items appear.
adjustmentValueChanged(AdjustmentEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBTableFrame
Makes sure the Join lines gets drawn by dirtying
adjustmentValueChanged(AdjustmentEvent) - Method in class org.kepler.gui.KeplerGraphFrame.ScrollBarListener
translate the model when the scrollbars move
adjustmentValueChanged(AdjustmentEvent) - Method in class org.kepler.reporting.gui.ScrollbarAdjustmentListener
 
ADNMetadataSpecification - Class in org.kepler.dataproxy.metadata.ADN
This class is a plugin for adn namespace to transfer query group to ecogrid query type.
ADNMetadataSpecification() - Constructor for class org.kepler.dataproxy.metadata.ADN.ADNMetadataSpecification
Default constructor
ADNNAMESPACE - Static variable in class org.kepler.dataproxy.metadata.ADN.ADNMetadataSpecification
 
ADV_BUTTON_CAPTION - Static variable in class org.kepler.gui.SearchUIJPanel
 
advance(Time, int) - Method in interface ptolemy.actor.continuous.Advanceable
Advance to the specified time.
Advanceable - Interface in ptolemy.actor.continuous
Interface for actors and directors that, unlike native Ptolemy II actors, do not proactively notify their director (using fireAt()) of events in the future that they might produce, but which may, nevertheless, require execution at some future time.
ADVANCED - Static variable in interface org.ecoinformatics.seek.querybuilder.QBBuilderInterface
 
advancedSearch(Reader, boolean) - Method in class org.kepler.objectmanager.repository.EcogridRepository
Search the repository and return an iterator of EcogridRepositoryResults.
AFTER_FIRE - Static variable in class ptolemy.actor.FiringEvent
This type of event is published after a fire method is called.
AFTER_ITERATE - Static variable in class ptolemy.actor.FiringEvent
This type of event is published after an iterate method is called.
AFTER_POSTFIRE - Static variable in class ptolemy.actor.FiringEvent
This type of event is published after a postfire method is called.
AFTER_PREFIRE - Static variable in class ptolemy.actor.FiringEvent
This type of event is published after a prefire method is called.
AFTER_RW_FIRE - Static variable in class ptolemy.actor.FiringEvent
The type of event published as part of the Kepler sql actor.
afterClass() - Static method in class ptolemy.util.test.junit.AutoTests
If the VertxHelperBase class is present, then invoke the closeVertx() method so that this process does not wait around for the Vert.x threads.
algorithm - Variable in class org.ecoinformatics.seek.gis.java_gis.AscGridValue
This is the algoritm to be used in calculating cell values in the output grid from the values in the input grid Currently there are two choices: 'Nearest Neighbor' or 'Inverse Distance Weighted'
algorithm - Variable in class org.ecoinformatics.seek.gis.java_gis.GridRescaler
This is the algoritm to be used in calculating cell values in the output grid from the values in the input grid Currently there are two choices: 'Nearest Neighbor' or 'Inverse Distance Weighted'
align(Token[], Time) - Static method in class ptolemy.data.SmoothToken
Given an array of Tokens and a time, align them by extrapolating all tokens that are instances of SmoothToken to that time, and returning an array of tokens with the extrapolated values and derivatives.
align(Token[]) - Static method in class ptolemy.data.SmoothToken
Given an array of Tokens, align them by finding the maximum time of all the tokens, extrapolating all tokens that are instances of SmoothToken to that time, and returning an array of tokens with the extrapolated values and derivatives.
alignedSequence - Variable in class org.sdm.spa.actors.piw.viz.Sequence
 
alignLimit - Variable in class org.kepler.bio.actor.BlastTabularResultMerge
The parameter, which is an integer for alignments limits of one query sequence, which is the value of "-b" option for blast command.
AlignmentEditor_Seaview - Class in org.cipres.kepler
Given an alignment, the AlignmentEditor_Seaview actor displays the alignment in the seaview window and facititates the user to edit the alignment.
AlignmentEditor_Seaview(CompositeEntity, String) - Constructor for class org.cipres.kepler.AlignmentEditor_Seaview
Construct a AlignmentEditor_Seaview actor with the given container and name.
all - Variable in class org.sdm.spa.XPath
The text resulting from applying the XPath expression.
ALL_CHOICES_NAME - Static variable in class org.kepler.ddp.actor.ExecutionChoice
String constant to denote all execution choices.
ALL_FIELDS - Static variable in class org.ecoinformatics.seek.querybuilder.DBUIUtils
 
allAtomicEntityList() - Method in class ptolemy.kernel.CompositeEntity
Return a list that consists of all the atomic entities in a model.
ALLCHANNELS - Static variable in class ptolemy.actor.IOPortEvent
The token was broadcast on all channels.
allColumnGroups - Variable in class org.kepler.workflowrunmanager.gui.GroupableTableColumnModel
 
AllEdgeSingleSourceLongestPathStrategy - Class in ptolemy.graph.analysis.strategy
An analyzer used to find the longest path from a single source.
AllEdgeSingleSourceLongestPathStrategy(Graph, Node, ToDoubleMapping) - Constructor for class ptolemy.graph.analysis.strategy.AllEdgeSingleSourceLongestPathStrategy
Construct an instance of this analyzer.
allFilters() - Static method in class ptolemy.moml.filter.BackwardCompatibility
Return a shallow copy of the list where each element of the list is a MoMLFilter to be applied to handle backward compatibility.
allocCopy(Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new matrix that is a copy of the matrix argument.
allocCopy(double[]) - Static method in class ptolemy.math.DoubleArrayMath
Return a new array that is a copy of the array argument.
allocCopy(double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new matrix that is a copy of the matrix argument.
allocCopy(float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Return a new matrix that is a copy of the matrix argument.
allocCopy(Fraction[]) - Static method in class ptolemy.math.FractionArrayMath
Return a new array that is a copy of the array argument.
allocCopy(Fraction[][]) - Static method in class ptolemy.math.FractionMatrixMath
Return a new matrix that is a copy of the matrix argument.
allocCopy(int[]) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array that is a copy of the array argument.
allocCopy(int[][]) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new matrix that is a copy of the matrix argument.
allocCopy(long[]) - Static method in class ptolemy.math.LongArrayMath
Return a new array that is a copy of the array argument.
allocCopy(long[][]) - Static method in class ptolemy.math.LongMatrixMath
Return a new matrix that is a copy of the matrix argument.
allOntologiesName - Variable in class org.kepler.gui.ComponentLibraryTab
 
allowDisconnectedGraphs - Variable in class ptolemy.domains.sdf.kernel.SDFDirector
A parameter representing whether disconnected graphs are permitted.
allowDuplicates - Variable in class ptolemy.actor.lib.ArraySort
Tells the actor whether or not to remove duplicate elements.
allowEmptyDirectory - Variable in class ptolemy.actor.lib.io.DirectoryListing
If true, and directoryOrURL refers to a local directory (not a URL), that is empty, then the output will be empty string array and no exception is reported.
allowLevelCrossingConnect(boolean) - Method in class ptolemy.kernel.CompositeEntity
Allow or disallow connections that are created using the connect() method to cross levels of the hierarchy.
allowMask - Variable in class org.kepler.actor.ssh.FileRemover
Specifying whether wildcards (* and ?)
allowRateChanges - Variable in class ptolemy.domains.sdf.kernel.SDFDirector
A parameter representing whether dynamic rate changes are permitted.
AllPairShortestPathAnalysis - Class in ptolemy.graph.analysis
An analysis to compute of the all pair shortest path of a directed graph.
AllPairShortestPathAnalysis(Graph, ToDoubleMapping) - Constructor for class ptolemy.graph.analysis.AllPairShortestPathAnalysis
Construct an instance of this class with a default analyzer.
AllPairShortestPathAnalysis(AllPairShortestPathAnalyzer) - Constructor for class ptolemy.graph.analysis.AllPairShortestPathAnalysis
Construct an instance of this class with a given analyzer.
AllPairShortestPathAnalyzer - Interface in ptolemy.graph.analysis.analyzer
An interface for all the analyzers that compute the all pair shortest path of a directed graph.
ALLSERVICES - Static variable in class org.ecoinformatics.seek.ecogrid.RegistrySearchDialog
 
alpha - Variable in class ptolemy.actor.lib.colt.ColtBeta
Alpha.
alpha - Variable in class ptolemy.actor.lib.colt.ColtGamma
The mean, or alpha.
alphabet - Variable in class ptolemy.actor.lib.comm.HuffmanBasic
The alphabet of the input.
alternate - Variable in class ptolemy.actor.lib.Default
The alternate input port.
ALTERNATE_LIBRARY_POPUP_ATTRIBUTE_NAME - Static variable in class org.kepler.gui.AnnotatedPTree
 
alternateDelete(Object[], AbstractBasicGraphModel, NamedObj) - Static method in class ptolemy.vergil.basic.BasicGraphFrameExtension
Delete the Ptolemy objects represented by the selection.
AlternateGetMoml - Class in org.kepler.objectmanager.repository
Created by IntelliJ IDEA.
AlternateGetMoml() - Constructor for class org.kepler.objectmanager.repository.AlternateGetMoml
 
alternatePaste(NamedObj, StringBuffer) - Static method in class ptolemy.vergil.basic.BasicGraphFrameExtension
Paste the Ptolemy objects represented by the value of the moml argument into the container.
alternatePasteMomlModification(NamedObj, StringBuffer) - Static method in class ptolemy.vergil.basic.BasicGraphFrameExtension
Paste the Ptolemy objects represented by the value of the moml argument into the container.
AlternatingSimulation - Class in ptolemy.domains.modal.kernel.test
Compute the alternating simulation of two interface automata.
AlternatingSimulation(String, String, boolean) - Constructor for class ptolemy.domains.modal.kernel.test.AlternatingSimulation
Compute the alternating simulation from the sub automaton to the super one and list the result to stdout.
alwaysFlush - Variable in class ptolemy.actor.lib.io.LineWriter
If true, flush output after each line is written.
AMP - Static variable in class org.json.XML
The Character '&'.
Analysis - Class in ptolemy.graph.analysis
A base class for analyses on graphs.
Analysis(GraphAnalyzer) - Constructor for class ptolemy.graph.analysis.Analysis
Construct an analysis using a given analyzer.
AnalysisException - Exception in ptolemy.graph.analysis
Base exception for non-checked exceptions in the analyses package.
AnalysisException() - Constructor for exception ptolemy.graph.analysis.AnalysisException
The default constructor without arguments.
AnalysisException(String) - Constructor for exception ptolemy.graph.analysis.AnalysisException
Constructor with a text description as argument.
AnalysisException(String, Throwable) - Constructor for exception ptolemy.graph.analysis.AnalysisException
Constructor with a text description and cause as argument.
analyzer() - Method in class ptolemy.graph.analysis.Analysis
Return the analyzer associated with this analysis class.
Analyzer - Interface in ptolemy.graph.analysis.analyzer
A base interface for all the analyzers.
anchor - Variable in class ptolemy.vergil.kernel.attributes.AbstractTextAttribute
Indication of which point of the text should be aligned to the grid.
anchorSeparator - Static variable in class org.kepler.objectmanager.lsid.KeplerLSID
 
anchorSeparatorChar - Static variable in class org.kepler.objectmanager.lsid.KeplerLSID
 
AND - Static variable in class org.ecoinformatics.seek.dataquery.DBTablesGenerator
 
and(BooleanToken) - Method in class ptolemy.data.BooleanToken
Return a new token whose value is the logical AND of the value of this token and the the value of the argument token.
AND - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
AND_OPER - Static variable in class org.ecoinformatics.seek.querybuilder.DBWhereOperator
 
andOrConditions - Variable in class org.ecoinformatics.seek.ecogrid.quicksearch.SearchQuery
 
ANEMPTYSPACE - Static variable in class org.camera.service.ServiceUtils
 
ANEMPTYSPACE - Static variable in class org.kepler.actor.rest.ServiceUtils
 
angle - Variable in class ptolemy.actor.lib.conversions.CartesianToPolar
The angle component of the output pair, which has type DoubleToken.
angle - Variable in class ptolemy.actor.lib.conversions.ComplexToPolar
The output port for the angle component, which has type DoubleToken.
angle - Variable in class ptolemy.actor.lib.conversions.PolarToCartesian
The input port for the angle component (in radians), which has type DoubleToken.
angle - Variable in class ptolemy.actor.lib.conversions.PolarToComplex
The input port for the angle component (in radians), which has type DoubleToken.
angle() - Method in class ptolemy.math.Complex
Return the angle or argument of this complex number.
angle(Complex) - Static method in class ptolemy.math.Complex
Return the angle or argument of this complex number.
AnimationRenderer - Class in ptolemy.vergil.kernel
An implementation of a selection renderer that is used for animation.
AnimationRenderer() - Constructor for class ptolemy.vergil.kernel.AnimationRenderer
Create a new selection renderer with the default prototype decorator.
AnimationRenderer(Color) - Constructor for class ptolemy.vergil.kernel.AnimationRenderer
Create a new selection renderer with the default prototype decorator using the specified color.
AnimationRenderer(Color, float) - Constructor for class ptolemy.vergil.kernel.AnimationRenderer
Create a new selection renderer with the default prototype decorator using the specified color and halo size.
AnimationRenderer(Color, Stroke) - Constructor for class ptolemy.vergil.kernel.AnimationRenderer
Create a new selection renderer with the default prototype decorator using the specified color and stroke.
AnimationRenderer(FigureDecorator) - Constructor for class ptolemy.vergil.kernel.AnimationRenderer
Create a new renderer with the given prototype decorator.
AnnotateComponentAction - Class in org.kepler.sms.gui
 
AnnotateComponentAction(TableauFrame) - Constructor for class org.kepler.sms.gui.AnnotateComponentAction
REQUIRED ***** Constructor
AnnotatedActorFirePTree - Class in org.kepler.profiling.gui
A annotated tree and tree cell renderer showing actor execution times.
AnnotatedActorFirePTree(TreeModel, Component, boolean, NamedObj) - Constructor for class org.kepler.profiling.gui.AnnotatedActorFirePTree
 
AnnotatedActorIOPTree - Class in org.kepler.profiling.gui
A annotated tree and tree cell renderer showing port I/O amounts.
AnnotatedActorIOPTree(TreeModel, Component, boolean, NamedObj) - Constructor for class org.kepler.profiling.gui.AnnotatedActorIOPTree
 
AnnotatedPTree - Class in org.kepler.gui
A Wrapper class that adds right click support and custom Kepler Ontology icons to a PTree
AnnotatedPTree(TreeModel, Component) - Constructor for class org.kepler.gui.AnnotatedPTree
Constructor
AnnotatedPTree(TreeModel, Component, boolean) - Constructor for class org.kepler.gui.AnnotatedPTree
 
AnnotatedPTreePopupListener - Class in org.kepler.gui
 
AnnotatedPTreePopupListener(AnnotatedPTree) - Constructor for class org.kepler.gui.AnnotatedPTreePopupListener
 
annotateGraph() - Method in class ptolemy.moml.unit.Solution
Annotates the model so that when it is displayed it will be color coded and have tooltips that will convey various aspects of the solution.
annotation - Variable in class ptolemy.domains.modal.kernel.Transition
An annotation that describes the transition.
AnnotationEditorFactory - Class in ptolemy.vergil.toolbox
Deprecated.
Use ptolemy.vergil.kernel.attributes.TextAttribute.
AnnotationEditorFactory(NamedObj, String) - Constructor for class ptolemy.vergil.toolbox.AnnotationEditorFactory
Deprecated.
Construct a factory with the specified container and name.
AnnotationEditorFactory.AnnotationTextEditor - Class in ptolemy.vergil.toolbox
Deprecated.
A text widget for editing textual annotations (which are visible attributes).
AnnotationEngine - Class in org.ecoinformatics.seek.sms
AnnotationEngine Interface { AnnotationEngine instance() Vector getDefaultConceptNames() void addActorAnnotation(String lsid, String conceptName) EntityTreeModel buildDefaultActorLibrary() Vector search(String classname) Vector search(String classname, boolean approx) }
AnnotationEngine() - Constructor for class org.ecoinformatics.seek.sms.AnnotationEngine
Constructor
AnnotationTextEditor(JTextArea) - Constructor for class ptolemy.vergil.toolbox.AnnotationEditorFactory.AnnotationTextEditor
Deprecated.
Create an annotation text editor.
AnythingToDouble - Class in ptolemy.actor.lib.conversions
Deprecated.
Use ptolemy.actor.lib.conversions.ExpressionToToken or StringToDouble.
AnythingToDouble(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.conversions.AnythingToDouble
Deprecated.
Construct an actor with the given container and name.
APOS - Static variable in class org.json.XML
The Character '''.
App - Interface in org.kepler.webview.server.app
Interface for WebView server apps.
appearanceCount(Object) - Method in class ptolemy.graph.sched.Schedule
The number of times the given firing element appears in the schedule.
append(Component) - Method in class com.jgoodies.forms.builder.DefaultFormBuilder
Adds a component to the panel using the default constraints with a column span of 1.
append(Component, int) - Method in class com.jgoodies.forms.builder.DefaultFormBuilder
Adds a component to the panel using the default constraints with the given columnSpan.
append(Component, Component) - Method in class com.jgoodies.forms.builder.DefaultFormBuilder
Adds two components to the panel; each component will span a single data column.
append(Component, Component, Component) - Method in class com.jgoodies.forms.builder.DefaultFormBuilder
Adds three components to the panel; each component will span a single data column.
append(String) - Method in class com.jgoodies.forms.builder.DefaultFormBuilder
Adds a text label to the panel and proceeds to the next column.
append(String, Component) - Method in class com.jgoodies.forms.builder.DefaultFormBuilder
Adds a text label and component to the panel.
append(String, Component, boolean) - Method in class com.jgoodies.forms.builder.DefaultFormBuilder
Adds a text label and component to the panel; the component will span the specified number columns.
append(String, Component, int) - Method in class com.jgoodies.forms.builder.DefaultFormBuilder
Adds a text label and component to the panel; the component will span the specified number columns.
append(String, Component, Component) - Method in class com.jgoodies.forms.builder.DefaultFormBuilder
Adds a text label and two components to the panel; each component will span a single column.
append(String, Component, Component, int) - Method in class com.jgoodies.forms.builder.DefaultFormBuilder
Adds a text label and two components to the panel; each component will span a single column.
append(String, Component, Component, Component) - Method in class com.jgoodies.forms.builder.DefaultFormBuilder
Adds a text label and three components to the panel; each component will span a single column.
append(String, Component, Component, Component, Component) - Method in class com.jgoodies.forms.builder.DefaultFormBuilder
Adds a text label and four components to the panel; each component will span a single column.
append(DBWhereIFace) - Method in class org.ecoinformatics.seek.querybuilder.DBWhereOperator
Adds new item "at the end of the list
append - Variable in class org.geon.BinaryFileWriter
If true, then append to the specified file.
append - Variable in class org.geon.FileCopy
If true, then append to the specified file.
append(String, Object) - Method in class org.json.JSONObject
Append values to the array under a key.
append - Variable in class org.kepler.actor.Logger
If true, always append the new log info to the log file.
append - Variable in class org.srb.SGet
Append when SRB file is copied to loalFile
append(Token) - Method in class ptolemy.actor.gui.MatrixTokenTableau
Display the specified token.
append(List) - Method in class ptolemy.actor.gui.MatrixTokenTableau
Display the specified tokens.
append(Token) - Method in class ptolemy.actor.gui.TokenEffigy
Append the specified token to the token array associated with this effigy.
append(Token) - Method in class ptolemy.actor.gui.TokenTableau
Append the specified token to the display.
append(List) - Method in class ptolemy.actor.gui.TokenTableau
Append the specified tokens to the display.
append(Token) - Method in class ptolemy.actor.lib.image.ImageTableau
Display the specified token.
append(List) - Method in class ptolemy.actor.lib.image.ImageTableau
Display the specified tokens.
append - Variable in class ptolemy.actor.lib.io.LineWriter
If true, then append to the specified file.
append(ArrayToken) - Method in class ptolemy.data.ArrayToken
Append the given array to the end of this array, and return the resulting array.
append(ArrayToken[]) - Static method in class ptolemy.data.ArrayToken
Append the given arrays.
append(Nameable) - Method in class ptolemy.kernel.util.NamedList
Add an element to the end of the list.
append(Complex[], Complex[]) - Static method in class ptolemy.math.ComplexArrayMath
Return a new array that is the result of appending array2 to the end of array1.
append(Complex[], int, int, Complex[], int, int) - Static method in class ptolemy.math.ComplexArrayMath
Return a new array that is the result of appending length2 elements of array2, starting from the idx2th element, to length1 elements of array1, starting from the idx1th element.
append(double[], double[]) - Static method in class ptolemy.math.DoubleArrayMath
Return a new array that is the result of appending array2 to the end of array1.
append(double[], int, int, double[], int, int) - Static method in class ptolemy.math.DoubleArrayMath
Return a new array that is the result of appending length2 elements of array2, starting from the array2[idx2] to length1 elements of array1, starting from array1[idx1].
append(float[], float[]) - Static method in class ptolemy.math.FloatArrayMath
Return a new array that is the result of appending array2 to the end of array1.
append(float[], int, int, float[], int, int) - Static method in class ptolemy.math.FloatArrayMath
Return a new array that is the result of appending length2 elements of array2, starting from the array1[idx2] to length1 elements of array1, starting from array1[idx1].
append(Fraction[], Fraction[]) - Static method in class ptolemy.math.FractionArrayMath
Return a new array that is the result of appending array2 to the end of array1.
append(Fraction[], int, int, Fraction[], int, int) - Static method in class ptolemy.math.FractionArrayMath
Return a new array that is the result of appending length2 elements of array2, starting from the array2[idx2] to length1 elements of array1, starting from array1[idx1].
append(int[], int[]) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array that is the result of appending array2 to the end of array1.
append(int[], int, int, int[], int, int) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array that is the result of appending length2 elements of array2, starting from the array1[idx2] to length1 elements of array1, starting from array1[idx1].
append(long[], long[]) - Static method in class ptolemy.math.LongArrayMath
Return a new array that is the result of appending array2 to the end of array1.
append(long[], int, int, long[], int, int) - Static method in class ptolemy.math.LongArrayMath
Return a new array that is the result of appending length2 elements of array2, starting from the array1[idx2] to length1 elements of array1, starting from array1[idx1].
appendClosingUndoMoML(String) - Method in class ptolemy.moml.UndoContext
Append some MoML to be appended after the undo MoML for child nodes.
appendColumn(ColumnSpec) - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Appends the given column specification to the builder's layout.
appendColumn(String) - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Appends a column specification to the builder's layout that represents the given string encoding.
appendColumn(ColumnSpec) - Method in class com.jgoodies.forms.layout.FormLayout
Appends the given column specification to the right hand side of all columns.
appendElement(StringBuffer, String, String) - Static method in class org.kepler.objectmanager.data.DataObjectDescription
Utility for writing out XML elements
appendGlueColumn() - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Appends a glue column.
appendGlueRow() - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Appends a glue row.
appendI15d(String) - Method in class com.jgoodies.forms.builder.DefaultFormBuilder
Adds an internationalized (i15d) text label to the panel using the given resource key and proceeds to the next column.
appendI15d(String, Component) - Method in class com.jgoodies.forms.builder.DefaultFormBuilder
Adds an internationalized (i15d) text label and component to the panel.
appendI15d(String, Component, boolean) - Method in class com.jgoodies.forms.builder.DefaultFormBuilder
Adds an internationalized (i15d) text label and component to the panel.
appendI15d(String, Component, int) - Method in class com.jgoodies.forms.builder.DefaultFormBuilder
Adds an internationalized (i15d) text label to the panel using the given resource key; then proceeds to the next data column and adds a component with the given column span.
appendI15d(String, Component, Component) - Method in class com.jgoodies.forms.builder.DefaultFormBuilder
Adds an internationalized (i15d) text label and two components to the panel; each component will span a single column.
appendI15d(String, Component, Component, int) - Method in class com.jgoodies.forms.builder.DefaultFormBuilder
Adds an internationalized (i15d) text label and two components to the panel; each component will span a single column.
appendI15d(String, Component, Component, Component) - Method in class com.jgoodies.forms.builder.DefaultFormBuilder
Adds an internationalized (i15d) text label and three components to the panel; each component will span a single column.
appendI15d(String, Component, Component, Component, Component) - Method in class com.jgoodies.forms.builder.DefaultFormBuilder
Adds an internationalized (i15d) text label and four components to the panel; each component will span a single column.
appendI15dSeparator(String) - Method in class com.jgoodies.forms.builder.DefaultFormBuilder
Appends an internationalized titled separator for the given resource key that spans all columns.
appendI15dTitle(String) - Method in class com.jgoodies.forms.builder.DefaultFormBuilder
Adds an internationalized title label to the panel and proceeds to the next column.
appendJTextArea(String) - Method in class ptolemy.gui.JTextAreaExec
Append the text message to the JTextArea and include a trailing newline.
appendJTextArea(String) - Method in class ptolemy.gui.ShellTextArea
Append the specified text to the JTextArea and update the prompt cursor.
appendLabelComponentsGapColumn() - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Appends a column that is the default gap between a label and its associated component.
appendMoMLDescription(String) - Method in class ptolemy.moml.MoMLAttribute
Append to the MoML description of this object.
appendNewLine(String) - Static method in class org.kepler.util.FileUtil
 
appendParagraphGapRow() - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Appends a row that is the default gap for paragraphs.
appendRelatedComponentsGapColumn() - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Appends a column that is the default gap for related components.
appendRelatedComponentsGapRow() - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Appends a row that is the default gap for related components.
appendRow(RowSpec) - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Appends the given row specification to the builder's layout.
appendRow(String) - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Appends a row specification to the builder's layout that represents the given string encoding.
appendRow(RowSpec) - Method in class com.jgoodies.forms.layout.FormLayout
Appends the given row specification to the bottom of all rows.
appendSeparator() - Method in class com.jgoodies.forms.builder.DefaultFormBuilder
Adds a separator without text that spans all columns.
appendSeparator(String) - Method in class com.jgoodies.forms.builder.DefaultFormBuilder
Adds a separator with the given text that spans all columns.
appendShell1(String) - Method in class org.sdm.spa.gui.DoubleShellTextAreaPanel
 
appendShell2(String) - Method in class org.sdm.spa.gui.DoubleShellTextAreaPanel
Append the specified text to the JTextArea and update the prompt cursor.
appendText(String) - Method in class ptolemy.gui.UserDialog
Append the specified text to the response text area with a newline at the end.
appendTitle(String) - Method in class com.jgoodies.forms.builder.DefaultFormBuilder
Adds a title label to the panel and proceeds to the next column.
appendToPath(String) - Method in class ptolemy.gui.JTextAreaExec
Append to the path of the subprocess.
appendToPath(String) - Method in interface ptolemy.util.ExecuteCommands
Append to the path of the subprocess.
appendToPath(String) - Method in class ptolemy.util.StreamExec
Append to the path of the subprocess.
appendToWebAttribute(NamedObj, String, String, String) - Static method in class ptolemy.vergil.basic.export.web.WebAttribute
Factory method for creating WebAttributes that appends to the attribute if it already exists and does not have the specified content.
appendUndoMoML(String) - Method in class ptolemy.moml.UndoContext
Append some MoML to the current buffer.
appendUnrelatedComponentsGapColumn() - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Appends a column that is the default gap for unrelated components.
appendUnrelatedComponentsGapRow() - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Appends a row that is the default gap for unrelated components.
application_xml_file_name - Variable in class org.eol.WmsdActor
 
ApplicationConfigurer - Interface in ptolemy.actor
A marker interface indicating that a class is used to configure a Ptolemy IIapplication.
apply() - Method in class ptolemy.actor.gui.PortConfigurer
Deprecated.
Apply the changes by configuring the ports that have changed.
apply() - Method in class ptolemy.actor.gui.RenameConfigurer
Apply the changes by renaming the object.
apply(Token[]) - Method in class ptolemy.data.expr.ExpressionFunction
Apply the function to the list of arguments, which are tokens.
apply(Token[]) - Method in interface ptolemy.data.Function
Apply the function to the list of arguments, which are tokens.
apply(Token[]) - Method in class ptolemy.data.FunctionToken
Apply this function to the given list of arguments.
apply() - Method in class ptolemy.plot.PlotFormatter
Apply currently specified values to the associated plot.
apply() - Method in class ptolemy.vergil.debugger.BreakpointConfigurer
Set up and save the new breakpoint configuration for this actor.
applyBinaryOperation(ComplexBinaryOperation, Complex, Complex[]) - Static method in class ptolemy.math.ComplexArrayMath
Return a new array that is formed by applying an instance of a ComplexBinaryOperation to each element in the input array, using z as the left argument to op in all cases and the array elements as the right arguments (op.operate(z, array[i])).
applyBinaryOperation(ComplexBinaryOperation, Complex[], Complex) - Static method in class ptolemy.math.ComplexArrayMath
Return a new array that is formed by applying an instance of a ComplexBinaryOperation to each element in the input array, using z as the right operand in all cases and the array elements as the left operands (op.operate(array[i], z)).
applyBinaryOperation(ComplexBinaryOperation, Complex[], Complex[]) - Static method in class ptolemy.math.ComplexArrayMath
Return a new array that is formed by applying an instance of a ComplexBinaryOperation to the two arrays, element by element, using the elements of the first array as the left operands and the elements of the second array as the right operands.
applyBinaryOperation(ComplexBinaryOperation, Complex, Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new matrix that is formed by applying an instance of a ComplexBinaryOperation to each element in the input matrix, using z as the left argument in all cases and the matrix elements as the right arguments (z, op.operate(matrix[i][j])).
applyBinaryOperation(ComplexBinaryOperation, Complex[][], Complex) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new matrix that is formed by applying an instance of a ComplexBinaryOperation to each element in the input matrix, using z as the right argument in all cases and the matrix elements as the left arguments (op.operate(matrix[i][j], z)).
applyBinaryOperation(ComplexBinaryOperation, Complex[][], Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new matrix that is formed by applying an instance of a ComplexBinaryOperation to the two matrices, element by element, using the elements of the first matrix as the left operands and the elements of the second matrix as the right operands.
applyBinaryOperation(DoubleBinaryOperation, double[], double) - Static method in class ptolemy.math.DoubleArrayMath
Return a new array that is formed by applying an instance of a DoubleBinaryOperation to each element in the input array and z, using the array elements as the left operands and z as the right operand in all cases.
applyBinaryOperation(DoubleBinaryOperation, double, double[]) - Static method in class ptolemy.math.DoubleArrayMath
Return a new array that is formed by applying an instance of a DoubleBinaryOperation to each element in the input array, using z as the left operand in all cases and the array elements as the right operands (op.operate(z, array[i])).
applyBinaryOperation(DoubleBinaryOperation, double[], double[]) - Static method in class ptolemy.math.DoubleArrayMath
Return a new array that is formed by applying an instance of a DoubleBinaryOperation to the two arrays, element by element, using the elements of the first array as the left operands and the elements of the second array as the right operands.
applyBinaryOperation(DoubleBinaryOperation, double, double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new array that is formed by applying an instance of a DoubleBinaryOperation to each element in the input matrix, using z as the left operand in all cases and the matrix elements as the right operands (op.operate(z, matrix[i][j])).
applyBinaryOperation(DoubleBinaryOperation, double[][], double) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new array that is formed by applying an instance of a DoubleBinaryOperation to each element in the input matrix, using the matrix elements as the left operands and z as the right operand in all cases (op.operate(matrix[i][j], z)).
applyBinaryOperation(DoubleBinaryOperation, double[][], double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new array that is formed by applying an instance of a DoubleBinaryOperation to the two matrices, element by element, using the elements of the first matrix as the left operands and the elements of the second matrix as the right operands.
applyBinaryOperation(FloatBinaryOperation, float[], float) - Static method in class ptolemy.math.FloatArrayMath
Return a new array that is formed by applying an instance of a FloatBinaryOperation to each element in the input array and z, using the array elements as the left operands and z as the right operand in all cases.
applyBinaryOperation(FloatBinaryOperation, float, float[]) - Static method in class ptolemy.math.FloatArrayMath
Return a new array that is formed by applying an instance of a FloatBinaryOperation to each element in the input array, using z as the left operand in all cases and the array elements as the right operands (op.operate(z, array[i])).
applyBinaryOperation(FloatBinaryOperation, float[], float[]) - Static method in class ptolemy.math.FloatArrayMath
Return a new array that is formed by applying an instance of a FloatBinaryOperation to the two arrays, element by element, using the elements of the first array as the left operands and the elements of the second array as the right operands.
applyBinaryOperation(FloatBinaryOperation, float, float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Return a new array that is formed by applying an instance of a FloatBinaryOperation to each element in the input matrix, using z as the left operand in all cases and the matrix elements as the right operands (op.operate(z, matrix[i][j])).
applyBinaryOperation(FloatBinaryOperation, float[][], float) - Static method in class ptolemy.math.FloatMatrixMath
Return a new array that is formed by applying an instance of a FloatBinaryOperation to each element in the input matrix, using the matrix elements as the left operands and z as the right operand in all cases (op.operate(matrix[i][j], z)).
applyBinaryOperation(FloatBinaryOperation, float[][], float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Return a new array that is formed by applying an instance of a FloatBinaryOperation to the two matrices, element by element, using the elements of the first matrix as the left operands and the elements of the second matrix as the right operands.
applyBinaryOperation(IntegerBinaryOperation, int[], int) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array that is formed by applying an instance of a IntegerBinaryOperation to each element in the input array and z, using the array elements as the left operands and z as the right operand in all cases.
applyBinaryOperation(IntegerBinaryOperation, int, int[]) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array that is formed by applying an instance of a IntegerBinaryOperation to each element in the input array, using z as the left operand in all cases and the array elements as the right operands (op.operate(z, array[i])).
applyBinaryOperation(IntegerBinaryOperation, int[], int[]) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array that is formed by applying an instance of a IntegerBinaryOperation to the two arrays, element by element, using the elements of the first array as the left operands and the elements of the second array as the right operands.
applyBinaryOperation(IntegerBinaryOperation, int, int[][]) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new array that is formed by applying an instance of a IntegerBinaryOperation to each element in the input matrix, using z as the left operand in all cases and the matrix elements as the right operands (op.operate(z, matrix[i][j])).
applyBinaryOperation(IntegerBinaryOperation, int[][], int) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new array that is formed by applying an instance of a IntegerBinaryOperation to each element in the input matrix, using the matrix elements as the left operands and z as the right operand in all cases (op.operate(matrix[i][j], z)).
applyBinaryOperation(IntegerBinaryOperation, int[][], int[][]) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new array that is formed by applying an instance of a IntegerBinaryOperation to the two matrices, element by element, using the elements of the first matrix as the left operands and the elements of the second matrix as the right operands.
applyBinaryOperation(LongBinaryOperation, long[], long) - Static method in class ptolemy.math.LongArrayMath
Return a new array that is formed by applying an instance of a LongBinaryOperation to each element in the input array and z, using the array elements as the left operands and z as the right operand in all cases.
applyBinaryOperation(LongBinaryOperation, long, long[]) - Static method in class ptolemy.math.LongArrayMath
Return a new array that is formed by applying an instance of a LongBinaryOperation to each element in the input array, using z as the left operand in all cases and the array elements as the right operands (op.operate(z, array[i])).
applyBinaryOperation(LongBinaryOperation, long[], long[]) - Static method in class ptolemy.math.LongArrayMath
Return a new array that is formed by applying an instance of a LongBinaryOperation to the two arrays, element by element, using the elements of the first array as the left operands and the elements of the second array as the right operands.
applyBinaryOperation(LongBinaryOperation, long, long[][]) - Static method in class ptolemy.math.LongMatrixMath
Return a new array that is formed by applying an instance of a LongBinaryOperation to each element in the input matrix, using z as the left operand in all cases and the matrix elements as the right operands (op.operate(z, matrix[i][j])).
applyBinaryOperation(LongBinaryOperation, long[][], long) - Static method in class ptolemy.math.LongMatrixMath
Return a new array that is formed by applying an instance of a LongBinaryOperation to each element in the input matrix, using the matrix elements as the left operands and z as the right operand in all cases (op.operate(matrix[i][j], z)).
applyBinaryOperation(LongBinaryOperation, long[][], long[][]) - Static method in class ptolemy.math.LongMatrixMath
Return a new array that is formed by applying an instance of a LongBinaryOperation to the two matrices, element by element, using the elements of the first matrix as the left operands and the elements of the second matrix as the right operands.
ApplyFilterOverArray - Class in ptolemy.actor.lib.hoc
This is an atomic actor that filters an array received at its inputArray input port via applying a model specified by a file or URL.
ApplyFilterOverArray(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.hoc.ApplyFilterOverArray
Construct a ApplyFilterOverArray with a name and a container.
ApplyFunction - Class in ptolemy.actor.lib.hoc
This actor applies a function to its inputs and outputs the results.
ApplyFunction(Workspace) - Constructor for class ptolemy.actor.lib.hoc.ApplyFunction
Construct a ApplyFunction in the specified workspace with no container and an empty string as a name.
ApplyFunction(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.hoc.ApplyFunction
Construct a ApplyFunction with a name and a container.
ApplyFunctionOverSequence - Class in ptolemy.actor.lib.hoc
Deprecated.
Use SequenceToArray followed by ApplyFunction.
ApplyFunctionOverSequence(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.hoc.ApplyFunctionOverSequence
Deprecated.
Construct an actor with the given container and name.
ApplyLayoutRequest - Class in ptolemy.vergil.basic.layout.kieler
A change request specialized for application of automatically computed layout.
ApplyLayoutRequest(Object) - Constructor for class ptolemy.vergil.basic.layout.kieler.ApplyLayoutRequest
Create a request for applying layout.
applyRename(String) - Method in class ptolemy.moml.UndoContext
Used to handle the "rename" element.
applyUnaryOperation(ComplexUnaryOperation, Complex[]) - Static method in class ptolemy.math.ComplexArrayMath
Return a new array that is formed by applying an instance of a ComplexUnaryOperation to each element in the input array (op.operate(array[i])).
applyUnaryOperation(ComplexUnaryOperation, Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new matrix that is formed by applying an instance of a ComplexUnaryOperation to each element in the input matrix (op.operate(matrix[i][j])).
applyUnaryOperation(DoubleUnaryOperation, double[]) - Static method in class ptolemy.math.DoubleArrayMath
Return a new array that is formed by applying an instance of a DoubleUnaryOperation to each element in the input array (op.operate(array[i])).
applyUnaryOperation(DoubleUnaryOperation, double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new array that is formed by applying an instance of a DoubleUnaryOperation to each element in the input matrix (op.operate(matrix[i][j])).
applyUnaryOperation(FloatUnaryOperation, float[]) - Static method in class ptolemy.math.FloatArrayMath
Return a new array that is formed by applying an instance of a FloatUnaryOperation to each element in the input array (op.operate(array[i])).
applyUnaryOperation(FloatUnaryOperation, float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Return a new array that is formed by applying an instance of a FloatUnaryOperation to each element in the input matrix (op.operate(matrix[i][j])).
applyUnaryOperation(IntegerUnaryOperation, int[]) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array that is formed by applying an instance of a IntegerUnaryOperation to each element in the input array (op.operate(array[i])).
applyUnaryOperation(IntegerUnaryOperation, int[][]) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new array that is formed by applying an instance of a IntegerUnaryOperation to each element in the input matrix (op.operate(matrix[i][j])).
applyUnaryOperation(LongUnaryOperation, long[]) - Static method in class ptolemy.math.LongArrayMath
Return a new array that is formed by applying an instance of a LongUnaryOperation to each element in the input array (op.operate(array[i])).
applyUnaryOperation(LongUnaryOperation, long[][]) - Static method in class ptolemy.math.LongMatrixMath
Return a new array that is formed by applying an instance of a LongUnaryOperation to each element in the input matrix (op.operate(matrix[i][j])).
approveAccesssRequest(HttpServletRequest, String) - Method in class org.geon.LidarUtilities
 
apstdHostColonPort - Variable in class org.eol.WmsdActor
 
arbitrarySearch(Reader, boolean) - Method in class org.kepler.objectmanager.repository.EcogridRepository
Search the repository using queryDocument.
Arc - Class in ptolemy.vergil.modal
Deprecated.
Use Link
Arc() - Constructor for class ptolemy.vergil.modal.Arc
Deprecated.
 
ArcAttribute - Class in ptolemy.vergil.kernel.attributes
This is an attribute that is rendered as an ellipse.
ArcAttribute(NamedObj, String) - Constructor for class ptolemy.vergil.kernel.attributes.ArcAttribute
Construct an attribute with the given name contained by the specified container.
ArchiveCounter - Class in org.sdm.spa
Chop up list of files to archive lists with a minimum size.
ArchiveCounter(CompositeEntity, String) - Constructor for class org.sdm.spa.ArchiveCounter
Construct an actor with the given container and name.
archiveDirectory - Variable in class org.kepler.data.datasource.dataturbine.DataTurbineWriter
The directory containing the DataTurbine archive.
archMinSizeMB - Variable in class org.sdm.spa.ArchiveCounter
The minimum size for an archive list given in MBs.
ArcModel() - Constructor for class ptolemy.vergil.modal.FSMGraphModel.ArcModel
 
Area - Class in org.kepler.gis.actor.calc
Calculate the area of a GIS data set.
Area(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.calc.Area
Create a new Area in a container with a specific name.
AreaEventType - Class in ptolemy.vergil.basic.export.web
A parameter used to specify the event type actions associated with an area in an HTML image map.
AreaEventType(NamedObj, String) - Constructor for class ptolemy.vergil.basic.export.web.AreaEventType
Create an instance of this parameter.
areAllModuleDependenciesSatisfied() - Method in class org.kepler.kar.KARFile
 
areSatisfied(Vector) - Static method in class ptolemy.moml.unit.UnitEquation
Return true if the equations are all satisfied.
areUnitArraysEqual(int[], int[]) - Static method in class ptolemy.data.unit.UnitUtilities
Return true if the units of this token are the same as that of the argument token.
ARGUMENT_NAME - Static variable in class org.kepler.ddp.actor.ExecutionChoice
The name of the (optional) attribute contained in parameters.
arguments - Variable in class org.cipres.kepler.JRunCIPRes
The arguments of the program that will be executed are defined in this parameter.
arguments - Variable in class org.geon.FTPClient
Source or destination files to be uploaded/downloaded.
arguments - Variable in class org.sdm.spa.CommandLine
 
arguments - Variable in class org.sdm.spa.CommandLineExec
The arguments to the command.
arguments - Variable in class org.srb.SRBProxyCommand
The arguments to the command.
arrangePanels(DragAndDropPanel, int) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
ArrangePanels is used to re-order the existing panels when you drag and drop them.
array() - Method in class org.json.JSONWriter
Begin appending a new array.
array - Variable in class org.resurgence.actor.ArrayToString
The input port, which contains the array.
array - Variable in class org.resurgence.actor.StringSplitter
The output port, which contains the array.
array - Variable in class ptolemy.actor.lib.ArrayContains
Input array.
array - Variable in class ptolemy.actor.lib.ArrayLevelCrossing
The array to search for a threshold crossing.
array - Variable in class ptolemy.actor.lib.ArrayRemoveElement
Input array.
ARRAY_BOTTOM - Static variable in class ptolemy.data.type.ArrayType
A term to use when declaring the type of some parameter or port to be an array.
ARRAY_BOTTOM - Static variable in class ptolemy.data.type.BaseType
The bottom element of the array type lattice.
ARRAY_UNSIZED_BOTTOM - Static variable in class ptolemy.data.type.ArrayType
A term to use when declaring the type of some parameter or port to be an array, with unknown length.
ArrayAccumulate - Class in ptolemy.actor.lib
An actor that accumulates input arrays into a growing array that includes the contents of all input arrays.
ArrayAccumulate(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.ArrayAccumulate
Construct an actor with the given container and name.
ArrayAppend - Class in ptolemy.actor.lib
An actor that appends ArrayTokens together.
ArrayAppend(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.ArrayAppend
Construct an actor with the given container and name.
ArrayAverage - Class in ptolemy.actor.lib
Compute the average of the elements in an array.
ArrayAverage(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.ArrayAverage
Construct an actor with the given container and name.
arrayConstruct() - Method in class ptolemy.data.expr.PtParser
 
ArrayContains - Class in ptolemy.actor.lib
Determine whether an element is contained in an array.
ArrayContains(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.ArrayContains
Construct an actor with the given container and name.
ArrayElement - Class in ptolemy.actor.lib
Extract an element from an array.
ArrayElement(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.ArrayElement
Construct an actor with the given container and name.
ArrayElementAsMatrix - Class in ptolemy.actor.lib
Extract an element from an array by accessing the array as a matrix.
ArrayElementAsMatrix(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.ArrayElementAsMatrix
Construct an actor with the given container and name.
ArrayElementTypeFunction - Class in ptolemy.actor.util
This class implements a monotonic function that returns the element type of its argument, if the argument is an array type.
ArrayElementTypeFunction(Typeable) - Constructor for class ptolemy.actor.util.ArrayElementTypeFunction
Construct a ArrayElementTypeFunction whose argument is the type of the specified object.
ArrayExtract - Class in ptolemy.actor.lib
Extract a subarray from an array.
ArrayExtract(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.ArrayExtract
Construct an actor with the given container and name.
ArrayFIFOQueue - Class in ptolemy.domains.sdf.kernel
A first-in, first-out (FIFO) queue with variable capacity and optional history.
ArrayFIFOQueue() - Constructor for class ptolemy.domains.sdf.kernel.ArrayFIFOQueue
Construct an empty queue with no container, and an infinite capacity.
ArrayFIFOQueue(int) - Constructor for class ptolemy.domains.sdf.kernel.ArrayFIFOQueue
Construct an empty queue with no container and the given capacity.
ArrayFIFOQueue(Nameable) - Constructor for class ptolemy.domains.sdf.kernel.ArrayFIFOQueue
Construct an empty queue with the specified container.
ArrayFIFOQueue(Nameable, int) - Constructor for class ptolemy.domains.sdf.kernel.ArrayFIFOQueue
Construct an empty queue with the specified container and the given size.
ArrayFIFOQueue(ArrayFIFOQueue) - Constructor for class ptolemy.domains.sdf.kernel.ArrayFIFOQueue
Copy constructor.
ArrayFilter - Class in org.kepler.actor
Filter elements from an array.
ArrayFilter(CompositeEntity, String) - Constructor for class org.kepler.actor.ArrayFilter
Construct an ArrayFilter with the given container and name.
ArrayIndex - Class in ptolemy.domains.pn.demo.QR
This class defines an associative array and methods to store and retrieve data in the array.
ArrayIndex() - Constructor for class ptolemy.domains.pn.demo.QR.ArrayIndex
Construct an ArrayIndex object.
arrayIO - Variable in class org.kepler.data.conversion.binary.EnsembleActor
 
arrayIO_tokenConsumptionRate - Variable in class org.kepler.data.conversion.binary.EnsembleActor
 
ArrayLength - Class in ptolemy.actor.lib
Output the length of an array.
ArrayLength(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.ArrayLength
Construct an actor with the given container and name.
arrayLength - Variable in class ptolemy.domains.sdf.lib.ArrayToSequence
The size of the input array.
arrayLength - Variable in class ptolemy.domains.sdf.lib.SequenceToArray
The size of the output array.
ArrayLevelCrossing - Class in ptolemy.actor.lib
Search an array from the specified starting index and report the index of the first item in the array that is below or above the specified threshold.
ArrayLevelCrossing(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.ArrayLevelCrossing
Construct an actor with the given container and name.
ArrayMapCachedMethod(String, Type[], int, CachedMethod, boolean[]) - Constructor for class ptolemy.data.expr.CachedMethod.ArrayMapCachedMethod
Constructs a CachedMethod$ArrayMapCachedMethod object.
ArrayMaximum - Class in ptolemy.actor.lib
Extract the maximum element from an array.
ArrayMaximum(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.ArrayMaximum
Construct an actor with the given container and name.
ArrayMinimum - Class in ptolemy.actor.lib
Extract the minimum element from an array.
ArrayMinimum(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.ArrayMinimum
Construct an actor with the given container and name.
arrayOf(Typeable, Variable) - Static method in class ptolemy.actor.util.ActorTypeUtil
Return a type constraint that can be used to constrain another typeable object to have a type related to an array whose element type is the type of the specified typeable.
arrayOf(Typeable) - Static method in class ptolemy.data.type.ArrayType
Return a type constraint that can be used to constrain another typeable object to have a type related to an array whose element type is the type of the specified typeable.
arrayOf(Typeable, int) - Static method in class ptolemy.data.type.ArrayType
Return a type constraint that can be used to constrain another typeable object to have a type related to an array whose element type is the type of the specified typeable.
ArrayOfRecordsConfigureFactory - Class in ptolemy.vergil.toolbox
If this class is contained by an actor, then double clicking on that actor will display a table that shows the value of an array of tokens contained by a parameter contained by the same container as this factory.
ArrayOfRecordsConfigureFactory(NamedObj, String) - Constructor for class ptolemy.vergil.toolbox.ArrayOfRecordsConfigureFactory
Construct a factory with the specified container and name.
ArrayOfRecordsPane - Class in ptolemy.actor.gui
A graphical component that displays the values in an array of records.
ArrayOfRecordsPane() - Constructor for class ptolemy.actor.gui.ArrayOfRecordsPane
Construct an empty table pane.
ArrayOfRecordsPane.ArrayAsTable - Class in ptolemy.actor.gui
This class provides an implementation of the TableModel interface for viewing an array of records.
ArrayOfRecordsToRecordOfArrays - Class in org.kepler.data.conversion
Convert an array of records to a record of arrays.
ArrayOfRecordsToRecordOfArrays(CompositeEntity, String) - Constructor for class org.kepler.data.conversion.ArrayOfRecordsToRecordOfArrays
Construct an ArrayOfRecordsToRecordOfArrays with the given container and name.
ArrayOfRecordsWriter - Class in org.kepler.actor.io
Write an array of records to a table.
ArrayOfRecordsWriter(CompositeEntity, String) - Constructor for class org.kepler.actor.io.ArrayOfRecordsWriter
Construct an ArrayOfRecordsWriter.
ArrayOfTypesFunction - Class in ptolemy.actor.util
This class implements a monotonic function that returns an array type with the element type equal to its argument.
ArrayOfTypesFunction(Typeable) - Constructor for class ptolemy.actor.util.ArrayOfTypesFunction
Construct a ArrayElementTypeFunction whose argument is the type of the specified object.
ArrayOfTypesFunction(Typeable, int) - Constructor for class ptolemy.actor.util.ArrayOfTypesFunction
Construct a ArrayElementTypeFunction whose argument is the type of the specified object.
ArrayPeakSearch - Class in ptolemy.actor.lib
This actor outputs the indices and values of peaks in an input array.
ArrayPeakSearch(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.ArrayPeakSearch
Construct an actor with the given container and name.
ArrayPermute - Class in org.sdm.spa
Create all permutations of input arrays.
ArrayPermute(CompositeEntity, String) - Constructor for class org.sdm.spa.ArrayPermute
Construct an ArrayPermute with the given container and name.
ArrayPlotter - Class in ptolemy.actor.lib.gui
A plotter that plots a sequence of arrays of doubles.
ArrayPlotter(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.gui.ArrayPlotter
Construct an actor with the given container and name.
ArrayPlotterXY - Class in ptolemy.actor.lib.gui
A plotter that plots a sequence of pairs of arrays of doubles as an XY plot.
ArrayPlotterXY(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.gui.ArrayPlotterXY
Construct an actor with the given container and name.
ArrayRemoveElement - Class in ptolemy.actor.lib
Remove occurrences of a specified element from an array.
ArrayRemoveElement(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.ArrayRemoveElement
Construct an actor with the given container and name.
ArraySort - Class in ptolemy.actor.lib
Sort the elements of an input array.
ArraySort(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.ArraySort
Construct an actor with the given container and name.
ArraySum - Class in ptolemy.actor.lib
Compute the sum of the elements in an array.
ArraySum(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.ArraySum
Construct an actor with the given container and name.
arraysWrapped - Variable in class org.sdm.spa.XMLDisassembler
If true, then each element of an array is wrapped in an additional element.
ArrayToElements - Class in ptolemy.actor.lib
An actor that disassembles an ArrayToken to a multiport output.
ArrayToElements(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.ArrayToElements
Construct an actor with the given container and name.
ArrayToken - Class in ptolemy.data
A token that contains an array of tokens.
ArrayToken(Token[]) - Constructor for class ptolemy.data.ArrayToken
Construct an ArrayToken with the specified token array.
ArrayToken(Token[], int) - Constructor for class ptolemy.data.ArrayToken
Construct an ArrayToken with the first length elements of the specified token array.
ArrayToken(String) - Constructor for class ptolemy.data.ArrayToken
Construct an ArrayToken from the specified string.
ArrayToken(Type) - Constructor for class ptolemy.data.ArrayToken
Construct an empty ArrayToken with the given element type.
ArrayToken(Type, Token[]) - Constructor for class ptolemy.data.ArrayToken
Construct an ArrayToken with the specified element type and token array.
ARRAYTOKEN_CONVERSION - Static variable in class ptolemy.data.expr.CachedMethod
Conversion from an ArrayToken to a Token array (Token[]).
arrayTokenToByteArray(ArrayToken) - Static method in class org.kepler.hadoop.util.StubUtilities
Convert ArrayToken to an array of byte.
arrayTokenToByteArray(ArrayToken) - Static method in class org.kepler.stratosphere.stub.StubUtilities
Convert ArrayToken to an array of byte.
arrayTokenToPactData(ArrayToken) - Static method in class org.kepler.stratosphere.stub.StubUtilities
Convert ArrayToken to an array of Value.
arrayTokenToUnsignedByteArray(ArrayToken) - Static method in class ptolemy.data.ArrayToken
Convert an ArrayToken to an array of unsigned bytes.
ArrayToMatrix - Class in ptolemy.actor.lib
Convert an array to a row or column vector encoded as a matrix token.
ArrayToMatrix(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.ArrayToMatrix
Construct an actor with the given container and name.
arrayToMatrix(Token[], int, int) - Static method in class ptolemy.data.MatrixToken
Create a new instance of a MatrixToken subclass with the given number of rows and columns.
arrayToMatrix(Type, Token[], int, int) - Static method in class ptolemy.data.MatrixToken
Create a new instance of a MatrixToken subclass with the given element type and number of rows and columns.
arrayToMatrixReturnType(Type, Type, Type) - Static method in class ptolemy.data.MatrixToken
Return the (exact) return type of the arrayToMatrix function above.
ArrayToSequence - Class in ptolemy.domains.sdf.lib
This actor reads an array at the input and writes the array elements as a sequence to the output.
ArrayToSequence(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.ArrayToSequence
Construct an actor with the given container and name.
ArrayToString - Class in org.resurgence.actor
This actor reads an array and writes a string with all the elements.
ArrayToString(CompositeEntity, String) - Constructor for class org.resurgence.actor.ArrayToString
Construct an ArrayToString with the given container and name.
arrayType(Token) - Static method in class ptolemy.data.expr.UtilityFunctions
Return a new UnsizedArrayToken whose element type is the same as the given type.
arrayType(Token, IntToken) - Static method in class ptolemy.data.expr.UtilityFunctions
Return a new UnsizedArrayToken whose element type is the same as the given type, and whose length is the given length.
ArrayType - Class in ptolemy.data.type
A class representing the type of an ArrayToken.
ArrayType(Type) - Constructor for class ptolemy.data.type.ArrayType
Construct a new ArrayType with the specified type for the array elements.
ArrayType(Type, int) - Constructor for class ptolemy.data.type.ArrayType
Construct a new ArrayType with the specified type for the array elements.
arrayTypeReturnType(Type) - Static method in class ptolemy.data.expr.UtilityFunctions
Return a new ArrayType whose element type is the same as the given type.
arrayTypeReturnType(Type, Type) - Static method in class ptolemy.data.expr.UtilityFunctions
Return the (not quite exact) return type of the arrayType function above.
ArrayUpdate - Class in ptolemy.actor.lib
Replace an element in an array with a new value.
ArrayUpdate(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.ArrayUpdate
Construct an actor with the given container and name.
arrayValue() - Method in class ptolemy.data.ArrayToken
Return an array of tokens populated with the contents of this array token.
ArrowAttribute - Class in ptolemy.vergil.kernel.attributes
An attribute shown as an arrow.
ArrowAttribute(NamedObj, String) - Constructor for class ptolemy.vergil.kernel.attributes.ArrowAttribute
Construct an attribute with the given name contained by the specified container.
ArrowKeyProbe - Class in ptolemy.actor.lib.gui
Detect when the user presses or releases an arrow key and produce an integer on the corresponding output.
ArrowKeyProbe(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.gui.ArrowKeyProbe
Create an actor that detects user presses on the arrow key.
ArrowKeySensor - Class in ptolemy.actor.lib.gui
Detect when the user presses or releases an arrow key and produce an integer on the corresponding output.
ArrowKeySensor(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.gui.ArrowKeySensor
Construct an actor with the given container and name.
arrowLength - Variable in class ptolemy.vergil.kernel.attributes.ArrowAttribute
Length of the arrow head.
arrowWidth - Variable in class ptolemy.vergil.kernel.attributes.ArrowAttribute
Width of the arrow head.
arrTFBSs - Variable in class org.sdm.spa.actors.piw.viz.Sequence
 
asAWTImage() - Method in class ptolemy.data.AWTImageToken
Because all tokens that contain images must extend ImageToken, we must include the following method.
asAWTImage() - Method in class ptolemy.data.ImageToken
Return the value of this token as a java.awt.Image.
asBooleanMatrix(REXP) - Static method in class org.ecoinformatics.seek.R.RExpression2
 
asBooleanMatrix(REXP) - Static method in class ptolemy.actor.lib.r.RExpression2
Return as a matrix of booleans.
ascending - Variable in class ptolemy.actor.lib.ArraySort
The sort order attribute.
AscGridValue - Class in org.ecoinformatics.seek.gis.java_gis
This actor finds the value of a given position in an asc grid.
AscGridValue(CompositeEntity, String) - Constructor for class org.ecoinformatics.seek.gis.java_gis.AscGridValue
constructor
asColor() - Method in class ptolemy.actor.gui.ColorAttribute
Return the color as a Color object.
asFile() - Method in class ptolemy.actor.parameters.FilePortParameter
Return the file as a File object.
asFile() - Method in class ptolemy.data.expr.FileParameter
Return the file as a File object.
asFile() - Method in class ptolemy.kernel.attributes.FileAttribute
Deprecated.
Return the file as a File object.
asFile() - Method in interface ptolemy.kernel.attributes.FileOrURLAccessor
Return the file as a File object.
asin() - Method in class ptolemy.math.Complex
Return the principal arc sine of this complex number.
asin(Complex) - Static method in class ptolemy.math.Complex
Return the principal arc sine of the given complex number.
asinh() - Method in class ptolemy.math.Complex
Return the principal hyperbolic arc sine of this complex number.
asinh(Complex) - Static method in class ptolemy.math.Complex
Return the principal hyperbolic arc sine of the given complex number.
asinh(double) - Static method in class ptolemy.math.ExtendedMath
Return the inverse hyperbolic sine of the argument.
asInputStream() - Method in class org.kepler.kar.karxml.KarXml.KarEntry
 
asIntMatrix(double[][]) - Static method in class org.ecoinformatics.seek.R.RExpression2
 
asIntMatrix(double[][]) - Static method in class ptolemy.actor.lib.r.RExpression2
Return the array as an int matrix.
askAndUpgrade(DatabaseType, Schema) - Static method in class org.kepler.provenance.sql.Upgrade
Ask the user if she wants to upgrade the provenance database, and if the response is yes, upgrade the database.
asLegalDbFieldName(String) - Static method in class org.kepler.objectmanager.data.db.Attribute
Given an attribute name, return a legal database field name.
asLocalFile() - Method in class org.kepler.kar.karxml.KarXml.KarEntry
 
aspect - Variable in class org.kepler.gis.actor.landscape.CreateLandscape
Aspect raster (required).
ASPECT_RATIO - Static variable in class ptolemy.vergil.basic.layout.kieler.Parameters
Layout option for the aspect ratio of connected components.
Assert - Class in ptolemy.actor.lib
Check that an assertion predicate is satisfied, and throw an exception if not.
Assert(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Assert
Construct an instance of Assert.
Assert.AssertPort - Class in ptolemy.actor.lib
Class for ports created by the user for this actor.
AssertPort(Assert, String) - Constructor for class ptolemy.actor.lib.Assert.AssertPort
Construct a port for this actor.
assignedLSIDs() - Method in class org.ecoinformatics.seek.sms.KeplerLocalLSIDService
Description of the Method
assignIdTo(NamedObj) - Static method in class org.kepler.moml.NamedObjId
Generate a new KeplerLSID and assign it to this NamedObj.
assignIdTo(NamedObj, KeplerLSID) - Static method in class org.kepler.moml.NamedObjId
Assign the given KeplerLSID to this NamedObj.
assignIdTo(NamedObj, KeplerLSID, boolean) - Static method in class org.kepler.moml.NamedObjId
Assign the given KeplerLSID to this NamedObj.
assignLSID(String, NamedObj) - Method in class org.ecoinformatics.seek.sms.KeplerLocalLSIDService
Adds a named object to an lsid that hasn't been previously assigned.
assignment() - Method in class ptolemy.data.expr.PtParser
 
assignmentIdentifier() - Method in class ptolemy.data.expr.PtParser
 
assignSuperConcept(String, String) - Method in class org.ecoinformatics.seek.sms.OntologyCatalog
Assigns a concept as a subconcept to a superconcept
assignSuperConcept(String, String) - Method in class org.kepler.sms.OntologyCatalog
Assigns a concept as a subconcept to a superconcept
AssociativeType - Class in ptolemy.data.type
This class represents structures that store (key, value) pairs.
AssociativeType() - Constructor for class ptolemy.data.type.AssociativeType
 
assureKarEntry(KARCacheContent) - Method in class org.kepler.objectmanager.library.LibIndex
Assures that the LibIndex row under the folder hierarchy exists for the given KARCacheContent.
assureOntologyComponent(KARCacheContent) - Method in class org.kepler.objectmanager.library.LibIndex
Assures that the LibIndex rows for the KARCacheContent object exist under the Ontology tree.
assureXML(File) - Method in class org.kepler.objectmanager.library.LibIndex
 
asTag() - Method in class org.kepler.tagging.gui.CBItems.AddConceptCBItem
 
asTag() - Method in class org.kepler.tagging.gui.CBItems.ConceptCBItem
 
asTag() - Method in class org.kepler.tagging.gui.CBItems.ExistingConceptCBItem
 
asTag() - Method in class org.kepler.tagging.gui.CBItems.TruncatedExistingConceptCBItem
 
ASTPtArrayConstructNode - Class in ptolemy.data.expr
The parse tree created from the expression string consists of a hierarchy of node objects.
ASTPtArrayConstructNode(int) - Constructor for class ptolemy.data.expr.ASTPtArrayConstructNode
 
ASTPtArrayConstructNode(PtParser, int) - Constructor for class ptolemy.data.expr.ASTPtArrayConstructNode
 
ASTPtAssignmentNode - Class in ptolemy.data.expr
ASTPtAssignmentNode(int) - Constructor for class ptolemy.data.expr.ASTPtAssignmentNode
 
ASTPtAssignmentNode(PtParser, int) - Constructor for class ptolemy.data.expr.ASTPtAssignmentNode
 
ASTPtBitwiseNode - Class in ptolemy.data.expr
The parse tree created from the expression string consists of a hierarchy of node objects.
ASTPtBitwiseNode(int) - Constructor for class ptolemy.data.expr.ASTPtBitwiseNode
 
ASTPtBitwiseNode(PtParser, int) - Constructor for class ptolemy.data.expr.ASTPtBitwiseNode
 
ASTPtFunctionalIfNode - Class in ptolemy.data.expr
The parse tree created from the expression string consists of a hierarchy of node objects.
ASTPtFunctionalIfNode(int) - Constructor for class ptolemy.data.expr.ASTPtFunctionalIfNode
 
ASTPtFunctionalIfNode(PtParser, int) - Constructor for class ptolemy.data.expr.ASTPtFunctionalIfNode
 
ASTPtFunctionApplicationNode - Class in ptolemy.data.expr
This class represents an expression that is the application of a function in the parse tree.
ASTPtFunctionApplicationNode(int) - Constructor for class ptolemy.data.expr.ASTPtFunctionApplicationNode
 
ASTPtFunctionApplicationNode(PtParser, int) - Constructor for class ptolemy.data.expr.ASTPtFunctionApplicationNode
 
ASTPtFunctionDefinitionNode - Class in ptolemy.data.expr
The parse tree created from function definitions of the form: function (x) x + 5 which defines a function of one argument.
ASTPtFunctionDefinitionNode(int) - Constructor for class ptolemy.data.expr.ASTPtFunctionDefinitionNode
Create a function definition node with an id.
ASTPtFunctionDefinitionNode(PtParser, int) - Constructor for class ptolemy.data.expr.ASTPtFunctionDefinitionNode
Create a function definition node with a parser and an id.
ASTPtLeafNode - Class in ptolemy.data.expr
The parse tree created from the expression string consists of a hierarchy of node objects.
ASTPtLeafNode(int) - Constructor for class ptolemy.data.expr.ASTPtLeafNode
 
ASTPtLeafNode(PtParser, int) - Constructor for class ptolemy.data.expr.ASTPtLeafNode
 
ASTPtLogicalNode - Class in ptolemy.data.expr
The parse tree created from the expression string consists of a hierarchy of node objects.
ASTPtLogicalNode(int) - Constructor for class ptolemy.data.expr.ASTPtLogicalNode
 
ASTPtLogicalNode(PtParser, int) - Constructor for class ptolemy.data.expr.ASTPtLogicalNode
 
ASTPtMatrixConstructNode - Class in ptolemy.data.expr
The parse tree created from the expression string consists of a hierarchy of node objects.
ASTPtMatrixConstructNode(int) - Constructor for class ptolemy.data.expr.ASTPtMatrixConstructNode
 
ASTPtMatrixConstructNode(PtParser, int) - Constructor for class ptolemy.data.expr.ASTPtMatrixConstructNode
 
ASTPtMethodCallNode - Class in ptolemy.data.expr
The parse tree created from the expression string consists of a hierarchy of node objects.
ASTPtMethodCallNode(int) - Constructor for class ptolemy.data.expr.ASTPtMethodCallNode
 
ASTPtMethodCallNode(PtParser, int) - Constructor for class ptolemy.data.expr.ASTPtMethodCallNode
 
ASTPtOrderedRecordConstructNode - Class in ptolemy.data.expr
The parse tree created from the expression string consists of a hierarchy of node objects.
ASTPtOrderedRecordConstructNode(int) - Constructor for class ptolemy.data.expr.ASTPtOrderedRecordConstructNode
 
ASTPtOrderedRecordConstructNode(PtParser, int) - Constructor for class ptolemy.data.expr.ASTPtOrderedRecordConstructNode
 
ASTPtPowerNode - Class in ptolemy.data.expr
The parse tree created from the expression string consists of a hierarchy of node objects.
ASTPtPowerNode(int) - Constructor for class ptolemy.data.expr.ASTPtPowerNode
 
ASTPtPowerNode(PtParser, int) - Constructor for class ptolemy.data.expr.ASTPtPowerNode
 
ASTPtProductNode - Class in ptolemy.data.expr
The parse tree created from the expression string consists of a hierarchy of node objects.
ASTPtProductNode(int) - Constructor for class ptolemy.data.expr.ASTPtProductNode
 
ASTPtProductNode(PtParser, int) - Constructor for class ptolemy.data.expr.ASTPtProductNode
 
ASTPtRecordConstructNode - Class in ptolemy.data.expr
The parse tree created from the expression string consists of a hierarchy of node objects.
ASTPtRecordConstructNode(int) - Constructor for class ptolemy.data.expr.ASTPtRecordConstructNode
 
ASTPtRecordConstructNode(PtParser, int) - Constructor for class ptolemy.data.expr.ASTPtRecordConstructNode
 
ASTPtRelationalNode - Class in ptolemy.data.expr
The parse tree created from the expression string consists of a hierarchy of node objects.
ASTPtRelationalNode(int) - Constructor for class ptolemy.data.expr.ASTPtRelationalNode
 
ASTPtRelationalNode(PtParser, int) - Constructor for class ptolemy.data.expr.ASTPtRelationalNode
 
ASTPtRootNode - Class in ptolemy.data.expr
The parse tree created from the expression string consists of a hierarchy of node objects, each of which is an instance of a class derived from this class.
ASTPtRootNode(int) - Constructor for class ptolemy.data.expr.ASTPtRootNode
 
ASTPtRootNode(PtParser, int) - Constructor for class ptolemy.data.expr.ASTPtRootNode
 
ASTPtShiftNode - Class in ptolemy.data.expr
The parse tree created from the expression string consists of a hierarchy of node objects.
ASTPtShiftNode(int) - Constructor for class ptolemy.data.expr.ASTPtShiftNode
 
ASTPtShiftNode(PtParser, int) - Constructor for class ptolemy.data.expr.ASTPtShiftNode
 
ASTPtSumNode - Class in ptolemy.data.expr
The parse tree created from the expression string consists of a hierarchy of node objects.
ASTPtSumNode(int) - Constructor for class ptolemy.data.expr.ASTPtSumNode
 
ASTPtSumNode(PtParser, int) - Constructor for class ptolemy.data.expr.ASTPtSumNode
 
ASTPtUnaryNode - Class in ptolemy.data.expr
The parse tree created from the expression string consists of a hierarchy of node objects.
ASTPtUnaryNode(int) - Constructor for class ptolemy.data.expr.ASTPtUnaryNode
 
ASTPtUnaryNode(PtParser, int) - Constructor for class ptolemy.data.expr.ASTPtUnaryNode
 
ASTPtUnionConstructNode - Class in ptolemy.data.expr
The parse tree created from the expression string consists of a hierarchy of node objects.
ASTPtUnionConstructNode(int) - Constructor for class ptolemy.data.expr.ASTPtUnionConstructNode
 
ASTPtUnionConstructNode(PtParser, int) - Constructor for class ptolemy.data.expr.ASTPtUnionConstructNode
 
asURL() - Method in class ptolemy.actor.parameters.FilePortParameter
Return the file as a URL.
asURL() - Method in class ptolemy.data.expr.FileParameter
Return the file as a URL.
asURL(String) - Static method in class ptolemy.data.expr.UtilityFunctions
Convert the argument from a fileName to a URL that begins with "file:".
asURL() - Method in class ptolemy.kernel.attributes.FileAttribute
Deprecated.
Return the file as a URL.
asURL() - Method in interface ptolemy.kernel.attributes.FileOrURLAccessor
Return the file as a URL.
ASYNCHRONOUS_IO - Static variable in class ptolemy.chic.ChicInvoker
Indicate use of the Asynchronous I/O compiler.
at(int) - Method in class ptolemy.actor.util.TotallyOrderedSet
Return the element with the given index.
atan() - Method in class ptolemy.math.Complex
Return the principal arc tangent of this complex number.
atan(Complex) - Static method in class ptolemy.math.Complex
Return the principal arc tangent of the given complex number.
atanh() - Method in class ptolemy.math.Complex
Return the principal hyperbolic arc tangent of this complex number.
atanh(Complex) - Static method in class ptolemy.math.Complex
Return the principal hyperbolic arc tangent of the given complex number.
atKey(int) - Method in class ptolemy.domains.pn.demo.QR.ArrayIndex
Create a key for an 1 dimensional index reference.
atKey(int, int) - Method in class ptolemy.domains.pn.demo.QR.ArrayIndex
Create a key for an 2 dimensional index reference.
atKey(int, int, int) - Method in class ptolemy.domains.pn.demo.QR.ArrayIndex
Create a key for an 3 dimensional index reference.
atKey(int, int, int, int) - Method in class ptolemy.domains.pn.demo.QR.ArrayIndex
Create a key for an 4 dimensional index reference.
atKey(int, int, int, int, int) - Method in class ptolemy.domains.pn.demo.QR.ArrayIndex
Create a key for an 5 dimensional index reference.
atKey(int, int, int, int, int, int) - Method in class ptolemy.domains.pn.demo.QR.ArrayIndex
Create a key for an 6 dimensional index reference.
ATMCombineFiles - Class in org.kepler.gis.actor.windninja
Combine WindNinja ATM files into a single ATM file.
ATMCombineFiles(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.windninja.ATMCombineFiles
 
AtomicActor<T extends IOPort> - Class in ptolemy.actor
An AtomicActor is an executable entity that cannot itself contain other actors.
AtomicActor() - Constructor for class ptolemy.actor.AtomicActor
Construct an actor in the default workspace with an empty string as its name.
AtomicActor(Workspace) - Constructor for class ptolemy.actor.AtomicActor
Construct an actor in the specified workspace with an empty string as a name.
AtomicActor(CompositeEntity, String) - Constructor for class ptolemy.actor.AtomicActor
Create a new actor in the specified container with the specified name.
AtomicComponent - Class in ptolemy.component
A component with functionality given in Java.
AtomicComponent(CompositeEntity, String) - Constructor for class ptolemy.component.AtomicComponent
Construct an entity with the given name contained by the specified entity.
AtomicPathActor - Class in org.kepler.ddp.actor.pattern
An atomic DDP pattern actor with a path parameter.
AtomicPathActor(CompositeEntity, String) - Constructor for class org.kepler.ddp.actor.pattern.AtomicPathActor
Create a new AtomicPathActor in the speficied container with the specified name.
AtomicPatternActor - Class in org.kepler.ddp.actor.pattern
An atomic actor for DDP patterns.
AtomicPatternActor(CompositeEntity, String) - Constructor for class org.kepler.ddp.actor.pattern.AtomicPatternActor
Construct a new AtomicPatternActor in a container with a given name.
ATT_CLASSNAME - Static variable in class org.kepler.objectmanager.library.LibIndex
 
ATT_FOLDER - Static variable in class org.kepler.objectmanager.library.LibIndex
 
ATT_KARENTRYPATH - Static variable in class org.kepler.objectmanager.library.LibIndex
 
ATT_KARFILE - Static variable in class org.kepler.objectmanager.library.LibIndex
 
ATT_REPOPATH - Static variable in class org.kepler.objectmanager.library.LibIndex
Attribute names that are used to keep information about Library nodes.
ATT_XMLFILE - Static variable in class org.kepler.objectmanager.library.LibIndex
 
attachParameter(Settable, String) - Method in class ptolemy.actor.gui.PtolemyQuery
Attach an attribute to an entry with name entryName, of a Query.
attribute(String, String, boolean) - Method in class com.microstar.xml.demo.EventDemo
Handle an attribute value assignment by printing an event.
attribute(String, String, boolean) - Method in class com.microstar.xml.demo.XmlApp
Handle an attribute value specification.
attribute(String, String, boolean) - Method in class com.microstar.xml.demo.XmlApplet
Handle an attribute value specification.
attribute(String, String, boolean) - Method in class com.microstar.xml.driver.SAXDriver
Implement com.microstar.xml.XmlHandler#attribute.
attribute(String, String, boolean) - Method in class com.microstar.xml.HandlerBase
Handle an attribute assignment.
attribute(String, String, boolean) - Method in interface com.microstar.xml.XmlHandler
Attribute.
Attribute - Class in org.kepler.objectmanager.data.db
This object represents an Attribute.
Attribute(String, String, String) - Constructor for class org.kepler.objectmanager.data.db.Attribute
Construct a Attribute.
Attribute(String, String, String, String) - Constructor for class org.kepler.objectmanager.data.db.Attribute
Construct a Attribute.
Attribute(String, String, String, String, String, Domain) - Constructor for class org.kepler.objectmanager.data.db.Attribute
Construct a Attribute.
Attribute(String, String, String, String, String, String, String, String, Domain) - Constructor for class org.kepler.objectmanager.data.db.Attribute
Constructor for extra local params
Attribute - Class in ptolemy.kernel.util
Attribute is a base class for attributes to be attached to instances of NamedObj.
Attribute() - Constructor for class ptolemy.kernel.util.Attribute
Construct an attribute in the default workspace with an empty string as its name.
Attribute(Workspace) - Constructor for class ptolemy.kernel.util.Attribute
Construct an attribute in the specified workspace with an empty string as a name.
Attribute(NamedObj, String) - Constructor for class ptolemy.kernel.util.Attribute
Construct an attribute with the given name contained by the specified entity.
Attribute(NamedObj, String, boolean) - Constructor for class ptolemy.kernel.util.Attribute
Construct an attribute with the given name contained by the specified entity.
attribute(String, String, boolean) - Method in class ptolemy.moml.MoMLParser
Handle an attribute assignment that is part of an XML element.
attribute(String, String, boolean) - Method in class ptolemy.plot.plotml.PlotBoxMLParser
Handle an attribute assignment that is part of an XML element.
attribute(String, String, boolean) - Method in class ptolemy.vergil.actor.DocManager
Handle an attribute assignment that is part of an XML element.
ATTRIBUTE_CDATA - Static variable in class com.microstar.xml.XmlParser
Constant: the attribute value is a string value.
ATTRIBUTE_DEFAULT_FIXED - Static variable in class com.microstar.xml.XmlParser
Constant: the attribute was declared #FIXED.
ATTRIBUTE_DEFAULT_IMPLIED - Static variable in class com.microstar.xml.XmlParser
Constant: the attribute was declared #IMPLIED.
ATTRIBUTE_DEFAULT_REQUIRED - Static variable in class com.microstar.xml.XmlParser
Constant: the attribute was declared #REQUIRED.
ATTRIBUTE_DEFAULT_SPECIFIED - Static variable in class com.microstar.xml.XmlParser
Constant: the attribute has a literal default value specified.
ATTRIBUTE_DEFAULT_UNDECLARED - Static variable in class com.microstar.xml.XmlParser
Constant: the attribute is not declared.
ATTRIBUTE_ENTITIES - Static variable in class com.microstar.xml.XmlParser
Constant: the attribute value is a list of entity names.
ATTRIBUTE_ENTITY - Static variable in class com.microstar.xml.XmlParser
Constant: the attribute value is the name of an entity.
ATTRIBUTE_ENUMERATED - Static variable in class com.microstar.xml.XmlParser
Constant: the attribute value is a token from an enumeration.
ATTRIBUTE_ID - Static variable in class com.microstar.xml.XmlParser
Constant: the attribute value is a unique identifier.
ATTRIBUTE_IDREF - Static variable in class com.microstar.xml.XmlParser
Constant: the attribute value is a reference to a unique identifier.
ATTRIBUTE_IDREFS - Static variable in class com.microstar.xml.XmlParser
Constant: the attribute value is a list of ID references.
ATTRIBUTE_NMTOKEN - Static variable in class com.microstar.xml.XmlParser
Constant: the attribute value is a name token.
ATTRIBUTE_NMTOKENS - Static variable in class com.microstar.xml.XmlParser
Constant: the attribute value is a list of name tokens.
ATTRIBUTE_NOTATION - Static variable in class com.microstar.xml.XmlParser
Constant: the attribute is the name of a notation.
ATTRIBUTE_UNDECLARED - Static variable in class com.microstar.xml.XmlParser
Constant: the attribute has not been declared for this element type.
AttributeBoundsManipulator - Class in ptolemy.vergil.toolbox
This is a bounds manipulator supporting resizable icons.
AttributeBoundsManipulator(NamedObj) - Constructor for class ptolemy.vergil.toolbox.AttributeBoundsManipulator
Construct a new bounds manipulator.
attributeChanged(Attribute) - Method in class org.camera.service.CAMERARESTService
 
attributeChanged(Attribute) - Method in class org.camera.service.CAMERAURLProcessor
 
attributeChanged(Attribute) - Method in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreDataSource
Callback for changes in attribute values.
attributeChanged(Attribute) - Method in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource
Callback for changes in attribute values.
attributeChanged(Attribute) - Method in class org.ecoinformatics.seek.ecogrid.EcogridWriter
Determine the attribute changed value
attributeChanged(Attribute) - Method in class org.ecoinformatics.seek.util.SequenceToTrigger
Ensure that the sequenceLength parameter is not negative.
attributeChanged(Attribute) - Method in class org.geon.BinaryFileWriter
If the specified attribute is fileName and there is an open file being written, then close that file.
attributeChanged(Attribute) - Method in class org.geon.DatabaseQuery
Determine the output format
attributeChanged(Attribute) - Method in class org.geon.FileToArray
If the specified attribute is fileOrURL and there is an open file being read, then close that file and open the new one; if the attribute is numberOfLinesToSkip and its value is negative, then throw an exception.
attributeChanged(Attribute) - Method in class org.geon.FileToString
If the specified attribute is fileOrURL and there is an open file being read, then close that file and open the new one; if the attribute is numberOfLinesToSkip and its value is negative, then throw an exception.
attributeChanged(Attribute) - Method in class org.geon.FTPClient
Determine the output format
attributeChanged(Attribute) - Method in class org.geon.OpenDBConnection
Callback for changes in attribute values.
attributeChanged(Attribute) - Method in class org.kepler.actor.database.DatabaseTableCreator
Reconfigure actor when certain attributes change.
attributeChanged(Attribute) - Method in class org.kepler.actor.job.GenericJobLauncher
React to a change in an attribute.
attributeChanged(Attribute) - Method in class org.kepler.actor.job.GenericJobReconnect
React to a change in an attribute.
attributeChanged(Attribute) - Method in class org.kepler.actor.job.JobStatus
React to a change in an attribute.
attributeChanged(Attribute) - Method in class org.kepler.actor.RecordOperation
 
attributeChanged(Attribute) - Method in class org.kepler.actor.ssh.ExecuteCmd
If the specified attribute is showTriggerPort, then get the value of it and re-render the trigger port.
attributeChanged(Attribute) - Method in class org.kepler.data.conversion.binary.EnsembleActor
 
attributeChanged(Attribute) - Method in class org.kepler.data.datasource.dataturbine.DataTurbine
Reconfigure actor when certain attributes change.
attributeChanged(Attribute) - Method in class org.kepler.data.datasource.dataturbine.DataTurbineWriter
React to a change in an attribute.
attributeChanged(Attribute) - Method in class org.kepler.data.netcdf.NetCDFReader
React to a change in an attribute.
attributeChanged(Attribute) - Method in class org.kepler.data.netcdf.NetCDFWriter
React to a change in an attribute.
attributeChanged(Attribute) - Method in class org.kepler.dataproxy.datasource.geon.GEONDatabaseResource
Callback for changes in attribute values.
attributeChanged(Attribute) - Method in class org.kepler.dataproxy.datasource.geon.GEONShpResource
Callback for changes in attribute values.
attributeChanged(Attribute) - Method in class org.kepler.dataproxy.datasource.opendap.OpendapDataSource
 
attributeChanged(Attribute) - Method in class org.kepler.dataproxy.datasource.opendap.OpendapDataSourceODC
 
attributeChanged(Attribute) - Method in class org.kepler.date.CreateDate
React to an attribute change.
attributeChanged(Attribute) - Method in class org.kepler.ddp.actor.ExecutionChoice
React to a change in an attribute.
attributeChanged(Attribute) - Method in class org.kepler.ddp.actor.pattern.AtomicPatternActor
See if the formatType parameter changed.
attributeChanged(Attribute) - Method in class org.kepler.ddp.actor.pattern.DDPDataSource
React to a parameter change.
attributeChanged(Attribute) - Method in class org.kepler.ddp.actor.pattern.DualInputPatternActor
React to a change in an attribute.
attributeChanged(Attribute) - Method in class org.kepler.ddp.actor.pattern.SingleInputPatternActor
React to a change in an attribute.
attributeChanged(Attribute) - Method in class org.kepler.ddp.director.DDPDirector
React to a change in an attribute.
attributeChanged(Attribute) - Method in class org.kepler.ddp.director.DDPEngine
React to a parameter change.
attributeChanged(Attribute) - Method in class org.kepler.gis.actor.bbox.CoverBoundingBox
 
attributeChanged(Attribute) - Method in class org.kepler.gis.actor.bbox.CreateBoundingBox
 
attributeChanged(Attribute) - Method in class org.kepler.gis.actor.calc.JiffleRasterCalculator
 
attributeChanged(Attribute) - Method in class org.kepler.gis.actor.CRSActor
 
attributeChanged(Attribute) - Method in class org.kepler.gis.actor.farsite.GenerateWindFile
 
attributeChanged(Attribute) - Method in class org.kepler.gis.actor.kml.KMLWriter
 
attributeChanged(Attribute) - Method in class org.kepler.gis.actor.pylaski.GetPylaskiMeasurements
 
attributeChanged(Attribute) - Method in class org.kepler.gis.actor.SplitBoundingBox
Deprecated.
 
attributeChanged(Attribute) - Method in class org.kepler.gis.actor.VectorFilter
 
attributeChanged(Attribute) - Method in class org.kepler.gis.actor.VectorSort
 
attributeChanged(Attribute) - Method in class org.kepler.hadoop.actor.HDFSWriter
If the specified attribute is fileName and there is an open file being written, then close that file.
attributeChanged(Attribute) - Method in class org.kepler.monitor.MonitorAttribute
Do updates according to the changed attribute.
attributeChanged(Attribute) - Method in class org.kepler.monitor.MonitorManager
Sets the icon type and timer delay according to the changed attribute.
attributeChanged(Attribute) - Method in class org.kepler.monitor.test.ActorWithProgressBar
Updates the progress bar according to the new parameters.
attributeChanged(Attribute) - Method in class org.kepler.monitor.test.ActorWithTrafficLight
 
attributeChanged(Attribute) - Method in class org.kepler.provenance.opm.OpenProvenanceModelXML
Deprecated.
React to a parameter change.
attributeChanged(Attribute) - Method in class org.kepler.provenance.prov.ProvRecording
React to a parameter change.
attributeChanged(Attribute) - Method in class org.kepler.provenance.ProvenanceRecorder
React to attribute change (of ProvenanceRecorder only).
attributeChanged(Attribute) - Method in class org.kepler.provenance.Recording
React to a change in an attribute.
attributeChanged(Attribute) - Method in class org.kepler.provenance.sql.SQLRecording
React to a change in an attribute.
attributeChanged(Attribute) - Method in class org.kepler.provenance.sql.SQLRecordingV8
React to a change in an attribute.
attributeChanged(Attribute) - Method in class org.kepler.provenance.TextFileRecording
React to a change in an attribute.
attributeChanged(Attribute) - Method in class org.kepler.scriptengine.Jython
React to changes in by attributes named "jythonClassName".
attributeChanged(Attribute) - Method in class org.kepler.scriptengine.ScriptEngineActor
React to an attribute change.
attributeChanged(Attribute) - Method in class org.kepler.spark.actor.SparkConnection
 
attributeChanged(Attribute) - Method in class org.kepler.spark.director.SparkEngine
React to a parameter change.
attributeChanged(Attribute) - Method in class org.kepler.spark.mllib.GetLiveMeasurements
Handles changing the message type parameter, and validates it.
attributeChanged(Attribute) - Method in class org.kepler.webview.actor.WebViewAttribute
React to an attribute change.
attributeChanged(Attribute) - Method in class org.resurgence.actor.BooleanAccumulator
Check the validity of the number parameter value, set the consumption rate of the input port, and, if necessary, invalidate the current schedule of the director.
attributeChanged(Attribute) - Method in class org.resurgence.actor.StatusChecker
If the specified attribute is sleepTime or maxChecks, then get the value of them.
attributeChanged(Attribute) - Method in class org.ROADnet.OrbLogger
If the specified attribute is triggerOutput then create a "triggerReady" output port If the specified attribute is paramOutput then create ports for all the workflow String Parameters If the specified attribute is ErrorOutput then create a "ErrorFile" output port The newly created ports are removed if attribute is unchecked.
attributeChanged(Attribute) - Method in class org.ROADnet.QAQC
Callback for changes in attribute values Get the attributes from the config file.
attributeChanged(Attribute) - Method in class org.sdm.spa.ArrayPermute
React to a change in attributes.
attributeChanged(Attribute) - Method in class org.sdm.spa.BrowserUI
Callback for changes in attribute values.
attributeChanged(Attribute) - Method in class org.sdm.spa.CommandLine
If the specified attribute is showTriggerPort, then get the value of it and re-render the trigger port.
attributeChanged(Attribute) - Method in class org.sdm.spa.CommandLineExec
If the specified attribute is showTriggerPort, then get the value of it and re-render the trigger port.
attributeChanged(Attribute) - Method in class org.sdm.spa.MessageBasedWebService
Deprecated.
Callback for changes in attribute values Get the WSDL from the given URL.
attributeChanged(Attribute) - Method in class org.sdm.spa.SoaplabChooseOperation
Callback for changes in attribute values Get the WSDL from the given URL.
attributeChanged(Attribute) - Method in class org.sdm.spa.SoaplabChooseResultType
Callback for changes in attribute values Get the WSDL from the given URL.
attributeChanged(Attribute) - Method in class org.sdm.spa.SoaplabServiceStarter
Callback for changes in attribute values Get the WSDL from the given URL.
attributeChanged(Attribute) - Method in class org.sdm.spa.Ssh2Exec
Callback for changes in attribute values Get the WSDL from the given URL.
attributeChanged(Attribute) - Method in class org.sdm.spa.SyncOnTerminator
Override the base class to determine which function is being specified.
attributeChanged(Attribute) - Method in class org.sdm.spa.WebService
Callback for changes in attribute values Get the WSDL from the given URL.
attributeChanged(Attribute) - Method in class org.sdm.spa.WebServiceStub
Deprecated.
Callback for changes in attribute values.
attributeChanged(Attribute) - Method in class org.sdm.spa.WSWithComplexTypes
React to a change in an attribute.
attributeChanged(Attribute) - Method in class org.sdm.spa.XMLAssembler
React to a change in an attribute.
attributeChanged(Attribute) - Method in class org.sdm.spa.XMLDisassembler
React to a change in an attribute.
attributeChanged(Attribute) - Method in class org.srb.SProxy
Callback for changes in attribute values.
attributeChanged(Attribute) - Method in class org.srb.SRBProxyCommand
If the specified attribute is showTriggerPort, then get the value of it and re-render the trigger port.
attributeChanged(Attribute) - Method in class org.surge.RecordToStrings
 
attributeChanged(Attribute) - Method in class ptolemy.actor.CommunicationAspectAttributes
If attribute is messageLength report the new value to the communication aspect.
attributeChanged(Attribute) - Method in class ptolemy.actor.Director
Override the base class to update local variables.
attributeChanged(Attribute) - Method in class ptolemy.actor.ExecutionAttributes
React to a change in an attribute.
attributeChanged(Attribute) - Method in class ptolemy.actor.gui.Configuration
React to a change in an attribute.
attributeChanged(Attribute) - Method in class ptolemy.actor.gui.Effigy
If the argument is the identifier parameter, then set the title of all contained Tableaux to the value of the parameter; if the argument is the uri parameter, then check to see whether it is writable, and call setModifiable() appropriately.
attributeChanged(Attribute) - Method in class ptolemy.actor.gui.ExternalTextEffigy
If the argument is the identifier parameter, then tell the external editor to finally open the file specified by the identifier (as opposed to at newTextEffigy(container, text) time at which the document file is not yet specified.
attributeChanged(Attribute) - Method in class ptolemy.actor.gui.HTMLViewerTableau
If the argument is the url parameter, then open the specified URL and display its contents.
attributeChanged(Attribute) - Method in class ptolemy.actor.gui.ImageTokenEffigy
If the argument is the uri parameter, then read the specified URL and parse the data contained in it.
attributeChanged(Attribute) - Method in class ptolemy.actor.gui.PlotTableau
If the argument is the uri parameter, then open the specified URI and display its contents.
attributeChanged(Attribute) - Method in class ptolemy.actor.gui.properties.Button
React to a change in an attribute.
attributeChanged(Attribute) - Method in class ptolemy.actor.gui.properties.GUIProperty
React to a change in an attribute.
attributeChanged(Attribute) - Method in class ptolemy.actor.gui.properties.Separator
React to a change in an attribute.
attributeChanged(Attribute) - Method in class ptolemy.actor.gui.Tableau
If the argument is the size parameter, and a frame has been specified with setFrame(), then set the size of the frame.
attributeChanged(Attribute) - Method in class ptolemy.actor.gui.TokenEffigy
If the argument is the uri parameter, then read the specified URL and parse the data contained in it.
attributeChanged(Attribute) - Method in class ptolemy.actor.gui.WelcomeWindowTableau
Handle cases where the url attribute is changed, yet there is no frame.
attributeChanged(Attribute) - Method in class ptolemy.actor.IOPort
If a communication aspect is added, removed or modified, invalidate the list of communication aspects which is read again in the preinitialize phase.
attributeChanged(Attribute) - Method in class ptolemy.actor.IORelation
React to a change in an attribute.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.CatchExceptionAttribute
React to a change in an attribute.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.Clock
Deprecated.
If the argument is the offsets parameter, check that the array is nondecreasing and has the right dimension; if the argument is period, check that it is positive.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.colt.ColtRandomSource
If the attribute is generatorClass then create the base random number generator.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.comm.ConvolutionalCoder
If the attribute being changed is uncodedRate, then verify that it is a positive integer; if it is polynomialArray, then verify that each of its elements is a positive integer and find the maximum value among them, which is used to compute the highest order among all polynomials.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.comm.DeScrambler
If the attribute being changed is polynomial, then verify that is a positive integer and the lower-order bit is 1.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.comm.HadamardCode
If the attribute being changed is log2Length, then calculate the new Hadamard sequence; if it is index, then verify that is non-negative and check if it is different from the previous value.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.comm.HammingCoder
If the attribute being changed is uncodedRate or uncodedRate, then verify that it is a positive integer.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.comm.HammingDecoder
If the attribute being changed is uncodedRate or uncodedRate, then verify that it is a positive integer.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.comm.HuffmanBasic
If the attribute being changed is pmf, then verify all the elements are positive and their sum is 1.0.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.comm.Scrambler
If the attribute being changed is polynomial, then verify that is a positive integer and the lower-order bit is 1.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.comm.ViterbiDecoder
If the attribute being changed is softDecoding or trellisDecoding, set input port and constellation type to be complex if trellisDecoding is true; else if softDecoding is true, set them to double type; otherwise set the input port to type boolean.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.ComputeHistogram
If the parameter is binWidth or binOffset, then configure the histogram with the specified bin width or offset.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.ConfigurationSelect
React to a change in an attribute.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.ConfigurationSwitch
React to a change in an attribute.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.conversions.DoubleToFix
Override the base class to set locally cached variables.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.conversions.FixToFix
Override the base class to set locally cached variables.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.conversions.Round
Override the base class to determine which function is being specified.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.DiscreteClock
If the argument is the offsets parameter, check that the array is nondecreasing and has the right dimension; if the argument is period, check that it is positive.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.DiscreteRandomSource
If the specified attribute is pmf, then check that its entries are all between zero and one, and that they add to one, and that its dimension is correct.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.Expression
React to a change in the value of an attribute.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.gem5.Gem5Wrapper
If the argument is the init parameter, then reset the state to the specified value.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.GradientAdaptiveLattice
Handle parameter change events on the order and timeConstant parameters.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.gui.ArrayPlotter
Notification that an attribute has changed.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.gui.Display
If the specified attribute is rowsDisplayed, then set the desired number of rows of the textArea, if there is one.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.gui.HistogramPlotter
If the parameter is binWidth or binOffset, then configure the histogram with the specified bin width or offset.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.gui.MatrixViewer
Notification that an attribute has changed.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.gui.Plotter
If the attribute is startingDataset, then check its validity.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.gui.PlotterBase
If the attribute is legend, then parse the string and set the legend.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.gui.SequencePlotter
Notification that an attribute has changed.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.gui.SequenceScope
Notify this that an attribute has changed.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.gui.SketchedSource
If the specified attribute is length, then set the trace to its initial value.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.gui.SliderSource
If the specified attribute is minimum or maximum, then set the range of the slider.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.gui.TimedScope
Notify this that an attribute has changed.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.gui.XYScope
Notify this that an attribute has changed.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.hoc.ApplyFilterOverArray
Override the base class to open the model specified if the attribute is modelFileOrURL, or for other parameters, to cache their values.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.hoc.ModelReference
Override the base class to open the model specified if the attribute is modelFileOrURL, or for other parameters, to cache their values.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.hoc.RealTimeComposite
Deprecated.
React to a change in an attribute.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.hoc.ThreadedComposite
React to a change in an attribute.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.IIR
Handle parameter change events on the numerator and denominator parameters.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.image.ImageReader
If the specified attribute is URL, then close the current file (if there is one) and open the new one.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.image.PGMReader
 
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.Interpolator
Check the validity of the parameter.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.io.CSVReader
If the specified attribute is separator then set a local variable with the value of the separator.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.io.CSVWriter
If the specified attribute is separator then set a local variable with the value of the separator.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.io.DirectoryListing
Override the base class to locally cache parameter values.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.io.LineReader
If the specified attribute is fileOrURL and there is an open file being read, then close that file and open the new one; if the attribute is numberOfLinesToSkip and its value is negative, then throw an exception.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.io.LineWriter
If the specified attribute is fileName and there is an open file being written, then close that file.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.Lattice
If the argument is the reflectionCoefficients parameter, then reallocate the arrays to use.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.LimitedFiringSource
Override the base class to determine which attribute is being specified.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.LinearDifferenceEquationSystem
If the argument is A, B, C, D or initialStates parameters, check that they are indeed matrices and vectors, and request initialization from the director if there is one.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.logic.Comparator
Override the base class to determine which comparison is being specified.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.logic.LogicFunction
Deprecated.
Override the base class to determine which function is being specified.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.logic.LogicGate
Override the base class to determine which function is being specified.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.MathFunction
Deprecated.
Override the base class to determine which function is being specified.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.MovingAverage
Set a flag that causes recalculation of various local variables that are used in execution on the next invocation of fire().
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.NonStrictTest
If the attribute being changed is tolerance, then check that it is increasing and nonnegative.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.PoissonClock
If the argument is the meanTime parameter, check that it is positive.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.PublisherNonStrictTest
If the attribute is the channel, increment the workspace version to force cached receiver lists to be updated, and invalidate the schedule and resolved types of the director, if there is one.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.Pulse
If the attribute being changed is indexes, then check that it is increasing and nonnegative.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.python.PythonScript
If script is changed, invoke the python interpreter to evaluate the script.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.Quantizer
If the argument is the levels parameter, check that the array is increasing and has the right dimension.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.Ramp
If the argument is the init parameter, then reset the state to the specified value.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.RandomSource
If the attribute is seed or useThisSeed then create the base random number generator.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.Reader
Deprecated.
If the specified attribute is URL, then close the current file (if there is one) and open the new one.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.RecursiveLattice
If the argument is the reflectionCoefficients parameter, then reallocate the arrays to use.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.SequentialClock
Deprecated.
If the argument is the offsets parameter, check that the array is nondecreasing and has the right dimension; if the argument is period, check that it is positive.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.string.StringCompare
Override the base class to determine which function is being specified.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.string.StringFunction
Determine the string function to be performed on the input, and set up the necessary fields for the function to be performed.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.string.StringMatches
Override the base class to compile the regular expression if it has changed.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.string.StringReplace
Override the base class to compile a regular expression when it is changed.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.string.StringSimpleReplace
Deprecated.
Override the base class to compile a regular expression when it is changed.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.TimeDelay
If the attribute is delay, then ensure that the value is non-negative.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.TimedSource
If the stopTime parameter is changed and the model is executing, then if the new value is greater than zero and greater than the current time, then ask the director to fire this actor at that time.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.TrigFunction
Override the base class to determine which function is being specified.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.UnaryMathFunction
Override the base class to determine which function is being specified.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.URLDirectoryReader
Deprecated.
If the specified attribute is URL, then close the current file (if there is one) and open the new one.
attributeChanged(Attribute) - Method in class ptolemy.actor.lib.URLReader
If the specified attribute is URL, then close the current file (if there is one) and open the new one.
attributeChanged(Attribute) - Method in class ptolemy.actor.LocalClock
Delegate the call to the director, which handles changes to the parameters of the clock.
attributeChanged(Attribute) - Method in class ptolemy.actor.parameters.DoubleRangeParameter
React to a change in an attribute by ensuring that the current value remains within the range given by min and max.
attributeChanged(Attribute) - Method in class ptolemy.actor.parameters.IntRangeParameter
React to a change in an attribute by ensuring that the current value remains within the range given by min and max.
attributeChanged(Attribute) - Method in class ptolemy.actor.parameters.ParameterSet
If the parameter is fileOrURL, and the specified file name is not null, then open and read the file.
attributeChanged(Attribute) - Method in class ptolemy.actor.parameters.PortParameter
React to a change in an attribute.
attributeChanged(Attribute) - Method in class ptolemy.actor.PublisherPort
If a publish and subscribe channel is set, then set up the connections.
attributeChanged(Attribute) - Method in class ptolemy.actor.SubscriberPort
If a publish and subscribe channel is set, then set up the connections.
attributeChanged(Attribute) - Method in class ptolemy.actor.SubscriptionAggregatorPort
If a publish and subscribe channel is set, then set up the connections.
attributeChanged(Attribute) - Method in class ptolemy.actor.TypedCompositeActor
React to a change in an attribute.
attributeChanged(Attribute) - Method in class ptolemy.actor.TypedIOPort
React to a change in an attribute.
attributeChanged(Attribute) - Method in class ptolemy.data.expr.ChoiceStringParameter
React to a change in an attribute.
attributeChanged(Attribute) - Method in class ptolemy.data.expr.ConstraintMonitor
Override the base class to invalidate if parameters have changed.
attributeChanged(Attribute) - Method in class ptolemy.data.expr.ConstraintMonitor.ConstraintMonitorAttributes
Override the base class so that if the decorator already exists in scope, the decorator becomes a value listener to the value attribute.
AttributeChanged - Class in ptolemy.data.expr.test
Test class that checks to see whether it is ok to cache parameter values.
AttributeChanged(String) - Constructor for class ptolemy.data.expr.test.AttributeChanged
Construct a test class for the attributeChanged() method.
attributeChanged(Attribute) - Method in class ptolemy.data.expr.test.AttributeChanged
Update the cached value of the parameter.
attributeChanged(Attribute) - Method in class ptolemy.data.expr.Variable
React to a change in an attribute.
attributeChanged(Attribute) - Method in class ptolemy.domains.continuous.kernel.ContinuousDirector
React to a change in an attribute.
attributeChanged(Attribute) - Method in class ptolemy.domains.continuous.kernel.ContinuousIntegrator
If the specified attribute is initialState, then reset the state of the integrator to its value.
attributeChanged(Attribute) - Method in class ptolemy.domains.continuous.lib.ContinuousTimeDelay
If the attribute is delay, then ensure that the value is non-negative.
attributeChanged(Attribute) - Method in class ptolemy.domains.continuous.lib.ContinuousTransferFunction
If the argument is the numerator or the denominator parameters, request for initialization from the director if there is one.
attributeChanged(Attribute) - Method in class ptolemy.domains.continuous.lib.DifferentialSystem
If the argument is any parameter other than stateVariableNames t, or any parameter matching an input port, then request reinitialization.
attributeChanged(Attribute) - Method in class ptolemy.domains.continuous.lib.EventSource
Deprecated.
If the argument is the offsets parameter, check that the array is nondecreasing and has the right dimension; if the argument is period, check that it is positive.
attributeChanged(Attribute) - Method in class ptolemy.domains.continuous.lib.LevelCrossingDetector
Update the attribute if it has been changed.
attributeChanged(Attribute) - Method in class ptolemy.domains.continuous.lib.LinearStateSpace
If the argument is A, B, C, D or initialState parameters, check that they are indeed matrices and vectors, and request for initialization from the director if there is one.
attributeChanged(Attribute) - Method in class ptolemy.domains.continuous.lib.PeriodicSampler
If the attribute is microstep, adjust the causality interface.
attributeChanged(Attribute) - Method in class ptolemy.domains.continuous.lib.Waveform
Check the validity of the parameter.
attributeChanged(Attribute) - Method in class ptolemy.domains.ddf.kernel.DDFDirector
If the attribute being changed is runUntilDeadlockInOneIteration and it is set to be true, then verify this director is not at the top level.
attributeChanged(Attribute) - Method in class ptolemy.domains.de.kernel.DEDirector
Update the director parameters when attributes are changed.
attributeChanged(Attribute) - Method in class ptolemy.domains.de.lib.MostRecent
If the initialValue parameter is the argument, then reset the current output to match the new value.
attributeChanged(Attribute) - Method in class ptolemy.domains.de.lib.PID
If the attribute is Kp, Ki, or Kd then ensure that the value is numeric.
attributeChanged(Attribute) - Method in class ptolemy.domains.de.lib.QuantizedSampler
If the argument is the quantum parameter, then cache the value.
attributeChanged(Attribute) - Method in class ptolemy.domains.de.lib.Queue
React to a change in an attribute.
attributeChanged(Attribute) - Method in class ptolemy.domains.de.lib.Server
If the attribute is serviceTime, then ensure that the value is non-negative, and if the attribute is capacity, then change the capacity of the queue.
attributeChanged(Attribute) - Method in class ptolemy.domains.de.lib.TimedDelay
Deprecated.
If the attribute is delay, then ensure that the value is non-negative.
attributeChanged(Attribute) - Method in class ptolemy.domains.de.lib.VariableDelay
Deprecated.
If the attribute is delay, then ensure that the value is non-negative.
attributeChanged(Attribute) - Method in class ptolemy.domains.modal.kernel.FSMActor
If the attribute is seed then create the base random number generator.
attributeChanged(Attribute) - Method in class ptolemy.domains.modal.kernel.FSMDirector
React to a change in an attribute.
attributeChanged(Attribute) - Method in class ptolemy.domains.modal.kernel.ia.InterfaceAutomatonTransition
React to a change in an attribute.
attributeChanged(Attribute) - Method in class ptolemy.domains.modal.kernel.State
React to a change in an attribute.
attributeChanged(Attribute) - Method in class ptolemy.domains.modal.kernel.Transition
React to a change in an attribute.
attributeChanged(Attribute) - Method in class ptolemy.domains.modal.modal.ModalModel
React to a change of the director or other property.
attributeChanged(Attribute) - Method in class ptolemy.domains.modal.modal.ModalPort
React to attribute changes.
attributeChanged(Attribute) - Method in class ptolemy.domains.modal.modal.RefinementPort
React to attribute changes.
attributeChanged(Attribute) - Method in class ptolemy.domains.pn.demo.QR.StreamToMatrix
If the argument is the dimension parameter, update the the row and column values.
attributeChanged(Attribute) - Method in class ptolemy.domains.sdf.kernel.SDFDirector
React to a change in an attribute.
attributeChanged(Attribute) - Method in class ptolemy.domains.sdf.lib.ArrayToSequence
If the argument is the arrayLength parameter, then check to make sure its value is not negative.
attributeChanged(Attribute) - Method in class ptolemy.domains.sdf.lib.Autocorrelation
Check to see that the numberOfInputs parameter is positive, and that the numberOfLags parameter is positive.
attributeChanged(Attribute) - Method in class ptolemy.domains.sdf.lib.BitsToInt
If the argument is the numberOfBits parameter, then set the production rate of the output port.
attributeChanged(Attribute) - Method in class ptolemy.domains.sdf.lib.Chop
Check the validity of parameter values and using the new values, recompute the size of the internal buffers.
attributeChanged(Attribute) - Method in class ptolemy.domains.sdf.lib.DoubleToMatrix
Deprecated.
Ensure that the rows and columns parameters are both positive.
attributeChanged(Attribute) - Method in class ptolemy.domains.sdf.lib.DownSample
Ensure that the factor and phase parameters are both positive.
attributeChanged(Attribute) - Method in class ptolemy.domains.sdf.lib.FFT
Ensure that the order parameter is positive and recompute the size of internal buffers.
attributeChanged(Attribute) - Method in class ptolemy.domains.sdf.lib.FIR
Set a flag that causes recalculation of various local variables that are used in execution on the next invocation of fire().
attributeChanged(Attribute) - Method in class ptolemy.domains.sdf.lib.IFFT
Ensure that the order parameter is positive and recompute the size of internal buffers.
attributeChanged(Attribute) - Method in class ptolemy.domains.sdf.lib.IntToBits
If the argument is the numberOfBits parameter, then set the production rate of the output port.
attributeChanged(Attribute) - Method in class ptolemy.domains.sdf.lib.LMSAdaptive
Override the base class to set the taps parameter if the initialTaps parameter is changed.
attributeChanged(Attribute) - Method in class ptolemy.domains.sdf.lib.MatrixJoin
Ensure that the rows and columns parameters are both positive.
attributeChanged(Attribute) - Method in class ptolemy.domains.sdf.lib.MatrixToDouble
Deprecated.
Ensure that the rows and columns parameters are both positive.
attributeChanged(Attribute) - Method in class ptolemy.domains.sdf.lib.MatrixToSequence
Ensure that the rows and columns parameters are both positive.
attributeChanged(Attribute) - Method in class ptolemy.domains.sdf.lib.RaisedCosine
Reevaluate the filter taps if the attribute is any of the ones defined locally, and otherwise call the superclass.
attributeChanged(Attribute) - Method in class ptolemy.domains.sdf.lib.Repeat
Ensure that the numberOfTimes parameter and the blockSize parameter are both positive.
attributeChanged(Attribute) - Method in class ptolemy.domains.sdf.lib.SequenceToArray
Ensure that the arrayLength parameter is not negative.
attributeChanged(Attribute) - Method in class ptolemy.domains.sdf.lib.SequenceToMatrix
Ensure that the rows and columns parameters are both positive.
attributeChanged(Attribute) - Method in class ptolemy.domains.sdf.lib.UpSample
Ensure that the factor and phase parameters are both positive.
attributeChanged(Attribute) - Method in class ptolemy.domains.sdf.lib.VariableFIR
Set a flag that causes recalculation of various local variables that are used in execution on the next invocation of fire().
attributeChanged(Attribute) - Method in class ptolemy.domains.sdf.lib.VariableLattice
Ensure that the blockSize parameter is positive.
attributeChanged(Attribute) - Method in class ptolemy.domains.sdf.lib.VariableRecursiveLattice
Ensure that the blockSize parameter is positive.
attributeChanged(Attribute) - Method in class ptolemy.domains.sdf.optimize.OptimizingSDFDirector
React to a change in an attribute.
attributeChanged(Attribute) - Method in class ptolemy.kernel.util.DecoratorAttributes
Override the base class to establish a link to the decorator if the argument is decoratorName.
attributeChanged(Attribute) - Method in class ptolemy.kernel.util.NamedObj
React to a change in an attribute.
attributeChanged(Attribute) - Method in class ptolemy.moml.MoMLModelAttribute
React to a change in an attribute.
attributeChanged(Attribute) - Method in class ptolemy.vergil.actor.lib.ModelDisplay
React to a change in an attribute.
attributeChanged(Attribute) - Method in class ptolemy.vergil.actor.lib.VisualModelReference
Override the base class to open the model specified if the attribute is modelFileOrURL, or for other parameters, to cache their values.
attributeChanged(Attribute) - Method in class ptolemy.vergil.basic.export.web.Title
React to a changes in the attributes by changing the icon.
attributeChanged(Attribute) - Method in class ptolemy.vergil.basic.export.web.WebContent
Override the base class to update the icon.
attributeChanged(Attribute) - Method in class ptolemy.vergil.basic.export.web.WebExportParameters
React to a change in an attribute.
attributeChanged(Attribute) - Method in class ptolemy.vergil.icon.NameIcon
React to a changes in the attributes by changing the icon.
attributeChanged(Attribute) - Method in class ptolemy.vergil.icon.UpdatedValueIcon
Override the base class to identify the named attribute in the container and to attach a listener to it.
attributeChanged(Attribute) - Method in class ptolemy.vergil.kernel.attributes.AbstractTextAttribute
React to a changes in the attributes by changing the icon.
attributeChanged(Attribute) - Method in class ptolemy.vergil.kernel.attributes.ArcAttribute
React to changes in attribute values.
attributeChanged(Attribute) - Method in class ptolemy.vergil.kernel.attributes.ArrowAttribute
React to a changes in the attributes by changing the icon.
attributeChanged(Attribute) - Method in class ptolemy.vergil.kernel.attributes.AttributeValueAttribute
React to a changes in the attributes by changing the icon.
attributeChanged(Attribute) - Method in class ptolemy.vergil.kernel.attributes.FilledShapeAttribute
React to a changes in the attributes by changing the icon.
attributeChanged(Attribute) - Method in class ptolemy.vergil.kernel.attributes.IDAttribute
React to a change in an attribute.
attributeChanged(Attribute) - Method in class ptolemy.vergil.kernel.attributes.ImageAttribute
React to a change in the source or scale attributes by changing the icon.
attributeChanged(Attribute) - Method in class ptolemy.vergil.kernel.attributes.LineAttribute
React to a changes in the attributes by changing the icon.
attributeChanged(Attribute) - Method in class ptolemy.vergil.kernel.attributes.RectangleAttribute
React to a changes in the attributes by changing the icon.
attributeChanged(Attribute) - Method in class ptolemy.vergil.kernel.attributes.ResizablePolygonAttribute
React to a changes in the attributes by changing the icon.
attributeChanged(Attribute) - Method in class ptolemy.vergil.kernel.attributes.ShapeAttribute
React to a changes in the attributes by changing the icon.
attributeChanged(Attribute) - Method in class ptolemy.vergil.kernel.attributes.TextAttribute
React to a changes in the attributes by changing the icon.
attributeChanged(Attribute) - Method in class ptolemy.vergil.pdfrenderer.PDFAttribute
React to a change in the source or scale attributes by changing the icon.
AttributeController - Class in ptolemy.vergil.kernel
This class provides interaction with nodes that represent Ptolemy II attributes.
AttributeController(GraphController) - Constructor for class ptolemy.vergil.kernel.AttributeController
Create an attribute controller associated with the specified graph controller.
AttributeController(GraphController, AttributeController.Access) - Constructor for class ptolemy.vergil.kernel.AttributeController
Create an attribute controller associated with the specified graph controller.
AttributeController.Access - Class in ptolemy.vergil.kernel
A static enumerator for constructor arguments.
attributeDeleted(Attribute) - Method in class ptolemy.kernel.util.NamedObj
React to the deletion of an attribute.
AttributeExpressionAttribute - Class in ptolemy.vergil.kernel.attributes
This is a text attribute whose text string is derived from the expression of a parameter.
AttributeExpressionAttribute(NamedObj, String) - Constructor for class ptolemy.vergil.kernel.attributes.AttributeExpressionAttribute
Construct an attribute with the given name contained by the specified container.
AttributeInfo(String, String) - Constructor for class org.sdm.spa.util.ActorInspector.AttributeInfo
 
AttributeList - Class in org.kepler.objectmanager.data.db
 
AttributeList() - Constructor for class org.kepler.objectmanager.data.db.AttributeList
Constructor
attributeList() - Method in class ptolemy.kernel.util.NamedObj
Return a list of the attributes contained by this object.
attributeList(Class<T>) - Method in class ptolemy.kernel.util.NamedObj
Return a list of the attributes contained by this object that are instances of the specified class.
attributeList() - Method in interface ptolemy.kernel.util.ScopeExtender
Return a list of the attributes contained by this object.
attributeList() - Method in class ptolemy.moml.EntityLibrary
Return a list of the attributes contained by this object.
attributeList(Class) - Method in class ptolemy.moml.EntityLibrary
Return a list of the attributes contained by this object that are instances of the specified class.
attributeName - Variable in class org.kepler.gis.actor.conversions.VectorToRaster
The attribute in the features to use as the raster values.
attributeName - Variable in class ptolemy.vergil.icon.AttributeValueIcon
The name of the attribute of the container whose value to display.
attributeName - Variable in class ptolemy.vergil.kernel.attributes.AttributeValueAttribute
The name of the attribute of the container whose value to display.
attributeName - Variable in class ptolemy.vergil.toolbox.FileEditorTableauFactory
The name of the file attribute giving the file name or URL.
attributeName - Variable in class ptolemy.vergil.toolbox.TextEditorConfigureFactory
The name of the string attribute that is to be edited.
attributeName - Variable in class ptolemy.vergil.toolbox.TextEditorTableauFactory
The name of the string attribute that is to be edited.
attributeNameSet() - Method in class ptolemy.vergil.toolbox.GraphicElement
Return a set of all the attribute names, where each element of the set is a String.
AttributeNodeModel - Class in ptolemy.vergil.kernel
A model for an attribute as a diva graph node.
AttributeNodeModel() - Constructor for class ptolemy.vergil.kernel.AttributeNodeModel
 
attributes - Variable in class org.srb.SRBCreateQueryInterface
A list of attribute names for querying.
ATTRIBUTES - Static variable in class ptolemy.kernel.util.NamedObj
Indicate that the description(int) method should include attributes (if any).
attributeTypeChanged(Attribute) - Method in class ptolemy.actor.TypedAtomicActor
React to a change in the type of an attribute.
attributeTypeChanged(Attribute) - Method in class ptolemy.actor.TypedCompositeActor
React to a change in the type of an attribute.
attributeTypeChanged(Attribute) - Method in class ptolemy.domains.sdf.lib.DelayLine
Override the base class to allow type changes on initialValues.
attributeTypeChanged(Attribute) - Method in class ptolemy.domains.sdf.lib.SampleDelay
Override the base class to allow type changes on initialOutputs.
attributeTypeChanged(Attribute) - Method in class ptolemy.kernel.util.NamedObj
React to a change in the type of an attribute.
AttributeValueAttribute - Class in ptolemy.vergil.kernel.attributes
This is a text attribute whose text string shows the value of a parameter.
AttributeValueAttribute(NamedObj, String) - Constructor for class ptolemy.vergil.kernel.attributes.AttributeValueAttribute
Construct an attribute with the given name contained by the specified container.
AttributeValueIcon - Class in ptolemy.vergil.icon
An icon that displays the value of an attribute of the container or of some other entity contained by the container.
AttributeValueIcon(NamedObj, String) - Constructor for class ptolemy.vergil.icon.AttributeValueIcon
Create a new icon with the given name in the given container.
AttributeWithIconController - Class in ptolemy.vergil.kernel
This class provides interaction with nodes that represent that can have custom icons.
AttributeWithIconController(GraphController) - Constructor for class ptolemy.vergil.kernel.AttributeWithIconController
Create a controller associated with the specified graph controller.
AttributeWithIconController(GraphController, AttributeController.Access) - Constructor for class ptolemy.vergil.kernel.AttributeWithIconController
Create a controller associated with the specified graph controller.
AttTypeMapper - Class in org.kepler.dataproxy.datasource.opendap
User: ndp Date: Jun 16, 2008 Time: 4:41:03 PM
AttTypeMapper() - Constructor for class org.kepler.dataproxy.datasource.opendap.AttTypeMapper
 
Audio - Class in ptolemy.media
Instances of this class represent audio data equivalent to that contained by a Sun/NeXT audio file (.au file).
Audio(byte[]) - Constructor for class ptolemy.media.Audio
Construct an instance initialized with the audio signal given by the argument.
Audio(double[]) - Constructor for class ptolemy.media.Audio
Construct an instance initialized with the audio signal given by the argument.
Audio(DataInputStream) - Constructor for class ptolemy.media.Audio
Construct an instance and initialize it by reading the specified stream.
audio - Variable in class ptolemy.media.Audio
Audio data, by channel.
authDomain - Variable in class org.kepler.objectmanager.repository.Repository
 
authenDomainForSourceKar - Static variable in class org.kepler.workflowscheduler.gui.SchedulerAbstractAction
 
authenticate(Domain) - Method in class org.kepler.authentication.AuthenticationService
Authenticate a user
authenticate(Domain) - Method in class org.kepler.authentication.GAMAAuthenticationService
Use the GAMA authentication service to get credential returns null if the user cancels the action.
authenticate(Domain) - Method in class org.kepler.authentication.LDAPAuthenticationService
Use LDAP to authenticate the user
authenticate(Domain, String, String) - Method in class org.kepler.authentication.LDAPAuthenticationService
this method authenticates using a full dn instead of breaking it into username and org
authenticate(Domain, String, String, String) - Method in class org.kepler.authentication.LDAPAuthenticationService
this method authenticates without creating a gui popup window for the user.
AUTHENTICATE - Static variable in class org.kepler.gui.ComponentLibraryTab
 
authenticate(boolean) - Method in class org.kepler.ssh.GsiSshExec
 
authenticate(JsonObject, Handler<AsyncResult<User>>) - Method in class org.kepler.webview.server.auth.DrupalAuth
 
authenticate(JsonObject, Handler<AsyncResult<User>>) - Method in class org.kepler.webview.server.auth.NoneAuth
 
authenticate(JsonObject, Handler<AsyncResult<User>>) - Method in class org.kepler.webview.server.auth.SimpleAuth
 
AuthenticateAction - Class in org.kepler.gui
This action displays the dialog to login using the AuthenticationManager First the user is prompted for the appropriate domain name to use for authentication.
AuthenticateAction(TableauFrame) - Constructor for class org.kepler.gui.AuthenticateAction
Constructor
AuthenticateAction(TableauFrame, AuthenticationListener) - Constructor for class org.kepler.gui.AuthenticateAction
Constructor
authenticatedQueryPath - Variable in class org.kepler.objectmanager.repository.Repository
 
AUTHENTICATEDQUERYSERVICETYPE - Static variable in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
 
authenticateForService(EcoGridService) - Method in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
Provides an authentication credential for the given service object (if possible) Note that there may not be adequate information in the EcoGridServicesController to support authentication for every service.
AUTHENTICATION_MAPPING - Static variable in class org.ecoinformatics.seek.ecogrid.MetadataSpecificationInterface
 
AUTHENTICATION_SERVICECLASS - Static variable in class org.ecoinformatics.seek.ecogrid.MetadataSpecificationInterface
 
AUTHENTICATION_SERVICETYPE - Static variable in class org.ecoinformatics.seek.ecogrid.MetadataSpecificationInterface
 
authenticationComplete(int, String, String) - Method in interface org.kepler.authentication.AuthenticationListener
Call back method when authentication process is done
authenticationComplete(int, String, String) - Method in class org.kepler.workflowscheduler.gui.SchedulerAbstractAction
Call back method of AuthenticatListener.
AuthenticationException - Exception in org.kepler.authentication
This is an exception class for the authentication package to throw when there's an error.
AuthenticationException() - Constructor for exception org.kepler.authentication.AuthenticationException
constructor
AuthenticationException(String) - Constructor for exception org.kepler.authentication.AuthenticationException
constructor
AuthenticationException(String, Throwable) - Constructor for exception org.kepler.authentication.AuthenticationException
constructor
AuthenticationException(Throwable) - Constructor for exception org.kepler.authentication.AuthenticationException
constructor
AuthenticationListener - Interface in org.kepler.authentication
A listener for authentication process
AuthenticationManager - Class in org.kepler.authentication
AuthenticationManager manages all the authentication issue for the user.
AuthenticationService - Class in org.kepler.authentication
AuthenticationService is responsible for contact the GAMA service and get back the credential for the user
AuthenticationService() - Constructor for class org.kepler.authentication.AuthenticationService
 
authenticationServiceURLForSourceKar - Static variable in class org.kepler.workflowscheduler.gui.SchedulerAbstractAction
 
AuthenticationWithDomainNameAction - Class in org.kepler.gui
This class represents an action to authenticate a user without the selection of the authentication domain.
AuthenticationWithDomainNameAction(TableauFrame, String) - Constructor for class org.kepler.gui.AuthenticationWithDomainNameAction
Constructor
AuthenticationWithDomainNameAction(TableauFrame, AuthenticationListener, String) - Constructor for class org.kepler.gui.AuthenticationWithDomainNameAction
Constructor
authenURLParam - Variable in class org.ecoinformatics.seek.ecogrid.EcogridWriter
Ecogrid service URL for authenticating user
authListener - Variable in class org.kepler.authentication.AuthenticationService
 
AuthNamespace - Class in org.kepler.util
This class contains an Authority and a Namespace to be used for uniquely generating KeplerLSIDs.
AuthNamespace() - Constructor for class org.kepler.util.AuthNamespace
Constructor.
author - Variable in class ptolemy.vergil.basic.DocAttribute
The author field.
author - Variable in class ptolemy.vergil.kernel.attributes.IDAttribute
The author of the model.
authority - Variable in class org.ecoinformatics.seek.taxon.GetTaxa
 
authorizationPath - Variable in class org.kepler.objectmanager.repository.Repository
 
authProtocol - Variable in class org.kepler.objectmanager.repository.Repository
 
AUTHSERVICETYPE - Static variable in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
 
AuthUtilities - Class in org.kepler.webview.server.auth
Utilities for authentication.
AuthUtilities() - Constructor for class org.kepler.webview.server.auth.AuthUtilities
 
Auto32Tests - Class in ptolemy.util.test.junit
Run the Ptolemy model tests in the auto/ directory using JUnit.
Auto32Tests() - Constructor for class ptolemy.util.test.junit.Auto32Tests
 
AUTO_INTTOKEN - Static variable in class ptolemy.domains.sdf.kernel.SDFDirector
The value used to signify special behavior for the iterations parameter.
AUTO_NAME - Static variable in class ptolemy.domains.sdf.kernel.SDFDirector
The name of the AUTO iterations parameter choice: "AUTO".
AutoCGCInlineTests - Class in ptolemy.util.test.junit
Run the Ptolemy model tests in the auto/ directory using cg code generation under JUnit with inlining.
AutoCGCInlineTests() - Constructor for class ptolemy.util.test.junit.AutoCGCInlineTests
 
AutoCGCKnownFailedTests - Class in ptolemy.util.test.junit
Run the Ptolemy model tests in the auto/knownFailedTests directory using cg C language code generation under JUnit.
AutoCGCKnownFailedTests() - Constructor for class ptolemy.util.test.junit.AutoCGCKnownFailedTests
 
AutoCGCNoInlineArduinoTests - Class in ptolemy.util.test.junit
Run the Ptolemy model tests in the auto/ directory using cg code generation under JUnit without inlining for the Arduino target The DE codegen facility does not work with inlining.
AutoCGCNoInlineArduinoTests() - Constructor for class ptolemy.util.test.junit.AutoCGCNoInlineArduinoTests
 
AutoCGCNoInlineDuktapeTests - Class in ptolemy.util.test.junit
Run the Ptolemy model tests in the auto/ directory using cg code generation under JUnit without inlining for the Duktape target.
AutoCGCNoInlineDuktapeTests() - Constructor for class ptolemy.util.test.junit.AutoCGCNoInlineDuktapeTests
 
AutoCGCNoInlineTests - Class in ptolemy.util.test.junit
Run the Ptolemy model tests in the auto/ directory using cg code generation under JUnit without inlining.
AutoCGCNoInlineTests() - Constructor for class ptolemy.util.test.junit.AutoCGCNoInlineTests
 
AutoCGCTests - Class in ptolemy.util.test.junit
Run the Ptolemy model tests in the auto/ directory using cg code generation under JUnit.
AutoCGCTests() - Constructor for class ptolemy.util.test.junit.AutoCGCTests
 
AutoCGFMIMAKnownFailedTests - Class in ptolemy.util.test.junit
Run the Ptolemy model tests in the auto/knownFailedTests/ directory using Functional Mock-up Interface Master Algorithm (FMIMA) code generation under JUnit.
AutoCGFMIMAKnownFailedTests() - Constructor for class ptolemy.util.test.junit.AutoCGFMIMAKnownFailedTests
 
AutoCGFMIMANoInlineTests - Class in ptolemy.util.test.junit
Run the Ptolemy model tests in the auto/ directory using Functional Mock-up Interface Master Algorithm (FMIMA) code generation under JUnit.
AutoCGFMIMANoInlineTests() - Constructor for class ptolemy.util.test.junit.AutoCGFMIMANoInlineTests
 
AutoCGJavaKnownFailedTests - Class in ptolemy.util.test.junit
Run the Ptolemy model tests in the auto/knownFailedTests directory using cg Java language code generation under JUnit.
AutoCGJavaKnownFailedTests() - Constructor for class ptolemy.util.test.junit.AutoCGJavaKnownFailedTests
 
AutoCGJavaTests - Class in ptolemy.util.test.junit
Run the Ptolemy model tests in the auto/ directory using cg code generation under JUnit.
AutoCGJavaTests() - Constructor for class ptolemy.util.test.junit.AutoCGJavaTests
 
AutoCGKnownFailedTests - Class in ptolemy.util.test.junit
Run the Ptolemy model tests in the auto/knownFailedTests/ directory using cg code generation under JUnit.
AutoCGKnownFailedTests() - Constructor for class ptolemy.util.test.junit.AutoCGKnownFailedTests
 
AutoCGNoInlineAccessorTests - Class in ptolemy.util.test.junit
Run the Ptolemy model tests in the auto/ directory using cg code generation under JUnit without inlining for the Accessor target.
AutoCGNoInlineAccessorTests() - Constructor for class ptolemy.util.test.junit.AutoCGNoInlineAccessorTests
 
AutoCGTests - Class in ptolemy.util.test.junit
Run the Ptolemy model tests in the auto/ directory using cg code generation under JUnit.
AutoCGTests() - Constructor for class ptolemy.util.test.junit.AutoCGTests
 
AutoCompleteComboBox - Class in org.kepler.tagging.gui
Created by IntelliJ IDEA.
AutoCompleteComboBox(TagBarDisplayUI, CompositeActor, ExistingTagsPanel) - Constructor for class org.kepler.tagging.gui.AutoCompleteComboBox
 
autocorrelation - Variable in class ptolemy.actor.lib.LevinsonDurbin
The autocorrelation input, which is an array.
Autocorrelation - Class in ptolemy.domains.sdf.lib
This actor calculates the autocorrelation of a sequence of input tokens.
Autocorrelation(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.Autocorrelation
Construct an actor with the given container and name.
autoCorrelation(double[], int, int, int) - Static method in class ptolemy.math.DoubleArrayStat
Return a new array that is the auto-correlation of the argument array, starting and ending at user-specified lag values.
autoCorrelationAt(double[], int, int) - Static method in class ptolemy.math.DoubleArrayStat
Return the auto-correlation of an array at a certain lag value, summing over a certain number of samples defined by : Rxx[d] = sum of i = 0 to N - 1 of x[i] * x[i + d] N must be non-negative, but large numbers are ok because this routine will not overrun reading of the arrays.
autoHDFSStage - Variable in class org.kepler.hadoop.director.HadoopEngine
If true, input and output in local file system is automatically staged into or out from HDFS.
autoIncColumnName - Variable in class org.sdm.spa.DatabaseWriter
Name of column to auto-increment.
AUTOINCID - Static variable in class org.kepler.util.sql.Column
An auto-incrementing integer column.
autoIncValue - Variable in class org.sdm.spa.DatabaseWriter
Auto-increment value.
AutoKnownFailedTests - Class in ptolemy.util.test.junit
Run the Ptolemy model tests in the auto/knownFailedTest/ directory using JUnit.
AutoKnownFailedTests() - Constructor for class ptolemy.util.test.junit.AutoKnownFailedTests
 
automaticRescale - Variable in class ptolemy.actor.lib.gui.PlotterBase
If true, the plot will automatically rescale if necessary.
autoNameArch() - Static method in class ptolemy.util.test.junit.AutoNameArchTests
Return the auto directory for the current architecture, for example "macosx-x86_64/".
AutoNameArchTests - Class in ptolemy.util.test.junit
Run the Ptolemy model tests in the auto/os.name-os.arch directory using JUnit.
AutoNameArchTests() - Constructor for class ptolemy.util.test.junit.AutoNameArchTests
 
autoResize - Variable in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Parameter specifying if the figure should be auto-resized based on the window size.
AutoTests - Class in ptolemy.util.test.junit
Run the Ptolemy model tests in the auto/ directory using JUnit.
AutoTests() - Constructor for class ptolemy.util.test.junit.AutoTests
 
AvailableModulesPanel - Class in org.kepler.modulemanager.gui
Created by David Welker.
AvailableModulesPanel() - Constructor for class org.kepler.modulemanager.gui.AvailableModulesPanel
 
Average - Class in ptolemy.actor.lib
Output the average of the inputs after the last time a true token is received at the reset port.
Average(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Average
Construct an actor with the given container and name.
AverageGenomeSizeParserV2 - Class in org.camera.service
Calculates the Average Genome Size for a meta genome sample.
AverageGenomeSizeParserV2(CompositeEntity, String) - Constructor for class org.camera.service.AverageGenomeSizeParserV2
 
AverageOverTime - Class in ptolemy.domains.de.lib
An actor to compute the average of the input values received so far over model time.
AverageOverTime(CompositeEntity, String) - Constructor for class ptolemy.domains.de.lib.AverageOverTime
Construct an actor with the given container and name.
AWTContainer - Class in ptolemy.actor.gui
The portable container that wraps java.awt.Container.
AWTContainer(Container) - Constructor for class ptolemy.actor.gui.AWTContainer
Create a new instance of the object by wrapping the provided container.
AWTImageToken - Class in ptolemy.data
A token that contains a java.awt.Image.
AWTImageToken(Image) - Constructor for class ptolemy.data.AWTImageToken
Construct a token with a specified java.awt.Image.

B

B - Variable in class ptolemy.actor.lib.LinearDifferenceEquationSystem
The B matrix in the state-space representation.
B - Variable in class ptolemy.actor.lib.tutorial.SimpleALU
Input port for the second operand.
B - Variable in class ptolemy.actor.lib.tutorial.StaticALU
Input port for the second operand.
B - Variable in class ptolemy.domains.continuous.lib.LinearStateSpace
The B matrix in the state-space representation.
back() - Method in class org.json.JSONTokener
Back up one character.
BACKGROUND_COLOR - Static variable in class org.kepler.gui.KeplerGraphFrame
Override the BasicGraphFrame Background color
BACKGROUND_COLOR - Static variable in class ptolemy.vergil.basic.BasicGraphFrame
Default background color is a light grey.
BACKGROUND_COLOR - Static variable in class ptolemy.vergil.modal.FSMGraphTableau
The default background color.
backgroundColor - Variable in class ptolemy.actor.gui.PtolemyPreferences
The background color.
backgroundColor - Variable in class ptolemy.vergil.basic.export.web.WebExportParameters
Background color.
backgroundColor - Variable in class ptolemy.vergil.basic.ExportParameters
Background color.
BackProp - Class in org.ecoinformatics.seek.backprop
 
BackProp(CompositeEntity, String) - Constructor for class org.ecoinformatics.seek.backprop.BackProp
BackProp Actor
backup(int) - Method in class ptolemy.data.expr.SimpleCharStream
Backup a number of characters.
backup(int) - Method in class ptolemy.moml.unit.SimpleCharStream
Backup a number of characters.
BackwardCompatibility - Class in ptolemy.moml.filter
Return a list where each element is a backward compatibility filter to be applied by the MoMLParser.
BackwardCompatibility() - Constructor for class ptolemy.moml.filter.BackwardCompatibility
 
backwardReachableNodes(Node) - Method in class ptolemy.graph.DirectedGraph
Find all the nodes that can be reached backward from the specified node.
backwardReachableNodes(Object) - Method in class ptolemy.graph.DirectedGraph
Find all the nodes that can be reached backward from the specified node (weights version).
backwardReachableNodes(Collection) - Method in class ptolemy.graph.DirectedGraph
Find all the nodes that can be reached backward from the specified collection of nodes.
backwardReachableNodes(Object[]) - Method in class ptolemy.graph.DirectedGraph
Find all the nodes that can be reached backward from the specified collection of nodes (weights version).
BAD_FIELDNAME - Static variable in class org.ecoinformatics.seek.querybuilder.DBQueryDefParserEmitter
a field name was used that could not be found in the schema
BAD_TABLENAME - Static variable in class org.ecoinformatics.seek.querybuilder.DBQueryDefParserEmitter
a table name was used that could not be found in the schema
BAD_USER - Static variable in exception org.kepler.authentication.AuthenticationException
set this type if the auth failed due to bad pw or username
BandlimitedNoise - Class in ptolemy.domains.continuous.lib
This actor generates continuous-time noise with a Gaussian distribution and controlled bandwidth.
BandlimitedNoise(CompositeEntity, String) - Constructor for class ptolemy.domains.continuous.lib.BandlimitedNoise
Construct an actor with the given container and name.
bandwidth - Variable in class ptolemy.domains.continuous.lib.BandlimitedNoise
The bandwidth of the noise random process in Hertz.
BANG - Static variable in class org.json.XML
The Character '!'.
BareBonesBrowserLaunch() - Constructor for class org.geon.BrowserDisplay.BareBonesBrowserLaunch
 
BarGraph - Class in ptolemy.actor.lib.gui
A bar graph plotter.
BarGraph(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.gui.BarGraph
Construct an actor with the given container and name.
baseClass - Variable in class ptolemy.vergil.kernel.attributes.IDAttribute
The base class of the containing class or entity.
BaseFigure - Class in org.kepler.monitor.figure
A base class for some of the offered figures.
BaseFigure(RectangularShape) - Constructor for class org.kepler.monitor.figure.BaseFigure
 
BaseFigure.Orientation - Enum in org.kepler.monitor.figure
Two possible orientations for a monitor figure.
BaseHandler - Class in org.kepler.webview.server.handler
Handler base class.
BaseHandler(WebViewServer) - Constructor for class org.kepler.webview.server.handler.BaseHandler
 
BaseSDFScheduler - Class in ptolemy.domains.sdf.kernel
This class factors code out of the SDF domain, for use in different schedulers, so that they can be implemented in a consistent fashion.
BaseSDFScheduler() - Constructor for class ptolemy.domains.sdf.kernel.BaseSDFScheduler
Construct a scheduler with no container(director) in the default workspace, the name of the scheduler is "Scheduler".
BaseSDFScheduler(Workspace) - Constructor for class ptolemy.domains.sdf.kernel.BaseSDFScheduler
Construct a scheduler in the given workspace with the name "Scheduler".
BaseSDFScheduler(Director, String) - Constructor for class ptolemy.domains.sdf.kernel.BaseSDFScheduler
Construct a scheduler in the given container with the given name.
BaseType - Class in ptolemy.data.type
The type of base token classes.
BaseType.ArrayBottomType - Class in ptolemy.data.type
The bottom element of the array type lattice.
BaseType.BooleanType - Class in ptolemy.data.type
The boolean data type.
BaseType.ComplexType - Class in ptolemy.data.type
The complex data type.
BaseType.DateType - Class in ptolemy.data.type
The date data type.
BaseType.DoubleType - Class in ptolemy.data.type
The double data type.
BaseType.EventType - Class in ptolemy.data.type
The event data type.
BaseType.FloatType - Class in ptolemy.data.type
The float data type.
BaseType.GeneralType - Class in ptolemy.data.type
The general data type: The top of the lattice.
BaseType.IntType - Class in ptolemy.data.type
The integer data type.
BaseType.LongType - Class in ptolemy.data.type
The long integer data type.
BaseType.NilType - Class in ptolemy.data.type
The nil data type.
BaseType.PetiteType - Class in ptolemy.data.type
The petite data type.
BaseType.ScalarType - Class in ptolemy.data.type
The scalar data type: The least upper bound of all the scalar types.
BaseType.ShortType - Class in ptolemy.data.type
The short integer data type.
BaseType.StringType - Class in ptolemy.data.type
The string data type.
BaseType.UnknownType - Class in ptolemy.data.type
The bottom element of the data type lattice.
BaseType.UnsignedByteType - Class in ptolemy.data.type
The unsigned byte data type.
BaseType.UnsizedFixType - Class in ptolemy.data.type
The fix data type.
BaseType.XmlTokenType - Class in ptolemy.data.type
The XmlToken data type.
BaseUnit - Class in ptolemy.data.unit
The base unit of a unit category.
BaseUnit(NamedObj, String) - Constructor for class ptolemy.data.unit.BaseUnit
Construct a base unit with the given name contained by the specified entity.
BasicEdgeHighlighter - Class in ptolemy.vergil.unit
A decorator figure that displays a highlight behind an edge.
BasicEdgeHighlighter() - Constructor for class ptolemy.vergil.unit.BasicEdgeHighlighter
Create a new highlighter with a default paint, "halo", and stroke.
BasicGraphController - Class in ptolemy.vergil.basic
A base class for Ptolemy II graph controllers.
BasicGraphController() - Constructor for class ptolemy.vergil.basic.BasicGraphController
Create a new basic controller.
BasicGraphController.OpenBaseClassAction - Class in ptolemy.vergil.basic
An action that will open the base class of a subclass or the class of an instance.
BasicGraphController.SchematicContextMenuFactory - Class in ptolemy.vergil.basic
Factory for context menus.
BasicGraphController.UnitSolverDialogAction - Class in ptolemy.vergil.basic
An action that will create a UnitSolverDialog.
BasicGraphFrame - Class in ptolemy.vergil.basic
A simple graph view for ptolemy models.
BasicGraphFrame(NamedObj, Tableau) - Constructor for class ptolemy.vergil.basic.BasicGraphFrame
Construct a frame associated with the specified Ptolemy II model or object.
BasicGraphFrame(NamedObj, Tableau, LibraryAttribute) - Constructor for class ptolemy.vergil.basic.BasicGraphFrame
Construct a frame associated with the specified Ptolemy II model.
BasicGraphFrame.CopyAction - Class in ptolemy.vergil.basic
Action to copy the current selection.
BasicGraphFrame.CutAction - Class in ptolemy.vergil.basic
Action to copy and delete the current selection.
BasicGraphFrame.EditPreferencesAction - Class in ptolemy.vergil.basic
Action to edit the preferences.
BasicGraphFrame.ExportImageAction - Class in ptolemy.vergil.basic
Export an image of the model.
BasicGraphFrame.FindAction - Class in ptolemy.vergil.basic
Action to search for text in a model.
BasicGraphFrame.FolderFileFilter - Class in ptolemy.vergil.basic
Accept only folders in a file browser.
BasicGraphFrame.MousePressedLayerAdapter - Class in ptolemy.vergil.basic
A Layer Adapter to handle the mousePressed layer event.
BasicGraphFrame.MoveToBackAction - Class in ptolemy.vergil.basic
Action to move the current selection to the back (which corresponds to first in the ordered list).
BasicGraphFrame.MoveToFrontAction - Class in ptolemy.vergil.basic
Action to move the current selection to the back (which corresponds to first in the ordered list).
BasicGraphFrame.PasteAction - Class in ptolemy.vergil.basic
Paste the current contents of the clipboard into the current model.
BasicGraphFrameExtension - Class in ptolemy.vergil.basic
This class provides default extensions points which are overridden in the Kepler Comad module.
BasicGraphPane - Class in ptolemy.vergil.basic
A simple graph pane that has an associated Ptolemy model and handles getting the background color from the preferences.
BasicGraphPane(GraphController, GraphModel, NamedObj) - Constructor for class ptolemy.vergil.basic.BasicGraphPane
Create a pane that updates the background color on each repaint if there is a preference attribute.
BasicJApplet - Class in ptolemy.gui
Base class for swing applets.
BasicJApplet() - Constructor for class ptolemy.gui.BasicJApplet
 
basicLattice() - Static method in class ptolemy.data.type.TypeLattice
Return the an instance of CPO representing the basic type lattice.
BasicLibraryPane - Class in org.kepler.gui
A simple pane used to display the contents of the library tree.
BasicLibraryPane() - Constructor for class org.kepler.gui.BasicLibraryPane
Construct a new library pane for displaying the tree of actors that can be dragged to the graph editor.
BasicLibraryPane.Factory - Class in org.kepler.gui
A factory that creates the library panel for the editors.
BasicModelErrorHandler - Class in ptolemy.kernel.util
Default model error handler.
BasicModelErrorHandler() - Constructor for class ptolemy.kernel.util.BasicModelErrorHandler
 
BbcpCopier - Class in org.sdm.spa.actors.transport
This class provides methods to copy files across two remote machines using bbcp.
BbcpCopier() - Constructor for class org.sdm.spa.actors.transport.BbcpCopier
 
bbox - Variable in class org.kepler.gis.actor.Crop
Crop to this bounding box.
bbox(String) - Static method in class org.kepler.gis.data.BoundingBoxToken
Create a BoundingBoxToken from a string value.
BCVTBApplication - Class in ptolemy.actor.gui.jnlp
Wrapper class to start up the Building Controls Virtual Test Bench (BCVTB).
BCVTBApplication() - Constructor for class ptolemy.actor.gui.jnlp.BCVTBApplication
 
BeanProperty - Class in org.mlc.swing.layout
This represents a property in the ComponentBuilder.
BeanProperty(String, Class, List<Object>) - Constructor for class org.mlc.swing.layout.BeanProperty
Creates a new instance of BeanProperty
BeanProperty(String, Class) - Constructor for class org.mlc.swing.layout.BeanProperty
 
BeanShell - Class in org.kepler.scriptengine
An actor whose execution is defined by BeanShell Java code.
BeanShell(Workspace) - Constructor for class org.kepler.scriptengine.BeanShell
 
BeanShell(CompositeEntity, String) - Constructor for class org.kepler.scriptengine.BeanShell
 
BEFORE_FIRE - Static variable in class ptolemy.actor.FiringEvent
This type of event is published before a fire method is called.
BEFORE_ITERATE - Static variable in class ptolemy.actor.FiringEvent
This type of event is published before an iterate method is called.
BEFORE_POSTFIRE - Static variable in class ptolemy.actor.FiringEvent
This type of event is published before a postfire method is called.
BEFORE_PREFIRE - Static variable in class ptolemy.actor.FiringEvent
This type of event is published before a prefire method is called.
BEFORE_RW_FIRE - Static variable in class ptolemy.actor.FiringEvent
The type of event published as part of the Kepler sql actor.
beginColumn - Variable in class ptolemy.data.expr.Token
The column number of the first character of this Token.
beginColumn - Variable in class ptolemy.moml.unit.Token
The column number of the first character of this Token.
beginLine - Variable in class ptolemy.data.expr.Token
The line number of the first character of this Token.
beginLine - Variable in class ptolemy.moml.unit.Token
The line number of the first character of this Token.
BeginToken() - Method in class ptolemy.data.expr.SimpleCharStream
Start.
BeginToken() - Method in class ptolemy.moml.unit.SimpleCharStream
Start.
Bernoulli - Class in ptolemy.actor.lib
Produce a random sequence of booleans.
Bernoulli(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Bernoulli
Construct an actor with the given container and name.
beta - Variable in class ptolemy.actor.lib.colt.ColtBeta
Beta.
BGCOLOR - Static variable in class org.kepler.gui.TabManager
Due to slight color change in the background area of a tab this color should be used to set the background color of components inside the tab.
biased - Variable in class ptolemy.domains.sdf.lib.Autocorrelation
If true, the estimate will be biased.
bigDecimalValue() - Method in class ptolemy.math.FixPoint
Return the value of this FixPoint as a BigDecimal number.
bigToDouble(BigInteger) - Static method in class ptolemy.util.DoubleUtilities
Convert a BigInteger to a double using a fast implementation.
binaryCopyURLToFile(URL, File) - Static method in class ptolemy.util.FileUtilities
Copy sourceURL to destinationFile without doing any byte conversion.
BinaryFileReader - Class in org.geon
This actor reads a file or URL and outputs its content as a bytes array.
BinaryFileReader(CompositeEntity, String) - Constructor for class org.geon.BinaryFileReader
Construct an actor with the given container and name.
BinaryFileWriter - Class in org.geon
This actor receives an array of bytes as an input and writes it to a file.
BinaryFileWriter(CompositeEntity, String) - Constructor for class org.geon.BinaryFileWriter
Construct an actor with the given container and name.
binaryReadURLToByteArray(URL) - Static method in class ptolemy.util.FileUtilities
Read a sourceURL without doing any byte conversion.
binCountFactor - Variable in class ptolemy.domains.de.kernel.DEDirector
The factor when adjusting the bin number.
bindingExists(String) - Method in class ptolemy.moml.unit.Bindings
Return true if the binding exists.
Bindings - Class in ptolemy.moml.unit
Represents a set of bindings.
Bindings() - Constructor for class ptolemy.moml.unit.Bindings
Construct Bindings with no members.
Bindings(Vector) - Constructor for class ptolemy.moml.unit.Bindings
Create bindings for a set of nodes in a CompositeEntity.
binOffset - Variable in class ptolemy.actor.lib.gui.HistogramPlotter
The offset for bins of the histogram.
binPath - Variable in class org.kepler.actor.job.GenericJobLauncher
The path to the job manager commands on the target machines.
binPath - Variable in class org.kepler.actor.job.GenericJobReconnect
The path to the job manager commands on the target machines.
binPath - Variable in class org.kepler.actor.job.JobManager
The path to the job manager commands on the target machines.
binWidth - Variable in class ptolemy.actor.lib.gui.HistogramPlotter
The width of the bin of the histogram.
BITS_PER_SAMPLE - Static variable in class ptolemy.media.javasound.LiveSoundEvent
The value indicates a bits per channel change event.
BitsToInt - Class in ptolemy.domains.sdf.lib
This actor converts a sequence of BooleanTokens into a single IntToken.
BitsToInt(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.BitsToInt
Construct an actor with the given container and name.
BITWISE_NOT - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
bitwiseAnd(Token) - Method in interface ptolemy.data.BitwiseOperationToken
Returns a token representing the bitwise AND of this token and the given token.
bitwiseAnd() - Method in class ptolemy.data.expr.PtParser
 
bitwiseAnd(Token) - Method in class ptolemy.data.ScalarToken
Returns a token representing the bitwise AND of this token and the given token.
bitwiseAnd(int[], int) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array that is the formed by bitwise ANDing z with each element of the input array (array[i] & z).
bitwiseAnd(int[], int[]) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array that is the element-by-element bitwise AND of the two input arrays (array1[i] & array2[i]).
bitwiseAnd(int[][], int) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new matrix that is the formed by bitwise ANDing z with each element of the input matrix (matrix[i][j] & z).
bitwiseAnd(int[][], int[][]) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new array that is the element-by-element bitwise AND of the two input matrices (matrix1[i][j] & matrix2[i][j]).
bitwiseAnd(long[], long) - Static method in class ptolemy.math.LongArrayMath
Return a new array that is the formed by bitwise ANDing z with each element of the input array (array[i] & z).
bitwiseAnd(long[], long[]) - Static method in class ptolemy.math.LongArrayMath
Return a new array that is the element-by-element bitwise AND of the two input arrays (array1[i] & array2[i]).
bitwiseAnd(long[][], long) - Static method in class ptolemy.math.LongMatrixMath
Return a new matrix that is the formed by bitwise ANDing z with each element of the input matrix (matrix[i][j] & z).
bitwiseAnd(long[][], long[][]) - Static method in class ptolemy.math.LongMatrixMath
Return a new array that is the element-by-element bitwise AND of the two input matrices (matrix1[i][j] & matrix2[i][j]).
bitwiseComplement(int[]) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array that is the element-by-element bitwise complement of the input array (~array[i]).
bitwiseComplement(int[][]) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new array that formed by the bitwise complement of each element in the input matrix (~matrix[i][j]).
bitwiseComplement(long[]) - Static method in class ptolemy.math.LongArrayMath
Return a new array that is the element-by-element bitwise complement of the input array (~array[i]).
bitwiseComplement(long[][]) - Static method in class ptolemy.math.LongMatrixMath
Return a new array that formed by the bitwise complement of each element in the input matrix (~matrix[i][j]).
bitwiseNot() - Method in interface ptolemy.data.BitwiseOperationToken
Returns a token representing the bitwise NOT of this token.
bitwiseNot() - Method in class ptolemy.data.ScalarToken
Returns a token representing the bitwise NOT of this token.
BitwiseOperationToken - Interface in ptolemy.data
The operations that can be performed on tokens that have bitwise operations.
bitwiseOr(Token) - Method in interface ptolemy.data.BitwiseOperationToken
Returns a token representing the bitwise OR of this token and the given token.
bitwiseOr() - Method in class ptolemy.data.expr.PtParser
 
bitwiseOr(Token) - Method in class ptolemy.data.ScalarToken
Returns a token representing the bitwise OR of this token and the given token.
bitwiseOr(int[], int) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array that is the formed by bitwise ORing z with each element of the input array (array[i] | z).
bitwiseOr(int[], int[]) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array that is the element-by-element bitwise OR of the two input arrays (array1[i] | array2[i]).
bitwiseOr(int[][], int) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new matrix that is the formed by bitwise ORing z with each element of the input matrix (matrix[i][j] | z).
bitwiseOr(int[][], int[][]) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new array that is the element-by-element bitwise OR of the two input matrices (matrix1[i][j] | matrix2[i][j]).
bitwiseOr(long[], long) - Static method in class ptolemy.math.LongArrayMath
Return a new array that is the formed by bitwise ORing z with each element of the input array (array[i] | z).
bitwiseOr(long[], long[]) - Static method in class ptolemy.math.LongArrayMath
Return a new array that is the element-by-element bitwise OR of the two input arrays (array1[i] | array2[i]).
bitwiseOr(long[][], long) - Static method in class ptolemy.math.LongMatrixMath
Return a new matrix that is the formed by bitwise ORing z with each element of the input matrix (matrix[i][j] | z).
bitwiseOr(long[][], long[][]) - Static method in class ptolemy.math.LongMatrixMath
Return a new array that is the element-by-element bitwise OR of the two input matrices (matrix1[i][j] | matrix2[i][j]).
bitwiseXor(Token) - Method in interface ptolemy.data.BitwiseOperationToken
Returns a token representing the bitwise XOR of this token and the given token.
bitwiseXor() - Method in class ptolemy.data.expr.PtParser
 
bitwiseXor(Token) - Method in class ptolemy.data.ScalarToken
Returns a token representing the bitwise XOR of this token and the given token.
bitwiseXor(int[], int) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array that is the formed by bitwise XORing z with each element of the input array (array[i] ^ z).
bitwiseXor(int[], int[]) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array that is the element-by-element bitwise XOR of the two input arrays (array1[i] ^ array2[i]).
bitwiseXor(int[][], int) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new matrix that is the formed by bitwise XORing z with each element of the input matrix (matrix[i][j] ^ z).
bitwiseXor(int[][], int[][]) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new array that is the element-by-element bitwise XOR of the two input matrices (matrix1[i][j] & matrix2[i][j]).
bitwiseXor(long[], long) - Static method in class ptolemy.math.LongArrayMath
Return a new array that is the formed by bitwise XORing z with each element of the input array (array[i] ^ z).
bitwiseXor(long[], long[]) - Static method in class ptolemy.math.LongArrayMath
Return a new array that is the element-by-element bitwise XOR of the two input arrays (array1[i] ^ array2[i]).
bitwiseXor(long[][], long) - Static method in class ptolemy.math.LongMatrixMath
Return a new matrix that is the formed by bitwise XORing z with each element of the input matrix (matrix[i][j] ^ z).
bitwiseXor(long[][], long[][]) - Static method in class ptolemy.math.LongMatrixMath
Return a new array that is the element-by-element bitwise XOR of the two input matrices (matrix1[i][j] & matrix2[i][j]).
BLACK - Static variable in interface org.kepler.dataproxy.datasource.DataSourceInterface
 
BlastTabularResult - Class in org.kepler.bio.util
This class is for the lines in blast tabular result.
BlastTabularResult(String) - Constructor for class org.kepler.bio.util.BlastTabularResult
 
BlastTabularResultMerge - Class in org.kepler.bio.actor
This actor will merge blast tabular result.
BlastTabularResultMerge(CompositeEntity, String) - Constructor for class org.kepler.bio.actor.BlastTabularResultMerge
Construct a BlastTabularResultMerge with the given container and name.
BLOB - Static variable in class org.kepler.util.sql.Column
A BLOB column.
blockCount - Variable in class ptolemy.domains.sdf.lib.vq.HTVQEncode
The number of blocks to be encoded during each firing.
blockCount - Variable in class ptolemy.domains.sdf.lib.vq.VQDecode
The number of blocks to be decoded during each firing.
BLOCKED_ON_DELAY - Static variable in class ptolemy.domains.pn.kernel.event.PNProcessEvent
A process is blocked on a delay.
BLOCKED_ON_MUTATION - Static variable in class ptolemy.domains.pn.kernel.event.PNProcessEvent
A process is blocked on a mutation.
BLOCKED_ON_READ - Static variable in class ptolemy.domains.pn.kernel.event.PNProcessEvent
A process is blocked on a read.
BLOCKED_ON_WRITE - Static variable in class ptolemy.domains.pn.kernel.event.PNProcessEvent
A process is blocked on a write.
blockHeight - Variable in class ptolemy.domains.sdf.lib.vq.HTVQEncode
The width, in pixels, of the block to encode.
blockHeight - Variable in class ptolemy.domains.sdf.lib.vq.VQDecode
The width, in integer pixels, of the block to decode.
blockSize - Variable in class ptolemy.actor.lib.Commutator
The number of tokens read from each input channel on each firing.
blockSize - Variable in class ptolemy.actor.lib.Distributor
The number of tokens produced on each output channel on each firing.
blockSize - Variable in class ptolemy.domains.sdf.lib.CountTrues
The number of input tokens to read before outputting a count.
blockSize - Variable in class ptolemy.domains.sdf.lib.Repeat
The number of tokens in a block.
blockSize - Variable in class ptolemy.domains.sdf.lib.VariableFIR
The number of inputs that use each each coefficient set is the value of this parameter multiplied by the value of the decimation parameter.
blockSize - Variable in class ptolemy.domains.sdf.lib.VariableLattice
The number of inputs that use each each coefficient set.
blockSize - Variable in class ptolemy.domains.sdf.lib.VariableRecursiveLattice
The number of inputs that use each each coefficient set.
blockTimeoutParam - Variable in class org.kepler.data.datasource.dataturbine.DataTurbine
The amount of time (ms) to wait for data to become available.
blockWidth - Variable in class ptolemy.domains.sdf.lib.vq.HTVQEncode
The width, in pixels, of the block to encode.
blockWidth - Variable in class ptolemy.domains.sdf.lib.vq.VQDecode
The width, in integer pixels, of the block to decode.
BODY - Static variable in class ptolemy.vergil.basic.export.web.WebElement
A special constant indicating that the <body/> element should be the parent.
bold - Variable in class ptolemy.vergil.basic.export.web.Title
A boolean indicating whether the font should be bold.
bold - Variable in class ptolemy.vergil.kernel.attributes.AbstractTextAttribute
A boolean indicating whether the font should be bold.
BOOL_NOT - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
BOOLEAN - Static variable in class org.ecoinformatics.seek.dataquery.DBTablesGenerator
 
BOOLEAN - Static variable in class org.kepler.util.sql.Column
A boolean column.
BOOLEAN - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
BOOLEAN - Static variable in class ptolemy.data.type.BaseType
The boolean data type.
BOOLEAN_MATRIX - Static variable in class ptolemy.data.type.BaseType
The boolean matrix data type.
BooleanAccumulator - Class in org.resurgence.actor
This actor reads a sequence of boolean values and writes one boolean value from their combination.
BooleanAccumulator(CompositeEntity, String) - Constructor for class org.resurgence.actor.BooleanAccumulator
Construct a BooleanAccumulator with the given container and name.
BooleanDependency - Class in ptolemy.actor.util
This dependency represents causal relationships that are either present or not.
BooleanDependency(boolean) - Constructor for class ptolemy.actor.util.BooleanDependency
Construct a dependency with the specified value.
booleanMatrix() - Method in class ptolemy.data.BooleanMatrixToken
Return a copy of the contained 2-D matrix.
booleanMatrix() - Method in class ptolemy.data.MatrixToken
Return the content of this token as a 2-D boolean matrix.
BooleanMatrixToken - Class in ptolemy.data
A token that contains a 2-D boolean matrix.
BooleanMatrixToken() - Constructor for class ptolemy.data.BooleanMatrixToken
Construct an BooleanMatrixToken with a one by one matrix.
BooleanMatrixToken(boolean[][]) - Constructor for class ptolemy.data.BooleanMatrixToken
Construct a BooleanMatrixToken with the specified 2-D matrix.
BooleanMatrixToken(String) - Constructor for class ptolemy.data.BooleanMatrixToken
Construct a BooleanMatrixToken from the specified string.
BooleanMatrixToken(Token[], int, int) - Constructor for class ptolemy.data.BooleanMatrixToken
Construct an BooleanMatrixToken from the specified array of tokens.
BooleanMatrixType() - Constructor for class ptolemy.data.type.MatrixType.BooleanMatrixType
 
BooleanMultiplexor - Class in ptolemy.actor.lib
A multiplexor with a boolean-valued select control signal.
BooleanMultiplexor(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.BooleanMultiplexor
Construct an actor in the specified container with the specified name.
booleans - Variable in class org.resurgence.actor.BooleanAccumulator
The input port, which contains the booleans.
BooleanSelect - Class in ptolemy.actor.lib
Conditionally merge the streams at two input ports depending on the value of the boolean control input.
BooleanSelect(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.BooleanSelect
Construct an actor in the specified container with the specified name.
BooleanSwitch - Class in ptolemy.actor.lib
Split an input stream onto two output ports depending on a boolean control input.
BooleanSwitch(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.BooleanSwitch
Construct an actor in the specified container with the specified name.
BooleanToAnything - Class in ptolemy.actor.lib.conversions
This actor converts a boolean input token into any data type.
BooleanToAnything(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.conversions.BooleanToAnything
Construct an actor with the given container and name.
BooleanToken - Class in ptolemy.data
A token that contains a boolean variable.
BooleanToken() - Constructor for class ptolemy.data.BooleanToken
Construct a token with value false.
BooleanToken(boolean) - Constructor for class ptolemy.data.BooleanToken
Construct a token with the specified value.
BooleanToken(String) - Constructor for class ptolemy.data.BooleanToken
Construct a token with the specified string.
booleanValue() - Method in class ptolemy.data.BooleanToken
Return the value as a boolean.
booleanValue(String) - Method in class ptolemy.gui.Query
Deprecated.
Use getBooleanValue(String name) instead.
bootstrap(String) - Method in class org.kepler.objectmanager.repository.EcogridRepositoryBootstrap
upload all kar files in the cache to the repository. this can be called from main()
BootstrapSampleDelay - Class in ptolemy.domains.sdf.lib
Record an initial token and then output that initial token during initialize(), then pass through.
BootstrapSampleDelay(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.BootstrapSampleDelay
Construct an actor with the given container and name.
Borders - Class in com.jgoodies.forms.factories
Provides constants and factory methods for Borders that use instances of ConstantSize to define the margins.
Borders.EmptyBorder - Class in com.jgoodies.forms.factories
An empty border that uses 4 instances of ConstantSize to define the gaps on all sides.
bottom() - Method in class com.jgoodies.forms.factories.Borders.EmptyBorder
Returns this border's bottom size.
BOTTOM - Static variable in class com.jgoodies.forms.layout.CellConstraints
Put the component in the bottom.
BOTTOM - Static variable in class com.jgoodies.forms.layout.RowSpec
By default put the components in the bottom.
bottom - Variable in class org.kepler.gis.actor.SplitBoundingBox
Deprecated.
The latitude of the bottom of the bounding box.
BOTTOM - Static variable in class org.mlc.swing.layout.LayoutConstraintsManager
 
bottom - Variable in class ptolemy.actor.lib.Limiter
The bottom of the limiting range.
BOTTOM - Static variable in class ptolemy.data.type.FixType
The bottom fix type.
BOTTOM - Static variable in class ptolemy.data.type.ObjectType
The bottom element among all ObjectTypes.
bottom() - Method in interface ptolemy.graph.CPO
Return the bottom element of this CPO.
bottom() - Method in class ptolemy.graph.DirectedAcyclicGraph
Return the bottom element of this CPO.
BottomClass() - Constructor for class ptolemy.data.type.ObjectType.BottomClass
 
bottomPadding - Static variable in class org.geon.TernaryDiagram
 
bottomVariables() - Method in class ptolemy.graph.InequalitySolver
Return an Iterator of the variables whose current values are the bottom of the underlying CPO.
BoundaryDetector - Class in ptolemy.actor.process
A BoundaryDetector determines the topological relationship of a Receiver with respect to boundary ports.
BoundaryDetector(Receiver) - Constructor for class ptolemy.actor.process.BoundaryDetector
Construct a BoundaryDetector with the specified containing receiver.
bounded(Size, Size, Size) - Static method in class com.jgoodies.forms.layout.Sizes
Creates and returns a BoundedSize for the given basis using the specified lower and upper bounds.
BOUNDING_BOX - Static variable in class org.kepler.gis.data.BoundingBoxToken
The bounding box type.
BoundingBoxToken - Class in org.kepler.gis.data
Token containing a GIS bounding box.
BoundingBoxToken(String) - Constructor for class org.kepler.gis.data.BoundingBoxToken
Create a new BoundingBoxToken from a string value.
BoundingBoxToken(ReferencedEnvelope) - Constructor for class org.kepler.gis.data.BoundingBoxToken
Create a new BoundingBoxToken with an evelope.
BoundingBoxToken.BoundingBoxType - Class in org.kepler.gis.data
The Type for the BoundingBoxToken.
BoundingBoxToVector - Class in org.kepler.gis.actor.conversions
Convert a bounding box to a vector as a polygon.
BoundingBoxToVector(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.conversions.BoundingBoxToVector
Create a new BoundingBoxToVector in a container with a specific name.
boundingBoxValue() - Method in class org.kepler.gis.data.BoundingBoxToken
Get the bounding box.
BoundingBoxValues - Class in org.kepler.gis.actor.bbox
Get the max and min values for a bounding box.
BoundingBoxValues(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.bbox.BoundingBoxValues
 
boxColor - Variable in class ptolemy.vergil.icon.BoxedValueIcon
Color of the box.
boxColor - Variable in class ptolemy.vergil.icon.TableIcon
Color of the box.
BoxedValueIcon - Class in ptolemy.vergil.icon
An icon that displays the value of an attribute of the container in a box that resizes according to the width of the attribute value.
BoxedValueIcon(NamedObj, String) - Constructor for class ptolemy.vergil.icon.BoxedValueIcon
Create a new icon with the given name in the given container.
BoxedValuesIcon - Class in ptolemy.vergil.icon
This icon displays the value of all visible attributes of class Settable contained by the container of this icon.
BoxedValuesIcon(NamedObj, String) - Constructor for class ptolemy.vergil.icon.BoxedValuesIcon
Create a new icon with the given name in the given container.
Branch - Class in ptolemy.actor.process
A Branch transfers tokens through a channel that crosses a composite actor boundary.
Branch(BranchController) - Constructor for class ptolemy.actor.process.Branch
Deprecated.
Use this constructor for testing purposes only.
Branch(ProcessReceiver, ProcessReceiver, BranchController) - Constructor for class ptolemy.actor.process.Branch
Construct a branch object with a producer receiver, a consumer receiver and a branch controller.
BranchController - Class in ptolemy.actor.process
A BranchController manages the execution of a set of branch objects by monitoring whether the branches have blocked.
BranchController(CompositeActor) - Constructor for class ptolemy.actor.process.BranchController
Construct a branch controller in the specified composite actor container.
branchFinished - Variable in class org.sdm.spa.EnumItemTriggered
 
BREAK_THRESHOLD - Static variable in class ptolemy.vergil.basic.RelativeLocation
The maximal distance of the relative location.
BreakCausalityInterface - Class in ptolemy.actor.util
This class provides a causality interface where no output port depends on any input port.
BreakCausalityInterface(Actor, Dependency) - Constructor for class ptolemy.actor.util.BreakCausalityInterface
Construct a causality interface for the specified actor.
BreakpointConfigurer - Class in ptolemy.vergil.debugger
A GUI widget for configuring breakpoints.
BreakpointConfigurer(Entity, BasicGraphController) - Constructor for class ptolemy.vergil.debugger.BreakpointConfigurer
Construct a breakpoint configurer for the specified entity.
BreakpointConfigurerDialog - Class in ptolemy.vergil.debugger
A top-level dialog window for configuring the breakpoints of an entity.
BreakpointConfigurerDialog(Frame, Entity, BasicGraphController) - Constructor for class ptolemy.vergil.debugger.BreakpointConfigurerDialog
Construct a dialog with the specified owner and target.
BreakpointDialogFactory - Class in ptolemy.vergil.debugger
A factory that creates a dialog box to configure breakpoints for the actor selected.
BreakpointDialogFactory(BasicGraphController) - Constructor for class ptolemy.vergil.debugger.BreakpointDialogFactory
Create factory.
bringToFront() - Method in interface ptolemy.actor.lib.gui.PlotterBaseInterface
Bring the plotter frame to the front.
bringToFront() - Method in class ptolemy.actor.lib.gui.PlotterBaseJavaSE
Show and then bing the frame to the front.
broadcast(Token) - Method in class ptolemy.actor.ConstantPublisherPort
Override the base class to replace the specified token with the value of constantValue.
broadcast(Token[], int) - Method in class ptolemy.actor.ConstantPublisherPort
Override the base class to replace the specified tokens with the value of constantValue.
broadcast(Token) - Method in class ptolemy.actor.IOPort
Send a token to all connected receivers.
broadcast(Token[], int) - Method in class ptolemy.actor.IOPort
Send the specified portion of a token array to all receivers connected to this port.
broadcast(Token) - Method in class ptolemy.actor.TypedIOPort
Send a token to all connected receivers.
broadcast(Token[], int) - Method in class ptolemy.actor.TypedIOPort
Send the specified portion of a token array to all receivers connected to this port.
broadcastClear() - Method in class ptolemy.actor.IOPort
Set all receivers connected on the outside to have no tokens.
broadcastStoredStateChangeEvent() - Method in interface org.kepler.gui.state.StoreStateChangeEvent
Broadcast the stored StateChangeEvent
BrowserDisplay - Class in org.geon
This actor displays a file or a URL using the BrowserLauncher class.
BrowserDisplay(CompositeEntity, String) - Constructor for class org.geon.BrowserDisplay
Construct an actor with the given container and name.
BrowserDisplay.BareBonesBrowserLaunch - Class in org.geon
 
BrowserDisplay.LaunchBrowser - Class in org.geon
Launch the default browser from within java.
BrowserEffigy - Class in ptolemy.actor.gui
An effigy for a web browser.
BrowserEffigy(Workspace) - Constructor for class ptolemy.actor.gui.BrowserEffigy
Create a new effigy in the specified workspace with an empty string for its name.
BrowserEffigy(CompositeEntity, String) - Constructor for class ptolemy.actor.gui.BrowserEffigy
Create a new effigy in the given directory with the given name.
BrowserEffigy.Factory - Class in ptolemy.actor.gui
A factory for creating new effigies.
BrowserLauncher() - Constructor for class org.kepler.gui.WelcomeScreen.BrowserLauncher
 
BrowserLauncher - Class in ptolemy.actor.gui
BrowserLauncher is a class that provides one static method, openURL, which opens the default web browser for the current user of the system to the given URL.
BrowserTableau - Class in ptolemy.actor.gui
A tableau representing a web browser window.
BrowserTableau(BrowserEffigy, String) - Constructor for class ptolemy.actor.gui.BrowserTableau
Construct a new tableau for the model represented by the given effigy.
BrowserTableau.Factory - Class in ptolemy.actor.gui
A factory that creates web browser tableaux for Ptolemy models.
BrowserUI - Class in org.sdm.spa
 
BrowserUI(CompositeEntity, String) - Constructor for class org.sdm.spa.BrowserUI
Construct a BrowserUI actor with the given container and name.
BrowserUIServer - Class in org.sdm.spa
 
BrowserUIServer() - Constructor for class org.sdm.spa.BrowserUIServer
 
bufcolumn - Variable in class ptolemy.data.expr.SimpleCharStream
 
bufcolumn - Variable in class ptolemy.moml.unit.SimpleCharStream
 
buffer - Variable in class ptolemy.data.expr.SimpleCharStream
 
buffer - Variable in class ptolemy.moml.unit.SimpleCharStream
 
buffer - Variable in class ptolemy.util.StringBufferExec
The StringBuffer to which the output is appended.
BUFFER_SIZE - Static variable in class ptolemy.media.javasound.LiveSoundEvent
The value indicates a buffer size change event.
BufferedDataCacheObject - Class in org.kepler.objectmanager.cache
 
BufferedDataCacheObject() - Constructor for class org.kepler.objectmanager.cache.BufferedDataCacheObject
 
bufferFileName - Variable in class org.ecoinformatics.seek.gis.grass.GISBufferActor
 
bufferFileResult - Variable in class org.ecoinformatics.seek.gis.grass.GISBufferActor
 
BufferingProfile - Interface in ptolemy.domains.sdf.optimize
Class comments BufferingProfile is an interface which when implemented by SDF actors Lets the OptimizingSDFDirector choose from different firings with different properties For now there are two firing modes define, one where the actor may assume it has exclusive access to the information encapsulated by the input tokens.
BufferingProfileFiring - Class in ptolemy.domains.sdf.optimize
Class comments BufferingProfileFiring is a subclass of Firing.
BufferingProfileFiring(Actor, boolean) - Constructor for class ptolemy.domains.sdf.optimize.BufferingProfileFiring
Construct an instance representing a firing of the given actor in the given mode, shared or exclusive.
bufline - Variable in class ptolemy.data.expr.SimpleCharStream
 
bufline - Variable in class ptolemy.moml.unit.SimpleCharStream
 
bufpos - Variable in class ptolemy.data.expr.SimpleCharStream
Position in buffer.
bufpos - Variable in class ptolemy.moml.unit.SimpleCharStream
Position in buffer.
BUILD_ERROR - Static variable in class org.ecoinformatics.seek.querybuilder.DBQueryDef
A generic error during parsing and building
BUILD_OK - Static variable in class org.ecoinformatics.seek.querybuilder.DBQueryDef
The query was built ok with no errors
BUILD_TOO_COMPLEX_JOINS - Static variable in class org.ecoinformatics.seek.querybuilder.DBQueryDef
Was unable to convert a set of complex ORs to a standard format
BUILD_TOO_COMPLEX_WHERE - Static variable in class org.ecoinformatics.seek.querybuilder.DBQueryDef
More than likely the where clause had a mix of ANDs and ORs
build_xml_ForLocalSource(String, String[], String) - Method in class org.sdm.spa.actors.transport.SrmliteCopier
 
buildAccessDocument(KeplerLSID) - Static method in class org.kepler.kar.UploadToRepository
uploads a document as the kepler user with public read permissions
buildAccessDocument(KeplerLSID, boolean) - Static method in class org.kepler.kar.UploadToRepository
 
buildAccessDocument(KeplerLSID, String, boolean) - Static method in class org.kepler.kar.UploadToRepository
build an access document that gives 'public' read access to the inserted documents.
buildAccessDocument(KeplerLSID) - Static method in class org.kepler.provenance.kar.UploadKarToRepositoryNoGUI
uploads a document as the kepler user with public read permissions
buildAccessDocument(KeplerLSID, boolean) - Static method in class org.kepler.provenance.kar.UploadKarToRepositoryNoGUI
 
buildAccessDocument(KeplerLSID, String, boolean) - Static method in class org.kepler.provenance.kar.UploadKarToRepositoryNoGUI
build an access document that gives 'public' read access to the inserted documents.
buildAddRemoveBar(JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a filled button bar with Add and Remove.
buildAddRemoveLeftBar(JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a left aligned button bar with Add and Remove.
buildAddRemovePropertiesBar(JButton, JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a filled button bar with Add, Remove, and Properties.
buildAddRemovePropertiesLeftBar(JButton, JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a left aligned button bar with Add, Remove, and Properties.
buildAddRemovePropertiesRightBar(JButton, JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a right aligned button bar with Add, Remove, and Properties.
buildAddRemoveRightBar(JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a right aligned button bar with Add and Remove.
buildCenteredBar(JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a centered bar with one button.
buildCenteredBar(JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a centered bar with two buttons.
buildCenteredBar(JButton, JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a centered bar with three buttons.
buildCenteredBar(JButton, JButton, JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a centered bar with four buttons.
buildCenteredBar(JButton, JButton, JButton, JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a centered bar with five buttons.
buildCenteredBar(JButton[]) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a centered button bar with the given buttons.
buildCloseBar(JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a button bar with Close.
buildCloseHelpBar(JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a button bar with Close and Help.
buildCommands(ExecuteCommands) - Method in class org.kepler.gui.KeplerDocApplicationSpecializer
Set up the commands necessary to build the documentation.
buildCommands(ExecuteCommands) - Method in interface ptolemy.vergil.actor.DocApplicationSpecializer
Set up the commands necessary to build the documentation.
buildDefaultActorLibrary() - Method in class org.ecoinformatics.seek.sms.AnnotationEngine
Constructs the default actor library that is loaded, e.g., when Kepler is started in graph mode.
buildDocs() - Method in class ptolemy.vergil.actor.DocBuilder
Build the Java class and Actor documentation.
buildEmptyLibrary() - Method in class org.kepler.objectmanager.library.LibraryManager
Create an empty library.
buildFromQueryDef(DBQueryDef) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelAdv
Builds UI from the Query Definition Object The Advance Model just tracks what is being displayed
buildFromQueryDef(DBQueryDef, StringBuffer, boolean) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelStd
Build UI from the Query Definition Object
buildFromQueryDef(DBQueryDef) - Method in interface org.ecoinformatics.seek.querybuilder.QBBuilderInterface
Build UI from the Query Definition Object
buildFromQueryDef(DBQueryDef) - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneAdvanced
Build UI from the Query Definition Object
buildFromQueryDef(DBQueryDef) - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneIntermediate
Build UI from the Query Definition Object
buildFromQueryDef(DBQueryDef) - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
Build UI from the Query Definition Object
buildFromWhereObj(DBWhereIFace) - Method in class org.ecoinformatics.seek.querybuilder.DBWhereModel
Build it from the where object
buildGrowingBar(JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a filled bar with one button.
buildGrowingBar(JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a filled button bar with two buttons.
buildGrowingBar(JButton, JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a filled bar with three buttons.
buildGrowingBar(JButton, JButton, JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a filled bar with four buttons.
buildGrowingBar(JButton, JButton, JButton, JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a filled bar with five buttons.
buildGrowingBar(JButton[]) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a button bar with the given buttons.
buildHelpBar(JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a right aligned bar with help and one button.
buildHelpBar(JButton, JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a right aligned bar with help and two buttons.
buildHelpBar(JButton, JButton, JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a right aligned bar with help and three buttons.
buildHelpBar(JButton, JButton, JButton, JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a right aligned bar with help and four buttons.
buildHelpBar(JButton, JButton[]) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a right aligned bar with help and other buttons.
buildHelpCloseBar(JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a button bar with Help and Close.
buildHelpOKBar(JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a button bar with Help and OK.
buildHelpOKCancelApplyBar(JButton, JButton, JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a button bar with Help, OK, Cancel and Apply.
buildHelpOKCancelBar(JButton, JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a button bar with Help, OK and Cancel.
buildKARXML(String, String, String, boolean, boolean, boolean, boolean) - Static method in class org.kepler.loader.util.UpdateActorTreeFiles
Create XML files for actor KARs.
buildLeftAlignedBar(JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a left aligned bar with one button.
buildLeftAlignedBar(JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a left aligned bar with two buttons.
buildLeftAlignedBar(JButton, JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a left aligned bar with three buttons.
buildLeftAlignedBar(JButton, JButton, JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a left aligned bar with four buttons.
buildLeftAlignedBar(JButton, JButton, JButton, JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a left aligned bar with five buttons.
buildLeftAlignedBar(JButton[]) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a left aligned button bar with the given buttons.
buildLeftAlignedBar(JButton[], boolean) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a left aligned button bar with the given buttons.
buildLibrary(Workspace) - Method in class org.kepler.moml.KARLibraryBuilder
Build the library.
buildLibrary() - Method in class org.kepler.objectmanager.library.LibraryManager
This method will synchronize the cache with local repositories.
buildLibrary(Workspace) - Method in class ptolemy.moml.LibraryBuilder
Build the library.
buildLibrary(Workspace) - Method in class ptolemy.moml.test.TestLibraryBuilder
Build the library.
buildMetaDataTokens(BaseType) - Static method in class org.kepler.dataproxy.datasource.opendap.AttTypeMapper
 
buildMetaDataTypes(BaseType) - Static method in class org.kepler.dataproxy.datasource.opendap.AttTypeMapper
 
buildModuleDependenciesString() - Static method in class org.kepler.kar.ModuleDependencyUtil
 
buildOKBar(JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a button bar with OK.
buildOKCancelApplyBar(JButton, JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a button bar with OK, Cancel and Apply.
buildOKCancelApplyHelpBar(JButton, JButton, JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a button bar with OK, Cancel, Apply and Help.
buildOKCancelBar(JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a button bar with OK and Cancel.
buildOKCancelHelpBar(JButton, JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a button bar with OK, Cancel, and Help.
buildOKHelpBar(JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a button bar with OK and Help.
buildOntologyTree(NamedOntModel) - Method in class org.kepler.tagging.gui.OntologyEditorUI
Build the ontology tree from an ontology model
buildRightAlignedBar(JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a right aligned bar with one button.
buildRightAlignedBar(JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a right aligned bar with two buttons.
buildRightAlignedBar(JButton, JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a right aligned bar with three buttons.
buildRightAlignedBar(JButton, JButton, JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a right aligned bar with four buttons.
buildRightAlignedBar(JButton, JButton, JButton, JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a right aligned bar with five buttons.
buildRightAlignedBar(JButton[]) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a right aligned button bar with the given buttons.
buildRightAlignedBar(JButton[], boolean) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a right aligned button bar with the given buttons.
buildRunKARQueryDoc() - Static method in class org.kepler.util.WorkflowRunUtil
Deprecated. 
buildSCPRemoteDestinationCommand(String, int, String, boolean) - Method in class org.sdm.spa.actors.transport.ScpCopier
 
buildSftpCommand(ConnectionDetails, String, ConnectionDetails, String, boolean, SftpExec, String) - Method in class org.sdm.spa.actors.transport.SftpCopier
Anand: Create a batch file for a file or directory and give that to sftp to perform copy This function creates batch file, and builds sftp copy command and returns it to calling function.
buildSftpWildcardBatch(ConnectionDetails, String, ConnectionDetails, String, boolean, SftpExec, String) - Method in class org.sdm.spa.actors.transport.SftpCopier
Anand: Create a command for remote to remote SFTP copy.
buildWizardBar(JButton, JButton, JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a wizard button bar with: Back, Next, Finish, Cancel.
buildWizardBar(JButton, JButton, JButton, JButton, JButton) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a wizard button bar with: Help and Back, Next, Finish, Cancel.
buildWizardBar(JButton, JButton, JButton[]) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a wizard button bar that consists of the back and next buttons, and some right aligned buttons.
buildWizardBar(JButton[], JButton, JButton, JButton[]) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a wizard button bar.
buildWizardBar(JButton[], JButton, JButton, JButton, JButton[]) - Static method in class com.jgoodies.forms.factories.ButtonBarFactory
Builds and returns a wizard button bar.
buildWorkflowRunPiecesQueryDoc() - Static method in class org.kepler.util.WorkflowRunUtil
Create query document that for all karXmls that contain a WorkflowRun, will return KAR filename, KAR LSID, KAR filesize, karEntry types, and a subset of properties that includes all WorkflowRun properties.
buildWorkflowRunQueryDocO() - Static method in class org.kepler.util.WorkflowRunUtil
Deprecated.
unused.
buildXMLs(String[]) - Static method in class org.kepler.loader.util.UpdateActorTreeFiles
Create XML files for a list of source files.
BusAssembler - Class in ptolemy.actor.lib
Aggregate all input relation channels into one output "bus" relation.
BusAssembler(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.BusAssembler
Construct a BusAssembler with the given container and name.
BusDisassembler - Class in ptolemy.actor.lib
Split the input bus relation into individual (possibly bus) output port relations.
BusDisassembler(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.BusDisassembler
Construct a BusDisassembler with the given container and name.
Butterfly - Class in ptolemy.domains.sdf.demo.Butterfly
This class defines a Ptolemy II model that traces an elaborate curve called the butterfly curve.
Butterfly(Workspace) - Constructor for class ptolemy.domains.sdf.demo.Butterfly.Butterfly
Construct a Butterfly with a name and a container.
Button - Class in ptolemy.actor.gui.properties
A GUI property that encloses a JButton component.
Button(NamedObj, String) - Constructor for class ptolemy.actor.gui.properties.Button
Construct a GUI property with the given name contained by the specified entity.
BUTTON_BAR_GAP_BORDER - Static variable in class com.jgoodies.forms.factories.Borders
A standardized Border that describes the gap between a component and a button bar in its bottom.
BUTTON_COLSPEC - Static variable in class com.jgoodies.forms.factories.FormFactory
Describes a logical horizontal column for a fixed size button.
ButtonBarBuilder - Class in com.jgoodies.forms.builder
A non-visual builder that assists you in building consistent button bars that comply with popular UI style guides.
ButtonBarBuilder() - Constructor for class com.jgoodies.forms.builder.ButtonBarBuilder
Constructs an instance of ButtonBarBuilder on a JPanel using a preconfigured FormLayout as layout manager.
ButtonBarBuilder(JPanel) - Constructor for class com.jgoodies.forms.builder.ButtonBarBuilder
Constructs an instance of ButtonBarBuilder on the given panel using a preconfigured FormLayout as layout manager.
ButtonBarComponentBuilder - Class in org.mlc.swing.layout
This is the component builder for the JGoodies ButtonBar.
ButtonBarComponentBuilder() - Constructor for class org.mlc.swing.layout.ButtonBarComponentBuilder
Creates a new instance of ButtonBarComponentBuilder
ButtonBarFactory - Class in com.jgoodies.forms.factories
A factory class that consists only of static methods to build frequently used button bars.
BUTTONDIMENSION - Static variable in class org.ecoinformatics.seek.ecogrid.EcogridPreferencesTab
Description of the Field
buttonPressed - Variable in class ptolemy.actor.lib.gui.EventButton
Hidden parameter controlling the visual rendition of the button.
buttonPressed() - Method in class ptolemy.gui.ComponentDialog
Return the label of the button that triggered closing the dialog, or an empty string if none.
BUTTONS - Static variable in class ptolemy.actor.gui.ModelPane
Indicator to include control buttons.
ButtonStackBuilder - Class in com.jgoodies.forms.builder
A non-visual builder that assists you in building consistent button stacks using the FormLayout.
ButtonStackBuilder() - Constructor for class com.jgoodies.forms.builder.ButtonStackBuilder
Constructs an instance of ButtonStackBuilder on a default JPanel using a preconfigured FormLayout as layout manager.
ButtonStackBuilder(JPanel) - Constructor for class com.jgoodies.forms.builder.ButtonStackBuilder
Constructs an instance of ButtonStackBuilder on the given panel using a preconfigured FormLayout as layout manager.
ByteArray - Class in org.kepler.stratosphere.type
A PACT Key/Value for an array of bytes.
ByteArray() - Constructor for class org.kepler.stratosphere.type.ByteArray
Default constructor.
ByteArray(byte[]) - Constructor for class org.kepler.stratosphere.type.ByteArray
Construct a new ByteArrayValue with a byte array.
byteArrayToToken(byte[]) - Static method in class org.kepler.stratosphere.stub.StubUtilities
Convert byte array data to an array of UnsignedByteToken.
byteValue() - Method in class ptolemy.data.ScalarToken
Return the value in the token as a byte.
byteValue() - Method in class ptolemy.data.UnsignedByteToken
Return the value in this token as a byte, modulo 256.

C

C - Variable in class ptolemy.actor.lib.LinearDifferenceEquationSystem
The C matrix in the state-space representation.
C - Variable in class ptolemy.domains.continuous.lib.LinearStateSpace
The C matrix in the state-space representation.
cache(KARFile, KAREntry) - Method in class org.kepler.kar.handlers.ActorMetadataKAREntryHandler
 
cache(KARFile, KAREntry) - Method in class org.kepler.kar.handlers.JARKAREntryHandler
 
cache(KARFile, KAREntry) - Method in class org.kepler.kar.handlers.ModuleTxtKAREntryHandler
This method should return a CacheObject that will be put into the cache.
cache(KARFile, KAREntry) - Method in class org.kepler.kar.handlers.ProvKAREntryHandler
Does nothing.
cache(KARFile, KAREntry) - Method in class org.kepler.kar.handlers.ReportInstanceKAREntryHandler
 
cache(KARFile, KAREntry) - Method in class org.kepler.kar.handlers.ReportLayoutKAREntryHandler
 
cache(KARFile, KAREntry) - Method in class org.kepler.kar.handlers.WorkflowRunEntryHandler
 
cache(KARFile, KAREntry) - Method in interface org.kepler.kar.KAREntryHandler
This method should return a CacheObject that will be put into the cache.
CACHE_BUSY - Static variable in class org.kepler.objectmanager.cache.DataCacheObject
Description of the Field
CACHE_COMPLETE - Static variable in class org.kepler.objectmanager.cache.DataCacheObject
Description of the Field
CACHE_EMPTY - Static variable in class org.kepler.objectmanager.cache.DataCacheObject
Description of the Field
CACHE_ERROR - Static variable in class org.kepler.objectmanager.cache.DataCacheObject
Description of the Field
CACHE_SEMTYPES_TABLE_NAME - Static variable in class org.kepler.objectmanager.cache.CacheManager
 
CacheContent - Class in org.kepler.objectmanager.cache
This class represents one row of the CACHECONTENTTABLE.
CacheContent() - Constructor for class org.kepler.objectmanager.cache.CacheContent
 
CachedMethod - Class in ptolemy.data.expr
An instance of this class represents a method or function that is invoked by the Ptolemy II expression evaluator.
CachedMethod(String, Type[], Method, CachedMethod.ArgumentConversion[], int) - Constructor for class ptolemy.data.expr.CachedMethod
Construct a new CachedMethod.
CachedMethod.ArgumentConversion - Class in ptolemy.data.expr
Class representing an argument conversion.
CachedMethod.ArrayMapCachedMethod - Class in ptolemy.data.expr
A class representing the invocation of a scalar method on an array of elements.
CachedMethod.BaseConvertCachedMethod - Class in ptolemy.data.expr
A cached method that converts the object on which the method is invoked as well as the arguments.
CachedMethod.MatrixMapCachedMethod - Class in ptolemy.data.expr
A class representing the invocation of a scalar method on a matrix of elements.
CachedMethod.TypeArgumentConversion - Class in ptolemy.data.expr
A class representing an argument conversion to another ptolemy type, followed by the given conversion.
CachedSDFScheduler - Class in ptolemy.domains.sdf.kernel
The CachedSDFScheduler extends the SDFScheduler by caching schedules.
CachedSDFScheduler() - Constructor for class ptolemy.domains.sdf.kernel.CachedSDFScheduler
Construct a scheduler with no container(director) in the default workspace, the name of the scheduler is "Scheduler".
CachedSDFScheduler(Workspace) - Constructor for class ptolemy.domains.sdf.kernel.CachedSDFScheduler
Construct a scheduler in the given workspace with the name "Scheduler".
CachedSDFScheduler(Director, String, int) - Constructor for class ptolemy.domains.sdf.kernel.CachedSDFScheduler
Construct a scheduler in the given container with the given name and given cache size.
CachedStrategy - Class in ptolemy.graph.analysis.strategy
A base class for cached analyzers on graphs.
CachedStrategy(Graph) - Constructor for class ptolemy.graph.analysis.strategy.CachedStrategy
No instance of this object can be created as it is abstract.
CacheEvent - Class in org.kepler.objectmanager.cache
Event object for the CacheListener interface. allows the passing of the CacheObject from the ObjectCache to the listening object.
CacheEvent(CacheObjectInterface) - Constructor for class org.kepler.objectmanager.cache.CacheEvent
 
CacheException - Exception in org.kepler.objectmanager.cache
exception that is thrown when a cache error occurs
CacheException(String) - Constructor for exception org.kepler.objectmanager.cache.CacheException
 
CacheException(String, Throwable) - Constructor for exception org.kepler.objectmanager.cache.CacheException
 
cacheKAR(boolean) - Method in class org.kepler.objectmanager.repository.EcogridRepositoryResults
download the kar file and get it ready to be imported into the local system.
cacheKARContents() - Method in class org.kepler.kar.KARFile
This method makes sure that all of the entries of this KARFile are in the Cache.
CacheListener - Interface in org.kepler.objectmanager.cache
interface for CacheListeners. object can listen for cache events by implementing this interface and adding a CacheListener to the ObjectCache
CacheManager - Class in org.kepler.objectmanager.cache
This class represents a disk cache of CacheObjects.
CacheManager() - Constructor for class org.kepler.objectmanager.cache.CacheManager
Construct a new CacheManager
CacheNamedObj - Class in org.kepler.objectmanager.cache
Created by IntelliJ IDEA.
CacheNamedObj(CompositeEntity, String) - Constructor for class org.kepler.objectmanager.cache.CacheNamedObj
 
CacheNamedObj(CompositeEntity, CacheObject) - Constructor for class org.kepler.objectmanager.cache.CacheNamedObj
 
CacheObject - Class in org.kepler.objectmanager.cache
Class that represents an object in the ObjectCache.
CacheObject() - Constructor for class org.kepler.objectmanager.cache.CacheObject
default constructor. if you use this constrctor, you'll need to set the name and lsid through the setLSID and setName methods.
CacheObject(String, KeplerLSID) - Constructor for class org.kepler.objectmanager.cache.CacheObject
construct a new CacheObject
CacheObjectInterface - Interface in org.kepler.objectmanager.cache
Interface that represents an object in the ObjectCache.
cacheOutput - Variable in class org.ecoinformatics.seek.gis.gdal.GDALTranslateActor
how to use the cache, if at all
cacheOutput - Variable in class org.ecoinformatics.seek.gis.gdal.GDALWarpActor
how to use the cache, if at all
cachePath - Static variable in class org.kepler.objectmanager.cache.CacheManager
 
CACHETABLENAME - Static variable in class org.kepler.objectmanager.cache.CacheManager
 
CacheUtil - Class in org.kepler.objectmanager.cache
Class that represents an object in the ObjectCache.
CacheUtil() - Constructor for class org.kepler.objectmanager.cache.CacheUtil
 
CacheViewerTabPane - Class in org.kepler.objectmanager.cache.browser
 
CacheViewerTabPane() - Constructor for class org.kepler.objectmanager.cache.browser.CacheViewerTabPane
 
CacheViewerTabPane.Factory - Class in org.kepler.objectmanager.cache.browser
A factory that creates the library panel for the editors.
cachingStatus() - Method in class ptolemy.graph.analysis.strategy.CachedStrategy
Return the caching status of the strategy.
calculateNumRows(String, String, String, String, String[], String) - Method in class org.geon.LidarUtilities
 
calculateReleasedModules() - Method in class org.kepler.modulemanager.ModuleDownloader
find the released modules
CalendarQueue - Class in ptolemy.actor.util
This class implements a fast priority queue.
CalendarQueue(CQComparator) - Constructor for class ptolemy.actor.util.CalendarQueue
Construct an empty queue with a given comparator, which is used to sort the entries.
CalendarQueue(CQComparator, int, int) - Constructor for class ptolemy.actor.util.CalendarQueue
Construct an empty queue with the specified comparator, which is used to sort the entries, the specified minimum number of buckets, and the specified bin count factor.
call(Iterator<Tuple2<String, Tuple2<Iterable<Integer>, Iterable<Integer>>>>) - Method in class org.kepler.spark.examples.JavaWordCount.CoGroupCountWords
 
call(Iterator<Tuple2<Tuple2<String, Integer>, Tuple2<String, Integer>>>) - Method in class org.kepler.spark.examples.JavaWordCount.ComparePairs
 
call(Integer, Integer) - Method in class org.kepler.spark.examples.JavaWordCount.CountWords
 
call(Iterator<Tuple2<String, Iterable<Integer>>>) - Method in class org.kepler.spark.examples.JavaWordCount.CountWordsMap
 
call(Iterator<Tuple2<String, Tuple2<Integer, Integer>>>) - Method in class org.kepler.spark.examples.JavaWordCount.JoinFunction
 
call(Iterator<Tuple2<Long, ?>>) - Method in class org.kepler.spark.examples.JavaWordCount.TokenizeLine
 
call(Iterator<Tuple2<Object, Tuple2<Iterable<Object>, Iterable<Object>>>>) - Method in class org.kepler.spark.stub.KeplerCoGroupStub
 
call(Iterator<Tuple2<Tuple2<Object, Object>, Tuple2<Object, Object>>>) - Method in class org.kepler.spark.stub.KeplerCrossStub
Transfer the data from Spark to Kepler, execute the workflow, and then transfer the data from Kepler to Spark.
call(Iterator<Tuple2<Object, Object>>) - Method in class org.kepler.spark.stub.KeplerMapStub
Transfer the data from Spark to Kepler, execute the workflow, and then transfer the data from Kepler to Spark.
call(Iterator<Tuple2<Object, Tuple2<Object, Object>>>) - Method in class org.kepler.spark.stub.KeplerMatchStub
 
call(Iterator<Tuple2<Object, Iterable<Object>>>) - Method in class org.kepler.spark.stub.KeplerReduceStub
Transfer the data from Spark to Kepler, execute the workflow, and then transfer the data from Kepler to Spark.
call(Iterator<Tuple2<Object, Object>>) - Method in class org.kepler.spark.stub.ScriptEngineMapStub
Transfer the data from Spark to Kepler, execute the workflow, and then transfer the data from Kepler to Spark.
call(Iterator<Tuple2<Object, List<Object>>>) - Method in class org.kepler.spark.stub.ScriptEngineReduceStub
Transfer the data from Spark to Kepler, execute the workflow, and then transfer the data from Kepler to Spark.
call(TupleToken) - Method in interface ptolemy.component.Method
Call the method associated with this port with the specified arguments.
call(TupleToken) - Method in class ptolemy.component.MethodCallPort
Call the method associated with this port with the specified arguments.
CAMERAResourceMonitor - Class in org.camera.service
This actor reads a file or URL and outputs the entire file as a single string.
CAMERAResourceMonitor(CompositeEntity, String) - Constructor for class org.camera.service.CAMERAResourceMonitor
Construct an actor with a name and a container.
CAMERARESTService - Class in org.camera.service
This CAMERA specific REST Service automatically generates the ports and parameters upon reading the URL of the csdl file.
CAMERARESTService(CompositeEntity, String) - Constructor for class org.camera.service.CAMERARESTService
 
CAMERAURLProcessor - Class in org.camera.service
This CAMERA specific URL Process automatically generates the drop down based on the URL provided by the user from the StringParameter.
CAMERAURLProcessor(CompositeEntity, String) - Constructor for class org.camera.service.CAMERAURLProcessor
 
CANCEL - Static variable in interface org.kepler.authentication.AuthenticationListener
 
cancel(boolean) - Method in class org.ptolemy.commons.FutureValue
 
cancel() - Method in class ptolemy.gui.JTextAreaExec
Cancel any running commands.
CANCEL - Static variable in interface ptolemy.moml.ErrorHandler
Indicator to cancel parsing XML.
cancel() - Method in interface ptolemy.util.ExecuteCommands
Cancel any running commands.
cancel() - Method in class ptolemy.util.StreamExec
Cancel any running commands.
cancel() - Method in class ptolemy.util.test.WatchDog
Cancel the currently pending watchdog.
CANCEL_BUTTON_CAPTION - Static variable in class org.kepler.gui.SearchUIJPanel
 
cancelCellEditing() - Method in class org.kepler.plotting.table.ColorTableCellEditor
 
cancelCellEditing() - Method in class org.kepler.tagging.gui.ColorTableCellEditor
 
CancelException - Exception in ptolemy.gui
Deprecated.
Use ptolemy.util.CancelException.
CancelException() - Constructor for exception ptolemy.gui.CancelException
Deprecated.
Construct an exception with a default message.
CancelException(String) - Constructor for exception ptolemy.gui.CancelException
Deprecated.
Construct an exception with the specified message.
CancelException - Exception in ptolemy.util
An exception that is not reported to the user.
CancelException() - Constructor for exception ptolemy.util.CancelException
Construct an exception with a default message.
CancelException(String) - Constructor for exception ptolemy.util.CancelException
Construct an exception with the specified message.
cancelFireAt(Actor, Time) - Method in class ptolemy.domains.de.kernel.DEDirector
Cancel a requested firing of the given actor at the given model time microstep 1.
cancelFireAt(Actor, Time, int) - Method in class ptolemy.domains.de.kernel.DEDirector
Cancel a requested firing of the given actor at the given model time with the given microstep.
CancelFireAtTest - Class in ptolemy.domains.de.test
A test actor to test the cancelFireAt() method of the director.
CancelFireAtTest(CompositeEntity, String) - Constructor for class ptolemy.domains.de.test.CancelFireAtTest
Create an instance of the actor.
cancelFullScreen() - Method in class ptolemy.vergil.basic.ExtendedGraphFrame
Cancel full screen mode.
CancelSearchAction - Class in org.ecoinformatics.seek.ecogrid
This will destory a current window and shown the parent frame
CancelSearchAction(String, Window, EcogridPreferencesTab) - Constructor for class org.ecoinformatics.seek.ecogrid.CancelSearchAction
Constructor
cancelWeight(Element) - Method in class ptolemy.graph.ElementList
Disassociate the given element from its weight information.
canConvertTo(QBBuilderInterface) - Method in interface org.ecoinformatics.seek.querybuilder.QBBuilderInterface
This checks to see if this type of builder can convert the internal SQL to a more complex or less complex form.
canConvertTo(QBBuilderInterface) - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneAdvanced
This checks to see if this type of builder can convert the internal SQL to a more complex or less complex form.
canConvertTo(QBBuilderInterface) - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneIntermediate
This checks to see if this type of builder can convert the internal SQL to a more complex or less complex form.
canConvertTo(QBBuilderInterface) - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
This checks to see if this type of builder can convert the internal SQL to a more complex or less complex form.
canCreateBlankEffigy() - Method in class org.kepler.objectmanager.data.db.QBEffigy.Factory
Return true, indicating that this effigy factory is capable of creating an effigy without a URL being specified.
canCreateBlankEffigy() - Method in class org.sdm.spa.gui.DoubleShellTAPEffigy.ShellFactory
Return true, indicating that this effigy factory is capable of creating an effigy without a URL being specified.
canCreateBlankEffigy() - Method in class ptolemy.actor.gui.BrowserEffigy.Factory
Return true, indicating that this effigy factory is capable of creating an effigy without a URL being specified.
canCreateBlankEffigy() - Method in class ptolemy.actor.gui.EffigyFactory
Return true if this effigy factory is capable of creating an effigy without a URL being specified.
canCreateBlankEffigy() - Method in class ptolemy.actor.gui.exec.ExecShellEffigy.ShellFactory
Return true, indicating that this effigy factory is capable of creating an effigy without a URL being specified.
canCreateBlankEffigy() - Method in class ptolemy.actor.gui.ExpressionShellEffigy.ShellFactory
Return true, indicating that this effigy factory is capable of creating an effigy without a URL being specified.
canCreateBlankEffigy() - Method in class ptolemy.actor.gui.HTMLEffigyFactory
Return false, indicating that this effigy factory is not capable of creating an effigy without a URL being specified.
canCreateBlankEffigy() - Method in class ptolemy.actor.gui.ImageTokenEffigy.Factory
Return false, indicating that this effigy factory is not capable of creating an effigy without a URL being specified.
canCreateBlankEffigy() - Method in class ptolemy.actor.gui.PlotEffigy.Factory
Return false, indicating that this effigy factory is not capable of creating an effigy without a URL being specified.
canCreateBlankEffigy() - Method in class ptolemy.actor.gui.ptjacl.TclShellEffigy.ShellFactory
Return true, indicating that this effigy factory is capable of creating an effigy without a URL being specified.
canCreateBlankEffigy() - Method in class ptolemy.actor.gui.PtolemyEffigy.Factory
Return true, indicating that this effigy factory is capable of creating an effigy without a URL being specified.
canCreateBlankEffigy() - Method in class ptolemy.actor.gui.PtolemyEffigy.FactoryWithoutNew
Return false, indicating that this effigy factory is not capable of creating an effigy without a URL being specified.
canCreateBlankEffigy() - Method in class ptolemy.actor.gui.python.PythonShellEffigy.ShellFactory
Return true, indicating that this effigy factory is capable of creating an effigy without a URL being specified.
canCreateBlankEffigy() - Method in class ptolemy.actor.gui.TextEffigy.Factory
Return true, indicating that this effigy factory is capable of creating an effigy without a URL being specified.
canCreateBlankEffigy() - Method in class ptolemy.actor.gui.TokenEffigy.Factory
Return false, indicating that this effigy factory is not capable of creating an effigy without a URL being specified.
canCreateBlankEffigy() - Method in class ptolemy.vergil.actor.DocBuilderEffigy.Factory
Return false, indicating that this effigy factory is not capable of creating an effigy without a URL being specified.
canCreateBlankEffigy() - Method in class ptolemy.vergil.actor.DocEffigy.Factory
Return false, indicating that this effigy factory is not capable of creating an effigy without a URL being specified.
canDisplay(Token) - Static method in class ptolemy.actor.gui.MatrixTokenTableau
Return true if this tableau can display the specified token.
canDisplay(Token) - Static method in class ptolemy.actor.gui.TokenTableau
Return true if this tableau can display the specified token.
canDisplay(Token) - Static method in class ptolemy.actor.lib.image.ImageTableau
Return true if this tableau can display the specified token.
canExit() - Static method in class org.kepler.modulemanager.gui.CurrentSuitePanel
Perform sanity checks on the suite to see if Kepler will start using that suite.
canonicalize() - Method in class ptolemy.moml.unit.UnitEquation
Transform to the canonical form of the equation.
canonicalizeJarURL(URL) - Static method in class ptolemy.actor.gui.JNLPUtilities
Canonicalize a jar URL.
canopyBaseHeight - Variable in class org.kepler.gis.actor.landscape.CreateLandscape
Canopy base height raster (optional).
canopyBulkDensity - Variable in class org.kepler.gis.actor.landscape.CreateLandscape
Canopy bulk density raster (optional).
canopyCover - Variable in class org.kepler.gis.actor.landscape.CreateLandscape
Canoopy cover raster (required).
canopyHeight - Variable in class org.kepler.gis.actor.landscape.CreateLandscape
Canopy height raster (optional).
canvas - Variable in class org.kepler.tagging.gui.AutoCompleteComboBox
 
CANVAS_TYPE - Static variable in class ptolemy.vergil.toolbox.FigureAction
When the action was fired from a canvas interactor.
CanvasDropTargetListener - Class in org.kepler.gui
This class allows any class that wants to listen for canvas drop events to register a listener without having a direct reference to the canvas (BasicGraphFrame) itself.
CanvasDropTargetListener() - Constructor for class org.kepler.gui.CanvasDropTargetListener
 
CanvasNavigationModifierFactory - Class in org.kepler.gui
This class allows the configuration option canvasNavigationModifier to be passed via the moml configuration.
CanvasNavigationModifierFactory(NamedObj, String) - Constructor for class org.kepler.gui.CanvasNavigationModifierFactory
Create a factory with the given name and container.
capacity - Variable in class ptolemy.actor.lib.Recorder
The capacity of the record for each channel.
capacity - Variable in class ptolemy.domains.de.lib.Queue
The capacity of the queue.
capacity - Variable in class ptolemy.domains.de.lib.Server
The capacity of the queue.
CapeCodeApplication - Class in ptolemy.actor.gui.jnlp
Wrapper class to start up CapeCode, the subset that has the convenient feature that it automatically imports all the accessors at https://accessors.org and makes them available in an actor library to drag and drop into models.
CapeCodeApplication() - Constructor for class ptolemy.actor.gui.jnlp.CapeCodeApplication
 
CartesianToComplex - Class in ptolemy.actor.lib.conversions
Convert a Cartesian pair (represented as two double tokens) to a single complex token.
CartesianToComplex(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.conversions.CartesianToComplex
Construct an actor with the given container and name.
CartesianToPolar - Class in ptolemy.actor.lib.conversions
Convert a Cartesian pair, which is represented by two double tokens (x and y), to a polar form, which is also represented by two double tokens (magnitude and angle).
CartesianToPolar(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.conversions.CartesianToPolar
Construct an actor with the given container and name.
Case - Class in ptolemy.actor.lib.hoc
An actor that executes one of several refinements depending on the value provided by the control port-parameter.
Case(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.hoc.Case
Construct a modal model with a name and a container.
Case(Workspace) - Constructor for class ptolemy.actor.lib.hoc.Case
Construct a Case in the specified workspace with no container and an empty string as a name.
Case - Class in ptolemy.domains.modal.modal
Deprecated.
Use ptolemy.actor.lib.hoc.Case instead.
Case(CompositeEntity, String) - Constructor for class ptolemy.domains.modal.modal.Case
Deprecated.
Construct a modal model with a name and a container.
CaseDirector - Class in ptolemy.actor.lib.hoc
An CaseDirector governs the execution of a Case actor.
CaseDirector(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.hoc.CaseDirector
Construct a director in the given container with the given name.
CaseGraphController() - Constructor for class ptolemy.vergil.modal.CaseGraphFrame.CaseGraphController
 
CaseGraphFrame - Class in ptolemy.vergil.modal
This is a graph editor frame for ptolemy case models.
CaseGraphFrame(Case, Tableau) - Constructor for class ptolemy.vergil.modal.CaseGraphFrame
Construct a frame associated with the specified case actor.
CaseGraphFrame(Case, Tableau, LibraryAttribute) - Constructor for class ptolemy.vergil.modal.CaseGraphFrame
Construct a frame associated with the specified case actor.
CaseGraphFrame.AddCaseAction - Class in ptolemy.vergil.modal
Class implementing the Add Case menu command.
CaseGraphFrame.CaseGraphController - Class in ptolemy.vergil.modal
Specialized graph controller that handles multiple graph models.
CaseGraphFrame.RemoveCaseAction - Class in ptolemy.vergil.modal
Class implementing the Remove Case menu command.
CaseGraphTableau - Class in org.kepler.gui.frame
An editor tableau for case constructs in Ptolemy II.
CaseGraphTableau(PtolemyEffigy, String) - Constructor for class org.kepler.gui.frame.CaseGraphTableau
Create a new case editor tableau with the specified container and name.
CaseGraphTableau(PtolemyEffigy, String, LibraryAttribute) - Constructor for class org.kepler.gui.frame.CaseGraphTableau
Create a new case editor tableau with the specified container, name, and default library.
CaseGraphTableau - Class in ptolemy.vergil.modal
An editor tableau for case constructs in Ptolemy II.
CaseGraphTableau(PtolemyEffigy, String) - Constructor for class ptolemy.vergil.modal.CaseGraphTableau
Create a new case editor tableau with the specified container and name.
CaseGraphTableau(PtolemyEffigy, String, LibraryAttribute) - Constructor for class ptolemy.vergil.modal.CaseGraphTableau
Create a new case editor tableau with the specified container, name, and default library.
CaseGraphTableau.AddCaseAction - Class in org.kepler.gui.frame
Class implementing the Add Case menu command.
CaseGraphTableau.Factory - Class in org.kepler.gui.frame
A factory that creates graph editing tableaux for Ptolemy models.
CaseGraphTableau.Factory - Class in ptolemy.vergil.modal
A factory that creates graph editing tableaux for Ptolemy models.
cast(Token, Token) - Static method in class ptolemy.data.expr.UtilityFunctions
Convert the second token to the type of the first.
castReturnType(Type, Type) - Static method in class ptolemy.data.expr.UtilityFunctions
Return the type of the first argument.
catalog - Variable in class org.kepler.tagging.gui.CBItems.ExistingConceptCBItem
 
CatchExceptionAttribute - Class in ptolemy.actor.lib
This attribute catches exceptions and attempts to handle them with the specified policy.
CatchExceptionAttribute(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.CatchExceptionAttribute
Create a new actor in the specified container with the specified name.
CatchUpComposite - Class in ptolemy.actor.lib.hoc
This composite allows events to occur in the inside model between the times when the outside model invokes this composite.
CatchUpComposite(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.hoc.CatchUpComposite
Create an actor with a name and a container.
CatchUpComposite(Workspace) - Constructor for class ptolemy.actor.lib.hoc.CatchUpComposite
Construct a CatchUpComposite in the specified workspace with no container and an empty string as a name.
CatchUpComposite.Contents - Class in ptolemy.actor.lib.hoc
Contents composite that overrides the base class to have a parameter indicating whether to fire only when triggered.
categoryDatabaseName - Variable in class org.eol.WmsdActor
 
categoryList() - Static method in class ptolemy.data.unit.UnitUtilities
Return a copy of the category list.
CausalityInterface - Interface in ptolemy.actor.util
This interface defines a causality interfaces for actor networks as described in the paper "Causality Interfaces for Actor Networks" by Ye Zhou and Edward A.
CausalityInterfaceForComposites - Class in ptolemy.actor.util
This class elaborates its base class by providing an algorithm for inferring the causality interface of a composite actor from the causality interfaces of its component actors and their interconnection topology.
CausalityInterfaceForComposites(Actor, Dependency) - Constructor for class ptolemy.actor.util.CausalityInterfaceForComposites
Construct a causality interface for the specified actor.
CBItem() - Constructor for class org.kepler.tagging.gui.CBItems.CBItem
 
CBItems - Class in org.kepler.tagging.gui
 
CBItems() - Constructor for class org.kepler.tagging.gui.CBItems
 
CBItems.AddConceptCBItem - Class in org.kepler.tagging.gui
 
CBItems.CBItem - Class in org.kepler.tagging.gui
 
CBItems.ConceptCBItem - Class in org.kepler.tagging.gui
 
CBItems.ExistingConceptCBItem - Class in org.kepler.tagging.gui
 
CBItems.SeparatorCBItem - Class in org.kepler.tagging.gui
 
CBItems.TagManagerCBItem - Class in org.kepler.tagging.gui
 
CBItems.TruncatedExistingConceptCBItem - Class in org.kepler.tagging.gui
 
CBItems.TruncatedNamedOntClass - Class in org.kepler.tagging.gui
 
CDL - Class in org.json
This provides static methods to convert comma delimited text into a JSONArray, and to covert a JSONArray into comma delimited text.
CDL() - Constructor for class org.json.CDL
 
CEILING - Static variable in class ptolemy.math.Rounding
Singleton implementing ceiling rounding strategy.
cellConstraints() - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Returns the CellConstraints object that is used as a cursor and holds the current column span and row span.
CellConstraints - Class in com.jgoodies.forms.layout
Defines constraints for components that are layed out with the FormLayout.
CellConstraints() - Constructor for class com.jgoodies.forms.layout.CellConstraints
Constructs a default instance of CellConstraints.
CellConstraints(int, int) - Constructor for class com.jgoodies.forms.layout.CellConstraints
Constructs an instance of CellConstraints for the given cell position.
CellConstraints(int, int, CellConstraints.Alignment, CellConstraints.Alignment) - Constructor for class com.jgoodies.forms.layout.CellConstraints
Constructs an instance of CellConstraints for the given cell position, anchor, and fill.
CellConstraints(int, int, int, int) - Constructor for class com.jgoodies.forms.layout.CellConstraints
Constructs an instance of CellConstraints for the given cell position and size.
CellConstraints(int, int, int, int, CellConstraints.Alignment, CellConstraints.Alignment) - Constructor for class com.jgoodies.forms.layout.CellConstraints
Constructs an instance of CellConstraints for the given cell position and size, anchor, and fill.
CellConstraints(int, int, int, int, CellConstraints.Alignment, CellConstraints.Alignment, Insets) - Constructor for class com.jgoodies.forms.layout.CellConstraints
Constructs an instance of CellConstraints for the complete set of available properties.
CellConstraints(String) - Constructor for class com.jgoodies.forms.layout.CellConstraints
Constructs an instance of CellConstraints from the given encoded string properties.
CellConstraints.Alignment - Class in com.jgoodies.forms.layout
An ordinal-based serializable typesafe enumeration for component alignment types as used by the FormLayout.
cellEditor - Variable in class org.kepler.workflowrunmanager.gui.GroupableTableHeader
 
CELLHEIGHT - Static variable in class org.ecoinformatics.seek.ecogrid.ServicesDisplayPanel
 
CELLMAXWIDTH - Static variable in class org.ecoinformatics.seek.ecogrid.ServicesDisplayPanel
 
CELLMINIWIDTH - Static variable in class org.ecoinformatics.seek.ecogrid.ServicesDisplayPanel
 
CELLPREFERREDWIDTH - Static variable in class org.ecoinformatics.seek.ecogrid.ServicesDisplayPanel
 
cellSetFileName - Variable in class org.ecoinformatics.seek.garp.GarpAlgorithm
This is the name of the file containing the cellSet information.
cellSetFileName - Variable in class org.ecoinformatics.seek.garp.GarpPresampleLayers
input port can be used to supply the file name to be used in saving the cell set information.
cellSetFileNameOutput - Variable in class org.ecoinformatics.seek.garp.GarpPresampleLayers
This output port supplies the file name of the cellSetFile.
cellSetFileNameParameter - Variable in class org.ecoinformatics.seek.garp.GarpAlgorithm
This is the name of the file containing the cellSet information.
cellSetFileNameParameter - Variable in class org.ecoinformatics.seek.garp.GarpPresampleLayers
This parameter is the file name to be used in saving the cell set information.
cellsize - Variable in class org.ecoinformatics.seek.gis.java_gis.CVHull2Raster
Cell size of the grid to be created (assumed square).
cellsize - Variable in class org.ecoinformatics.seek.gis.java_gis.GridRescaler
The cell size of the output grid.
CENTER - Static variable in class com.jgoodies.forms.layout.CellConstraints
Put the component in the center.
CENTER - Static variable in class com.jgoodies.forms.layout.ColumnSpec
By default put the components in the center.
CENTER - Static variable in class com.jgoodies.forms.layout.RowSpec
By default put the components in the center.
CENTER - Static variable in class org.mlc.swing.layout.LayoutConstraintsManager
 
center - Variable in class ptolemy.vergil.basic.export.web.Title
A boolean parameter that controls whether the origin of the text is center (if true) or north-west.
centered - Variable in class ptolemy.vergil.kernel.attributes.FilledShapeAttribute
Indicator of whether the shape should be centered on the location.
centerOnScreen() - Method in class ptolemy.gui.Top
Center the window on the screen.
centers - Variable in class org.kepler.spark.mllib.KMeansClustering
The center of the clusters.
centers - Variable in class org.kepler.spark.mllib.KMeansModel
The center of the clusters.
CENTIMETER - Static variable in class com.jgoodies.forms.layout.ConstantSize
 
centimeterAsPixel(double, Component) - Static method in class com.jgoodies.forms.layout.Sizes
Converts Centimeters and returns pixels using the resolution of the given component's graphics object.
centimeterAsPixel(double, Component) - Method in class com.jgoodies.forms.util.AbstractUnitConverter
Converts Centimeters and returns pixels using the resolution of the given component's graphics object.
centimeterAsPixel(double, int) - Method in class com.jgoodies.forms.util.AbstractUnitConverter
Converts Centimeters and returns pixels using the specified resolution.
centimeterAsPixel(double, Component) - Method in interface com.jgoodies.forms.util.UnitConverter
Converts Centimeters and returns pixels using the resolution of the given component's graphics object.
cgHeaderObject - Variable in class org.kepler.workflowrunmanager.gui.ColumnGroup
The ColumnGroup header object of the column.
change - Variable in class org.resurgence.actor.TextFileWriter
The parameter, which specifies what should happen to existing files.
CHANGE_TAB - Static variable in class org.kepler.gui.frame.TabbedKeplerGraphFrameEvent
Constant to denote the selected tab has been changed.
Changeable - Interface in ptolemy.kernel.util
This is an interface for objects that support change requests that can be deferred.
changeAnalyzer(GraphAnalyzer) - Method in class ptolemy.graph.analysis.Analysis
Change the analyzer associated with this analysis class to the given analyzer.
changeColor(NamedOntModel, Color) - Method in class org.kepler.tagging.gui.ExistingTagsPanel
 
changeColor(NamedOntModel, Color) - Method in class org.kepler.tagging.gui.TagBarDisplayUI
 
changeColumnType(Column, Column) - Method in class org.kepler.util.sql.DatabaseType
Change the type of a column.
changeCount() - Method in class ptolemy.graph.Graph
Return the present value of a counter that keeps track of changes to the graph.
changed(String) - Method in class ptolemy.actor.gui.PortConfigurer
Deprecated.
Called to notify that one of the entries has changed.
changed(String) - Method in class ptolemy.actor.gui.PtolemyQuery
Queue a change request to alter the value of the attribute attached to the specified entry, if there is one.
changed(String) - Method in class ptolemy.actor.gui.RenameConfigurer
Called to notify that one of the entries has changed.
changed(String) - Method in class ptolemy.actor.gui.style.StyleConfigurer
Generate a change request to apply the changes.
changed(String) - Method in class ptolemy.actor.gui.TextEditor
React to a change in the find-and-replace query.
changed(String) - Method in class ptolemy.gui.demo.FileChooserQuery
Called to notify that one of the entries has changed.
changed(String) - Method in interface ptolemy.gui.QueryListener
Called to notify that one of the entries has changed.
changed(String) - Method in class ptolemy.vergil.basic.SearchResultsDialog
Execute the search.
changedSinceCheckpoint() - Method in class org.kepler.objectmanager.cache.LocalRepositoryManager
Check to see if the LocalRepositories have changed since the last time setCheckpoint() was called.
changedState - Variable in class org.kepler.gui.state.StateChangeEvent
 
changedUpdate(DocumentEvent) - Method in class org.kepler.reporting.gui.DynamicReportItemPanel.DynamicReportItemLabelDocumentListener
 
changedUpdate(DocumentEvent) - Method in class org.kepler.reporting.gui.ReportDesignerPanel.SectionHeaderDocumentListener
 
changedUpdate(DocumentEvent) - Method in class org.kepler.reporting.gui.ReportDesignerPanel.TextAreaDocumentListener
 
changedUpdate(DocumentEvent) - Method in class org.kepler.reporting.gui.ReportDesignerPanel.TitleDocumentListener
 
changedUpdate(DocumentEvent) - Method in class ptolemy.actor.gui.TextEditor
React to notification that an attribute or set of attributes changed.
changeExecuted(ChangeRequest) - Method in class org.kepler.ddp.actor.ExecutionChoice
React to the fact that the change has been successfully executed by doing nothing.
changeExecuted(ChangeRequest) - Method in class org.kepler.gui.frame.TabbedKeplerGraphFrame
Listen for name changes in the model.
changeExecuted(ChangeRequest) - Method in class org.kepler.moml.NamedObjId
 
changeExecuted(ChangeRequest) - Method in class org.kepler.profiling.gui.CurrentExecutionPanel
A changed occurred in the workflow structure.
changeExecuted(ChangeRequest) - Method in class org.kepler.provenance.ProvenanceRecorder
React to a change request has been successfully executed.
changeExecuted(ChangeRequest) - Method in class org.kepler.util.RenameListener
 
changeExecuted(ChangeRequest) - Method in class org.kepler.workflow.WorkflowManager
 
changeExecuted(ChangeRequest) - Method in class ptolemy.actor.gui.EditParametersDialog
React to the fact that a change has been successfully executed.
changeExecuted(ChangeRequest) - Method in class ptolemy.actor.gui.OpenInstanceDialog
Update the table.
changeExecuted(ChangeRequest) - Method in class ptolemy.actor.gui.PortConfigurerDialog
Notify the listener that a change has been successfully executed.
changeExecuted(ChangeRequest) - Method in class ptolemy.actor.gui.PtolemyEffigy
React to the fact that a change has been successfully executed.
changeExecuted(ChangeRequest) - Method in class ptolemy.actor.gui.PtolemyQuery
Notify this class that a change has been successfully executed by the change handler.
changeExecuted(ChangeRequest) - Method in class ptolemy.actor.gui.RenameConfigurer
React to the fact that the change has been successfully executed by doing nothing.
changeExecuted(ChangeRequest) - Method in class ptolemy.actor.lib.SetVariable
Do nothing.
changeExecuted(ChangeRequest) - Method in class ptolemy.domains.modal.modal.ModalModel
React to a change request has been successfully executed.
changeExecuted(ChangeRequest) - Method in interface ptolemy.kernel.util.ChangeListener
React to a change request has been successfully executed.
changeExecuted(ChangeRequest) - Method in class ptolemy.kernel.util.StreamChangeListener
Print the description of the change to the stream output.
changeExecuted(ChangeRequest) - Method in class ptolemy.kernel.util.test.system.ChangeRequestTest
React to a change request has been successfully executed by doing nothing.
changeExecuted(ChangeRequest) - Method in class ptolemy.moml.ConvertToLazy
React to a change request has been successfully executed by doing nothing.
changeExecuted(ChangeRequest) - Method in class ptolemy.moml.MoMLParser
React to a change request has been successfully executed.
changeExecuted(ChangeRequest) - Method in class ptolemy.moml.MoMLSimpleApplication
React to a change request has been successfully executed by doing nothing.
changeExecuted(ChangeRequest) - Method in class ptolemy.moml.MoMLUndoEntry
Do nothing.
changeExecuted(ChangeRequest) - Method in class ptolemy.vergil.actor.ActorGraphModel
This implementation will delegate to the implementation in the parent class and will additionally update the model in case it is necessary.
changeExecuted(ChangeRequest) - Method in class ptolemy.vergil.actor.ActorGraphModel.LinkModel.LinkChangeListener
Called after the change has been executed.
changeExecuted(ChangeRequest) - Method in class ptolemy.vergil.actor.lib.ModelDisplay
Do nothing.
changeExecuted(ChangeRequest) - Method in class ptolemy.vergil.basic.AbstractBasicGraphModel
Notify the listener that a change has been successfully executed.
changeExecuted(ChangeRequest) - Method in class ptolemy.vergil.basic.BasicGraphFrame
React to the fact that a change has been successfully executed by marking the data associated with this window modified.
changeExecuted(ChangeRequest) - Method in class ptolemy.vergil.debugger.BreakpointConfigurer
React to a change request has been successfully executed.
changeExecuted(ChangeRequest) - Method in class ptolemy.vergil.tree.EntityTreeModel.TreeUpdateListener
Trigger an update of the tree.
changeExecuted(ChangeRequest) - Method in class ptolemy.vergil.unit.UnitConstraintsDialog
 
changeExecutionLSID(int, KeplerLSID, Queryable) - Method in class org.kepler.provenance.Recording
Change execution LSID for an execution Id.
changeExecutionLSID(int, KeplerLSID, Queryable) - Method in class org.kepler.provenance.sql.SQLRecordingV8
Change execution LSID for an execution Id.
changeExecutionType(KeplerLSID, WorkflowRun.type) - Method in class org.kepler.provenance.sql.SQLRecordingV8
Change the execution type.
changeFailed(ChangeRequest, Exception) - Method in class org.kepler.ddp.actor.ExecutionChoice
React to the fact that the change has failed by reporting it.
changeFailed(ChangeRequest, Exception) - Method in class org.kepler.moml.NamedObjId
 
changeFailed(ChangeRequest, Exception) - Method in class org.kepler.profiling.gui.CurrentExecutionPanel
A change failed in the workflow structure.
changeFailed(ChangeRequest, Exception) - Method in class org.kepler.provenance.ProvenanceRecorder
React to a change request has resulted in an exception.
changeFailed(ChangeRequest, Exception) - Method in class org.kepler.util.RenameListener
 
changeFailed(ChangeRequest, Exception) - Method in class org.kepler.workflow.WorkflowManager
 
changeFailed(ChangeRequest, Exception) - Method in class ptolemy.actor.gui.EditParametersDialog
Notify the listener that a change has resulted in an exception.
changeFailed(ChangeRequest, Exception) - Method in class ptolemy.actor.gui.OpenInstanceDialog
Do nothing.
changeFailed(ChangeRequest, Exception) - Method in class ptolemy.actor.gui.PortConfigurerDialog
Notify the listener that a change has resulted in an exception.
changeFailed(ChangeRequest, Exception) - Method in class ptolemy.actor.gui.PtolemyEffigy
React to the fact that a change has triggered an error by reporting the error in a top-level dialog.
changeFailed(ChangeRequest, Exception) - Method in class ptolemy.actor.gui.PtolemyQuery
Notify the listener that a change attempted by the change handler has resulted in an exception.
changeFailed(ChangeRequest, Exception) - Method in class ptolemy.actor.gui.RenameConfigurer
React to the fact that the change has failed by reporting it.
changeFailed(ChangeRequest, Exception) - Method in class ptolemy.actor.lib.SetVariable
React to the fact that a change failed by setting a flag that causes an exception to be thrown in next call to prefire() or wrapup().
changeFailed(ChangeRequest, Exception) - Method in class ptolemy.domains.modal.modal.ModalModel
React to a change request has resulted in an exception.
changeFailed(ChangeRequest, Exception) - Method in interface ptolemy.kernel.util.ChangeListener
React to a change request has resulted in an exception.
changeFailed(ChangeRequest, Exception) - Method in class ptolemy.kernel.util.StreamChangeListener
Print the description of the failure to the stream output.
changeFailed(ChangeRequest, Exception) - Method in class ptolemy.kernel.util.test.system.ChangeRequestTest
React to a change request that has resulted in an exception.
changeFailed(ChangeRequest, Exception) - Method in class ptolemy.moml.ConvertToLazy
React to a change request that has resulted in an exception.
changeFailed(ChangeRequest, Exception) - Method in class ptolemy.moml.MoMLParser
React to a change request has resulted in an exception.
changeFailed(ChangeRequest, Exception) - Method in class ptolemy.moml.MoMLSimpleApplication
React to a change request that has resulted in an exception.
changeFailed(ChangeRequest, Exception) - Method in class ptolemy.moml.MoMLUndoEntry
Record the exception so that execute() can throw it.
changeFailed(ChangeRequest, Exception) - Method in class ptolemy.vergil.actor.ActorGraphModel.LinkModel.LinkChangeListener
Handled a failed change request.
changeFailed(ChangeRequest, Exception) - Method in class ptolemy.vergil.actor.lib.ModelDisplay
Stop executing the model.
changeFailed(ChangeRequest, Exception) - Method in class ptolemy.vergil.basic.AbstractBasicGraphModel
Notify the listener that the change has failed with the specified exception.
changeFailed(ChangeRequest, Exception) - Method in class ptolemy.vergil.basic.BasicGraphFrame
React to the fact that a change has triggered an error by doing nothing (the effigy is also listening and will report the error).
changeFailed(ChangeRequest, Exception) - Method in class ptolemy.vergil.debugger.BreakpointConfigurer
React to a change request has resulted in an exception.
changeFailed(ChangeRequest, Exception) - Method in class ptolemy.vergil.tree.EntityTreeModel.TreeUpdateListener
Trigger an update of the tree.
changeFailed(ChangeRequest, Exception) - Method in class ptolemy.vergil.unit.UnitConstraintsDialog
 
ChangeFixedWidth1ToAuto - Class in ptolemy.moml.filter
When this class is registered with the MoMLParser.setMoMLFilter() method, it will cause MoMLParser to filter so that models from earlier releases will run in the current release.
ChangeFixedWidth1ToAuto() - Constructor for class ptolemy.moml.filter.ChangeFixedWidth1ToAuto
 
ChangeListener - Interface in ptolemy.kernel.util
A ChangeListener is an interface implemented by objects that are interested in being kept informed about changes in a model as they are executed.
changePolygon(int, int, int, int, int) - Method in class org.ecoinformatics.seek.querybuilder.DBTableJoinItem
Change contents of one of the polygons
ChangeRequest - Class in ptolemy.kernel.util
Abstract base class for change requests.
ChangeRequest(Object, String) - Constructor for class ptolemy.kernel.util.ChangeRequest
Construct a request with the specified source and description.
ChangeRequest(Object, String, boolean) - Constructor for class ptolemy.kernel.util.ChangeRequest
Construct a request with the specified source and description.
changeRequest - Variable in class ptolemy.kernel.util.test.system.ChangeRequestTest
ChangeRequest that modifies the system.
ChangeRequestTest - Class in ptolemy.kernel.util.test.system
Test for ChangeRequest.
ChangeRequestTest() - Constructor for class ptolemy.kernel.util.test.system.ChangeRequestTest
Constructor.
changeTest() - Static method in class org.kepler.configuration.ConfigurationTest
 
changeWeight(Element) - Method in class ptolemy.graph.ElementList
Given an element in this list, check if the weight has changed (since the element was added to the graph or was last validated, whichever is more recent), and if so, change the current mapping of a weight to the element or remove the element from the set of unweighted elements.
channel - Variable in class ptolemy.actor.lib.Publisher
The name of the channel.
channel - Variable in class ptolemy.actor.lib.Subscriber
The name of the channel.
channel - Variable in class ptolemy.actor.PubSubPort
If set, then this port is used to communicate over a named publish and subscribe channel, rather than over manually established connections.
channel - Variable in class ptolemy.domains.pn.kernel.NondeterministicMerge
Output port used to indicate which input channel the current output came from.
CHANNEL_NAMES_OUTPUT_PORT - Static variable in class org.kepler.data.datasource.dataturbine.DataTurbine
channelNames - This output port outputs all of the filtered (non-metric) channel names.
channelContainer - Variable in class org.kepler.data.datasource.dataturbine.DataTurbineWriter
Name of channel container.
channelNumber - Variable in class ptolemy.actor.lib.Maximum
The output port for the channel number.
channelNumber - Variable in class ptolemy.actor.lib.Minimum
The output port for the channel number.
CHANNELS - Static variable in class ptolemy.media.javasound.LiveSoundEvent
The value indicates a channel number change event.
characters(String) - Method in class org.kepler.reporting.rio.fop.tools.EasyGenerationContentHandlerProxy
Send a String of character data.
characters(char[], int, int) - Method in class org.kepler.reporting.rio.fop.tools.EasyGenerationContentHandlerProxy
 
characters(char[], int, int) - Method in class org.kepler.workflowscheduler.gui.QueryingSchedulerServerResultParser
SAX Handler that is called for each XML text node
characters(char[], int, int) - Method in class org.kepler.workflowscheduler.gui.ServerTimeZoneIDParser
SAX Handler that is called for each XML text node
characters(char[], int, int) - Method in class ptolemy.configs.test.ValidatingXMLParser
 
charData(char[], int, int) - Method in class com.microstar.xml.demo.EventDemo
Handle character data by printing an event.
charData(char[], int, int) - Method in class com.microstar.xml.demo.XmlApp
Handle character data.
charData(char[], int, int) - Method in class com.microstar.xml.demo.XmlApplet
Handle character data.
charData(char[], int, int) - Method in class com.microstar.xml.driver.SAXDriver
Implement com.microstar.xml.XmlHandler#charData.
charData(char[], int, int) - Method in class com.microstar.xml.HandlerBase
Handle character data.
charData(char[], int, int) - Method in interface com.microstar.xml.XmlHandler
Character data.
charData(char[], int, int) - Method in class ptolemy.moml.MoMLParser
Handle character data.
charData(char[], int, int) - Method in class ptolemy.plot.plotml.PlotBoxMLParser
Handle character data.
charData(char[], int, int) - Method in class ptolemy.vergil.actor.DocManager
Handle character data.
check(File, String) - Method in class org.kepler.io.MappedLog
 
check(boolean) - Static method in class org.kepler.modulemanager.gui.patch.PatchChecker
Check for and install any patches.
check(boolean, boolean, boolean) - Static method in class org.kepler.modulemanager.gui.patch.PatchChecker
Check for and install any patches for modules.
check() - Method in class ptolemy.actor.gui.Configuration
Check the configuration for common style problems.
checkAck(InputStream) - Static method in class org.kepler.ssh.SshExec
 
checkActionWithAuthentication() - Method in class org.kepler.workflowscheduler.gui.SchedulerAbstractAction
Check if an action with authentication process is done
CHECKBOX_MENUITEM_TYPE - Static variable in class org.kepler.gui.MenuMapper
 
CheckBoxStyle - Class in ptolemy.actor.gui.style
This attribute annotates user settable attributes to specify a checkbox style for configuring the containing attribute.
CheckBoxStyle() - Constructor for class ptolemy.actor.gui.style.CheckBoxStyle
Construct an attribute in the default workspace with an empty string as its name.
CheckBoxStyle(Workspace) - Constructor for class ptolemy.actor.gui.style.CheckBoxStyle
Construct an attribute in the given workspace with an empty string as its name.
CheckBoxStyle(Parameter, String) - Constructor for class ptolemy.actor.gui.style.CheckBoxStyle
Construct an attribute with the specified container and name.
CheckBoxTableCellEditor - Class in org.ecoinformatics.seek.ecogrid
This class is cell editor for check box renderer
CheckBoxTableCellEditor(JTable, JCheckBox, Vector, int) - Constructor for class org.ecoinformatics.seek.ecogrid.CheckBoxTableCellEditor
Constructor with serviceList and topRowNum
CheckBoxTableCellRenderer - Class in org.ecoinformatics.seek.ecogrid
This class will render a table cell as panel - label + a check box
CheckBoxTableCellRenderer(JTable, Vector, int) - Constructor for class org.ecoinformatics.seek.ecogrid.CheckBoxTableCellRenderer
Default Constructor
checkCloneFields(NamedObj) - Static method in class ptolemy.actor.gui.Configuration
Check that clone(Workspace) method properly sets the fields.
checkCompleteDemos(String) - Static method in class ptolemy.actor.gui.HTMLAbout
Check that all the demos in otherDemos are in completeDemos.
checkCondition - Variable in class org.resurgence.actor.StatusChecker
A regular expression for which to check in the output.
checkCopy(String, NamedObj) - Method in class ptolemy.moml.MoMLVariableChecker
Check for problems in the moml to be copied.
checkCopy(String, NamedObj, boolean) - Method in class ptolemy.moml.MoMLVariableChecker
Check for problems in the moml to be copied.
checkDependencies() - Method in class org.kepler.gui.kar.ImportModuleDependenciesAction
Check the dependencies and ask the user how to proceed.
checkDirectorIterations(CompositeActor, boolean) - Static method in class org.kepler.ddp.Utilities
Check the director and its iterations with the runWorkflowLifecyclePerInput value.
checkEdge(Edge, Graph) - Static method in exception ptolemy.graph.GraphElementException
Verify that an edge is in the container graph.
checkEmptyString(String) - Static method in class org.camera.service.ServiceUtils
Checks if supplied string is empty or null
checkEmptyString(String) - Static method in class org.kepler.actor.rest.ServiceUtils
Checks if supplied string is empty or null
checkForCycles() - Method in class ptolemy.actor.util.CausalityInterfaceForComposites
Check the associated composite actor for causality cycles.
checkForDTD(URL, String, String) - Static method in class ptolemy.actor.gui.EffigyFactory
Check the URL input for a DTD.
checkForFileUpdates - Variable in class ptolemy.actor.parameters.ParameterSet
If this parameter is set to true, then the specified file or URL will be checked for updates on every prefiring of the enclosing opaque composite actor.
checkForOverlap - Variable in class org.ecoinformatics.seek.taxon.GetTaxa
 
checkForSupportedDirector() - Method in class org.kepler.provenance.ProvenanceRecorder
Check if the director is supported.
checkIfDuplicate(LibItem) - Method in class org.kepler.objectmanager.library.LibIndex
Take a LibItem and check to see if there is already an entry in the sql table for it depending on the type,name,and parent.
checkIfModuleDependenciesSatisfied(Vector<String>) - Static method in class org.kepler.kar.ModuleDependencyUtil
 
checkIfPortNameExists(String) - Method in class org.camera.service.CAMERARESTService
This method checks if the port with the provided name exists or not.
checkIfTagAlreadyInserted(int, String) - Method in class org.kepler.provenance.sql.SQLRecordingV8
 
checkInterfaceCompatibility(int, boolean) - Method in class ptolemy.chic.ChicInvoker
Check the interface compatibility of all entities that are directly or indirectly contained by the container of this attribute.
CheckModelSize - Class in ptolemy.actor.gui
Class that checks the size, zoom, and location of a model.
CheckModelSize() - Constructor for class ptolemy.actor.gui.CheckModelSize
 
checkModelSize(Configuration, String[]) - Static method in class ptolemy.actor.gui.CheckModelSize
Check the size, zoom and location of the models named by the args.
checkNamedObjLSID(NamedObj) - Method in class org.kepler.kar.SaveKAR
Every NamedObj should have an LSID.
checkNamedObjName(NamedObj) - Method in class org.kepler.kar.SaveKAR
Check a namedObj's name.
checkNode(Node, Graph) - Static method in exception ptolemy.graph.GraphElementException
Verify that a node is in the container graph.
checkOnly - Variable in class org.kepler.actor.MappedLogger
Boolean flag.
checkOutputSpecs(JobContext) - Method in class org.kepler.hadoop.io.output.TokenOutputFormat
 
checkOutputTimestamp - Variable in class org.kepler.ddp.actor.ExecutionChoice
If true, verify the last modification timestamp for each output file has increased after execution.
checkpointAllServers() - Static method in class org.kepler.util.sql.HSQL
Checkpoint any servers to compact their size.
checkPort(Port) - Method in class ptolemy.actor.test.TestTypedIORelation
Throw an exception if the specified port cannot be linked to this relation (is not of class TypedIOPort).
checks - Variable in class org.ROADnet.QAQC
The checks String.
checkSingleObject(NamedObj, boolean) - Method in class org.kepler.gui.kar.ExportArchiveAction
Check a single NamedObj for LSID, name, and SemanticType.
checkSizeAndDate - Variable in class org.kepler.actor.io.SshDirectoryList
Specifying whether the output should contain modified files as well, or only brand new files.
checkSizeAndDate - Variable in class org.kepler.actor.io.SshDirectoryList_v1_1
Specifying whether the output should contain modified files as well, or only brand new files.
checkVersion - Variable in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource
This parameter determines if remote source should be queried for latest revision of metadata file.
checkVersion(DatabaseType, Schema) - Static method in class org.kepler.provenance.sql.Schemas
Verify the schema version in the database matches the version of the schema parameter.
checkWidthConstraints() - Method in class ptolemy.actor.IOPort
Check whether the widths constraints are met.
ChicAttribute - Class in ptolemy.chic
An attribute that has a string value which is meant to be used as an interface in Chic.
ChicAttribute(NamedObj, String) - Constructor for class ptolemy.chic.ChicAttribute
Construct an attribute with the given name contained by the specified container and annotate it with a TextStyle attribute.
chicAttributeName - Variable in class ptolemy.chic.ChicInvoker
A StringAttribute representing the name of the ChicAttributes that are to be queried while collecting the interfaces upon which Chic is to be invoked.
ChicController - Class in ptolemy.chic
This class provides interaction with nodes that represent ChicInvoker visible attributes.
ChicController(GraphController) - Constructor for class ptolemy.chic.ChicController
Create a Chic controller associated with the specified graph controller with full access.
ChicController(GraphController, AttributeController.Access) - Constructor for class ptolemy.chic.ChicController
Create a Chic controller associated with the specified graph controller.
ChicControllerFactory - Class in ptolemy.chic
This is an attribute that produces a custom node controller for Chic visible attributes.
ChicControllerFactory(NamedObj, String) - Constructor for class ptolemy.chic.ChicControllerFactory
Construct a new attribute with the given container and name.
ChicInvoker - Class in ptolemy.chic
This attribute is a visible attribute used for invoking Chic (Checker for Interface Compatibility) on its container.
ChicInvoker(NamedObj, String) - Constructor for class ptolemy.chic.ChicInvoker
Construct an attribute with the specified container and name.
child(int) - Method in class org.sdm.spa.gui.XMLUIP.AdapterNode
 
childCount() - Method in class org.sdm.spa.gui.XMLUIP.AdapterNode
 
childExists(Integer, String) - Method in class org.kepler.objectmanager.library.LibIndex
Return true if there is a child of the parent in the index with the given name.
children - Variable in class ptolemy.data.expr.SimpleNode
 
ChoiceAction - Interface in ptolemy.domains.modal.kernel
An action implementing this interface is a choice action.
choiceActionList() - Method in class ptolemy.domains.modal.kernel.Transition
Return the list of choice actions contained by this transition.
ChoiceParameter - Class in ptolemy.data.expr
This parameter contains a string value and has a list of acceptable choices.
ChoiceParameter(NamedObj, String, Class<?>) - Constructor for class ptolemy.data.expr.ChoiceParameter
Construct a parameter with the given name contained by the specified entity.
choices - Variable in class ptolemy.data.expr.ChoiceStringParameter
A comma-separated list of choices.
ChoiceStringParameter - Class in ptolemy.data.expr
This parameter contains a string value and has a list of acceptable choices.
ChoiceStringParameter(NamedObj, String) - Constructor for class ptolemy.data.expr.ChoiceStringParameter
Construct a parameter with the given name contained by the specified entity.
ChoiceStyle - Class in ptolemy.actor.gui.style
This attribute annotates user settable attributes to specify an uneditable combobox style for configuring the containing attribute.
ChoiceStyle() - Constructor for class ptolemy.actor.gui.style.ChoiceStyle
Construct an attribute in the default workspace with an empty string as its name.
ChoiceStyle(Workspace) - Constructor for class ptolemy.actor.gui.style.ChoiceStyle
Construct an attribute in the given workspace with an empty string as its name.
ChoiceStyle(NamedObj, String) - Constructor for class ptolemy.actor.gui.style.ChoiceStyle
Construct an attribute with the specified container and name.
choleskyDecomposition(double[][]) - Static method in class ptolemy.data.expr.UtilityFunctions
Returns the lower triangular matrix L that satisfies LL*=A
Chop - Class in ptolemy.domains.sdf.lib
This actor reads a sequence of input tokens of any type, and writes a sequence of tokens constructed from the input sequence (possibly supplemented with zeros).
Chop(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.Chop
Construct an actor in the specified container with the specified name.
chunkSize - Variable in class org.kepler.ddp.actor.pattern.DDPDataSource
The chunk size for token data.
CircularDependencyError(Nameable, String) - Constructor for exception ptolemy.data.expr.Variable.CircularDependencyError
 
CkptFile - Variable in class org.sdm.spa.ProcessFileRT
 
CLASS_ELEMENT_HIGHLIGHT_COLOR - Static variable in class ptolemy.vergil.basic.LocatableNodeController
A fourth argument would this highlight translucent, which would enable combination with other highlights.
ClassAndEntityTreeModel - Class in ptolemy.vergil.tree
A tree model for Ptolemy II models that includes class definitions and entities.
ClassAndEntityTreeModel(NamedObj) - Constructor for class ptolemy.vergil.tree.ClassAndEntityTreeModel
Create a new tree model with the specified root.
ClassChanges - Class in ptolemy.moml.filter
When this class is registered with the MoMLParser.setMoMLFilter() method, it will cause MoMLParser to filter so that models from earlier releases will run in the current release.
ClassChanges() - Constructor for class ptolemy.moml.filter.ClassChanges
 
ClassDefinitionController - Class in ptolemy.vergil.actor
This class provides interaction with nodes that represent Ptolemy II classes.
ClassDefinitionController(GraphController) - Constructor for class ptolemy.vergil.actor.ClassDefinitionController
Create an actor instance controller associated with the specified graph controller with full access.
ClassDefinitionController(GraphController, AttributeController.Access) - Constructor for class ptolemy.vergil.actor.ClassDefinitionController
Create a controller associated with the specified graph controller with the specified access.
classDefinitionList() - Method in class ptolemy.actor.LazyTypedCompositeActor
List the contained class definitions in the order they were added (using their setContainer() method).
classDefinitionList() - Method in class ptolemy.kernel.CompositeEntity
List the contained class definitions in the order they were added (using their setContainer() method).
classDefinitionList() - Method in class ptolemy.moml.EntityLibrary
List the contained class definitions in the order they were added (using their setContainer() method).
classesToRemove - Variable in class ptolemy.actor.gui.Configuration
A Parameter that is an array of Strings where each element names a class to be removed.
ClassicViewPane - Class in org.kepler.gui
A ViewPane consisting of 4 ViewPaneLocations.
ClassicViewPane() - Constructor for class org.kepler.gui.ClassicViewPane
Constructor.
ClassicViewPane.Factory - Class in org.kepler.gui
A factory that creates the library panel for the editors.
ClassLoadingStrategy - Interface in org.ptolemy.classloading
Strategy to be able to switch class loading mechanisms, depending on the needs for a runtime environment (especially for actors and other model entities), In a "plain" Java SE runtime, a default implementation would use simple Class.forName() (for Java classes) or local file-lookup (for actor-oriented classes) or similar.
classname - Variable in class org.ROADnet.RecordToObject
 
className - Variable in class ptolemy.actor.lib.ClassWrapper
The name of the Java class.
className - Variable in class ptolemy.domains.modal.modal.RefinementExtender
The full name of the refinement class.
CLASSNAME - Static variable in class ptolemy.kernel.util.NamedObj
Indicate that the description(int) method should include the class name.
ClassUtilities - Class in ptolemy.util
A collection of utilities for manipulating classes.
ClassWrapper - Class in ptolemy.actor.lib
This actor wraps (an instance of) a Java class specified by the className parameter.
ClassWrapper(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.ClassWrapper
Construct an actor with the given container and name.
clean(File) - Static method in class org.kepler.util.FileUtil
Always return the true unique string representation of a file with no trailing separators.
cleanFirst - Variable in class ptolemy.vergil.actor.DocBuilder
If true, then clean before building documentation.
cleanUp() - Method in class org.kepler.cloudsharing.util.WorkflowResults
Free sources.
cleanup() - Method in class org.kepler.hadoop.execution.KeplerAppBase
Perform cleanup after all inputs are processed.
cleanup(Mapper<WritableComparable, Writable, WritableComparable, Writable>.Context) - Method in class org.kepler.hadoop.mapreduce.Mapper4Cross
 
cleanup(Mapper<WritableComparable, Writable, WritableComparable, Writable>.Context) - Method in class org.kepler.hadoop.mapreduce.Mapper4DataTransform
 
cleanup(Mapper<WritableComparable, Writable, WritableComparable, Writable>.Context) - Method in class org.kepler.hadoop.mapreduce.Mapper4Match
 
cleanup(Mapper<WritableComparable, Writable, WritableComparable, Writable>.Context) - Method in class org.kepler.hadoop.mapreduce.MapReduce4Kepler.Mapper4Kepler
 
cleanup(Reducer<WritableComparable, Writable, WritableComparable, Writable>.Context) - Method in class org.kepler.hadoop.mapreduce.MapReduce4Kepler.Reducer4Kepler
 
cleanup(Reducer<WritableComparable, TaggedValue, WritableComparable, Writable>.Context) - Method in class org.kepler.hadoop.mapreduce.Reducer4CoGroup
 
cleanup(Reducer<WritableComparable, TaggedValue, WritableComparable, Writable>.Context) - Method in class org.kepler.hadoop.mapreduce.Reducer4Match
 
cleanUp() - Method in class ptolemy.actor.gui.AbstractPlaceableActor
Free up memory when closing.
cleanUp() - Method in class ptolemy.actor.gui.AbstractPlaceableJavaSE
Free up memory when closing.
cleanUp() - Method in class ptolemy.actor.lib.gui.Display
Free up memory when closing.
cleanUp() - Method in interface ptolemy.actor.lib.gui.DisplayInterface
Free up memory when closing.
cleanUp() - Method in class ptolemy.actor.lib.gui.DisplayJavaSE
Free up memory when closing.
cleanUp() - Method in class ptolemy.actor.lib.gui.PlotterBase
Free up memory when closing.
cleanUp() - Method in interface ptolemy.actor.lib.gui.PlotterBaseInterface
Free up memory when closing.
cleanUp() - Method in class ptolemy.actor.lib.gui.PlotterBaseJavaSE
Free up memory when closing.
cleanUp() - Method in class ptolemy.actor.lib.image.ImageDisplay
Free up memory when closing.
cleanUp() - Method in interface ptolemy.actor.lib.image.ImageDisplayInterface
Free up memory when closing.
cleanUp() - Method in class ptolemy.actor.lib.image.ImageDisplayJavaSE
Free up memory when closing.
cleanup() - Method in class ptolemy.moml.MoMLSimpleApplication
Clean up by freeing memory.
cleanupAfterError - Variable in class org.kepler.actor.gsissh.ExecGsisshCmd
Enforce killing remote process(es) after an error or timeout.
cleanupAfterError - Variable in class org.kepler.actor.ssh.ExecuteCmd
Enforce killing remote process(es) after an error or timeout.
cleanupAfterError - Variable in class org.sdm.spa.actors.transport.GenericFileCopier
Enforce killing remote process(es) after an error or timeout.
cleanupAfterError - Variable in class org.sdm.spa.ProcessFileRT
Enforce killing remote process(es) after an error or timeout.
cleanUpDir(File) - Static method in class org.kepler.objectmanager.cache.CacheUtil
recursively cleans up the work dir, deleting old files that are no longer needed.
CleanupHSQL1 - Class in org.kepler.util.sql
This class is used to commit outstanding transactions in HSQL v1 databases.
CleanupHSQL1() - Constructor for class org.kepler.util.sql.CleanupHSQL1
 
cleanupString(String) - Method in class ptolemy.data.expr.PtParser
 
clear() - Method in class org.ecoinformatics.seek.querybuilder.DBQueryDef
Clears all the vectors and the where object
clear() - Method in class org.ecoinformatics.seek.querybuilder.DBTableJoin
Clears all of the join items
clear() - Method in class org.ecoinformatics.seek.R.RConsole
 
clear() - Method in class org.kepler.gui.MenuMapper
 
clear() - Method in class org.kepler.objectmanager.cache.DataCacheObject
Clear the dat from this cache item
clear() - Method in class org.kepler.objectmanager.data.db.QBTableauFactory
Remove any editor that may have been associated with this object by a previous call to createEditor().
clear() - Method in class org.kepler.objectmanager.library.LibIndex
Delete all rows in the LIBRARY_INDEX table.
clear() - Method in class org.kepler.objectmanager.library.LibSearch
Delete everything from the database table.
clear() - Method in class org.kepler.provenance.PortConnector
Clear all connections.
clear() - Method in class org.kepler.sms.gui.OntoClassSelectionJPanel
Remove all selected classes.
clear() - Method in class org.kepler.tagging.gui.ExistingTagsPanel
 
clear() - Method in class org.sdm.spa.actors.piw.viz.DetailPanel
 
clear() - Method in class ptolemy.actor.AbstractReceiver
Throw an exception.
clear() - Method in class ptolemy.actor.gui.ArrayOfRecordsPane
Clear the display.
clear() - Method in class ptolemy.actor.gui.ImageTokenEffigy
Clear the token array associated with this effigy.
clear() - Method in class ptolemy.actor.gui.MatrixPane
Clear the display.
clear() - Method in class ptolemy.actor.gui.MatrixTokenTableau
Clear the display.
clear() - Method in class ptolemy.actor.gui.TokenEffigy
Clear the token array associated with this effigy.
clear() - Method in class ptolemy.actor.gui.TokenTableau
Clear the display.
clear() - Method in class ptolemy.actor.IntermediateReceiver
Reset the communication aspect and the receiver that we delegate to.
clear() - Method in class ptolemy.actor.lib.image.ImageTableau
Clear the display.
clear() - Method in class ptolemy.actor.lib.r.RConsole
Clear the console.
clear() - Method in class ptolemy.actor.Mailbox
Clear this receiver of any contained token.
clear() - Method in class ptolemy.actor.QueueReceiver
Clear this receiver of any contained tokens.
clear() - Method in interface ptolemy.actor.Receiver
Clear this receiver of any contained tokens.
clear() - Method in class ptolemy.actor.sched.FixedPointReceiver
Set the status of this receiver to be known and absent.
clear() - Static method in class ptolemy.actor.test.TestActor
Clear the record, and reset the iteration count to zero.
clear() - Static method in class ptolemy.actor.test.TypedTestActor
Clear the record, and reset the iteration count to zero.
clear() - Method in class ptolemy.actor.util.CalendarQueue
Empty the queue, discarding all current information.
clear() - Method in class ptolemy.actor.util.FIFOQueue
Remove all items currently stored in the queue and clear the history queue.
clear() - Method in class ptolemy.actor.util.TotallyOrderedSet
Clear the set by removing all elements.
clear() - Static method in class ptolemy.data.expr.CachedMethod
Clear the cache.
clear() - Method in class ptolemy.domains.de.kernel.DECQEventQueue
Empty the event queue.
clear() - Method in interface ptolemy.domains.de.kernel.DEEventQueue
Empty this event queue.
clear() - Method in class ptolemy.domains.de.kernel.DEReceiver
Clear this receiver of any contained tokens.
clear() - Method in class ptolemy.domains.modal.kernel.FSMReceiver
Clear this receiver of any contained token and set the known status to true.
clear() - Method in class ptolemy.domains.pn.kernel.test.TestSink
Clear the record, and reset the iteration count to zero.
clear() - Method in class ptolemy.domains.sdf.kernel.ArrayFIFOQueue
Clear this queue of any contained objects.
clear() - Method in class ptolemy.domains.sdf.kernel.SDFReceiver
Clear this receiver of any contained tokens.
clear() - Method in class ptolemy.graph.ElementList
Clear all of the elements in this list.
clear() - Method in class ptolemy.graph.LabeledList
Clear all of the elements in this list.
clear() - Method in class ptolemy.gui.JTextAreaExec
Clear the text area, status bar and progress bar.
clear() - Static method in class ptolemy.moml.filter.BackwardCompatibility
Clear the list of filters.
clear() - Static method in class ptolemy.moml.filter.ClassChanges
Clear the map of class renames and the set of class removals.
clear() - Static method in class ptolemy.moml.filter.PortNameChanges
Clear the map of actors with port name changes.
clear() - Static method in class ptolemy.moml.filter.PropertyClassChanges
Clear the map of actors with property class changes.
clear() - Static method in class ptolemy.moml.filter.RemoveClasses
Clear the map of graphical classes to be removed.
clear() - Static method in class ptolemy.moml.filter.RemoveGraphicalClasses
Clear the map of graphical classes to be removed.
clear() - Static method in class ptolemy.moml.filter.RemoveNonPtinyClasses
Clear the map of graphical classes to be removed.
clear(boolean) - Method in class ptolemy.plot.Histogram
Clear the plot of all data points.
clear(boolean) - Method in class ptolemy.plot.Plot
Clear the plot of all data points.
clear(int) - Method in class ptolemy.plot.Plot
Clear the plot of data points in the specified dataset.
clear(boolean) - Method in class ptolemy.plot.PlotBox
If the argument is true, clear the axes.
clear(boolean) - Method in interface ptolemy.plot.PlotBoxInterface
If the argument is true, clear the axes.
clear(boolean) - Method in interface ptolemy.plot.PlotInterface
Clear the plot of all data points.
clear(int) - Method in interface ptolemy.plot.PlotInterface
Clear the plot of data points in the specified dataset.
clear() - Method in interface ptolemy.util.ExecuteCommands
Clear the text area, status bar and progress bar.
clear() - Method in class ptolemy.util.StreamExec
Clear the text area, status bar and progress bar.
clear() - Method in class ptolemy.vergil.debugger.DebugController
Clear the set of actors that are being debugged.
clear() - Method in class ptolemy.vergil.toolbox.TextEditorConfigureFactory
Remove any editor that may have been associated with this object by a previous call to createEditor().
clear() - Method in interface ptolemy.vergil.toolbox.TextEditorFactory
Clear the object.
clear() - Method in class ptolemy.vergil.toolbox.TextEditorTableauFactory
Remove any editor that may have been associated with this object by a previous call to createEditor().
clear() - Method in class ptolemy.vergil.tree.PTreeMenuCreator
Remove all MenuItemFactories from the factory list.
clear() - Method in class ptolemy.vergil.unit.UnitSolverDialog.SolutionListModel
Clear the current set of solutions.
clearActorOrientedClassProviders() - Method in class org.ptolemy.classloading.osgi.OSGiClassLoadingStrategy
Clear the set of registered ActorOrientedClassProviders.
clearAllErrorHighlights() - Method in class ptolemy.vergil.basic.BasicGraphController
Request a change that clears all the error highlights.
clearAllRuns() - Method in class org.kepler.workflowrunmanager.gui.WorkflowRunManagerTableModel
Clear all the runs.
clearAnimation() - Method in class ptolemy.vergil.basic.BasicGraphController
Clear any animation highlight that might currently be active.
clearCache() - Method in class org.kepler.objectmanager.cache.CacheManager
clear the cache of all contents
clearCaches() - Method in class ptolemy.domains.sdf.kernel.CachedSDFScheduler
Clear the schedule cache, cache keys and cache for external rates of this scheduler.
clearCaptions() - Method in class ptolemy.plot.PlotBox
Clear all the captions.
clearCaptions() - Method in interface ptolemy.plot.PlotBoxInterface
Clear all the captions.
clearConfigurations() - Method in class org.kepler.configuration.ConfigurationManager
remove all configurations currently listed and reset the configuration manager back to its un-initialized state.
clearEnvironment - Variable in class ptolemy.matlab.Expression
If true, clear variables and globals before each execution.
clearJTextArea() - Method in class ptolemy.gui.ShellTextArea
Clear the JTextArea and reset the prompt cursor.
clearKARCache() - Method in class org.kepler.kar.KARCacheManager
 
clearLegends() - Method in class ptolemy.plot.PlotBox
Clear all legends.
clearLegends() - Method in interface ptolemy.plot.PlotBoxInterface
Clear all legends.
clearModelElementClassProviders() - Method in class org.ptolemy.classloading.osgi.OSGiClassLoadingStrategy
Clears the set of registered ModelElementClassProviders.
clearNodeScope(Node) - Method in class ptolemy.data.expr.JJTMatrixParserState
 
clearNodeScope(Node) - Method in class ptolemy.data.expr.JJTPtParserState
 
clearProfile() - Method in class ptolemy.domains.pn.kernel.test.TestDirector
Clear the profile accumulated till now.
clearRect(int, int, int, int) - Method in class ptolemy.plot.EPSGraphics
 
clearRenameListeners() - Method in class org.kepler.util.WorkflowRenameManager
Clear the list of WorkflowRenameListener.
clearSearch() - Method in class org.kepler.gui.SimpleSearchUIPane
Clear the search term.
clearSelectedRuns() - Method in class org.kepler.workflowrunmanager.WorkflowRunManager
 
clearSelection() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Clear the selected objects in this frame.
clearServicesList() - Method in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
 
clearShell1() - Method in class org.sdm.spa.gui.DoubleShellTextAreaPanel
Clear the JTextArea and reset the prompt cursor.
clearShell2() - Method in class org.sdm.spa.gui.DoubleShellTextAreaPanel
Clear the JTextArea and reset the prompt cursor.
clearTables() - Method in class org.ecoinformatics.seek.querybuilder.DBTableDesktopPane
Deletes and adds all the necessary frames
clearTopObjectsList() - Method in class ptolemy.moml.MoMLParser
Clear or create the top objects list.
clearUpdaters() - Static method in class org.kepler.gui.KeplerGraphFrame
Clear the set of KeplerGraphFrameUpdaters.
click() - Method in interface org.kepler.tagging.ClickListener
 
ClickListener - Interface in org.kepler.tagging
Created by IntelliJ IDEA.
client - Variable in class org.kepler.objectmanager.repository.EcogridRepository.RegistryClientContainer
 
clientExecErrors - Variable in class org.ecoinformatics.seek.taxon.GetTaxa
 
clientExecErrors - Variable in class org.sdm.spa.MessageBasedWebService
Deprecated.
It outputs the errors if any occured when actor is executing.
clientExecErrors - Variable in class org.sdm.spa.SoaplabServiceStarter
Errors encountered while parsing WSDL/setting set_<name> operations
clientExecErrors - Variable in class org.sdm.spa.WebService
It outputs the errors if any occured when actor is executing.
CLIP - Static variable in class ptolemy.math.Overflow
Singleton implementing Saturate overflow strategy.
clipRect(int, int, int, int) - Method in class ptolemy.plot.EPSGraphics
 
Clock - Class in ptolemy.actor.lib
Deprecated.
Use DiscreteClock.
Clock(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Clock
Deprecated.
Construct an actor with the specified container and name.
clockDrift - Variable in class ptolemy.actor.LocalClock
The drift of the local clock with respect to the environment clock.
CLOCKWISE - Static variable in class ptolemy.vergil.toolbox.RotateOrFlipPorts
Indicator to rotate clockwise.
clone() - Method in class com.jgoodies.forms.layout.CellConstraints
Creates a copy of this cell constraints object.
clone(Workspace) - Method in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource
Clone the Eml200DataSource into the specified workspace.
clone(Workspace) - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.ResultRecord
Clone the ResultRecord into the specified workspace.
clone(Workspace) - Method in class org.ecoinformatics.seek.R.RExpression
Override the base class to set type constraints.
clone(Workspace) - Method in class org.ecoinformatics.seek.R.RExpression2
Override the base class to set type constraints.
clone(Workspace) - Method in class org.geon.BinaryFileReader
Clone the actor into the specified workspace.
clone(Workspace) - Method in class org.geon.BinaryFileWriter
Clone the actor into the specified workspace.
clone(Workspace) - Method in class org.geon.DatabaseQuery
 
clone() - Method in class org.geon.DBConnectionToken.DBConnectionType
Return this, that is, return the reference to this object.
clone(Workspace) - Method in class org.geon.FileToArray
Clone the actor into the specified workspace.
clone(Workspace) - Method in class org.geon.FileToString
Clone the actor into the specified workspace.
clone(Workspace) - Method in class org.geon.Scp
 
clone(Workspace) - Method in class org.kepler.actor.gui.XMLViewer
Clone the actor into the specified workspace.
clone(Workspace) - Method in class org.kepler.cloudsharing.actor.ShareToCloud
Clone this actor into the specified workspace.
clone(Workspace) - Method in class org.kepler.data.conversion.StringToN
 
clone(Workspace) - Method in class org.kepler.data.datasource.dataturbine.DataTurbine
Clone the actor into the specified workspace.
clone(Workspace) - Method in class org.kepler.data.datasource.dataturbine.DataTurbineWriter
Clone the actor into the specified workspace.
clone(Workspace) - Method in class org.kepler.data.netcdf.NetCDFReader
Clone this actor into the specified workspace.
clone(Workspace) - Method in class org.kepler.data.netcdf.NetCDFWriter
Clone this actor into the specified workspace.
clone(Workspace) - Method in class org.kepler.date.CreateDate
Clone the actor into the specified workspace.
clone(Workspace) - Method in class org.kepler.ddp.actor.ExecutionChoice
Override the base class to ensure that the member fields are initialized.
clone(Workspace) - Method in class org.kepler.ddp.actor.ExecutionChoiceDirector
Clone this director into the specified workspace.
clone(Workspace) - Method in class org.kepler.ddp.actor.pattern.AtomicPatternActor
Clone this actor into the specified workspace.
clone(Workspace) - Method in interface org.kepler.ddp.actor.pattern.DDPPatternActor
Clone the actor into a workspace.
clone(Workspace) - Method in class org.kepler.ddp.actor.pattern.stub.CoGroupInput
Clone the actor into the specified workspace.
clone(Workspace) - Method in class org.kepler.ddp.actor.pattern.stub.CrossInput
Clone the actor into the specified workspace.
clone(Workspace) - Method in class org.kepler.ddp.actor.pattern.stub.MapInput
Clone the actor into the specified workspace.
clone(Workspace) - Method in class org.kepler.ddp.actor.pattern.stub.MatchInput
Clone the actor into the specified workspace.
clone(Workspace) - Method in class org.kepler.ddp.actor.pattern.stub.ReduceInput
Clone the actor into the specified workspace.
clone(Workspace) - Method in class org.kepler.ddp.actor.pattern.stub.StubSinkActor
Clone the actor into the specified workspace.
clone(Workspace) - Method in class org.kepler.ddp.actor.pattern.stub.StubSourceActor
Clone the actor into the specified workspace.
clone(Workspace) - Method in class org.kepler.ddp.director.DDPDirector
Clone the object into the specified workspace.
clone() - Method in class org.kepler.ddp.director.DDPEngine
Clone the engine into the containing director's workspace.
clone(Workspace) - Method in class org.kepler.ddp.director.DDPEngine
Clone the object into the specified workspace.
clone(Workspace) - Method in class org.kepler.gis.actor.bbox.CreateBoundingBox
 
clone(Workspace) - Method in class org.kepler.gis.actor.CRSActor
Clone the actor into the specified workspace.
clone(Workspace) - Method in class org.kepler.gis.actor.landscape.CreateLandscape
Clone this actor into the specified workspace.
clone(Workspace) - Method in class org.kepler.gis.actor.VectorFilter
Clone the actor into the specified workspace.
clone(Workspace) - Method in class org.kepler.gis.actor.VectorSort
Clone this object into the specified workspace.
clone(Workspace) - Method in class org.kepler.gis.actor.windninja.ATMCombineFiles
 
clone() - Method in class org.kepler.gis.data.BoundingBoxToken.BoundingBoxType
 
clone() - Method in class org.kepler.gis.data.GISToken.GISType
 
clone() - Method in class org.kepler.gis.data.RasterToken.RasterType
 
clone() - Method in class org.kepler.gis.data.VectorToken.VectorType
 
clone(Workspace) - Method in class org.kepler.gui.frame.MultiCompositeTableau
Clone the object into the specified workspace.
clone(Workspace) - Method in class org.kepler.hadoop.actor.HDFSLoader
Clone the actor into the specified workspace.
clone(Workspace) - Method in class org.kepler.hadoop.actor.HDFSRemover
Clone the actor into the specified workspace.
clone(Workspace) - Method in class org.kepler.hadoop.actor.HDFSUnLoader
Clone the actor into the specified workspace.
clone(Workspace) - Method in class org.kepler.hadoop.actor.HDFSWriter
Clone the actor into the specified workspace.
clone(Workspace) - Method in class org.kepler.hadoop.director.HadoopEngine
Clone the HadoopEngine into the specified workspace.
clone(Configuration) - Method in class org.kepler.hadoop.io.TaggedValue
 
clone(Workspace) - Method in class org.kepler.moml.DependencyAttribute
Clone the object into the specified workspace.
clone(Workspace) - Method in class org.kepler.moml.NamedObjId
Clone the object into the specified workspace.
clone(Workspace) - Method in class org.kepler.moml.PortAttribute
Clone the object into the specified workspace.
clone(Workspace) - Method in class org.kepler.provenance.ProvenanceRecorder
Clone the ProvenanceRecorder into a specified workspace.
clone(Workspace) - Method in class org.kepler.scriptengine.Java
Clone the actor into the specified workspace.
clone(Workspace) - Method in class org.kepler.scriptengine.ScriptEngineActor
Clone the actor into the specified workspace.
clone() - Method in class org.kepler.sms.SemanticTypeManager
Create a clone of this manager
clone(Workspace) - Method in class org.kepler.spark.actor.SparkBaseActor
Clone this object into the specified workspace.
clone(Workspace) - Method in class org.kepler.spark.director.SparkEngine
Clone the SparkEngine into the specified workspace.
clone(Workspace) - Method in class org.kepler.stratosphere.director.StratosphereEngine
Clone the StratosphereEngine into the specified workspace.
clone(Workspace) - Method in class org.kepler.webview.actor.WebView
Clone the actor into the specified workspace.
clone(Workspace) - Method in class org.kepler.webview.actor.WebViewAttribute
Clone the actor into the specified workspace.
clone() - Method in class org.kepler.webview.server.app.AbstractApp
 
clone() - Method in interface org.kepler.webview.server.app.App
 
clone(Workspace) - Method in class org.kepler.webview.server.WebViewId
Clone the WebViewId into the specified workspace.
clone() - Method in class org.mlc.swing.layout.ComponentDef
When dragging from the palette we need a clone rather than modify the original.
clone(Workspace) - Method in class org.sdm.spa.DatabaseWriter
 
clone(Workspace) - Method in class org.sdm.spa.gui.DoubleShellTAPEffigy
Clone the object into the specified workspace.
clone(Workspace) - Method in class org.sdm.spa.gui.UserInteractiveShell
Clone the actor into the specified workspace.
clone(Workspace) - Method in class org.sdm.spa.TextualInteractionShell
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.AbstractInitializableAttribute
Clone the attribute.
clone(Workspace) - Method in class ptolemy.actor.AtomicActor
Clone this actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.CompositeActor
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.Director
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.gui.AbstractPlaceableActor
Clone the actor.
clone(Workspace) - Method in class ptolemy.actor.gui.exec.ExecShellEffigy
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.gui.ExpressionShellEffigy
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.gui.ModelRepaintController
Clone the controller into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.gui.properties.GUIProperty
Clone the property into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.gui.ptjacl.TclShellEffigy
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.gui.PtolemyEffigy
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.gui.python.PythonShellEffigy
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.gui.SizeAttribute
Clone the attribute into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.gui.Tableau
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.gui.WindowPropertiesAttribute
Clone the attribute into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.IOPort
Clone this port into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.IORelation
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.LazyTypedCompositeActor
Clone the library into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.AbsoluteValue
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.Accumulator
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.AddSubtract
Override the base class to set type constraints on the ports.
clone(Workspace) - Method in class ptolemy.actor.lib.ArrayAccumulate
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.ArrayAppend
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.ArrayAverage
Override the base class to set type constraints.
clone(Workspace) - Method in class ptolemy.actor.lib.ArrayContains
Override the base class to set type constraints.
clone(Workspace) - Method in class ptolemy.actor.lib.ArrayElement
Override the base class to set type constraints.
clone(Workspace) - Method in class ptolemy.actor.lib.ArrayElementAsMatrix
Override the base class to set type constraints.
clone(Workspace) - Method in class ptolemy.actor.lib.ArrayExtract
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.ArrayLength
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.ArrayMaximum
Override the base class to set type constraints.
clone(Workspace) - Method in class ptolemy.actor.lib.ArrayMinimum
Override the base class to set type constraints.
clone(Workspace) - Method in class ptolemy.actor.lib.ArrayPeakSearch
Override the base class to set type constraints.
clone(Workspace) - Method in class ptolemy.actor.lib.ArrayRemoveElement
Override the base class to set type constraints.
clone(Workspace) - Method in class ptolemy.actor.lib.ArraySort
Override the base class to set type constraints.
clone(Workspace) - Method in class ptolemy.actor.lib.ArraySum
Override the base class to set type constraints.
clone(Workspace) - Method in class ptolemy.actor.lib.ArrayToElements
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.ArrayToMatrix
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.ArrayUpdate
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.Assert
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.BooleanSelect
Clone this actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.BooleanSwitch
Clone this actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.CatchExceptionAttribute
Clone the attribute into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.Clock
Deprecated.
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.comm.ConvolutionalCoder
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.comm.HammingCoder
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.comm.HammingDecoder
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.comm.HuffmanBasic
Override the base class to set type constraints.
clone(Workspace) - Method in class ptolemy.actor.lib.comm.HuffmanCoder
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.comm.HuffmanDecoder
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.comm.Slicer
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.comm.ViterbiDecoder
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.Commutator
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.ComputeHistogram
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.ConfigurationSelect
Clone this actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.ConfigurationSwitch
Clone this actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.Const
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.conversions.BooleanToAnything
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.conversions.DoubleToFix
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.conversions.FixToFix
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.conversions.Round
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.DB
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.Dictionary
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.DiscreteClock
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.DiscreteRandomSource
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.Distributor
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.ElementsToArray
Override the base class to set type constraints.
clone(Workspace) - Method in class ptolemy.actor.lib.ExceptionManager
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.Expression
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.FileWriter
Clone the actor.
clone(Workspace) - Method in class ptolemy.actor.lib.gem5.Gem5Wrapper
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.GradientAdaptiveLattice
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.gui.Display
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.gui.EventButton
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.gui.InteractiveDialog
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.gui.InteractiveShell
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.gui.MatrixViewer
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.gui.PlotterBase
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.gui.SketchedSource
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.gui.SliderSource
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.gui.TimedPlotter
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.hoc.ApplyFilterOverArray
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.hoc.ApplyFunction
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.hoc.Case
Override the base class to ensure that the _default member points to the default refinement.
clone(Workspace) - Method in class ptolemy.actor.lib.hoc.CatchUpComposite
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.hoc.IterateOverArray
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.hoc.MirrorPort
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.hoc.MobileModel
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.hoc.ModelReference
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.hoc.MultiInstanceComposite
Clone a "master copy" of this actor into the specified workspace - note that this is not used for creating the additional instances.
clone(Workspace) - Method in class ptolemy.actor.lib.hoc.RealTimeComposite
Deprecated.
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.hoc.ReflectComposite
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.hoc.ThreadedComposite
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.IIR
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.image.ImageDisplay
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.Interpolator
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.io.CSVWriter
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.io.ExpressionReader
Deprecated.
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.io.LineReader
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.io.LineWriter
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.Lattice
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.Limiter
Override the base class to set type constraints.
clone(Workspace) - Method in class ptolemy.actor.lib.LookupTable
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.MathFunction
Deprecated.
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.MatrixToArray
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.Maximum
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.MicrostepDelay
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.Minimum
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.MovingMaximum
Deprecated.
Clone this actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.NonStrictTest
Override the base class to set type constraints.
clone(Workspace) - Method in class ptolemy.actor.lib.OrderedMerge
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.PoissonClock
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.Publisher
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.Pulse
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.python.PythonScript
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.Quantizer
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.r.RExpression
Override the base class to set type constraints.
clone(Workspace) - Method in class ptolemy.actor.lib.r.RExpression2
Override the base class to set type constraints.
clone(Workspace) - Method in class ptolemy.actor.lib.Ramp
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.RandomSource
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.RecordAssembler
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.RecordDisassembler
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.RecordUpdater
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.RecursiveLattice
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.ResettableTimer
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.RunningMaximum
Clone this actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.RunningMinimum
Clone this actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.Sampler
Clone this actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.Scale
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.Sequence
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.Sequencer
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.SequentialClock
Deprecated.
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.SetVariable
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.SingleEvent
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.Sleep
Override the base class to set type constraints.
clone(Workspace) - Method in class ptolemy.actor.lib.string.StringMatches
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.string.StringReplace
Clone the attribute into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.Subscriber
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.TimeDelay
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.TrigFunction
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.tutorial.SimpleALU
Override the base class to set type constraints.
clone(Workspace) - Method in class ptolemy.actor.lib.tutorial.StaticALU
Override the base class to set type constraints.
clone(Workspace) - Method in class ptolemy.actor.lib.UnionDisassembler
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.UnionMerge
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.lib.WallClockTime
Override the base class to set the type constraints on the ports.
clone(Workspace) - Method in class ptolemy.actor.lib.xslt.XSLTransformer
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.LocalClock
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.parameters.FilePortParameter
Clone the attribute into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.parameters.ParameterMirrorPort
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.parameters.ParameterPort
Clone the port.
clone(Workspace) - Method in class ptolemy.actor.parameters.PortParameter
Clone the parameter.
clone(Workspace) - Method in class ptolemy.actor.parameters.SharedParameter
Override the base class to register the object, since setName() will not be called.
clone(Workspace) - Method in class ptolemy.actor.process.CompositeProcessDirector
Clone the director into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.process.ProcessDirector
Clone the director into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.PubSubPort
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.sched.FixedPointDirector
Clone the director into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.sched.Scheduler
Clone the scheduler into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.sched.StaticSchedulingDirector
Clone the object into the specified workspace.
clone() - Method in class ptolemy.actor.TypedAtomicActor
clone() is not supported, call clone(Workspace workspace) instead.
clone(Workspace) - Method in class ptolemy.actor.TypedAtomicActor
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.actor.TypedIOPort
Clone this port into the specified workspace.
clone() - Method in class ptolemy.actor.util.FIFOQueue
Clone this queue.
clone() - Method in class ptolemy.actor.util.test.FIFOQueueTest
Return a clone of this object.
clone(Workspace) - Method in class ptolemy.component.ComponentActor
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.component.MethodCallPort
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.data.expr.AbstractInitializableParameter
Clone the attribute.
clone() - Method in class ptolemy.data.expr.ASTPtFunctionDefinitionNode
Clone the parse tree node by invoking the clone() method of the base class.
clone() - Method in class ptolemy.data.expr.ASTPtProductNode
Clone the parse tree node by invoking the clone() method of the base class.
clone() - Method in class ptolemy.data.expr.ASTPtRootNode
Clone the parse tree node by invoking the clone() method of the base class (java.lang.Object).
clone() - Method in class ptolemy.data.expr.ASTPtSumNode
Clone the parse tree node by invoking the clone() method of the base class.
clone(Workspace) - Method in class ptolemy.data.expr.ConstraintMonitor
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.data.expr.FileParameter
Clone the attribute into the specified workspace.
clone(Workspace) - Method in class ptolemy.data.expr.Parameter
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.data.expr.Variable
Clone the variable.
clone() - Method in class ptolemy.data.type.ActorType
Return this, that is, return the reference to this object.
clone() - Method in class ptolemy.data.type.ArrayType
Return a deep copy of this ArrayType if it is a variable, or itself if it is a constant.
clone() - Method in class ptolemy.data.type.BaseType
Return this, that is, return the reference to this object.
clone() - Method in class ptolemy.data.type.FixType
Return this, that is, return the reference to this object.
clone() - Method in class ptolemy.data.type.FunctionType
Return a deep copy of this FunctionType if it is a variable, or itself if it is a constant.
clone() - Method in class ptolemy.data.type.MatrixType
Return this, that is, return the reference to this object.
clone() - Method in class ptolemy.data.type.ObjectType
Return a deep clone of this type.
clone() - Method in class ptolemy.data.type.RecordType
Return a deep copy of this RecordType if it is a variable, or itself if it is a constant.
clone() - Method in class ptolemy.data.type.StructuredType
Return a deep copy of this StructuredType.
clone() - Method in class ptolemy.data.type.test.TestToken.TestType
Return this, that is, return the reference to this object.
clone() - Method in class ptolemy.data.type.TupleType
Return a deep copy of this TupleType if it is a variable, or itself if it is a constant.
clone() - Method in interface ptolemy.data.type.Type
Return a deep clone of this type.
clone() - Method in class ptolemy.data.type.UnionType
Return a deep copy of this UnionType if it is a variable, or itself if it is a constant.
clone(Workspace) - Method in class ptolemy.domains.continuous.kernel.ContinuousDirector
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.continuous.kernel.ContinuousIntegrator
Clone this actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.continuous.kernel.HybridModalDirector
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.continuous.lib.ContinuousTimeDelay
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.continuous.lib.EventSource
Deprecated.
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.continuous.lib.LevelCrossingDetector
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.continuous.lib.PeriodicSampler
Clone this actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.ddf.kernel.DDFDirector
Clone the director into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.ddf.lib.DDFBooleanSelect
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.ddf.lib.DDFSelect
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.de.kernel.DEDirector
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.de.lib.AverageOverTime
Clone this actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.de.lib.Derivative
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.de.lib.Inhibit
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.de.lib.Integrator
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.de.lib.Merge
Clone this actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.de.lib.MostRecent
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.de.lib.PID
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.de.lib.Queue
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.de.lib.Server
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.de.lib.SuppressSimultaneousEvents
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.de.lib.TimeCompare
Clone this actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.de.lib.TimedDelay
Deprecated.
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.de.lib.Timer
Deprecated.
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.de.lib.VariableDelay
Deprecated.
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.de.lib.WaitingTime
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.modal.kernel.AbstractActionsAttribute
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.modal.kernel.Configurer
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.modal.kernel.FSMActor
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.modal.kernel.FSMDirector
Clone the director into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.modal.kernel.FSMTransitionParameter
Clone the transition into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.modal.kernel.NonStrictFSMDirector
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.modal.kernel.State
Clone the state into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.modal.kernel.Transition
Clone the transition into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.modal.modal.Case
Deprecated.
Override the base class to ensure that the _default member points to the default refinement.
clone(Workspace) - Method in class ptolemy.domains.modal.modal.ModalModel
Override the base class to ensure that the _controller private variable is reset to the controller of the cloned object.
clone(Workspace) - Method in class ptolemy.domains.pn.kernel.NondeterministicMerge
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.pn.kernel.PNDirector
Clone the director into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.pn.kernel.TimedPNDirector
Clone the director into the specified workspace.
clone() - Method in class ptolemy.domains.sdf.kernel.ArrayFIFOQueue
Clone this queue.
clone(Workspace) - Method in class ptolemy.domains.sdf.kernel.SDFDirector
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.sdf.kernel.SDFIOPort
Deprecated.
Clone the port into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.sdf.kernel.SDFScheduler
Clone the scheduler into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.sdf.kernel.test.SDFTestConsumer
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.sdf.kernel.test.SDFTestRamp
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.sdf.kernel.test.SDFTestZeroRate1
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.sdf.kernel.test.SDFTestZeroRate2
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.sdf.lib.ArrayToSequence
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.sdf.lib.Autocorrelation
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.sdf.lib.CountTrues
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.sdf.lib.DelayLine
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.sdf.lib.DotProduct
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.sdf.lib.FIR
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.sdf.lib.LineCoder
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.sdf.lib.LMSAdaptive
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.sdf.lib.MatrixToSequence
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.sdf.lib.SampleDelay
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.sdf.lib.SequenceToArray
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.sdf.lib.SequenceToMatrix
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.sdf.lib.VariableFIR
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.sdf.lib.VariableLattice
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.sdf.lib.VariableRecursiveLattice
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.sdf.lib.vq.HTVQEncode
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.sdf.lib.vq.ImageContrast
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.domains.sdf.lib.vq.VQDecode
Clone the actor into the specified workspace.
clone() - Method in class ptolemy.domains.sdf.optimize.lib.DummyFrame
Clone the DummyFrame.
clone() - Method in class ptolemy.graph.Graph
Return a clone of this graph.
clone(Workspace) - Method in class ptolemy.kernel.attributes.FileAttribute
Deprecated.
Clone the attribute into the specified workspace.
clone(Workspace) - Method in class ptolemy.kernel.attributes.URIAttribute
Clone the attribute into the specified workspace.
clone(Workspace) - Method in class ptolemy.kernel.attributes.VersionAttribute
Clone the attribute into the specified workspace.
clone(Workspace) - Method in class ptolemy.kernel.ComponentEntity
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.kernel.ComponentPort
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.kernel.ComponentRelation
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.kernel.CompositeEntity
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.kernel.Entity
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.kernel.InstantiableNamedObj
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.kernel.Port
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.kernel.Relation
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.kernel.util.Attribute
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.kernel.util.ConfigurableAttribute
Clone the attribute.
clone(Workspace) - Method in class ptolemy.kernel.util.DecoratorAttributes
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.kernel.util.Location
Clone the location into the specified workspace.
clone() - Method in class ptolemy.kernel.util.NamedList
Build an independent copy of the list.
clone() - Method in class ptolemy.kernel.util.NamedObj
Clone the object into the current workspace by calling the clone() method that takes a Workspace argument.
clone(Workspace) - Method in class ptolemy.kernel.util.NamedObj
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.kernel.util.StringAttribute
Clone the object into the specified workspace.
clone() - Method in class ptolemy.math.FixPoint
Return this, that is, return the reference to this object.
clone() - Method in class ptolemy.math.Overflow
Return this, that is, return the reference to this object.
clone() - Method in class ptolemy.math.Precision
Return this, that is, return the reference to this object.
clone() - Method in class ptolemy.math.Quantization
Return this, that is, return the reference to this object.
clone() - Method in class ptolemy.math.Rounding
Return this, that is, return the reference to this object.
clone(Workspace) - Method in class ptolemy.matlab.Expression
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.moml.EntityLibrary
Clone the library into the specified workspace.
clone(Workspace) - Method in class ptolemy.moml.MoMLModelAttribute
Return a clone of this model attribute.
clone(Workspace) - Method in class ptolemy.moml.ParserAttribute
Clone the attribute into the specified workspace.
clone(Workspace) - Method in class ptolemy.vergil.actor.lib.LEDMatrix
Clone this actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.vergil.actor.lib.ModelDisplay
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.vergil.actor.lib.MonitorImage
Clone the actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.vergil.actor.lib.VisualModelReference
Clone this actor into the specified workspace.
clone(Workspace) - Method in class ptolemy.vergil.basic.export.web.Title
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.vergil.basic.export.web.WebContent
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.vergil.icon.CopyCatIcon
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.vergil.icon.DynamicEditorIcon
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.vergil.icon.EditorIcon
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.vergil.icon.ImageIcon
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.vergil.icon.ShapeIcon
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.vergil.icon.SVGIcon
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.vergil.icon.TextIcon
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.vergil.icon.UpdatedValueIcon
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.vergil.icon.XMLIcon
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.vergil.kernel.attributes.AbstractTextAttribute
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.vergil.kernel.attributes.ArcAttribute
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.vergil.kernel.attributes.ArrowAttribute
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.vergil.kernel.attributes.EllipseAttribute
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.vergil.kernel.attributes.FilledShapeAttribute
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.vergil.kernel.attributes.ImageAttribute
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.vergil.kernel.attributes.LineAttribute
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.vergil.kernel.attributes.RectangleAttribute
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.vergil.kernel.attributes.ResizablePolygonAttribute
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.vergil.kernel.attributes.ShapeAttribute
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.vergil.pdfrenderer.PDFAttribute
Clone the object into the specified workspace.
clone(Workspace) - Method in class ptolemy.vergil.pdfrenderer.PDFIcon
Clone the object into the specified workspace.
cloneAs(Graph) - Method in class ptolemy.graph.Graph
Return a clone of this graph in the form of the argument graph type (i.e., the run-time type of the returned graph is that of the argument graph).
CloneTest - Class in ptolemy.actor.parameters.test
Clone an actor and compare the type constraints with the master.
CloneTest() - Constructor for class ptolemy.actor.parameters.test.CloneTest
 
cloneWeight(boolean) - Method in interface ptolemy.graph.analysis.analyzer.MirrorTransformer
Changes the status of the graph returned by the MirrorTransformer.mirror() method.
cloneWeight(boolean) - Method in class ptolemy.graph.analysis.MirrorTransformation
Changes the status of the graph returned by the MirrorTransformation.mirror() method.
cloneWeight(boolean) - Method in class ptolemy.graph.analysis.strategy.MirrorTransformerStrategy
Changes the status of the graph returned by the MirrorTransformerStrategy.mirror() method.
close() - Method in class org.ecoinformatics.seek.dataquery.HsqlDataQueryAction
Close the underlying database resources and invalidate object.
close() - Method in class org.kepler.bio.hadoop.input.FASTAFileReader
Close the underlying stream.
close() - Method in class org.kepler.bio.hadoop.input.FASTARecordReader
 
close() - Method in class org.kepler.bio.stratosphere.input.FASTAInputFormat
Closes the input by releasing all buffers and closing the file input stream.
close() - Method in class org.kepler.bio.stratosphere.input.FASTAInputFormatBySize
Closes the input by releasing all buffers and closing the file input stream.
close() - Method in class org.kepler.hadoop.io.input.DelimitedTextFileReader
Close the underlying stream.
close() - Method in class org.kepler.hadoop.io.input.DelimitedTextRecordReader
 
close() - Method in class org.kepler.hadoop.io.input.DuplicatedTextRecordReader
 
close() - Method in class org.kepler.hadoop.io.input.FileContentRecordReader
 
close() - Method in class org.kepler.hadoop.io.input.FilePathRecordReader
 
close() - Method in class org.kepler.hadoop.io.input.MultiLineRecordReader
 
close() - Method in class org.kepler.hadoop.io.input.MultipleLineReader
Close the underlying stream.
close() - Method in class org.kepler.hadoop.io.input.TokenRecordReader
Close the reader.
close(TaskAttemptContext) - Method in class org.kepler.hadoop.io.output.TokenRecordWriter
Close the record writer.
close(TaskAttemptContext) - Method in class org.kepler.hadoop.io.output.ValueOnlyOutputWriter
 
close() - Method in class org.kepler.provenance.DefaultQuery
 
close() - Method in class org.kepler.scriptengine.java.MemoryJavaFileManager
 
close() - Method in class org.kepler.stratosphere.io.input.TokenInputFormat
Close an input split.
close() - Method in class org.kepler.stratosphere.io.output.NullOutputFormat
 
close() - Method in class org.kepler.stratosphere.io.output.TokenOutputFormat
Method that marks the end of the life-cycle of parallel output instance.
close() - Method in class org.kepler.stratosphere.stub.KeplerCoGroupStub
Free resources.
close() - Method in class org.kepler.stratosphere.stub.KeplerCrossStub
Free resources.
close() - Method in class org.kepler.stratosphere.stub.KeplerMapStub
Free resources.
close() - Method in class org.kepler.stratosphere.stub.KeplerMatchStub
Free resources.
close() - Method in class org.kepler.stratosphere.stub.KeplerReduceStub
Free resources.
close() - Method in class org.kepler.stratosphere.stub.ScriptEngineMapStub
 
close() - Method in class org.kepler.stratosphere.stub.ScriptEngineReduceStub
 
close() - Method in class org.kepler.webview.server.app.AbstractApp
 
close() - Method in interface org.kepler.webview.server.app.App
 
close() - Method in class ptolemy.actor.gui.CompositeActorApplication
Close any ModeFrames opened in processArgs().
close() - Method in class ptolemy.actor.gui.PortConfigurerDialog
Close this dialog.
close() - Method in class ptolemy.actor.gui.Tableau
Close this tableau by calling dispose() on the associated frame, or if the associated frame is an instance of TableauFrame, by calling _close() on it.
close() - Method in class ptolemy.actor.gui.test.SimpleTableau
Close this tableau.
close() - Method in class ptolemy.actor.parameters.FilePortParameter
Close the file.
close() - Method in class ptolemy.data.expr.FileParameter
Close the file.
close() - Method in class ptolemy.gui.Top
Close the window, prompting the user to save changes if there have been any.
close() - Method in class ptolemy.kernel.attributes.FileAttribute
Deprecated.
Close the file.
close() - Method in interface ptolemy.kernel.attributes.FileOrURLAccessor
Close the file.
close() - Method in class ptolemy.kernel.util.LoggerListener
Close the file handler.
close(double, double) - Static method in class ptolemy.math.SignalProcessing
Return true if the first argument is close to the second (within EPSILON, where EPSILON is a static public variable of this class).
close(long[]) - Method in class ptolemy.matlab.Engine
Close a connection to a matlab engine.
close() - Method in class ptolemy.vergil.actor.ActorGraphTableau
Invoke the close() method of the superclass and optionally print a debugging message.
closeAll() - Static method in class org.kepler.io.MappedLog
Close all opened log file in a synchronized way.
closeAll() - Static method in class org.kepler.io.SharedLog
Close all opened log file in a synchronized way.
closeAll() - Static method in class org.kepler.loader.util.Screenshot
Close all tableaux, which will shutdown Kepler.
closeAllEffigies() - Static method in class org.kepler.ddp.director.DDPEngine
Close all the effigies created.
closeAllEffigies() - Static method in class org.kepler.provenance.RecordPlayer
Close any effigies created while replaying workflows.
closeAllTableaux() - Static method in class ptolemy.actor.gui.Configuration
Close all the tableaux.
closeAllWhenDone(boolean) - Static method in class org.kepler.loader.util.Screenshot
Set if should close all tableaux and shutdown after last screenshot.
closeAtEnd - Variable in class org.kepler.actor.ssh.SshSession
Specifying whether actual connection to the host should be closed when the workflow terminates.
CLOSEBRACE - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
CLOSEBRACKET - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
closeColor - Variable in class ptolemy.vergil.icon.ConstraintMonitorIcon
Color of the box to use when the constraint is close to the threshold.
closeConnection() - Method in interface org.kepler.ssh.ExecInterface
 
closeConnection() - Method in class org.kepler.ssh.GsiSshExec
 
closeConnection() - Method in class org.kepler.ssh.LocalExec
 
closeConnection() - Method in class org.kepler.ssh.RemoteExec
 
closeConnection() - Method in class org.kepler.ssh.SshExec
Close the connection This should be called only when there is no more use of the connection to this user@host Important: the ssh session remains opened as long as this method is not called, therefore, the the whole java application will hang at the end until this method is called.
closeConnection(SRBFileSystem) - Static method in class org.srb.SRBUtil
 
closeDatabase() - Method in class org.kepler.objectmanager.lsid.LSIDGenerator
Close the LSID database if opened.
closeDataStores() - Static method in class org.kepler.gis.util.VectorUtilities
Close all data stores opened in this thread while reading files.
CloseDBConnection - Class in org.geon
This actor disconnect from a database.
CloseDBConnection(CompositeEntity, String) - Constructor for class org.geon.CloseDBConnection
Construct an actor with the given container and name.
closeFile() - Method in class ptolemy.media.javasound.SoundReader
Close the file at the specified URL.
closeFile() - Method in class ptolemy.media.javasound.SoundWriter
Open a the file specified in the constructor for writing, write the accumulated audio samples (obtained via putSamples()) to the file specified in the constructor, and close the file.
closeFraction - Variable in class ptolemy.vergil.icon.ConstraintMonitorIcon
Fraction of the threshold that is to be considered close to the threshold.
CloseListener - Interface in ptolemy.gui
This is an interface for listeners that need to be informed when a window closes.
closeModelWithoutSavingOrExiting(CompositeEntity) - Static method in class ptolemy.actor.gui.ConfigurationApplication
Close the model without saving or exiting.
closeNodeScope(Node, int) - Method in class ptolemy.data.expr.JJTMatrixParserState
 
closeNodeScope(Node, boolean) - Method in class ptolemy.data.expr.JJTMatrixParserState
 
closeNodeScope(Node, int) - Method in class ptolemy.data.expr.JJTPtParserState
 
closeNodeScope(Node, boolean) - Method in class ptolemy.data.expr.JJTPtParserState
 
closeOnPostfire - Variable in class ptolemy.vergil.actor.lib.VisualModelReference
The value of this string parameter determines what close action happens in the postfire() method.
CLOSEPAREN - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
closeReaders() - Static method in class org.kepler.gis.util.RasterUtilities
Close all readers opened by getReader() and getCoverage().
closeSentinelModel() - Static method in class ptolemy.vergil.basic.layout.kieler.test.junit.KielerJUnitTest
Reset the ptolemy.ptII.doNotExit property to the previous value.
closeTableaux() - Method in class ptolemy.actor.gui.Effigy
Close all tableaux contained by this effigy, and by any effigies it contains.
CLOSEUNION - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
closeVertx() - Static method in class ptolemy.moml.MoMLSimpleApplication
If the VertxHelperBase class is present, then invoke the closeVertx() method so that this process does not wait around for the Vert.x threads.
closeWindows() - Method in class org.kepler.objectmanager.data.db.QBEditor
For cancel button
closing() - Method in class org.kepler.gui.popups.LibraryPopupListener
 
closing() - Method in class org.kepler.gui.popups.OutlinePopupListener
 
closing() - Method in class org.kepler.gui.SearchUIJPanel
 
closing() - Method in class org.kepler.gui.SimpleSearchUIPane
 
cloudCover - Variable in class org.kepler.gis.actor.farsite.GenerateWindFile
Percentage of cloud cover.
CloudSharingConfigureAction - Class in org.kepler.cloudsharing.gui
An action that uploads workflow results to the cloud.
CloudSharingConfigureAction(KeplerGraphFrame) - Constructor for class org.kepler.cloudsharing.gui.CloudSharingConfigureAction
 
cls - Variable in class org.kepler.tagging.gui.CBItems.ExistingConceptCBItem
 
ClustalWSeqAlign - Class in org.cipres.kepler
This actor calls ClustalW for Sequence Alignment.
ClustalWSeqAlign(CompositeEntity, String) - Constructor for class org.cipres.kepler.ClustalWSeqAlign
Construct ClustalWSeqAlign source with the given container and name.
clusterIdCol - Variable in class org.kepler.spark.mllib.SantaAnaDetect
Name of the cluster ID column to append
clusterNodes() - Method in interface ptolemy.graph.analysis.analyzer.ClusterNodesTransformer
Return the clustered Graph.
clusterNodes() - Method in class ptolemy.graph.analysis.ClusterNodesAnalysis
Return the clustered Graph.
clusterNodes() - Method in class ptolemy.graph.analysis.strategy.ClusterNodesTransformerStrategy
Return the clustered Graph.
ClusterNodesAnalysis - Class in ptolemy.graph.analysis
Given a collection of nodes in a graph, replace the subgraph induced by the nodes with a single node N.
ClusterNodesAnalysis(Graph, Collection, Node) - Constructor for class ptolemy.graph.analysis.ClusterNodesAnalysis
Construct an instance of this class for a given graph.
ClusterNodesAnalysis(ClusterNodesTransformer) - Constructor for class ptolemy.graph.analysis.ClusterNodesAnalysis
Construct an instance of this class with a given analyzer.
ClusterNodesTransformer - Interface in ptolemy.graph.analysis.analyzer
Base interface for cluster transformers for graphs.
ClusterNodesTransformerStrategy - Class in ptolemy.graph.analysis.strategy
Strategy for cluster transformers for graphs.
ClusterNodesTransformerStrategy(Graph, Collection, Node) - Constructor for class ptolemy.graph.analysis.strategy.ClusterNodesTransformerStrategy
Construct a clusterer for a given graph.
clusterSizes - Variable in class org.kepler.spark.mllib.KMeansClustering
The size of each cluster.
clusterSizes - Variable in class org.kepler.spark.mllib.KMeansModel
The size of each cluster.
CM - Static variable in class com.jgoodies.forms.layout.ConstantSize
 
cmdFile - Variable in class org.kepler.actor.job.GenericJobLauncher
The submit file to be used at job submission.
cmdFile - Variable in class org.kepler.actor.job.JobCreator
The submit file to be used at job submission.
cmdFileLocal - Variable in class org.kepler.actor.job.GenericJobLauncher
Specifying whether the cmdFile is locally stored or on the remote target.
cmdFileLocal - Variable in class org.kepler.actor.job.JobCreator
Specifying whether the cmdFile is locally stored or on the remote target.
CmdLineArgException - Exception in ptolemy.plot
Exception thrown by plot classes if there are format problems with the data to be plotted.
CmdLineArgException() - Constructor for exception ptolemy.plot.CmdLineArgException
Construct a command line argument exception.
CmdLineArgException(String) - Constructor for exception ptolemy.plot.CmdLineArgException
Construct a command line argument exception.
cmdLineOptions - Variable in class org.sdm.spa.actors.transport.FileCopierBase
 
cmdOptions - Variable in class org.sdm.spa.actors.transport.GenericFileCopier
Additional command line options to be used for the selected protocol.
cmdText - Variable in class org.kepler.actor.job.GenericJobLauncher
The text of the job specification.
code - Variable in class org.kepler.gis.actor.proj.GetProjection
The EPSG code.
codeBook - Variable in class ptolemy.domains.sdf.lib.vq.HTVQEncode
A Parameter of type String, giving the location of the codebook data file relative to the root classpath.
codeBook - Variable in class ptolemy.domains.sdf.lib.vq.VQDecode
A Parameter of type String, giving the location of the codebook data file relative to the root classpath.
codedRate - Variable in class ptolemy.actor.lib.comm.HammingCoder
Integer defining the Hamming code block size.
codedRate - Variable in class ptolemy.actor.lib.comm.HammingDecoder
Integer defining the Hamming code block size.
coefficient - Variable in class org.geon.Interpolate
Weight coefficient
CoGroup - Class in org.kepler.ddp.actor.pattern
An actor for the CoGroup DDP pattern.
CoGroup(Workspace) - Constructor for class org.kepler.ddp.actor.pattern.CoGroup
Construct a new CoGroup in a workspace.
CoGroup(CompositeEntity, String) - Constructor for class org.kepler.ddp.actor.pattern.CoGroup
Construct a new CoGroup in a container with a given name.
coGroup(Iterator<Record>, Iterator<Record>, Collector<Record>) - Method in class org.kepler.stratosphere.stub.KeplerCoGroupStub
Transfer the data from Stratosphere to Kepler, execute the workflow, and then transfer the data from Kepler to Stratosphere.
coGroup(Iterator<Record>, Iterator<Record>, Collector<Record>) - Method in class org.kepler.stratosphere.stub.SumValuesCoGroup
 
CoGroupCountWords() - Constructor for class org.kepler.spark.examples.JavaWordCount.CoGroupCountWords
 
CoGroupInput - Class in org.kepler.ddp.actor.pattern.stub
A stub actor that writes data into workflows for the CoGroup pattern.
CoGroupInput(CompositeEntity, String) - Constructor for class org.kepler.ddp.actor.pattern.stub.CoGroupInput
Construct a new CoGroupInput in a container with a given name.
CoGroupOperator - Class in org.kepler.spark.operator
An operator for cogroup.
CoGroupOperator(PairFlatMapFunction<Iterator<Tuple2<?, Tuple2<Iterable<?>, Iterable<?>>>>, ?, ?>, String) - Constructor for class org.kepler.spark.operator.CoGroupOperator
Create a new CoGroupOperator.
COLDELIM - Static variable in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreDataSource
 
collapseAll(JTree) - Static method in class org.kepler.gui.LibrarySearchResultPane
collapses a given library completely
collapseAll() - Method in class org.kepler.gui.LibrarySearchResultPane
collapses the default library tree completely
collectFreeVariables(ASTPtRootNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableCollector
Return the set of names of free variables in the given parse tree.
collectFreeVariables(ASTPtRootNode, ParserScope) - Method in class ptolemy.data.expr.ParseTreeFreeVariableCollector
 
COLON - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
Color - Class in org.kepler.sms
Created by IntelliJ IDEA.
Color() - Constructor for class org.kepler.sms.Color
 
Color(Color) - Constructor for class org.kepler.sms.Color
 
Color(String) - Constructor for class org.kepler.sms.Color
 
color - Variable in class ptolemy.vergil.icon.NameIcon
The background color to use in the box.
ColorAttribute - Class in ptolemy.actor.gui
This is an attribute that specifies a color.
ColorAttribute(String) - Constructor for class ptolemy.actor.gui.ColorAttribute
Construct an attribute with the given name.
ColorAttribute(NamedObj, String) - Constructor for class ptolemy.actor.gui.ColorAttribute
Construct an attribute with the given name contained by the specified container.
ColoredListCellRenderer - Class in org.kepler.tagging.gui
Created by IntelliJ IDEA.
ColoredListCellRenderer() - Constructor for class org.kepler.tagging.gui.ColoredListCellRenderer
 
colorKey - Variable in class ptolemy.vergil.icon.TableIcon
A column name to use as a color key.
ColorTableCellEditor - Class in org.kepler.plotting.table
Created by IntelliJ IDEA.
ColorTableCellEditor() - Constructor for class org.kepler.plotting.table.ColorTableCellEditor
 
ColorTableCellEditor - Class in org.kepler.tagging.gui
Created by IntelliJ IDEA.
ColorTableCellEditor() - Constructor for class org.kepler.tagging.gui.ColorTableCellEditor
 
ColorTableCellRenderer - Class in org.kepler.plotting.table
Created by IntelliJ IDEA.
ColorTableCellRenderer() - Constructor for class org.kepler.plotting.table.ColorTableCellRenderer
 
ColorTableCellRenderer - Class in org.kepler.tagging.gui
Created by IntelliJ IDEA.
ColorTableCellRenderer() - Constructor for class org.kepler.tagging.gui.ColorTableCellRenderer
 
colsAssembled - Variable in class org.kepler.spark.mllib.VectorAssemble
Columns to assemble into feature vectors.
colsToDrop - Variable in class org.kepler.spark.mllib.DropColumns
Columns to drop
ColtBeta - Class in ptolemy.actor.lib.colt
Produce a random sequence with a Beta distribution.
ColtBeta(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.colt.ColtBeta
Construct an actor with the given container and name.
ColtBinomial - Class in ptolemy.actor.lib.colt
Produce a random sequence with a Binomial distribution.
ColtBinomial(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.colt.ColtBinomial
Construct an actor with the given container and name.
ColtBinomialSelector - Class in ptolemy.actor.lib.colt
Assign trials from several populations using a conditional Binomial selection process.
ColtBinomialSelector(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.colt.ColtBinomialSelector
Construct an actor with the given container and name.
ColtBreitWigner - Class in ptolemy.actor.lib.colt
Produce a random sequence with a BreitWigner distribution.
ColtBreitWigner(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.colt.ColtBreitWigner
Construct an actor with the given container and name.
ColtChiSquare - Class in ptolemy.actor.lib.colt
Produce a random sequence with a ChiSquare distribution.
ColtChiSquare(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.colt.ColtChiSquare
Construct an actor with the given container and name.
ColtExponential - Class in ptolemy.actor.lib.colt
Produce a random sequence with a Exponential distribution.
ColtExponential(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.colt.ColtExponential
Construct an actor with the given container and name.
ColtExponentialPower - Class in ptolemy.actor.lib.colt
Produce a random sequence with a ExponentialPower distribution.
ColtExponentialPower(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.colt.ColtExponentialPower
Construct an actor with the given container and name.
ColtGamma - Class in ptolemy.actor.lib.colt
Produce a random sequence with a Gamma distribution.
ColtGamma(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.colt.ColtGamma
Construct an actor with the given container and name.
ColtHyperGeometric - Class in ptolemy.actor.lib.colt
Produce a random sequence with a HyperGeometric distribution.
ColtHyperGeometric(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.colt.ColtHyperGeometric
Construct an actor with the given container and name.
ColtLogarithmic - Class in ptolemy.actor.lib.colt
Produce a random sequence with a Logarithmic distribution.
ColtLogarithmic(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.colt.ColtLogarithmic
Construct an actor with the given container and name.
ColtNegativeBinomial - Class in ptolemy.actor.lib.colt
Produce a random sequence with a NegativeBinomial distribution.
ColtNegativeBinomial(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.colt.ColtNegativeBinomial
Construct an actor with the given container and name.
ColtNormal - Class in ptolemy.actor.lib.colt
Produce a random sequence with a Normal distribution.
ColtNormal(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.colt.ColtNormal
Construct an actor with the given container and name.
ColtPoisson - Class in ptolemy.actor.lib.colt
Produce a random sequence with a Poisson distribution.
ColtPoisson(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.colt.ColtPoisson
Construct an actor with the given container and name.
ColtPoissonSlow - Class in ptolemy.actor.lib.colt
Produce a random sequence with a PoissonSlow distribution.
ColtPoissonSlow(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.colt.ColtPoissonSlow
Construct an actor with the given container and name.
ColtRandomSource - Class in ptolemy.actor.lib.colt
Base class for Colt random sources.
ColtRandomSource(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.colt.ColtRandomSource
Construct an actor with the given container and name.
ColtStudentT - Class in ptolemy.actor.lib.colt
Produce a random sequence with a StudentT distribution.
ColtStudentT(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.colt.ColtStudentT
Construct an actor with the given container and name.
ColtVonMises - Class in ptolemy.actor.lib.colt
Produce a random sequence with a VonMises distribution.
ColtVonMises(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.colt.ColtVonMises
Construct an actor with the given container and name.
ColtZeta - Class in ptolemy.actor.lib.colt
Produce a random sequence with a Zeta distribution.
ColtZeta(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.colt.ColtZeta
Construct an actor with the given container and name.
Column - Class in org.kepler.util.sql
A generic representation of an SQL column.
Column(Column.Type) - Constructor for class org.kepler.util.sql.Column
Construct a Column with a type.
Column(Column.Type, boolean) - Constructor for class org.kepler.util.sql.Column
Construct a Column with a type and specify auto-increment.
Column(Column.Type, boolean, boolean) - Constructor for class org.kepler.util.sql.Column
Construct a Column with a type and specify auto-increment and primary key.
Column(Column.Type, boolean, boolean, boolean) - Constructor for class org.kepler.util.sql.Column
Construct a Column with a type and specify auto-increment, primary key, and if null values are allowed.
Column(Column.Type, int) - Constructor for class org.kepler.util.sql.Column
Construct a Column with a type and type length.
Column(Column.Type, int, boolean) - Constructor for class org.kepler.util.sql.Column
Construct a Column with a type and type length, and specifying if can be null.
Column(Column.Type, int, boolean, boolean) - Constructor for class org.kepler.util.sql.Column
Construct a Column with a type and type length, and specifying if can be null or a primary key.
Column(Column.Type, String) - Constructor for class org.kepler.util.sql.Column
Construct a Column with a type and a default value.
column - Variable in class ptolemy.actor.lib.SubMatrix
The starting column number.
column - Variable in class ptolemy.data.expr.SimpleCharStream
 
column - Variable in class ptolemy.moml.unit.SimpleCharStream
 
column - Variable in class ptolemy.vergil.actor.lib.LEDMatrix
The column of the LED to be illuminated.
Column.Type - Enum in org.kepler.util.sql
Data types.
COLUMN_MARGIN - Static variable in class org.kepler.workflowrunmanager.WRMDefaults
 
COLUMN_TITLES - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelAdv
 
COLUMN_TITLES - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelStd
 
COLUMN_TITLES - Static variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableOverviewModel
 
COLUMN_WIDTHS - Static variable in class org.kepler.plotting.Row
 
ColumnGroup - Class in org.kepler.workflowrunmanager.gui
ColumnGroup, GroupableTableColumnModel, GroupableTableHeader, GroupableTableHeaderUI and GroupableTableCellRenderer taken from a post by Steve Webb (16/09/04).
ColumnGroup(TableCellRenderer, TableCellEditor, Object) - Constructor for class org.kepler.workflowrunmanager.gui.ColumnGroup
Standard ColumnGroup constructor.
columnGroupIterator() - Method in class org.kepler.workflowrunmanager.gui.GroupableTableColumnModel
Provides an Iterator to iterate over the ColumnGroup list.
columnGroups - Variable in class org.kepler.workflowrunmanager.gui.GroupableTableColumnModel
Hold the list of ColumnGroups which define what group each normal column is within, if any.
ColumnIndices - Variable in class org.kepler.spark.mllib.ExtractColumns
An Array of column indices.
COLUMNMAJOR - Static variable in class org.kepler.objectmanager.data.db.Entity
static variable for COLUMNMAJOR tables
columnMajor - Variable in class ptolemy.actor.lib.MatrixToArray
If true, then insert the first column into the array first, followed by the second column, etc.
columnNames - Variable in class org.kepler.actor.io.ArrayOfRecordsWriter
Comma-separated list of column names to write in header of table.
columnNames - Variable in class org.kepler.spark.mllib.ConvertColumns
outgoing units of value to convert
columnNames() - Method in class org.kepler.util.sql.Table
Get the column names.
columnOrigins - Variable in class com.jgoodies.forms.layout.FormLayout.LayoutInfo
Holds the origins of the columns.
columns - Variable in class org.kepler.actor.io.ArrayOfRecordsWriter
Comma-separated list of name and order of columns to output.
columns() - Method in class org.kepler.util.sql.Table
Get the columns.
columns - Variable in class ptolemy.domains.sdf.lib.DoubleToMatrix
Deprecated.
The number of columns.
columns - Variable in class ptolemy.domains.sdf.lib.MatrixJoin
The number of matrices to arrange left to right on the output.
columns - Variable in class ptolemy.domains.sdf.lib.MatrixToDouble
Deprecated.
The number of columns.
columns - Variable in class ptolemy.domains.sdf.lib.MatrixToSequence
The number of columns in the input.
columns - Variable in class ptolemy.domains.sdf.lib.SequenceToMatrix
The number of columns in the output.
columns - Variable in class ptolemy.vergil.actor.lib.LEDMatrix
The number of columns.
columns - Variable in class ptolemy.vergil.toolbox.ArrayOfRecordsConfigureFactory
The names of the fields to be displayed from the records, in the order in which they should be displayed.
columnsDisplayed - Variable in class ptolemy.actor.lib.gui.Display
The horizontal size of the display, in columns.
columnsDisplayed - Variable in class ptolemy.vergil.toolbox.TextEditorConfigureFactory
The horizontal size of the display, in columns.
columnsDisplayed - Variable in class ptolemy.vergil.toolbox.TextEditorTableauFactory
The horizontal size of the display, in columns.
columnSpan - Variable in class ptolemy.actor.lib.SubMatrix
The span of columns.
ColumnSpec - Class in com.jgoodies.forms.layout
Specifies columns in FormLayout by their default orientation, start size and resizing behavior.
ColumnSpec(FormSpec.DefaultAlignment, Size, double) - Constructor for class com.jgoodies.forms.layout.ColumnSpec
Constructs a ColumnSpec for the given default alignment, size and resize weight.
ColumnSpec(Size) - Constructor for class com.jgoodies.forms.layout.ColumnSpec
Constructs a ColumnSpec for the given size using the default alignment, and no resizing.
ColumnSpec(String) - Constructor for class com.jgoodies.forms.layout.ColumnSpec
Constructs a ColumnSpec from the specified encoded description.
columnSplit - Variable in class ptolemy.domains.sdf.lib.MatrixSplit
An array specifying the number of columns in the output matrices.
com.jgoodies.forms.builder - package com.jgoodies.forms.builder
Contains optional builder classes of the Forms framework.
com.jgoodies.forms.debug - package com.jgoodies.forms.debug
Consists of optional classes that help you find, understand and fix layout problems
com.jgoodies.forms.factories - package com.jgoodies.forms.factories
Consists of optional Forms framework factory classes that assist you in building consistent forms quickly
com.jgoodies.forms.layout - package com.jgoodies.forms.layout
Contains the core classes of the JGoodies Forms framework: layout manager, column and row specifications, sizes and cell constraints
com.jgoodies.forms.util - package com.jgoodies.forms.util
Consists of Forms framework helper classes for unit conversion and layout styles
com.microstar.xml - package com.microstar.xml
The com.microstar.xml package.
com.microstar.xml.demo - package com.microstar.xml.demo
 
com.microstar.xml.driver - package com.microstar.xml.driver
 
com.numericsolutions.geomodeltools - package com.numericsolutions.geomodeltools
 
combination - Variable in class org.resurgence.actor.BooleanAccumulator
The output port, which contains their combination.
combineExecutionClass - Variable in class org.kepler.ddp.actor.pattern.Reduce
The name of the combiner class.
combineInternalTransitions() - Method in class ptolemy.domains.modal.kernel.ia.InterfaceAutomaton
Combine each chain of internal transitions into one transition.
CombineInternalTransitions - Class in ptolemy.domains.modal.kernel.test
Combine the internal transitions using the combineInternalTransitions() method.
CombineInternalTransitions(String) - Constructor for class ptolemy.domains.modal.kernel.test.CombineInternalTransitions
Combine the internal transitions for the argument automaton and write the MoML description for the result to stdout.
Combiner4TagValue - Class in org.kepler.hadoop.mapreduce
This class include a identical combiner for TaggedValue data type.
Combiner4TagValue() - Constructor for class org.kepler.hadoop.mapreduce.Combiner4TagValue
 
ComboBox - Class in ptolemy.actor.gui.properties
A GUI property that encloses a JComboBox component.
ComboBox(NamedObj, String) - Constructor for class ptolemy.actor.gui.properties.ComboBox
Construct a GUI property with the given name contained by the specified entity.
ComboBox(NamedObj, String, JComponent) - Constructor for class ptolemy.actor.gui.properties.ComboBox
Construct a GUI property with the given name contained by the specified entity with the given Java Swing component.
ComboBox(NamedObj, String, JComponent, Object) - Constructor for class ptolemy.actor.gui.properties.ComboBox
Construct a GUI property with the given name contained by the specified entity with the given Java Swing component and the given layout constraint.
ComboBox(NamedObj, String, Object) - Constructor for class ptolemy.actor.gui.properties.ComboBox
Construct a GUI property with the given name contained by the specified entity with the given layout constraint.
ComboBox.Item - Class in ptolemy.actor.gui.properties
The base class for an item that can be added to the combo box as a choice.
COMMA - Static variable in class org.ecoinformatics.seek.dataquery.DBTablesGenerator
 
COMMA - Static variable in interface org.kepler.objectmanager.data.db.Constraint
 
COMMA - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
COMMA_OR_FORWARDSLASH - Static variable in class ptolemy.math.Precision.PrecisionFormat
Regular expression definition for a comma "," or a forward slash "/".
command - Variable in class org.cipres.kepler.GUIRunCIPRes
The command path and name are defined in this parameter.
command - Variable in class org.cipres.kepler.JRunCIPRes
The command path and name are defined in this parameter.
command - Variable in class org.kepler.actor.gsissh.ExecGsisshCmd
The command to be executed on the remote host.
command - Variable in class org.kepler.actor.ssh.ExecuteCmd
The command to be executed on the remote host.
command - Variable in class org.sdm.spa.CommandLine
 
command - Variable in class org.sdm.spa.CommandLineExec
The command to execute.
Command - Variable in class org.sdm.spa.ProcessFileRT
The command to be executed on the remote host.
command - Variable in class org.sdm.spa.Ssh2Exec
The command to be executed on the remote host.
command - Variable in class org.srb.SProxy
The proxy command to be performed.
command - Variable in class org.srb.SRBProxyCommand
command port to be executed.
command - Variable in class ptolemy.actor.lib.Exec
The command to be executed.
COMMAND_LINE_NAME - Static variable in class org.kepler.ddp.actor.ExecutionChoice
The name of the command line parameter in each refinement.
CommandLine - Class in org.sdm.spa
Given a command string, the CommandLine actor executes it using the java Runtime class.
CommandLine(CompositeEntity, String) - Constructor for class org.sdm.spa.CommandLine
Construct a CommandLine actor with the given container and name.
CommandLineArgs - Class in org.kepler
Created by David Welker.
CommandLineArgs() - Constructor for class org.kepler.CommandLineArgs
 
CommandLineArgument - Class in org.kepler
A class to hold command line argument information used when parsing the Kepler command like arguments.
CommandLineArguments - Class in org.kepler.module.webview
Module initializer that adds command line arguments for the web view module.
CommandLineArguments() - Constructor for class org.kepler.module.webview.CommandLineArguments
 
CommandLineExec - Class in org.sdm.spa
Execute a command string.
CommandLineExec(CompositeEntity, String) - Constructor for class org.sdm.spa.CommandLineExec
Construct a CommandLine actor with the given container and name.
commandParameter - Variable in class org.srb.SRBProxyCommand
command parameter to be executed.
COMMENT - Static variable in interface ptolemy.data.expr.MatrixParserConstants
RegularExpression Id.
commissionValue - Variable in class org.ecoinformatics.seek.gis.java_gis.GARPSummary
The commission value
commit() - Method in class org.kepler.plotting.Row
 
commit() - Method in class org.kepler.util.sql.DatabaseType
Commit the current transaction.
commit() - Method in class ptolemy.domains.modal.kernel.RelationNode
Update the previous type and difference information of this relation node with the current evaluation result.
CommitAction - Interface in ptolemy.domains.modal.kernel
An action implementing this interface is a commit action.
commitActionList() - Method in class ptolemy.domains.modal.kernel.Transition
Return the list of commit actions contained by this transition.
CommitActionsAttribute - Class in ptolemy.domains.modal.kernel
An action that changes the state of the system.
CommitActionsAttribute(Workspace) - Constructor for class ptolemy.domains.modal.kernel.CommitActionsAttribute
Construct an action in the specified workspace with an empty string as a name.
CommitActionsAttribute(Transition, String) - Constructor for class ptolemy.domains.modal.kernel.CommitActionsAttribute
Construct an action with the given name contained by the specified transition.
commitAnnotationObjects() - Method in class org.kepler.sms.gui.SemanticTypeTable
Saves the current annotations.
commitChanges() - Method in class org.ecoinformatics.seek.sms.KeplerLocalLSIDService
TODO: throw error
commitLinkDomainObjects() - Method in class org.kepler.sms.gui.SemanticLinkTable
FIXME: Fill in...
commitRelationValues() - Method in class ptolemy.domains.modal.kernel.RelationList
Record the current relation values so that when getPreviousMaximumDistance() is called, these recorded values are used.
commitTask(TaskAttemptContext) - Method in class org.kepler.hadoop.io.output.TokenOutputFormat.TokenOutputCommitter
 
CommonsConfigurationReader - Class in org.kepler.configuration
An interface to the deserialization methods required by the configuration manager to deserialize properties
CommonsConfigurationReader() - Constructor for class org.kepler.configuration.CommonsConfigurationReader
constructor
CommonsConfigurationReader(ConfigurationWriter) - Constructor for class org.kepler.configuration.CommonsConfigurationReader
constructor
CommunicationAspect - Interface in ptolemy.actor
An interface for objects that can intervene in communication between actors.
communicationAspect - Variable in class ptolemy.actor.IntermediateReceiver
communication aspect that receives tokens from this receiver.
CommunicationAspectAttributes - Class in ptolemy.actor
Attributes for ports decorated by a communication aspect.
CommunicationAspectAttributes(NamedObj, Decorator) - Constructor for class ptolemy.actor.CommunicationAspectAttributes
Constructor to use when editing a model.
CommunicationAspectAttributes(NamedObj, String) - Constructor for class ptolemy.actor.CommunicationAspectAttributes
Constructor to use when parsing a MoML file.
CommunicationAspectListener - Interface in ptolemy.actor
This interface defines a listener for communication aspects.
CommunicationAspectListener.EventType - Enum in ptolemy.actor
Type of the event.
CommunicationAspectMonitor - Class in ptolemy.actor.gui
This actor implements a Communication aspect Monitor.
CommunicationAspectMonitor(CompositeEntity, String) - Constructor for class ptolemy.actor.gui.CommunicationAspectMonitor
Construct a factory with the specified container and name.
CommunicationAspectMonitor.CommunicationAspectMonitorEditorFactory - Class in ptolemy.actor.gui
Factory that creates the schedule plotter.
CommunicationAspectMonitorEditorFactory(NamedObj, String) - Constructor for class ptolemy.actor.gui.CommunicationAspectMonitor.CommunicationAspectMonitorEditorFactory
Constructs a SchedulePlotter$SchedulePlotterEditorFactory object.
Commutator - Class in ptolemy.actor.lib
A polymorphic commutator, which merges a set of input sequences into a single output sequence.
Commutator(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Commutator
Construct an actor in the specified container with the specified name.
Comparator - Class in ptolemy.actor.lib.logic
Compare two double-valued inputs, and output the boolean result of the comparison.
Comparator(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.logic.Comparator
Construct an actor with the given container and name.
compare(Object, Object) - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.ResultRecordComparator
Compare to objects (ResultRecord) base one there name
compare(Object, Object) - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.SortableResultRecordComparator
Compare to objects (ResultRecord) base one there name
compare(Vector, Vector) - Static method in class org.kepler.sms.SMSServices
Compare the compatibility of the two sets of semantic types.
compare(RecordToken, RecordToken) - Method in class ptolemy.actor.lib.gem5.Gem5Wrapper.SortByCommandTime
Return the difference between time 1 and time2.
compare(Object, Object) - Method in class ptolemy.actor.util.DFUtilities.NamedObjComparator
Compare two objects.
compare(Object, Object) - Method in class ptolemy.actor.util.FuzzyDoubleComparator
Deprecated.
Compare two objects according to a threshold.
compare(Object, Object) - Method in class ptolemy.actor.util.GeneralComparator
Return -1, 0, or 1 if the first object is less than, equal to, or bigger than the second object.
compare(Object, Object) - Method in class ptolemy.actor.util.test.DoubleCQComparator
Compare the two argument.
compare(Object, Object) - Method in class ptolemy.actor.util.TimedEvent.TimeComparator
Compare the two arguments.
compare(Token, Token) - Static method in class ptolemy.data.type.TypeLattice
Compare the types of the two specified tokens in the type lattice.
compare(Token, Type) - Static method in class ptolemy.data.type.TypeLattice
Compare the types of the two specified tokens in the type lattice.
compare(Type, Token) - Static method in class ptolemy.data.type.TypeLattice
Compare the types of the two specified tokens in the type lattice.
compare(Type, Type) - Static method in class ptolemy.data.type.TypeLattice
Compare two types in the type lattice.
compare(Object, Object) - Method in class ptolemy.domains.sdf.optimize.OptimalScheduleFinder._StateComparatorLowestValue
compare two states on their value.
compare(Object, Object) - Method in class ptolemy.domains.sdf.optimize.OptimalScheduleFinder._StateComparatorMaximumProgress
Compare the states based on smallest number of remaining firings.
compare(Object, Object) - Method in interface ptolemy.graph.CPO
Compare two elements in this CPO.
compare(Object, Object) - Method in class ptolemy.graph.DirectedAcyclicGraph
Compare two elements in this CPO.
ComparePairs() - Constructor for class org.kepler.spark.examples.JavaWordCount.ComparePairs
 
compareTo(BlastTabularResult) - Method in class org.kepler.bio.util.BlastTabularResult
 
compareTo(KeplerGraphFrameUpdater) - Method in class org.kepler.module.cloudsharing.Initialize
Compares this object with the specified object for order.
compareTo(KeplerGraphFrameUpdater) - Method in class org.kepler.module.gui.Initialize
Compares this object with the specified object for order.
compareTo(KeplerGraphFrameUpdater) - Method in class org.kepler.module.provenance.Initialize
Compares this object with the specified object for order.
compareTo(KeplerGraphFrameUpdater) - Method in class org.kepler.module.reporting.Initialize
Compares this object with the specified object for order.
compareTo(KeplerGraphFrameUpdater) - Method in class org.kepler.module.workflowrunmanager.Initialize
Compares this object with the specified object for order.
compareTo(KeplerGraphFrameUpdater) - Method in class org.kepler.reporting.gui.ReportViewerPanel
 
compareTo(Object) - Method in class org.kepler.sms.NamedOntClass
 
compareTo(Object) - Method in class org.kepler.sms.NamedOntModel
 
compareTo(Object) - Method in class org.kepler.sms.NamedOntProperty
 
compareTo(RecordValue) - Method in class org.kepler.spark.type.RecordValue
 
compareTo(Key) - Method in class org.kepler.stratosphere.type.ByteArray
 
compareTo(KeplerGraphFrameUpdater) - Method in class org.kepler.workflowrunmanager.gui.WorkflowRunManagerPanel
 
compareTo(KeplerGraphFrameUpdater) - Method in class org.kepler.workflowrunmanager.WorkflowRunManagerManager
 
compareTo(Object) - Method in class org.mlc.swing.layout.ComponentDef
Make it sortable on name so the palette is ordered.
compareTo(VersionSpecification) - Method in class org.ptolemy.commons.ThreeDigitVersionSpecification
Compare this specification to the argument.
compareTo(Dependency) - Method in class ptolemy.actor.util.BooleanDependency
Return Dependency.LESS_THAN, EQUALS, or GREATER_THAN depending on whether the argument is less than, equal to, or greater than this dependency.
compareTo(Dependency) - Method in class ptolemy.actor.util.RealDependency
Return Dependency.LESS_THAN, EQUALS, or GREATER_THAN depending on whether the argument is less than, equal to, or greater than this dependency.
compareTo(Dependency) - Method in class ptolemy.actor.util.SuperdenseDependency
Return Dependency.LESS_THAN, EQUALS, or GREATER_THAN depending on whether the argument is less than, equal to, or greater than this dependency.
compareTo(Object) - Method in class ptolemy.actor.util.SuperdenseTime
Compare this superdense time object with the argument superdense time object for an order.
compareTo(SuperdenseTime) - Method in class ptolemy.actor.util.SuperdenseTime
Compare this superdense time object with the argument superdense time object for an order.
compareTo(Object) - Method in class ptolemy.actor.util.Time
Return -1, 0, or 1 if this time object is less than, equal to, or greater than the given argument.
compareTo(TimedEvent) - Method in class ptolemy.actor.util.TimedEvent
Compare two TimedEvents by comparing their timestamps.
compareTo(DEEvent) - Method in class ptolemy.domains.de.kernel.DEEvent
Compare the tag and depth of this event with those of the argument event for the order.
compareTo(Object) - Method in class ptolemy.domains.de.kernel.DEEvent
Compare this event with the argument event for an order.
compareTo(Object) - Method in class ptolemy.kernel.attributes.VersionAttribute
Compare the value of this VersionAttribute against the argument according to the VersionAttribute syntax and padding rules.
comparison - Variable in class ptolemy.actor.lib.logic.Comparator
The comparison operator.
COMPATIBLE - Static variable in class org.kepler.sms.SMSServices
 
compatible(Vector, Vector) - Static method in class org.kepler.sms.SMSServices
 
compile(String, String) - Method in class org.kepler.scriptengine.java.JavaCompiler
 
compile(String, String, Writer) - Method in class org.kepler.scriptengine.java.JavaCompiler
 
compile(String, String, Writer, String) - Method in class org.kepler.scriptengine.java.JavaCompiler
 
compile(String, String, Writer, String, String) - Method in class org.kepler.scriptengine.java.JavaCompiler
compile given String source and return bytecodes as a Map.
compile(String) - Method in class org.kepler.scriptengine.java.JavaScriptEngine
 
compile(Reader) - Method in class org.kepler.scriptengine.java.JavaScriptEngine
 
complete(DataCacheObject) - Method in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreDataSource
 
complete(DataCacheObject) - Method in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreSchema
 
complete(DataCacheObject) - Method in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource
 
complete(DataCacheObject) - Method in class org.kepler.dataproxy.datasource.geon.GEONDatabaseResource
 
complete(DataCacheObject) - Method in class org.kepler.dataproxy.datasource.geon.GEONShpResource
 
complete(DataCacheObject) - Method in interface org.kepler.objectmanager.cache.DataCacheListener
 
complete(DataCacheObject) - Method in class org.kepler.objectmanager.data.DataSrcProgressFrame
 
complete() - Method in class org.kepler.workflowscheduler.gui.ScheduleChangeController
Call this method when the SearchSchedules worker finishes its job
complete() - Method in interface org.kepler.workflowscheduler.gui.SearchSchedulesWorkerListenerInterface
Call this method when the worker finishs its job
complete() - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerParentPanel
SearchSchedulesListenerInterface calls back this method.
COMPLETE - Static variable in class ptolemy.kernel.util.NamedObj
Indicate that the description(int) method should include everything.
COMPLETED - Static variable in interface ptolemy.actor.Executable
An indicator that the iterate() method completed successfully.
completeSolution() - Method in class ptolemy.moml.unit.Solution
Search for a complete solution.
completeSolution() - Method in class ptolemy.moml.unit.UnitConstraints
Generate a complete solution.
completeUploading(String, String, String, String, String) - Method in class org.kepler.workflowscheduler.gui.ScheduleChangeController
Call the method when the uploading is done.
completeUploading(String, String, String, String, String) - Method in interface org.kepler.workflowscheduler.gui.UploadingKARFileListenerInterface
Call back method when the uploading is done
completeUploading(String, String, String, String, String) - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerParentPanel
Call back method when the uploading is done.
COMPLEX - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
COMPLEX - Static variable in class ptolemy.data.type.BaseType
The complex data type.
Complex - Class in ptolemy.math
This class provides a complex data type and a library of functions that operate on and return complex numbers.
Complex() - Constructor for class ptolemy.math.Complex
Deprecated.
Use Complex.ZERO instead.
Complex(double) - Constructor for class ptolemy.math.Complex
Construct a Complex with a zero imaginary part.
Complex(double, double) - Constructor for class ptolemy.math.Complex
Construct a Complex with the specified real and imaginary parts.
COMPLEX_MATRIX - Static variable in class ptolemy.data.type.BaseType
The complex matrix data type.
ComplexArrayMath - Class in ptolemy.math
This class a provides a library for mathematical operations on arrays of complex numbers, in particular arrays of instances of class ptolemy.math.Complex.
ComplexArrayMath() - Constructor for class ptolemy.math.ComplexArrayMath
 
ComplexBinaryOperation - Interface in ptolemy.math
A operation taking two operands of type Complex, and producing a value of type Complex.
complexMatrix() - Method in class ptolemy.data.ComplexMatrixToken
Return the content of this token as a new 2-D Complex matrix.
complexMatrix() - Method in class ptolemy.data.DoubleMatrixToken
Return the content of this token as a 2-D Complex matrix.
complexMatrix() - Method in class ptolemy.data.IntMatrixToken
Return the content of this token as a 2-D Complex matrix.
complexMatrix() - Method in class ptolemy.data.MatrixToken
Return a copy of the content of this token as a 2-D Complex matrix.
ComplexMatrixMath - Class in ptolemy.math
This class provides a library for mathematical operations on matrices of complex numbers.
ComplexMatrixToken - Class in ptolemy.data
A token that contains a 2-D Complex matrix.
ComplexMatrixToken() - Constructor for class ptolemy.data.ComplexMatrixToken
Construct an ComplexMatrixToken with a one by one matrix.
ComplexMatrixToken(Complex[][]) - Constructor for class ptolemy.data.ComplexMatrixToken
Construct a ComplexMatrixToken with the specified 2-D matrix.
ComplexMatrixToken(Complex[][], int) - Constructor for class ptolemy.data.ComplexMatrixToken
Construct a ComplexMatrixToken with the specified 2-D matrix.
ComplexMatrixToken(String) - Constructor for class ptolemy.data.ComplexMatrixToken
Construct an ComplexMatrixToken from the specified string.
ComplexMatrixToken(Token[], int, int) - Constructor for class ptolemy.data.ComplexMatrixToken
Construct an ComplexMatrixToken from the specified array of tokens.
ComplexMatrixType() - Constructor for class ptolemy.data.type.MatrixType.ComplexMatrixType
 
ComplexToCartesian - Class in ptolemy.actor.lib.conversions
Read a complex token and output double tokens that represent the real and imaginary parts to two different output ports.
ComplexToCartesian(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.conversions.ComplexToCartesian
Construct an actor with the given container and name.
ComplexToken - Class in ptolemy.data
A token that contains a Complex number represented by a 64-bit double-precision floating point real and imaginary parts.
ComplexToken() - Constructor for class ptolemy.data.ComplexToken
Construct a ComplexToken with Complex 0.0+0.0i.
ComplexToken(Complex) - Constructor for class ptolemy.data.ComplexToken
Construct a ComplexToken with the specified value.
ComplexToken(String) - Constructor for class ptolemy.data.ComplexToken
Construct a ComplexToken from the specified string.
ComplexToPolar - Class in ptolemy.actor.lib.conversions
Convert a complex token to polar coordinates, which are represented by two double tokens (magnitude and angle).
ComplexToPolar(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.conversions.ComplexToPolar
Construct an actor with the given container and name.
ComplexUnaryOperation - Interface in ptolemy.math
A operation taking one argument of type Complex, and producing a value of type Complex.
complexValue() - Method in class ptolemy.data.ComplexToken
Return the value of this token as a Complex.
complexValue() - Method in class ptolemy.data.DoubleToken
Return the value of this token as a Complex.
complexValue() - Method in class ptolemy.data.IntToken
Return the value of this token as a Complex.
complexValue() - Method in class ptolemy.data.ScalarToken
Return the value of this token as a Complex.
complexValue() - Method in class ptolemy.data.ShortToken
Return the value of this token as a Complex.
complexValue() - Method in class ptolemy.data.UnsignedByteToken
Return the value of this token as a Complex.
Component - Interface in ptolemy.component
This interface defines the basic methods for initializing and executing components.
ComponentActor - Class in ptolemy.component
A Component is outside compatible with components and inside compatable with actors.
ComponentActor(CompositeEntity, String) - Constructor for class ptolemy.component.ComponentActor
Construct an entity with the given name contained by the specified entity.
ComponentBuilder - Interface in org.mlc.swing.layout
All components that want to be included in the list of components that want to be part of the builder must implement this interface
ComponentDef - Class in org.mlc.swing.layout
A container class for all the definition data about a Component.
ComponentDef() - Constructor for class org.mlc.swing.layout.ComponentDef
 
ComponentDef(Node) - Constructor for class org.mlc.swing.layout.ComponentDef
 
ComponentDef(String, String, String, String) - Constructor for class org.mlc.swing.layout.ComponentDef
 
ComponentDialog - Class in ptolemy.gui
This class is a modal dialog box that contains an arbitrary component.
ComponentDialog(Frame, String, Component) - Constructor for class ptolemy.gui.ComponentDialog
Construct a dialog with the specified owner, title, and component.
ComponentDialog(Frame, String, Component, String[]) - Constructor for class ptolemy.gui.ComponentDialog
Construct a dialog with the specified owner, title, component, and buttons.
ComponentDialog(Frame, String, Component, String[], String) - Constructor for class ptolemy.gui.ComponentDialog
Construct a dialog with the specified owner, title, component, buttons, and message.
ComponentDialog(Frame, String, Component, String[], String, boolean) - Constructor for class ptolemy.gui.ComponentDialog
Construct a dialog with the specified owner, title, component, buttons, and message.
ComponentDirector - Class in ptolemy.component
FIXME
ComponentDirector() - Constructor for class ptolemy.component.ComponentDirector
 
ComponentEntity<T extends ComponentPort> - Class in ptolemy.kernel
A ComponentEntity is a component in a CompositeEntity.
ComponentEntity() - Constructor for class ptolemy.kernel.ComponentEntity
Construct an entity in the default workspace with an empty string The object is added to the workspace directory.
ComponentEntity(Workspace) - Constructor for class ptolemy.kernel.ComponentEntity
Construct an entity in the specified workspace with an empty string as a name.
ComponentEntity(CompositeEntity, String) - Constructor for class ptolemy.kernel.ComponentEntity
Construct an entity with the given name contained by the specified entity.
ComponentEntityConfig - Class in org.kepler.icon
Configuration Utilities for ComponentEntity class, which is a base class for all actors.
ComponentEntityConfig() - Constructor for class org.kepler.icon.ComponentEntityConfig
 
ComponentEntityTimeTest - Class in ptolemy.kernel.test
Class that creates lots of ComponentEntities.
ComponentEntityTimeTest() - Constructor for class ptolemy.kernel.test.ComponentEntityTimeTest
 
ComponentFactory - Interface in com.jgoodies.forms.factories
An interface that defines the factory methods as used by the PanelBuilder and its subclasses.
componentHidden(ComponentEvent) - Method in class ptolemy.actor.gui.SizeAttribute
Do nothing.
componentHidden(ComponentEvent) - Method in class ptolemy.actor.gui.WindowPropertiesAttribute
Do nothing.
ComponentLibraryPreferencesTab - Class in org.kepler.gui
 
ComponentLibraryPreferencesTab() - Constructor for class org.kepler.gui.ComponentLibraryPreferencesTab
 
ComponentLibraryPreferencesTab.ComponentSourceTableModel - Class in org.kepler.gui
 
ComponentLibraryPreferencesTab.Factory - Class in org.kepler.gui
A factory that creates the ServicesListModification panel for the PreferencesFrame.
ComponentLibraryTab - Class in org.kepler.gui
 
ComponentLibraryTab(TableauFrame) - Constructor for class org.kepler.gui.ComponentLibraryTab
 
ComponentLibraryTab.Factory - Class in org.kepler.gui
A factory that creates the library panel for the editors.
ComponentLibraryTab.IconListRenderer - Class in org.kepler.gui
 
ComponentLibraryTab.LibraryActionHandler - Class in org.kepler.gui
Listener used to changes from the NewFolderFrame
ComponentLibraryTab.OntSelectActionHandler - Class in org.kepler.gui
Inner class to handle changes to the Ontology Selection box.
ComponentLibraryTab.SearchButtonActionHandler - Class in org.kepler.gui
class to handle the search button
componentMoved(ComponentEvent) - Method in class ptolemy.actor.gui.SizeAttribute
Do nothing.
componentMoved(ComponentEvent) - Method in class ptolemy.actor.gui.WindowPropertiesAttribute
Record the new position.
ComponentPort - Class in ptolemy.kernel
A port supporting hierarchy.
ComponentPort() - Constructor for class ptolemy.kernel.ComponentPort
Construct a port in the default workspace with an empty string as its name.
ComponentPort(Workspace) - Constructor for class ptolemy.kernel.ComponentPort
Construct a port in the specified workspace with an empty string as a name.
ComponentPort(ComponentEntity, String) - Constructor for class ptolemy.kernel.ComponentPort
Construct a port with the given name contained by the specified entity.
ComponentRelation - Class in ptolemy.kernel
This class defines a relation supporting hierarchy (clustered graphs).
ComponentRelation() - Constructor for class ptolemy.kernel.ComponentRelation
Construct a relation in the default workspace with an empty string as its name.
ComponentRelation(Workspace) - Constructor for class ptolemy.kernel.ComponentRelation
Construct a relation in the specified workspace with an empty string as a name.
ComponentRelation(CompositeEntity, String) - Constructor for class ptolemy.kernel.ComponentRelation
Construct a relation with the given name contained by the specified entity.
componentResized(ComponentEvent) - Method in class ptolemy.actor.gui.SizeAttribute
Record the new size.
componentResized(ComponentEvent) - Method in class ptolemy.actor.gui.WindowPropertiesAttribute
Record the new size.
COMPONENTS - Static variable in class org.kepler.sms.gui.SuggestCompatibleOperation
 
ComponentSearchResultTreeSelectionListener - Class in org.kepler.workflowscheduler.gui
Listener to the selection of the component search result tree
ComponentSearchResultTreeSelectionListener(WorkflowSchedulerParentPanel) - Constructor for class org.kepler.workflowscheduler.gui.ComponentSearchResultTreeSelectionListener
Constructor
componentShown(ComponentEvent) - Method in class ptolemy.actor.gui.SizeAttribute
Do nothing.
componentShown(ComponentEvent) - Method in class ptolemy.actor.gui.WindowPropertiesAttribute
Do nothing.
ComponentSourceTableModel() - Constructor for class org.kepler.gui.ComponentLibraryPreferencesTab.ComponentSourceTableModel
 
ComponentUploader - Class in org.kepler.gui.kar
 
ComponentUploader(TableauFrame) - Constructor for class org.kepler.gui.kar.ComponentUploader
 
compose(InterfaceAutomaton) - Method in class ptolemy.domains.modal.kernel.ia.InterfaceAutomaton
Return a new InterfaceAutomaton that is the composition of the specified InterfaceAutomaton and this one.
compose(InterfaceAutomaton, boolean) - Method in class ptolemy.domains.modal.kernel.ia.InterfaceAutomaton
Return a new InterfaceAutomaton that is the composition of the specified InterfaceAutomaton and this one.
Compose - Class in ptolemy.domains.modal.kernel.test
Compute the composition of interface automata.
Compose(String[], boolean) - Constructor for class ptolemy.domains.modal.kernel.test.Compose
Compose the interface automata in the argument array and write the MoML description for the composition to stdout.
composeWith(CausalityInterface) - Method in class ptolemy.domains.modal.modal.MirrorCausalityInterface
Add the specified causality interface for the specified actor.
ComposeWithAction() - Constructor for class ptolemy.vergil.modal.ia.InterfaceAutomatonGraphController.ComposeWithAction
Create a new action to perform composition.
CompositeActor - Class in ptolemy.actor
A CompositeActor is an aggregation of actors.
CompositeActor() - Constructor for class ptolemy.actor.CompositeActor
Construct a CompositeActor in the default workspace with no container and an empty string as its name.
CompositeActor(Workspace) - Constructor for class ptolemy.actor.CompositeActor
Construct a CompositeActor in the specified workspace with no container and an empty string as a name.
CompositeActor(CompositeEntity, String) - Constructor for class ptolemy.actor.CompositeActor
Create an actor with a name and a container.
CompositeActorApplication - Class in ptolemy.actor.gui
This application creates one or more Ptolemy II models given a classname on the command line, and then executes those models, each in its own thread.
CompositeActorApplication() - Constructor for class ptolemy.actor.gui.CompositeActorApplication
 
CompositeActorSimpleApplication - Class in ptolemy.actor.gui
This application creates one or more Ptolemy II models given a classname on the command line, and then executes those models, each in its own thread.
CompositeActorSimpleApplication() - Constructor for class ptolemy.actor.gui.CompositeActorSimpleApplication
 
COMPOSITEACTORTYPE - Static variable in class org.kepler.kar.karxml.KarXml
 
CompositeClassEntity - Class in org.kepler.moml
An entity for a director.
CompositeClassEntity() - Constructor for class org.kepler.moml.CompositeClassEntity
 
CompositeClassEntity(CompositeEntity, String) - Constructor for class org.kepler.moml.CompositeClassEntity
 
CompositeClassEntity(Workspace) - Constructor for class org.kepler.moml.CompositeClassEntity
 
CompositeClassEntity(Workspace, String) - Constructor for class org.kepler.moml.CompositeClassEntity
 
COMPOSITECLASSENTITYTYPE - Static variable in class org.kepler.kar.karxml.KarXml
 
CompositeEntity - Class in ptolemy.kernel
A CompositeEntity is a cluster in a clustered graph.
CompositeEntity() - Constructor for class ptolemy.kernel.CompositeEntity
Construct an entity in the default workspace with an empty string as its name.
CompositeEntity(Workspace) - Constructor for class ptolemy.kernel.CompositeEntity
Construct an entity in the specified workspace with an empty string as a name.
CompositeEntity(CompositeEntity, String) - Constructor for class ptolemy.kernel.CompositeEntity
Create an object with a name and a container.
CompositeEntity.ContainedObjectsIterator - Class in ptolemy.kernel
This class is an iterator over all the contained objects (all instances of NamedObj).
CompositePortDialog - Class in org.kepler.sms.gui
 
CompositePortDialog(Frame, Entity, int) - Constructor for class org.kepler.sms.gui.CompositePortDialog
 
CompositeProcessDirector - Class in ptolemy.actor.process
A baseclass for directors in process oriented domains that incorporate hierarchical heterogeneity.
CompositeProcessDirector() - Constructor for class ptolemy.actor.process.CompositeProcessDirector
Construct a director in the default workspace with an empty string as its name.
CompositeProcessDirector(Workspace) - Constructor for class ptolemy.actor.process.CompositeProcessDirector
Construct a director in the workspace with an empty name.
CompositeProcessDirector(CompositeEntity, String) - Constructor for class ptolemy.actor.process.CompositeProcessDirector
Construct a director in the given container with the given name.
CompositePtolemyModel - Class in ptolemy.vergil.kernel
A diva node model for a Ptolemy II composite entity.
CompositePtolemyModel() - Constructor for class ptolemy.vergil.kernel.CompositePtolemyModel
 
CompositeTreeModel - Class in ptolemy.vergil.tree
A tree model for Ptolemy II models.
CompositeTreeModel(CompositeEntity) - Constructor for class ptolemy.vergil.tree.CompositeTreeModel
Create a new tree model with the specified root.
compression - Variable in class ptolemy.actor.lib.conversions.ImageToString
Parameter that determines the encoding of the image ('gif', 'png', 'jpg').
computeAlternatingSimulation(InterfaceAutomaton) - Method in class ptolemy.domains.modal.kernel.ia.InterfaceAutomaton
Return the unique maximal alternating simulation from the specified automaton to this automaton.
computeAverageCharWidth(FontMetrics, String) - Method in class com.jgoodies.forms.util.AbstractUnitConverter
Computes and returns the average character width of the specified test string using the given FontMetrics.
ComputeHistogram - Class in ptolemy.actor.lib
Compute a histogram.
ComputeHistogram(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.ComputeHistogram
Construct an actor with the given container and name.
computeMerge() - Method in class org.kepler.sms.actors.MergeActor
 
computeMerge() - Method in class org.kepler.sms.actors.SimpleComputeMergeAlgorithm
 
computeMergeOld() - Method in class org.kepler.sms.actors.MergeActor
 
con - Variable in class org.camera.service.CAMERARESTService
 
concatenate(ArrayToken, ArrayToken) - Static method in class ptolemy.data.expr.UtilityFunctions
Concatenate two arrays.
concatenate(ArrayToken) - Static method in class ptolemy.data.expr.UtilityFunctions
Concatenate an array of arrays into a single array.
concatenateReturnType(Type, Type) - Static method in class ptolemy.data.expr.UtilityFunctions
Return the return type of the two argument concatenate method, given the types of the arguments.
concatenateReturnType(Type) - Static method in class ptolemy.data.expr.UtilityFunctions
Return the return type of the one argument concatenate method, given the type of the argument.
ConceptCBItem(String) - Constructor for class org.kepler.tagging.gui.CBItems.ConceptCBItem
 
conceptName - Variable in class org.kepler.tagging.gui.CBItems.ConceptCBItem
 
ConcreteMatrixToken - Class in ptolemy.data.expr
A token that represents an empty matrix, with no element type.
ConcreteMatrixToken() - Constructor for class ptolemy.data.expr.ConcreteMatrixToken
 
ConcreteScalarToken - Class in ptolemy.data.expr
A token that represents a scalar of any type.
ConcreteScalarToken() - Constructor for class ptolemy.data.expr.ConcreteScalarToken
 
COND_AND - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
COND_OR - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
condition - Variable in class org.ecoinformatics.seek.ecogrid.quicksearch.SearchQuery
 
conditions - Variable in class org.srb.SRBAddMD
{"att val"}
conditions - Variable in class org.srb.SRBCreateQueryConditions
An array of conditions strings.
conditions - Variable in class org.srb.SRBQueryMD
{"dataset_att op val", "|","collection_att op val", "|", "predefined_att op val"} The conditions for files and directories are specified as follows: Straight slashes ("|") separate between the different metadata types.
config - Variable in class org.kepler.stratosphere.io.output.TokenOutputFormat.AbstractConfigBuilder
The configuration into which the parameters will be written.
config - Variable in class org.ROADnet.QAQC
The config file.
ConfigBuilder(Configuration) - Constructor for class org.kepler.stratosphere.io.output.TokenOutputFormat.ConfigBuilder
Creates a new builder for the given configuration.
configDir - Variable in class org.kepler.ddp.director.DDPDirector
DDP engine configuration directory.
configDir - Variable in class org.kepler.hadoop.actor.HDFSLoader
DDP engine configuration directory.
configDir - Variable in class org.kepler.hadoop.actor.HDFSRemover
DDP engine configuration directory.
configDir - Variable in class org.kepler.hadoop.actor.HDFSUnLoader
DDP engine configuration directory.
configDir - Variable in class org.kepler.hadoop.actor.HDFSWriter
DDP engine configuration directory.
configReader - Variable in class org.kepler.configuration.ConfigurationManager
 
Configurable - Interface in ptolemy.kernel.util
Objects that can be configured by reading a file or configuration information given as text, typically in XML format, should implement this interface.
ConfigurableAttribute - Class in ptolemy.kernel.util
This class provides a simple way to get a long string into an attribute.
ConfigurableAttribute() - Constructor for class ptolemy.kernel.util.ConfigurableAttribute
Construct a new attribute with no container and an empty string as its name.
ConfigurableAttribute(Workspace) - Constructor for class ptolemy.kernel.util.ConfigurableAttribute
Construct a new attribute with no container and an empty string as a name.
ConfigurableAttribute(NamedObj, String) - Constructor for class ptolemy.kernel.util.ConfigurableAttribute
Construct a new attribute with the given container and name.
ConfigurableEntity - Interface in ptolemy.domains.modal.kernel
An interface for entities that can be configured.
Configuration - Class in ptolemy.actor.gui
The configuration of an application that uses Ptolemy II classes.
Configuration(Workspace) - Constructor for class ptolemy.actor.gui.Configuration
Construct an instance in the specified workspace with an empty string as a name.
CONFIGURATION - Static variable in class ptolemy.actor.IOPort
Indicate that the description(int) method should include information about whether the port is an input, output, or multiport, whether it is opaque, and what is its width.
CONFIGURATION - Static variable in class ptolemy.actor.IORelation
Indicate that the description(int) method should describe the width of the relation, and whether it has been fixed.
CONFIGURATION_KEPLER_DISTRIBUTED_CACHE_PATH - Static variable in class org.kepler.ddp.Utilities
 
CONFIGURATION_KEPLER_INPUT_KEY_TYPE - Static variable in class org.kepler.ddp.Utilities
The name of the configuration parameter specifying the input key type of the stub.
CONFIGURATION_KEPLER_INPUT_TOKEN - Static variable in class org.kepler.ddp.Utilities
The name of the configuration parameter specifying the name of the input token.
CONFIGURATION_KEPLER_INPUT_VALUE_TYPE - Static variable in class org.kepler.ddp.Utilities
The name of the configuration parameter specifying the input value type of the stub.
CONFIGURATION_KEPLER_JOB_KEY_CLASS - Static variable in class org.kepler.ddp.Utilities
 
CONFIGURATION_KEPLER_JOB_VALUE_CLASS - Static variable in class org.kepler.ddp.Utilities
 
CONFIGURATION_KEPLER_MODEL - Static variable in class org.kepler.ddp.Utilities
The name of the configuration parameter for the MoML of the sub-workflow.
CONFIGURATION_KEPLER_MODEL_NAME - Static variable in class org.kepler.ddp.Utilities
The name of the configuration parameter for the name of the sub-workflow.
CONFIGURATION_KEPLER_MODEL_PATH - Static variable in class org.kepler.ddp.Utilities
The name of the configuration parameter for the path of the sub-worflow MoML.
CONFIGURATION_KEPLER_MODULES_DIR - Static variable in class org.kepler.ddp.Utilities
The name of the configuration parameter for the path of the Kepler installation.
CONFIGURATION_KEPLER_PARA_PARALLEL - Static variable in class org.kepler.ddp.Utilities
 
CONFIGURATION_KEPLER_PARA_PREFIX - Static variable in class org.kepler.ddp.Utilities
 
CONFIGURATION_KEPLER_PRINT_EXE_INFO - Static variable in class org.kepler.ddp.Utilities
 
CONFIGURATION_KEPLER_REDIRECT_DIR - Static variable in class org.kepler.ddp.Utilities
The name of the configuration parameter for the path to redirect display actors.
CONFIGURATION_KEPLER_RUN_WORKFLOW_LIFECYCLE_PER_INPUT - Static variable in class org.kepler.ddp.Utilities
The name of the configuration parameter specifying if the full lifecycle of the sub-workflow should be executed for each input.
CONFIGURATION_KEPLER_SAME_JVM - Static variable in class org.kepler.ddp.Utilities
The name of the configuration parameter to specify running in the same JVM as Kepler.
CONFIGURATION_KEPLER_SCRIPT_ENGINE_FACTORY_NAME - Static variable in class org.kepler.ddp.Utilities
The name of the configuration parameter specifying the name of the script engine factory.
CONFIGURATION_KEPLER_SINK_ACTOR_NAME - Static variable in class org.kepler.ddp.Utilities
The name of the configuration parameter specifying the name of a DDPDataSink actor.
CONFIGURATION_KEPLER_SOURCE_ACTOR_NAME - Static variable in class org.kepler.ddp.Utilities
The name of the configuration parameter specifying the name of a DDPDataSource actor.
CONFIGURATION_KEPLER_STUB_CODE - Static variable in class org.kepler.ddp.Utilities
The name of the configuration parameter specifying the code to execute in the stub.
CONFIGURATION_KEPLER_TAG - Static variable in class org.kepler.ddp.Utilities
 
ConfigurationApplication - Class in ptolemy.actor.gui
An application that reads one or more files specified on the command line, or instantiates one or more Java classes specified by the -class option.
ConfigurationApplication() - Constructor for class ptolemy.actor.gui.ConfigurationApplication
Instantiate a ConfigurationApplication.
ConfigurationApplication(String[]) - Constructor for class ptolemy.actor.gui.ConfigurationApplication
Parse the specified command-line arguments, instantiating classes and reading files that are specified.
ConfigurationApplication(String, String[]) - Constructor for class ptolemy.actor.gui.ConfigurationApplication
Parse the specified command-line arguments, instantiating classes and reading files that are specified.
ConfigurationApplication(String, String[], MessageHandler, ErrorHandler) - Constructor for class ptolemy.actor.gui.ConfigurationApplication
Parse the specified command-line arguments, instantiating classes and reading files that are specified.
ConfigurationApplication.IgnoreErrorHandler - Class in ptolemy.actor.gui
Error Handler that ignore errors.
configurationDirectories(String) - Static method in class ptolemy.actor.gui.ConfigurationApplication
Return the array of possible configuration directories.
configurationDirectoryFullOrFirst() - Static method in class ptolemy.actor.gui.ConfigurationApplication
Return the full configuration directory or, if the full configuration directory is not found, then the first configuration directory.
ConfigurationEffigy - Class in ptolemy.actor.gui
An effigy for a Ptolemy II model.
ConfigurationEffigy(Workspace) - Constructor for class ptolemy.actor.gui.ConfigurationEffigy
Create a new effigy in the specified workspace with an empty string for its name.
ConfigurationEffigy(CompositeEntity, String) - Constructor for class ptolemy.actor.gui.ConfigurationEffigy
Create a new effigy in the given directory with the given name.
ConfigurationEvent - Class in org.kepler.configuration
An event object for configuration system events
ConfigurationEvent(ConfigurationProperty) - Constructor for class org.kepler.configuration.ConfigurationEvent
 
ConfigurationEventListener - Interface in org.kepler.configuration
An interface for event listeners of the configuration system
ConfigurationManager - Class in org.kepler.configuration
A class to manage configuration options in Kepler.
ConfigurationManagerException - Exception in org.kepler.configuration
exception for namepace errors
ConfigurationManagerException(String) - Constructor for exception org.kepler.configuration.ConfigurationManagerException
 
ConfigurationNamespace - Class in org.kepler.configuration
Class that represents a namespace in the configuration.
ConfigurationNamespace(String) - Constructor for class org.kepler.configuration.ConfigurationNamespace
 
ConfigurationProperty - Class in org.kepler.configuration
Class that represents a configuration property within kepler
ConfigurationProperty(Module, String, List<ConfigurationProperty>) - Constructor for class org.kepler.configuration.ConfigurationProperty
constructor to build a configuration property for a module with a name and a list of properties to load
ConfigurationProperty(Module, String, ConfigurationNamespace, List<ConfigurationProperty>) - Constructor for class org.kepler.configuration.ConfigurationProperty
constructor to build a configuration property for a module with a name, namespace and a list of properties to nest within it
ConfigurationProperty(Module, String, ConfigurationNamespace, List<ConfigurationProperty>, boolean) - Constructor for class org.kepler.configuration.ConfigurationProperty
constructor to build a configuration property for a module with a name, namespace and a list of properties to nest within it
ConfigurationProperty(Module, String, String) - Constructor for class org.kepler.configuration.ConfigurationProperty
constructor to build a configuration property for a module with a name and a single value
ConfigurationProperty(Module, String, ConfigurationNamespace, String) - Constructor for class org.kepler.configuration.ConfigurationProperty
constructor to build a configuration property for a module with a name and a single value
ConfigurationProperty(Module, String) - Constructor for class org.kepler.configuration.ConfigurationProperty
constructor to build a configuration property for a module with a name but with no value or nested property list.
ConfigurationProperty(Module, String, ConfigurationProperty) - Constructor for class org.kepler.configuration.ConfigurationProperty
create a configuration property with one nested property
ConfigurationReader - Interface in org.kepler.configuration
An interface to the deserialization methods required by the configuration manager to deserialize properties
configurations() - Static method in class ptolemy.actor.gui.Configuration
Return a list of all the configurations that have been created.
ConfigurationSelect - Class in ptolemy.actor.lib
Conditionally merge the streams at two input ports depending on the value of the boolean parameter.
ConfigurationSelect(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.ConfigurationSelect
Construct an actor in the specified container with the specified name.
ConfigurationSwitch - Class in ptolemy.actor.lib
Split an input stream onto two output ports depending on a boolean selector parameter.
ConfigurationSwitch(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.ConfigurationSwitch
Construct an actor in the specified container with the specified name.
ConfigurationTest - Class in org.kepler.configuration
Created by David Welker.
ConfigurationTest() - Constructor for class org.kepler.configuration.ConfigurationTest
 
ConfigurationUtilities - Class in org.kepler.configuration
A collection of utilities to manage configuration properties.
ConfigurationUtilities() - Constructor for class org.kepler.configuration.ConfigurationUtilities
 
ConfigurationWriter - Interface in org.kepler.configuration
An interface to the serialization methods required by the configuration manager to serialize properties
configure(Configuration) - Method in class org.kepler.bio.stratosphere.input.FASTAInputFormat
Configures this input format by reading the path to the file from the configuration and the string that defines the record delimiter.
configure(Configuration) - Method in class org.kepler.bio.stratosphere.input.FASTAInputFormatBySize
Configures this input format by reading the path to the file from the configuration and the string that defines the record delimiter.
configure(Configuration) - Method in class org.kepler.stratosphere.io.input.TokenInputFormat
Configure the format.
configure(Configuration) - Method in class org.kepler.stratosphere.io.output.NullOutputFormat
 
configure(Configuration) - Method in class org.kepler.stratosphere.io.output.TokenOutputFormat
Configures this output format.
configure - Variable in class org.mlc.swing.layout.ComponentDef
 
configure(URL, String, String) - Method in class ptolemy.actor.gui.properties.ActionGUIProperty
Configure the object with data from the specified input source (a URL) and/or textual data.
configure(URL, String, String) - Method in class ptolemy.actor.gui.properties.GUIAction
Configure the object with data from the specified input source (a URL) and/or textual data.
configure(URL, String, String) - Method in class ptolemy.actor.gui.TableauFactory
Configure the tableau factory with data from the specified input source (a URL) and/or textual data.
configure(URL, String, String) - Method in class ptolemy.actor.LazyTypedCompositeActor
Specify the library contents by giving either a URL (the source argument), or by directly giving the MoML text (the text argument), or both.
configure(URL, String, String) - Method in class ptolemy.actor.lib.Discard
Do nothing, as this actor is not actually configurable.
configure(URL, String, String) - Method in class ptolemy.actor.lib.gui.HistogramPlotter
Configure the plot with data from the specified input source (a URL) and/or textual data, assumed to be in PlotML format.
configure(URL, String, String) - Method in class ptolemy.actor.lib.gui.PlotterBase
Configure the object with data from the specified input source (a URL) and/or textual data, assumed to be in PlotML format.
configure(URL, String, String) - Method in class ptolemy.domains.modal.kernel.State
Configure the object with data from the specified input source (a URL) and/or textual data.
configure(URL, String, String) - Method in interface ptolemy.kernel.util.Configurable
Configure the object with data from the specified input source (a URL) and/or textual data.
configure(URL, String, String) - Method in class ptolemy.kernel.util.ConfigurableAttribute
Configure the object with data from the specified input source (a URL) and/or textual data.
configure(URL, String, String) - Method in class ptolemy.moml.EntityLibrary
Specify the library contents by giving either a URL (the source argument), or by directly giving the MoML text (the text argument), or both.
configure(URL, String, String) - Method in class ptolemy.moml.MoMLModelAttribute
Construct and configure the contained model with the specified source and text.
configure(URL, String, String) - Method in class ptolemy.vergil.basic.KeplerDocumentationAttribute
Configure this documentation attribute.
ConfigureAction - Class in ptolemy.vergil.toolbox
An action that will configure parameters on the current object.
ConfigureAction(String) - Constructor for class ptolemy.vergil.toolbox.ConfigureAction
Construct a new configure action.
configureActor() - Method in class org.sdm.spa.MessageBasedWebService
Deprecated.
Configure the actor for the entered operation of the given web service.
configureActorConstant(String, String, double[]) - Method in class org.camera.service.CAMERARESTService
Currently, this method is not used.
configureActorParameter(String, String, String, String, double[]) - Method in class org.camera.service.CAMERARESTService
This method creates Parameters with name as value and data type it represents as valueType.
configureActorPort(String, String, String) - Method in class org.camera.service.CAMERARESTService
It dynamically creates port with name as value and display name as description and port type is set as valueType.
configureEditor(ComboBoxEditor, Object) - Method in class org.kepler.tagging.gui.AutoCompleteComboBox
 
configureLayout(KShapeLayout, GraphModel) - Method in class ptolemy.vergil.basic.layout.kieler.Parameters
Configure the KIELER layout using a property holder.
ConfigureNamedObjAction - Class in org.kepler.gui
An action that will configure parameters for a specific NamedObj.
ConfigureNamedObjAction(String, NamedObj, Frame) - Constructor for class org.kepler.gui.ConfigureNamedObjAction
Create a new ConfigureInOutlineAction.
configureOperationNames() - Method in class org.sdm.spa.MessageBasedWebService
Deprecated.
Configure the actor for the entered operation of the given web service.
Configurer - Class in ptolemy.actor.gui
This class is an editor for the user settable attributes of an object.
Configurer(NamedObj) - Constructor for class ptolemy.actor.gui.Configurer
Construct a configurer for the specified object.
Configurer - Class in ptolemy.domains.modal.kernel
A composite actor that serves as container of the contents of a configurable entity.
Configurer(Workspace) - Constructor for class ptolemy.domains.modal.kernel.Configurer
Construct a configurer in the given workspace.
Configurer.ContainmentExtender - Class in ptolemy.domains.modal.kernel
The containment extender that returns the configured object as the container of this configurer.
configureRecordFormat(GenericDataSink) - Static method in class org.kepler.stratosphere.io.output.TokenOutputFormat
Creates a configuration builder that can be used to set the input format's parameters to the config in a fluent fashion.
ConfigureUnitsAction - Class in ptolemy.vergil.unit
An action that creates a dialog to configure units.
ConfigureUnitsAction(String) - Constructor for class ptolemy.vergil.unit.ConfigureUnitsAction
Construct a rename dialog action with the specified name, which will appear in the menu that uses this action.
configWriter - Variable in class org.kepler.configuration.ConfigurationManager
 
confirmOverwrite - Variable in class org.geon.AddPointToSVG
If false, then overwrite the specified file if it exists without asking.
confirmOverwrite - Variable in class org.geon.BinaryFileWriter
If false, then overwrite the specified file if it exists without asking.
confirmOverwrite - Variable in class org.geon.FileCopy
If false, then overwrite the specified file if it exists without asking.
confirmOverwrite - Variable in class org.geon.SVGConcat
If false, then overwrite the specified file if it exists without asking.
confirmOverwrite - Variable in class org.kepler.hadoop.actor.HDFSLoader
If false, then overwrite the specified file if it exists without asking.
confirmOverwrite - Variable in class org.kepler.hadoop.actor.HDFSUnLoader
If false, then overwrite the specified file if it exists without asking.
confirmOverwrite - Variable in class org.kepler.hadoop.actor.HDFSWriter
If false, then overwrite the specified file if it exists without asking.
confirmOverwrite - Variable in class org.srb.SGet
Overwrite when SRB file is copied to loalFile
confirmOverwrite - Variable in class org.srb.SPut
Overwrite existing srb file
confirmOverwrite - Variable in class ptolemy.actor.lib.io.LineWriter
If false, then overwrite the specified file if it exists without asking.
conjugate() - Method in class ptolemy.math.Complex
Return the complex conjugate of this complex number.
conjugate(Complex) - Static method in class ptolemy.math.Complex
Return the complex conjugate of the specified complex number.
conjugate(double) - Static method in class ptolemy.math.Complex
Return the complex conjugate of the specified real number, which is just the real number itself.
conjugate(Complex[]) - Static method in class ptolemy.math.ComplexArrayMath
Return a new array of complex numbers that is formed by taking the complex-conjugate of each element in the argument array.
conjugate(Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new matrix that is constructed by conjugating the elements of the input matrix.
conjugateTranspose(Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new matrix that is constructed by transposing the input matrix and conjugating the elements.
connect(Map<String, String>) - Method in class org.kepler.util.sql.DatabaseType
Connect to a database.
connect(Map<String, String>) - Method in class org.kepler.util.sql.MySQL
Connect to a database.
connect(Map<String, String>) - Method in class org.kepler.util.sql.PostgreSQL
Connect to a database.
connect() - Method in class org.kepler.workflowrunmanager.WorkflowRunManager
connect to provenance store via setting queryable to new SQLQueryV8
connect(ComponentPort, ComponentPort) - Method in class ptolemy.kernel.CompositeEntity
Create a new relation and use it to connect two ports.
connect(ComponentPort, ComponentPort, String) - Method in class ptolemy.kernel.CompositeEntity
Create a new relation with the specified name and use it to connect two ports.
connected - Variable in class ptolemy.plot.PlotPoint
True if this point is connected to the previous point by a line.
connectedComponents() - Method in class ptolemy.graph.Graph
Return the connected components of the graph.
connectedPortList() - Method in class ptolemy.kernel.Entity
Return a list of the ports that are connected to contained ports.
connectedPortList() - Method in class ptolemy.kernel.Port
List the connected ports.
connectedPorts() - Method in class ptolemy.kernel.Entity
Deprecated.
Use connectedPortList() instead.
connectedPorts() - Method in class ptolemy.kernel.Port
Deprecated.
Use connectedPortList() instead.
connectFromDest - Variable in class org.sdm.spa.actors.transport.GenericFileCopier
 
ConnectionDetails - Class in org.sdm.spa.actors.transport.vo
 
ConnectionDetails() - Constructor for class org.sdm.spa.actors.transport.vo.ConnectionDetails
 
connectionName - Variable in class org.kepler.spark.actor.SparkBaseActor
The name of the SparkConnection attribute.
connectionName - Variable in class org.kepler.spark.actor.SparkConnection
The name of the connection.
connectionProfile - Variable in class org.kepler.ssh.GsiSshExec
 
connectionsChanged(Port) - Method in class org.ecoinformatics.seek.gis.gdal.GDALTranslateActor
Notify this entity that the links to the specified port have been altered.
connectionsChanged(Port) - Method in class org.ecoinformatics.seek.gis.gdal.GDALWarpActor
Notify this entity that the links to the specified port have been altered.
connectionsChanged(Port) - Method in class org.ecoinformatics.seek.gis.java_gis.GridRescaler
Resets the output token production rate based on width of input port
connectionsChanged(Port) - Method in class org.ecoinformatics.seek.gis.java_gis.GridReset
 
connectionsChanged(Port) - Method in class org.geon.DatabaseQuery
Try to set the database schema once the database connection port has been connected.
connectionsChanged(Port) - Method in class org.geon.OpenDBConnection
When connecting the dbcon port, trigger the connectionsChanged of the connected actor.
connectionsChanged(Port) - Method in class org.kepler.objectmanager.cache.DataCacheGetActor
Notify this entity that the links to the specified port have been altered.
connectionsChanged(Port) - Method in class org.kepler.objectmanager.cache.DataCachePutActor
Notify this entity that the links to the specified port have been altered.
connectionsChanged(Port) - Method in class ptolemy.actor.AtomicActor
Create new receivers if the port is an input port and there is a director.
connectionsChanged(Port) - Method in class ptolemy.actor.CompositeActor
Invalidate the schedule and type resolution and create new receivers if the specified port is an opaque output port.
connectionsChanged(Port) - Method in class ptolemy.actor.lib.BusAssembler
React to a change in an input port width.
connectionsChanged(Port) - Method in class ptolemy.actor.lib.Distributor
Notify this entity that the links to the specified port have been altered.
connectionsChanged(Port) - Method in class ptolemy.component.ComponentActor
Invalidate the schedule and type resolution and create new receivers if the specified port is an opaque output port.
connectionsChanged(Port) - Method in class ptolemy.domains.ddf.lib.DDFSelect
Pre-calculate the rates to be set in the rate parameter of the input port.
connectionsChanged(Port) - Method in class ptolemy.domains.ddf.lib.DDFSingleTokenCommutator
Pre-calculate the rates to be set in the rate parameter of the input port.
connectionsChanged(Port) - Method in class ptolemy.domains.pn.kernel.NondeterministicMerge
Override the base class to adjust the number of contained actors, if the number is no longer correct.
connectionsChanged(Port) - Method in class ptolemy.kernel.Entity
Notify this entity that the links to the specified port have been altered.
connectorDropped(ConnectorEvent) - Method in class ptolemy.vergil.actor.LinkController.LinkDropper
Called when a connector end is dropped--attach or detach the edge as appropriate.
connectorDropped(ConnectorEvent) - Method in class ptolemy.vergil.modal.TransitionController.LinkDropper
Called when a connector end is dropped.
connectPorts - Variable in class ptolemy.actor.lib.hoc.MobileModel
the Parameter specifies whether to connect the input and output to the inside model.
Console - Class in ptolemy.actor.gui
A tableau that displays Console messages.
Console(PtolemyEffigy, String) - Constructor for class ptolemy.actor.gui.Console
Create a new control panel displaying Console The tableau is itself an entity contained by the effigy and having the specified name.
Console.ConsoleFrame - Class in ptolemy.actor.gui
The frame that is created by an instance of Console.
Console.ConsoleFrame.MyByteArrayOutputStream - Class in ptolemy.actor.gui
Customized ByteArrayOutputStream.
Console.Factory - Class in ptolemy.actor.gui
A factory that creates a control panel to display Console.
ConsoleFrame(Tableau) - Constructor for class ptolemy.actor.gui.Console.ConsoleFrame
Construct a frame to display Console.
consolidate(NamedObj) - Static method in class ptolemy.moml.Documentation
Return as a single string all the documentation associated with the specified object.
Const - Class in ptolemy.actor.lib
Produce a constant output.
Const(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Const
Construct a constant source with the given container and name.
constant(String, boolean) - Static method in class com.jgoodies.forms.layout.Sizes
Creates and returns an instance of ConstantSize from the given encoded size and unit description.
CONSTANT - Static variable in interface ptolemy.data.expr.MatrixParserConstants
RegularExpression Id.
ConstantPublisherPort - Class in ptolemy.actor
This is a specialized output port that publishes constant data sent on the specified named channel.
ConstantPublisherPort(ComponentEntity, String) - Constructor for class ptolemy.actor.ConstantPublisherPort
Construct a constant publisher port with the specified name and container.
Constants - Class in org.kepler.sms
Created by IntelliJ IDEA.
Constants() - Constructor for class org.kepler.sms.Constants
 
Constants - Class in ptolemy.data.expr
A table of named constants that are recognized by the expression parser.
constants() - Static method in class ptolemy.data.expr.Constants
Return a record representation of the constants.
constants() - Static method in class ptolemy.data.expr.UtilityFunctions
Return a record token that contains the names of all the constants and their values.
ConstantSize - Class in com.jgoodies.forms.layout
An implementation of the Size interface that represents constant sizes described by a value and unit, for example: 10 pixel, 15 point or 4 dialog units.
ConstantSize.Unit - Class in com.jgoodies.forms.layout
An ordinal-based serializable typesafe enumeration for units as used in instances of ConstantSize.
constantValue - Variable in class ptolemy.actor.ConstantPublisherPort
The constant value to publish.
constellation - Variable in class ptolemy.actor.lib.comm.ViterbiDecoder
The constellation for soft decoding.
ConstOnce - Class in org.geon
Deprecated.
Use ptolemy.actor.lib.Const instead.
ConstOnce(CompositeEntity, String) - Constructor for class org.geon.ConstOnce
Deprecated.
Construct an actor with the given container and name.
ConstPlaceable - Class in ptolemy.actor.lib.gui
Produce a constant output from an actor that is placeable in a GUI.
ConstPlaceable(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.gui.ConstPlaceable
Construct a constant source with the given container and name.
constrain(Point2D) - Method in class ptolemy.vergil.toolbox.SnapConstraint
Modify the specified point to snap to grid using the local resolution.
constrain(double[]) - Method in class ptolemy.vergil.toolbox.SnapConstraint
Modify the specified point to snap to grid using the local resolution.
constrain(double, double) - Method in class ptolemy.vergil.toolbox.SnapConstraint
Modify the specified point to snap to grid using the local resolution.
constrainBufferSizes - Variable in class ptolemy.domains.sdf.kernel.SDFDirector
If true, then buffer sizes are fixed according to the schedule, and attempts to write to the buffer that cause the buffer to exceed the schedule size result in an exception.
constrainBufferSizes - Variable in class ptolemy.domains.sdf.kernel.SDFScheduler
If true, then buffer sizes are fixed according to the schedule, and attempts to write to the buffer that cause the buffer to exceed the schedule size result in an exception.
constrainPoint(Point2D) - Static method in class ptolemy.vergil.toolbox.SnapConstraint
Modify the specified point to snap to grid using the global default resolution.
constrainPoint(double[]) - Static method in class ptolemy.vergil.toolbox.SnapConstraint
Modify the specified point to snap to grid using the global default resolution.
constrainPoint(double, double) - Static method in class ptolemy.vergil.toolbox.SnapConstraint
Modify the specified point to snap to grid using the global default resolution.
constraint - Variable in class org.kepler.data.netcdf.NetCDFReader
Space-separated list of variables with an optional set of constraints.
Constraint - Interface in org.kepler.objectmanager.data.db
This intergace represents an abstract Constraint in eml2
CONSTRAINT - Static variable in interface org.kepler.objectmanager.data.db.Constraint
 
ConstraintMonitor - Class in ptolemy.data.expr
A contract monitor that decorates each entity in a model with a value parameter and monitors the sum of all such values.
ConstraintMonitor(CompositeEntity, String) - Constructor for class ptolemy.data.expr.ConstraintMonitor
Construct an instance in the given container with the given name.
ConstraintMonitor.ConstraintMonitorAttributes - Class in ptolemy.data.expr
Class containing the decorator attributes that decorate objects.
ConstraintMonitorAttributes(NamedObj, ConstraintMonitor) - Constructor for class ptolemy.data.expr.ConstraintMonitor.ConstraintMonitorAttributes
 
ConstraintMonitorAttributes(NamedObj, String) - Constructor for class ptolemy.data.expr.ConstraintMonitor.ConstraintMonitorAttributes
 
ConstraintMonitorIcon - Class in ptolemy.vergil.icon
An icon providing visual indication when constraints are violated.
ConstraintMonitorIcon(NamedObj, String) - Constructor for class ptolemy.vergil.icon.ConstraintMonitorIcon
Create a new icon with the given name in the given container.
constraintNames() - Method in class org.kepler.util.sql.Table
Get the constraint names.
constraintsChanged(String, CellConstraints) - Method in class org.mlc.swing.layout.ContainerLayout
 
ConstructAssociativeType - Class in ptolemy.actor.util
A function that, given a list of ports, returns a StructuredType of which the fields names and field types correspond with the given ports.
ConstructAssociativeType(Collection<TypedIOPort>, Class<? extends AssociativeType>) - Constructor for class ptolemy.actor.util.ConstructAssociativeType
Construct a new monotonic function.
constructCaches(int) - Method in class ptolemy.domains.sdf.kernel.CachedSDFScheduler
Construct the caches of this scheduler with the given cache size.
constructJSON(Token) - Static method in class ptolemy.actor.lib.conversions.json.TokenToJSON
Construct a string that represents the argument in JSON format.
ConstVariableModelAnalysis - Class in ptolemy.actor.util
An analysis that traverses a model to determine all the constant variables in a hierarchical model.
ConstVariableModelAnalysis() - Constructor for class ptolemy.actor.util.ConstVariableModelAnalysis
Create a dummy analysis for actors that are not contained in a model.
ConstVariableModelAnalysis(Entity) - Constructor for class ptolemy.actor.util.ConstVariableModelAnalysis
Analyze the given model to determine which variables must be constants and which variables may change dynamically during execution.
ConstVariableModelAnalysis(Entity, Set) - Constructor for class ptolemy.actor.util.ConstVariableModelAnalysis
Analyze the given model to determine which variables must be constants and which variables may change dynamically during execution, given that all variables in the given set may change dynamically.
ContainedObjectsIterator() - Constructor for class ptolemy.actor.LazyTypedCompositeActor.ContainedObjectsIterator
Create an iterator over all the contained objects, which for CompositeEntities are attributes, ports, classes entities, and relations.
containedObjectsIterator() - Method in class ptolemy.kernel.CompositeEntity
Return an iterator over contained objects.
ContainedObjectsIterator() - Constructor for class ptolemy.kernel.CompositeEntity.ContainedObjectsIterator
Create an iterator over all the contained objects, which for CompositeEntities are attributes, ports, classes entities, and relations.
containedObjectsIterator() - Method in class ptolemy.kernel.Entity
Return an iterator over contained objects.
ContainedObjectsIterator() - Constructor for class ptolemy.kernel.Entity.ContainedObjectsIterator
Create an iterator over all the contained objects, which for Entities are attributes and then ports.
containedObjectsIterator() - Method in class ptolemy.kernel.util.NamedObj
Return an iterator over contained objects.
ContainedObjectsIterator() - Constructor for class ptolemy.kernel.util.NamedObj.ContainedObjectsIterator
Create an iterator over all the contained objects.
containerEffigy - Variable in class org.sdm.spa.TextualInteractionShell
 
ContainerLayout - Class in org.mlc.swing.layout
This class acts as a surrogate layout manager for the JGoodies (www.jgoodies.com) FormLayout manager.
ContainerLayout(String, String, String) - Constructor for class org.mlc.swing.layout.ContainerLayout
 
containerWorkflowLSID - Variable in class org.kepler.provenance.ProvenanceRecorder
The LSID of the containing workflow.
containerWorkflowName - Variable in class org.kepler.provenance.ProvenanceRecorder
The name of the containing workflow.
ContainmentExtender - Interface in ptolemy.data.expr
An interface to specify the containment relationship as seen by the model designer.
ContainmentExtender(Configurer, String) - Constructor for class ptolemy.domains.modal.kernel.Configurer.ContainmentExtender
Construct a containment extender.
ContainmentExtender - Class in ptolemy.domains.modal.kernel
An implementation of containment extender for modal models as an attribute.
ContainmentExtender(RefinementActor, String) - Constructor for class ptolemy.domains.modal.kernel.ContainmentExtender
Construct a ContainmentExtender attribute with the given name contained by the specified Refinement.
ContainmentExtender(State, String) - Constructor for class ptolemy.domains.modal.kernel.ContainmentExtender
Construct a ContainmentExtender attribute with the given name contained by the specified State.
contains(int) - Method in class org.kepler.objectmanager.library.LibSearchConfiguration
 
contains(Object) - Method in class ptolemy.actor.util.TotallyOrderedSet
Return true if the given element is contained in this set.
contains(Token) - Method in class ptolemy.data.ArrayToken
Return a Boolean token that identifies whether the given token is an element of this array.
contains(Object) - Method in class ptolemy.graph.LabeledList
Return true if the specified object is an element of this list.
containsAll(Collection) - Method in class ptolemy.graph.LabeledList
Returns true if this list contains all of the elements of the specified collection.
containsAttribute(String) - Method in class ptolemy.vergil.toolbox.GraphicElement
Test if this element has an attribute with the given name.
containsEdge(Edge) - Method in class ptolemy.graph.Graph
Return true if the specified edge exists in the graph, and the edge is not hidden in the graph.
containsEdgeWeight(Object) - Method in class ptolemy.graph.Graph
Test if the specified object is an edge weight in this graph.
containsListener(DeletionListener) - Method in class org.kepler.plotting.Row
 
containsName(String) - Method in class org.kepler.provenance.RecordingParameters
Check if the set contains a specific name.
containsName(String) - Method in class org.kepler.workflowrunmanager.WRMDefaults
 
containsNamedAttribute(String) - Method in class org.kepler.objectmanager.data.db.AttributeList
 
containsNode(Node) - Method in class ptolemy.graph.Graph
Return True if the specified node exists in the graph.
containsNodeWeight(Object) - Method in class ptolemy.graph.Graph
Test if the specified object is a node weight in this graph.
containsParameter(Attribute) - Method in class org.kepler.provenance.RecordingParameters
See if set contains a specific parameter.
containsProperty(String, boolean) - Method in class org.kepler.configuration.ConfigurationProperty
return true if this ConfigurationProperty contains a property with the given name..
containsProperty(ConfigurationProperty) - Method in class org.kepler.configuration.ConfigurationProperty
returns true if this property contains a nested property, ignoring: namespaces, modules, originmodules.
containsSupportedDirector(CompositeActor) - Static method in class org.kepler.provenance.ProvenanceRecorder
Returns true if the composite actor contains a director supported by the provenance recorder or no director.
containsTable(String) - Method in class org.kepler.util.sql.Schema
Returns true if schema contains a specific table.
containsWeight(Object) - Method in class ptolemy.graph.ElementList
Test if the specified object is an element weight in this list.
content - Variable in class org.resurgence.actor.SimpleFileReader
The output port, which provides the file contents.
CONTENT_ANY - Static variable in class com.microstar.xml.XmlParser
Constant: the element has a content model of ANY.
CONTENT_ELEMENTS - Static variable in class com.microstar.xml.XmlParser
Constant: the element has element content.
CONTENT_EMPTY - Static variable in class com.microstar.xml.XmlParser
Constant: the element has declared content of EMPTY.
CONTENT_MIXED - Static variable in class com.microstar.xml.XmlParser
Constant: the element has mixed content.
CONTENT_UNDECLARED - Static variable in class com.microstar.xml.XmlParser
Constant: an element has not been declared.
Contents(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.hoc.CatchUpComposite.Contents
 
contents - Variable in class ptolemy.actor.util.TimedEvent
The event object.
contents - Variable in class ptolemy.gui.ComponentDialog
The component contained by this dialog.
CONTENTS - Static variable in class ptolemy.kernel.util.NamedObj
Indicate that the description(int) method should include the contained objects (if any) that the object has.
contentsChanged(ListDataEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBWherePanel
 
context - Variable in class org.sdm.spa.MatchDisplay
 
CONTEXTMENU_TYPE - Static variable in class ptolemy.vergil.toolbox.FigureAction
When the action was fired from a context menu.
ContextMenuFactoryCreator - Class in ptolemy.vergil.basic
An object that can create a tableau for a model.
ContextMenuFactoryCreator(NamedObj, String) - Constructor for class ptolemy.vergil.basic.ContextMenuFactoryCreator
Create a context menu factory with the given name and container.
CONTINUE - Static variable in class ptolemy.actor.lib.CatchExceptionAttribute
String value for the "continue" policy.
CONTINUE - Static variable in interface ptolemy.moml.ErrorHandler
Indicator to skip this element and continue parsing XML.
ContinuousDirector - Class in ptolemy.domains.continuous.kernel
The continuous time domain is a timed domain that supports continuous-time signals, discrete-event signals, and mixtures of the two.
ContinuousDirector(CompositeEntity, String) - Constructor for class ptolemy.domains.continuous.kernel.ContinuousDirector
Construct a director in the given container with the given name.
ContinuousIntegrator - Class in ptolemy.domains.continuous.kernel
The integrator in the continuous domain.
ContinuousIntegrator(CompositeEntity, String) - Constructor for class ptolemy.domains.continuous.kernel.ContinuousIntegrator
Construct an integrator with the specified name and a container.
ContinuousMerge - Class in ptolemy.domains.continuous.lib
A merge actor for the Continuous domain.
ContinuousMerge(CompositeEntity, String) - Constructor for class ptolemy.domains.continuous.lib.ContinuousMerge
Construct an actor in the specified container with the specified name.
ContinuousODESolver - Class in ptolemy.domains.continuous.kernel
Abstract base class for ODE solvers.
ContinuousODESolver() - Constructor for class ptolemy.domains.continuous.kernel.ContinuousODESolver
 
ContinuousScheduler - Class in ptolemy.domains.continuous.kernel
The Static scheduler for the Continuous domain.
ContinuousScheduler(ContinuousDirector, String) - Constructor for class ptolemy.domains.continuous.kernel.ContinuousScheduler
Construct a scheduler in the given container with the given name.
ContinuousStatefulComponent - Interface in ptolemy.actor.continuous
Interface for actors and directors that have tentative state that can be rolled back.
ContinuousStatefulDirector - Interface in ptolemy.actor.continuous
Interface for directors that have a getCurrentStepSize() method and have state that can be rolled back.
ContinuousStepSizeController - Interface in ptolemy.actor.continuous
Interface for actors and directors that control integration step sizes.
ContinuousTimeDelay - Class in ptolemy.domains.continuous.lib
Delay the input by a specified amount of time.
ContinuousTimeDelay(CompositeEntity, String) - Constructor for class ptolemy.domains.continuous.lib.ContinuousTimeDelay
Construct an actor with the specified container and name.
ContinuousTransferFunction - Class in ptolemy.domains.continuous.lib
A transfer function in the continuous time domain.
ContinuousTransferFunction(CompositeEntity, String) - Constructor for class ptolemy.domains.continuous.lib.ContinuousTransferFunction
Construct the composite actor with a name and a container.
ContinuousTransferFunction(Workspace) - Constructor for class ptolemy.domains.continuous.lib.ContinuousTransferFunction
Construct a ContinuousTransferFunction in the specified workspace with no container and an empty string as a name.
contPrompt - Variable in class org.sdm.spa.gui.DoubleShellTextAreaPanel
Prompt to use on continuation lines.
contPrompt - Variable in class ptolemy.gui.ShellTextArea
Prompt to use on continuation lines.
contributors - Variable in class ptolemy.vergil.kernel.attributes.IDAttribute
The contributors of the model.
control - Variable in class ptolemy.actor.lib.BooleanSelect
Input that selects one of the other input ports.
control - Variable in class ptolemy.actor.lib.BooleanSwitch
Input that selects one of the other input ports.
control - Variable in class ptolemy.actor.lib.hoc.Case
The input port-parameter on which the control token is provided.
control - Variable in class ptolemy.actor.lib.Select
Input port for control tokens, which specify the output channel to produce data on.
control - Variable in class ptolemy.actor.lib.Switch
Input port for control tokens, which specify the output channel to produce data on.
control - Variable in class ptolemy.domains.ddf.lib.DDFBooleanSelect
Input that selects one of the other input ports.
control - Variable in class ptolemy.domains.ddf.lib.DDFSelect
The input port for control tokens, which specifies the input channels to read the tokens from.
control - Variable in class ptolemy.domains.modal.modal.Case
Deprecated.
The input port-parameter on which the control token is provided.
control - Variable in class ptolemy.vergil.actor.lib.LEDMatrix
True if the LED is to be illuminated.
control_tokenConsumptionRate - Variable in class ptolemy.actor.lib.BooleanSelect
This parameter provides token consumption rate for control.
control_tokenConsumptionRate - Variable in class ptolemy.domains.ddf.lib.DDFBooleanSelect
This parameter provides token consumption rate for control.
control_tokenConsumptionRate - Variable in class ptolemy.domains.ddf.lib.DDFSelect
This parameter provides token consumption rate for control.
ControlAttribute - Class in org.kepler.webview.actor
TODO: notify client of errors TODO: add pause, resume?
ControlAttribute(NamedObj, String) - Constructor for class org.kepler.webview.actor.ControlAttribute
 
controller - Variable in class org.ecoinformatics.seek.ecogrid.EcogridPreferencesTab
Description of the Field
controllerName - Variable in class ptolemy.domains.modal.kernel.FSMDirector
Attribute specifying the name of the mode controller in the container of this director.
CONTROLS_ONLY - Static variable in class ptolemy.actor.gui.ModelPane
Indicator to create only buttons.
CONVERGENT - Static variable in class ptolemy.math.Rounding
Singleton implementing convergent rounding strategy.
ConversionParameters() - Constructor for class ptolemy.matlab.Engine.ConversionParameters
 
ConversionUtilities - Class in ptolemy.data.expr
This class contains a series of static methods that facilitate the runtime conversion of tokens to and from Java representations that are not tokens.
ConversionUtilities() - Constructor for class ptolemy.data.expr.ConversionUtilities
 
convert(Token) - Static method in class org.geon.DBConnectionToken
Convert the specified token into an instance of DBConnectionToken.
convert(Token) - Method in class org.geon.DBConnectionToken.DBConnectionType
Convert the specified token to a token having the type represented by this object.
convert(Token) - Method in class org.kepler.gis.data.BoundingBoxToken.BoundingBoxType
Convert the specified token into a BoundingBox token.
convert(Token) - Method in class org.kepler.gis.data.GISToken.GISType
 
convert(Token) - Method in class org.kepler.gis.data.RasterToken.RasterType
 
convert(Token) - Method in class org.kepler.gis.data.VectorToken.VectorType
 
convert(CompositeActor) - Method in class ptolemy.actor.GraphReader
Convert the model represented by a CompositeActor into a directed, weighted graph.
convert(Token) - Method in class ptolemy.actor.IOPort
Convert the specified token into a token acceptable to this port.
convert(Token) - Method in class ptolemy.actor.lib.hoc.IterateOverArray.IteratePort
Override the base class to convert the token to the element type rather than to the type of the port, unless the port is of type GENERAL, in which case, no conversion is necessary.
convert(Token) - Method in class ptolemy.actor.TypedIOPort
Convert the specified token into a token with type equal to the type returned by getType().
convert(Token) - Static method in class ptolemy.data.BooleanMatrixToken
Convert the specified token into an instance of BooleanMatrixToken.
convert(Token) - Static method in class ptolemy.data.BooleanToken
Convert the specified token into an instance of BooleanToken.
convert(Token) - Static method in class ptolemy.data.ComplexMatrixToken
Convert the specified token into an instance of ComplexMatrixToken.
convert(Token) - Static method in class ptolemy.data.ComplexToken
Convert the specified token into an instance of ComplexToken.
convert(Token) - Static method in class ptolemy.data.DateToken
Convert the specified token into an instance of DateToken.
convert(Token) - Static method in class ptolemy.data.DoubleMatrixToken
Convert the specified token into an instance of DoubleMatrixToken.
convert(Token) - Static method in class ptolemy.data.DoubleToken
Convert the specified token into an instance of DoubleToken.
convert(Token) - Method in class ptolemy.data.expr.CachedMethod.ArgumentConversion
Convert the given token into an object that can be used to invoke a method through the reflection mechanism.
convert(Token) - Method in class ptolemy.data.expr.CachedMethod.TypeArgumentConversion
Convert the given token into an object that can be used to invoke a method through the reflection mechanism.
convert(Token) - Static method in class ptolemy.data.FixMatrixToken
Convert the specified token into an instance of FixMatrixToken.
convert(Token) - Static method in class ptolemy.data.FixToken
Convert the specified token into an instance of FixToken.
convert(Token) - Static method in class ptolemy.data.FloatToken
Convert the specified token into an instance of FloatToken.
convert(Token) - Static method in class ptolemy.data.IntMatrixToken
Convert the specified token into an instance of IntMatrixToken.
convert(ScalarToken, int) - Static method in class ptolemy.data.IntMatrixToken
Convert the specified scalar token into an instance of IntMatrixToken.
convert(Token) - Static method in class ptolemy.data.IntToken
Convert the specified token into an instance of IntToken.
convert(Token) - Static method in class ptolemy.data.LongMatrixToken
Convert the specified token into an instance of LongMatrixToken.
convert(ScalarToken, int) - Static method in class ptolemy.data.LongMatrixToken
Convert the specified scalar token into an instance of LongMatrixToken.
convert(Token) - Static method in class ptolemy.data.LongToken
Convert the specified token into an instance of LongToken.
convert(Token) - Static method in class ptolemy.data.ObjectToken
Convert the specified token into an instance of ObjectToken.
convert(Token) - Static method in class ptolemy.data.PetiteToken
Convert the specified token into an instance of PetiteToken.
convert(Token) - Static method in class ptolemy.data.ShortToken
Convert the specified token into an instance of ShortToken.
convert(Token) - Static method in class ptolemy.data.StringToken
Convert the specified token into an instance of StringToken.
convert(Token) - Method in class ptolemy.data.type.ActorType
Convert the specified token to a token having the type represented by this object.
convert(Token) - Method in class ptolemy.data.type.ArrayType
Convert the argument token into an ArrayToken having this type, if lossless conversion can be done.
convert(Token) - Method in class ptolemy.data.type.BaseType.ArrayBottomType
 
convert(Token) - Method in class ptolemy.data.type.BaseType.BooleanType
 
convert(Token) - Method in class ptolemy.data.type.BaseType.ComplexType
 
convert(Token) - Method in class ptolemy.data.type.BaseType
Convert the specified token to a token having the type represented by this object.
convert(Token) - Method in class ptolemy.data.type.BaseType.DateType
 
convert(Token) - Method in class ptolemy.data.type.BaseType.DoubleType
 
convert(Token) - Method in class ptolemy.data.type.BaseType.EventType
 
convert(Token) - Method in class ptolemy.data.type.BaseType.FloatType
 
convert(Token) - Method in class ptolemy.data.type.BaseType.GeneralType
 
convert(Token) - Method in class ptolemy.data.type.BaseType.IntType
 
convert(Token) - Method in class ptolemy.data.type.BaseType.LongType
 
convert(Token) - Method in class ptolemy.data.type.BaseType.NilType
 
convert(Token) - Method in class ptolemy.data.type.BaseType.PetiteType
 
convert(Token) - Method in class ptolemy.data.type.BaseType.ScalarType
 
convert(Token) - Method in class ptolemy.data.type.BaseType.ShortType
 
convert(Token) - Method in class ptolemy.data.type.BaseType.StringType
 
convert(Token) - Method in class ptolemy.data.type.BaseType.UnknownType
 
convert(Token) - Method in class ptolemy.data.type.BaseType.UnsignedByteType
 
convert(Token) - Method in class ptolemy.data.type.BaseType.UnsizedFixType
 
convert(Token) - Method in class ptolemy.data.type.BaseType.XmlTokenType
 
convert(Token) - Method in class ptolemy.data.type.FixType
Convert the specified token to a token having the type represented by this object.
convert(Token) - Method in class ptolemy.data.type.FunctionType
Convert the argument token into a FunctionToken having this type, if lossless conversion can be done.
convert(Token) - Method in class ptolemy.data.type.MatrixType.BooleanMatrixType
 
convert(Token) - Method in class ptolemy.data.type.MatrixType.ComplexMatrixType
 
convert(Token) - Method in class ptolemy.data.type.MatrixType
If the argument is an instance of this class or a subclass, then return the token.
convert(Token) - Method in class ptolemy.data.type.MatrixType.DoubleMatrixType
 
convert(Token) - Method in class ptolemy.data.type.MatrixType.FixMatrixType
 
convert(Token) - Method in class ptolemy.data.type.MatrixType.IntMatrixType
 
convert(Token) - Method in class ptolemy.data.type.MatrixType.LongMatrixType
 
convert(Token) - Method in class ptolemy.data.type.ObjectType
Convert the specified token into a token having the type represented by this object.
convert(Token) - Method in class ptolemy.data.type.RecordType
Convert the argument token into a RecordToken having this type, if compatible.
convert(Token) - Method in class ptolemy.data.type.test.TestToken.TestType
Convert the specified token to a token having the type represented by this object.
convert(Token) - Method in class ptolemy.data.type.TupleType
Convert the argument token into an ArrayToken having this type, if losslessly conversion can be done.
convert(Token) - Method in interface ptolemy.data.type.Type
Convert the specified token into a token having the type represented by this object.
convert(Token) - Method in class ptolemy.data.type.UnionType
Convert the argument token into a UnionToken having this type, if lossless conversion can be done.
convert(Token) - Static method in class ptolemy.data.UnsignedByteToken
Convert the specified token into an instance of UnsignedByteToken.
convert(Token) - Static method in class ptolemy.data.XMLToken
Convert the specified token into an instance of XMLToken.
convert(TypedCompositeActor, int) - Method in class ptolemy.moml.ConvertToLazy
Convert the model.
convertArrayTokenToObject(ArrayToken) - Static method in class org.kepler.spark.stub.StubUtilities
Convert ArrayToken to an array of objects.
convertAttributeToToken(Attribute) - Static method in class org.kepler.dataproxy.datasource.opendap.AttTypeMapper
 
convertAttributeToType(Attribute) - Static method in class org.kepler.dataproxy.datasource.opendap.AttTypeMapper
 
ConvertColumns - Class in org.kepler.spark.mllib
 
ConvertColumns(CompositeEntity, String) - Constructor for class org.kepler.spark.mllib.ConvertColumns
 
Converter - Interface in org.kepler.webview.data
 
Converter - Class in ptolemy.actor.lib.conversions
This actor is a base class for converters.
Converter(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.conversions.Converter
Construct an actor with the given container and name.
convertFileFormat(File, File, Integer) - Static method in class org.kepler.gis.util.RasterUtilities
Convert raster file formats using gdal_translate.
convertFromToken(Token) - Method in class org.kepler.webview.data.TokenConverter
Convert data from a Ptolemy token.
convertJavaTypeToToken(Object) - Static method in class ptolemy.data.expr.ConversionUtilities
Convert a java object to a corresponding Token.
convertJavaTypeToTokenType(Class) - Static method in class ptolemy.data.expr.ConversionUtilities
Convert a java class, representing a Java type, to a corresponding instance of a ptolemy type object, as consistent with the convertJavaTypeToToken method.
convertListsToTupleList(List<?>, List<?>, List<Tuple2<Object, Object>>) - Static method in class org.kepler.spark.stub.StubUtilities
Convert lists of keys and values to a list of Tuple2s.
convertPactDataToObject(Record, int, Class<? extends Value>) - Static method in class org.kepler.stratosphere.stub.StubUtilities
Convert PACT data to an object.
convertPactDataToToken(Record, int, Class<? extends Value>) - Static method in class org.kepler.stratosphere.stub.StubUtilities
Convert PACT data to a token.
convertPactDataToToken(Iterator<Record>, int, Class<? extends Value>) - Static method in class org.kepler.stratosphere.stub.StubUtilities
Convert PACT data to a token.
convertRecordArrayToHadoopType(ArrayType, String) - Static method in class org.kepler.hadoop.util.StubUtilities
Convert a token record array type to hadoop data type.
convertRecordToHadoopType(RecordType, String) - Static method in class org.kepler.hadoop.util.StubUtilities
Convert a token record type to hadoop data type.
convertReport2AWT(ReportInstance, InputStream) - Static method in class org.kepler.reporting.rio.fop.ReportRenderer
Used for embedding a viewer pane in swing applications
convertReport2FO(ReportInstance, File, File) - Static method in class org.kepler.reporting.rio.fop.ReportRenderer
 
convertReport2HTML(ReportInstance, File, File) - Static method in class org.kepler.reporting.rio.fop.ReportRenderer
Converts a Report object to a PDF file.
convertReport2PDF(ReportInstance, File, InputStream) - Static method in class org.kepler.reporting.rio.fop.ReportRenderer
Converts a Report object to a PDF file.
convertReport2XML(ReportLayout, File) - Static method in class org.kepler.reporting.rio.fop.ReportRenderer
 
convertReport2XML(ReportLayout, OutputStream) - Static method in class org.kepler.reporting.rio.fop.ReportRenderer
Converts a Report object to XML.
convertResultsToCollector(List<?>, List<?>, Collector<Record>) - Static method in class org.kepler.stratosphere.stub.StubUtilities
Write lists of Java Object keys and values to a Collector.
convertStreamToString(InputStream) - Static method in class org.kepler.kar.handlers.WorkflowRunEntryHandler
 
convertStreamToString(InputStream) - Static method in class org.kepler.util.FileUtil
 
convertToArrayToken(Iterator<Writable>) - Static method in class org.kepler.hadoop.util.StubUtilities
Convert data to a token.
convertToDouble - Variable in class org.kepler.spark.mllib.VectorAssemble
Option to convert all data columns to type double
convertToDouble() - Method in class ptolemy.data.FixToken
Return the fixed point value of this token as a double.
convertToHadoopData(Token) - Static method in class org.kepler.hadoop.util.StubUtilities
Convert a token to hadoop data.
convertToHadoopType(Type) - Static method in class org.kepler.hadoop.util.StubUtilities
Convert a token type to hadoop data type.
convertToHadoopType(String) - Static method in class org.kepler.hadoop.util.StubUtilities
Convert a token type (string type) to hadoop data type.
convertTokenToCollector(List<Token>, Collector<Record>) - Static method in class org.kepler.stratosphere.stub.StubUtilities
Convert a token to PACT data and add to a Collector.
convertTokenToJavaType(Token) - Static method in class ptolemy.data.expr.ConversionUtilities
Convert a Token to a corresponding Java object.
convertTokenToList(List<Token>, List<KeyValuePair>) - Static method in class org.kepler.hadoop.util.StubUtilities
Convert a token to hadoop data and add to a Collector.
convertTokenToObject(Token) - Static method in class org.kepler.spark.stub.StubUtilities
Convert a token to a Java Object.
convertTokenToPactKeyData(Token) - Static method in class org.kepler.stratosphere.stub.StubUtilities
Convert a token to PACT Key data.
convertTokenToPactValueData(Token) - Static method in class org.kepler.stratosphere.stub.StubUtilities
Convert a token to PACT Value data.
convertTokenToTupleList(List<Token>, List<Tuple2<Object, Object>>) - Static method in class org.kepler.spark.stub.StubUtilities
Convert a list of record tokens into a list of Tuple2s containing Java Objects.
convertTokenTypeToJavaType(Type) - Static method in class ptolemy.data.expr.ConversionUtilities
Convert the given ptolemy type object to a java class representing a java type.
ConvertToLazy - Class in ptolemy.moml
Read a specified MoML file and convert all instances of TypedCompositeActor that contain more than a specified number of entities to LazyTypedCompositeActor.
ConvertToLazy(String, int) - Constructor for class ptolemy.moml.ConvertToLazy
Parse the xml file and convert it.
convertToObject(Object) - Static method in class org.kepler.spark.stub.StubUtilities
Convert from a (possible) Hadoop Writable to an object.
convertToTaggedType(Type) - Static method in class org.kepler.hadoop.util.StubUtilities
Convert a token type to hadoop data type.
convertToToken(Object) - Static method in class org.kepler.hadoop.util.StubUtilities
Convert hadoop data to a token.
convertToToken(Object, Class<?>) - Static method in class org.kepler.hadoop.util.StubUtilities
Convert hadoop data to a token.
convertToToken(Object) - Static method in class org.kepler.spark.stub.StubUtilities
Convert Hadoop data types or Java Objects to a Ptolemy token.
convertToToken(String, Type) - Method in class org.kepler.webview.data.TokenConverter
Convert data to a Ptolemy token with the specified type.
convertValueToText(Object, boolean, boolean, boolean, int, boolean) - Method in class ptolemy.vergil.tree.PTree
Give a string representation of the node value.
convertXML2FO(File, File, File) - Static method in class org.kepler.reporting.rio.fop.ReportRenderer
Converts an XML file to an XSL-FO file using JAXP (XSLT).
convertXML2Report(File) - Static method in class org.kepler.reporting.rio.fop.ReportRenderer
 
convertXML2Report(InputStream) - Static method in class org.kepler.reporting.rio.fop.ReportRenderer
 
convertXMLStr2DOM(String) - Static method in class org.ecoinformatics.seek.querybuilder.DBUIUtils
Convert/Parses an XML string into a DOM tree
ConvexHull - Class in org.ecoinformatics.seek.gis.java_gis
 
ConvexHull() - Constructor for class org.ecoinformatics.seek.gis.java_gis.ConvexHull
 
ConvexHull(File) - Constructor for class org.ecoinformatics.seek.gis.java_gis.ConvexHull
 
ConvolutionalCoder - Class in ptolemy.actor.lib.comm
Encode an input sequence with a convolutional code.
ConvolutionalCoder(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.comm.ConvolutionalCoder
Construct an actor with the given container and name.
convolve(double[], double[]) - Static method in class ptolemy.math.SignalProcessing
Return a new array that is the convolution of the two argument arrays.
convolve(Complex[], Complex[]) - Static method in class ptolemy.math.SignalProcessing
Return a new array that is the convolution of two complex arrays.
CookbookAction - Class in org.kepler.gui
This action opens the Kelper Cookbook, which is an html file at the classpath-relative location defined by COOKBOOK_URL_STR
CookbookAction(TableauFrame) - Constructor for class org.kepler.gui.CookbookAction
Constructor
Cookie - Class in org.json
Convert a web browser cookie specification to a JSONObject and back.
Cookie() - Constructor for class org.json.Cookie
 
CookieList - Class in org.json
Convert a web browser cookie list string to a JSONObject and back.
CookieList() - Constructor for class org.json.CookieList
 
coordinateNames - Variable in class org.geon.Diagrams
The coordinates of the referenced diagram.
coordinateNames - Variable in class org.geon.GetPoint
The coordinates/minerals of the classification diagram.
coordinates - Variable in class org.geon.Get2DPoint
An array of the coordinates to be evaluated.
coordinates - Variable in class org.geon.StringToPolygon
 
copy(Object) - Static method in class org.kepler.reporting.rio.util.SerializeDeepCopy
Returns a copy of the object, or null if the object cannot be serialized.
copy(ConnectionDetails, String, ConnectionDetails, String, boolean) - Method in class org.sdm.spa.actors.transport.FileCopierBase
Generic copy method that does the initial input validation and calls the copyTo, copyFrom or copyRemote of the appropriate FileCopier subclass.
copy() - Method in class ptolemy.moml.unit.Solution
Make a copy of this solution.
copy() - Method in class ptolemy.moml.unit.Unit
Make a copy of this Unit.
copy() - Method in class ptolemy.moml.unit.UnitEquation
Make a copy where the left and right sides are alos copied.
copy() - Method in class ptolemy.moml.unit.UnitExpr
Create a copy of this UnitExpr.
copy() - Method in class ptolemy.moml.unit.UnitTerm
Make a shallow copy of this UnitTerm.
copy() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Get the currently selected objects from this document, if any, and place them on the clipboard in MoML format.
copy() - Method in class ptolemy.vergil.modal.FSMGraphFrame
Get the currently selected objects from this document, if any, and place them on the clipboard in MoML format.
COPY_ATTRIBUTE_PREFIX - Static variable in class org.kepler.moml.KeplerMetadataExtractor
 
COPY_FILE_TO_CACHE - Static variable in class org.kepler.objectmanager.cache.DataCacheFileObject
 
CopyAction() - Constructor for class ptolemy.vergil.basic.BasicGraphFrame.CopyAction
Create a new action to copy the current selection.
copyAllProperties(String, String, String) - Static method in class org.kepler.configuration.ConfigurationUtilities
Copy all the properties in a namespace from one module to another.
copyArea(int, int, int, int, int, int) - Method in class ptolemy.plot.EPSGraphics
 
CopyCatIcon - Class in ptolemy.vergil.icon
This is an icon that copies the icon of the last entity contained by the same container, if there is one, and behaves like the base class if not.
CopyCatIcon(NamedObj, String) - Constructor for class ptolemy.vergil.icon.CopyCatIcon
Create a new icon with the given name in the given container.
copyColumn(String, String, String) - Method in class org.kepler.util.sql.DatabaseType
Copy the contents between columns in the same table.
copyDirectory(File, File, boolean) - Static method in class org.kepler.util.FileUtil
Copy a file or directory to another.
copyEcoGridService(EcoGridService) - Static method in class org.ecoinformatics.seek.ecogrid.EcoGridService
This method will copy a ecogrid service to another one.
copyFrom(String, Collection, File, boolean) - Method in interface org.kepler.ssh.ExecInterface
Copy files from a local/remote directory to a local path Input: 'files' is a Collection of files of type String (!
copyFrom(String, File, boolean) - Method in interface org.kepler.ssh.ExecInterface
Copy a local/remote file into a local file Input: 'sourcePath' of type String (can be a directory or filename) 'localPath' is either a directory or filename Only if 'recursive' is set, will directories copied recursively.
copyFrom(String, File, boolean) - Method in class org.kepler.ssh.GsiSshExec
 
copyFrom(String, Collection, File, boolean) - Method in class org.kepler.ssh.LocalExec
Copy files from a directory to a local path Input: 'files' is a Collection of files of type String (!
copyFrom(String, File, boolean) - Method in class org.kepler.ssh.LocalExec
Copy a local file into a local file Input: 'sfile' of type String (can be a directory or filename) 'localPath' is either a directory or filename Only if 'recursive' is set, will directories copied recursively.
copyFrom(String, File, boolean) - Method in class org.kepler.ssh.RemoteExec
 
copyFrom(String, Collection, File, boolean) - Method in class org.kepler.ssh.RemoteExec
Copy remote files from a remote directory to a local path Input: 'files' is a Collection of files of type String (!
copyFrom(String, File, boolean) - Method in class org.kepler.ssh.SftpExec
Copies file/directory from a remote machine to local machine using Jsch sftp channel.
copyFrom(String, File, boolean) - Method in class org.kepler.ssh.SshExec
Copy a remote file into a local file Input: 'rfile' of type String (can be a directory or filename) 'localPath' is either a directory or filename Only if 'recursive' is set, will directories copied recursively.
copyFrom(ConnectionDetails, String, String, boolean) - Method in class org.sdm.spa.actors.transport.BbcpCopier
 
copyFrom(ConnectionDetails, String, String, boolean) - Method in class org.sdm.spa.actors.transport.FileCopierBase
Copies file from a remote host to local machine
copyFrom(ConnectionDetails, String, String, boolean) - Method in class org.sdm.spa.actors.transport.LocalFileCopier
 
copyFrom(ConnectionDetails, String, String, boolean) - Method in class org.sdm.spa.actors.transport.ScpCopier
 
copyFrom(ConnectionDetails, String, String, boolean) - Method in class org.sdm.spa.actors.transport.SftpCopier
 
copyFrom(ConnectionDetails, String, String, boolean) - Method in class org.sdm.spa.actors.transport.SrmliteCopier
 
copyJavaScriptFiles - Variable in class ptolemy.vergil.basic.export.web.WebExportParameters
If true, then make an exported web page stand alone.
copyJavaScriptFiles - Variable in class ptolemy.vergil.basic.ExportParameters
If true, then make an exported web page stand alone.
copyJavaScriptFilesIfNeeded(BasicGraphFrame, ExportParameters) - Static method in class ptolemy.vergil.basic.export.html.ExportHTMLAction
If parameters.copyJavaScriptFiles is true and the Java property ptolemy.ptII.exportHTML.usePtWebsite is false, then copy the required JavaScript files into the target directory given in the parameters argument.
copyLocal(String, String, boolean) - Method in class org.sdm.spa.actors.transport.FileCopierBase
Copies files to destination path on the same machine.
copyLocalOnRemoteMachine(ConnectionDetails, String, ConnectionDetails, String, boolean) - Method in class org.sdm.spa.actors.transport.FileCopierBase
Connects to the remote machines and execute a 'cp' command to copy files to destination dir on the same remote machine
copyNormalizedKey(MemorySegment, int, int) - Method in class org.kepler.stratosphere.type.ByteArray
 
copyProperties(String, String, String, String) - Static method in class org.kepler.configuration.ConfigurationUtilities
Copy a property or set of properties from one module to another using the default namespace.
copyProperties(String, String, String, String, String, boolean) - Static method in class org.kepler.configuration.ConfigurationUtilities
Copy a property or set of properties from one module to another for a specific namespace.
copyPropertiesToIndices(String, String, String, String, String, ArrayList<Integer>) - Static method in class org.kepler.configuration.ConfigurationUtilities
Copy a property or set of properties from one module to specific top level indices of another for a specific namespace.
copyRemote(ConnectionDetails, String, ConnectionDetails, String, boolean) - Method in class org.sdm.spa.actors.transport.BbcpCopier
 
copyRemote(ConnectionDetails, String, ConnectionDetails, String, boolean) - Method in class org.sdm.spa.actors.transport.FileCopierBase
Copies files between two remote machines.
copyRemote(ConnectionDetails, String, ConnectionDetails, String, boolean) - Method in class org.sdm.spa.actors.transport.LocalFileCopier
 
copyRemote(ConnectionDetails, String, ConnectionDetails, String, boolean) - Method in class org.sdm.spa.actors.transport.ScpCopier
 
copyRemote(ConnectionDetails, String, ConnectionDetails, String, boolean) - Method in class org.sdm.spa.actors.transport.SftpCopier
 
copyRemote(ConnectionDetails, String, ConnectionDetails, String, boolean) - Method in class org.sdm.spa.actors.transport.SrmliteCopier
 
CopyResult() - Constructor for class org.sdm.spa.actors.transport.FileCopierBase.CopyResult
Default constructor.
CopyResult(int, String, String) - Constructor for class org.sdm.spa.actors.transport.FileCopierBase.CopyResult
 
copySelectableEcoGridService(SelectableEcoGridService) - Static method in class org.ecoinformatics.seek.ecogrid.SelectableEcoGridService
This method will copy a ecogrid service to another one.
copyTo(Collection, String, boolean) - Method in interface org.kepler.ssh.ExecInterface
Copy local files to a local/remote directory Input: files is a Collection of files of type File, targetPath is either a directory in case of several files, or it is either a dir or filename in case of one single local file recursive: true if you want traverse directories The files can have wildcards in their names but not in their path.
copyTo(File, String, boolean) - Method in interface org.kepler.ssh.ExecInterface
Copy a local file to a local/remote directory Input: file of type File (which can be a directory) The input can have wildcards in its name but not in its path. targetPath is either a directory or filename
copyTo(Collection, String, boolean) - Method in class org.kepler.ssh.LocalExec
Copy local files to a local/remote directory Input: files is a Collection of files of type File, targetPath is either a directory in case of several files, or it is either a dir or filename in case of one single local file recursive: true if you want traverse directories
copyTo(File, String, boolean) - Method in class org.kepler.ssh.LocalExec
Copy a local file to a local directory/path Input: file of type File (which can be a directory).
copyTo(Collection, String, boolean) - Method in class org.kepler.ssh.RemoteExec
Copy local files to a remote directory Input: files is a Collection of files of type File, targetPath is either a directory in case of several files, or it is either a dir or filename in case of one single local file recursive: true if you want traverse directories
copyTo(File, String, boolean) - Method in class org.kepler.ssh.RemoteExec
Copy a local file to a remote directory/path Input: file of type File (which can be a directory).
copyTo(File, String, boolean) - Method in class org.kepler.ssh.SftpExec
Copies files/directories from local machine to remote host
copyTo(String, ConnectionDetails, String, boolean) - Method in class org.sdm.spa.actors.transport.BbcpCopier
 
copyTo(String, ConnectionDetails, String, boolean) - Method in class org.sdm.spa.actors.transport.FileCopierBase
Copies files from local machine to a remote host
copyTo(String, ConnectionDetails, String, boolean) - Method in class org.sdm.spa.actors.transport.LocalFileCopier
 
copyTo(String, ConnectionDetails, String, boolean) - Method in class org.sdm.spa.actors.transport.ScpCopier
 
copyTo(String, ConnectionDetails, String, boolean) - Method in class org.sdm.spa.actors.transport.SftpCopier
 
copyTo(String, ConnectionDetails, String, boolean) - Method in class org.sdm.spa.actors.transport.SrmliteCopier
 
copyUnitsArray(int[]) - Static method in class ptolemy.data.unit.UnitUtilities
Return a copy of the given units array.
CORE_DB_STR - Static variable in class org.kepler.objectmanager.lsid.LSIDGenerator
The name of the database.
CORE_SITE - Static variable in class org.kepler.hadoop.actor.HDFSLoader
 
CORE_SITE - Static variable in class org.kepler.hadoop.actor.HDFSRemover
 
CORE_SITE - Static variable in class org.kepler.hadoop.actor.HDFSUnLoader
 
CORE_SITE - Static variable in class org.kepler.hadoop.actor.HDFSWriter
 
CORE_SITE - Static variable in class org.kepler.hadoop.director.HadoopEngine
 
correctExceptionMessage - Variable in class ptolemy.actor.lib.TestExceptionAttribute
The correct exception message to be compared against.
correctExceptionMessage - Variable in class ptolemy.actor.lib.TestExceptionHandler
Deprecated.
The correct exception message to be compared against.
correctValues - Variable in class ptolemy.actor.lib.NonStrictTest
A matrix specifying what the input should be.
correctValues - Variable in class ptolemy.actor.lib.PublisherNonStrictTest
A matrix specifying what the input should be.
CORRUPTED - Static variable in class ptolemy.actor.Manager
Indicator that the model may be corrupted.
cos() - Method in class ptolemy.math.Complex
Return the cosine of this complex number.
cos(Complex) - Static method in class ptolemy.math.Complex
Return the cosine of the given complex number.
cosh() - Method in class ptolemy.math.Complex
Return the hyperbolic cosine of this complex number.
cosh(Complex) - Static method in class ptolemy.math.Complex
Return the hyperbolic cosine of the given complex number.
cosh(double) - Static method in class ptolemy.math.ExtendedMath
Return the hyperbolic cosine of the argument.
cot() - Method in class ptolemy.math.Complex
Return the cotangent of this complex number.
cot(Complex) - Static method in class ptolemy.math.Complex
Return the cotangent of the given complex number.
count - Variable in class org.geon.ValidationThread
 
count - Variable in class org.kepler.spark.mllib.GetLiveMeasurements
 
count - Variable in class org.kepler.spark.mllib.RemoveNulls
Number of rows of the filtered dataset.
count - Variable in class org.kepler.spark.mllib.RemoveRowsWithNulls
Number of rows of the filtered dataset.
count - Variable in class org.kepler.spark.mllib.SparkSQLQuery
Number of Rows in the DataFrame
count - Variable in class org.sdm.spa.FASTACounter
The number of FASTA entries.
count(TypedCompositeActor) - Method in class ptolemy.moml.ConvertToLazy
Count the number of contained entities that have not already been made lazy.
countDB() - Method in class org.kepler.objectmanager.cache.CacheManager
debug method to count the contents of the table * @throws CacheException
Counter - Class in ptolemy.actor.lib
This actor implements an up-down counter of received tokens.
Counter(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Counter
Construct an actor with the given container and name.
counter - Variable in class ptolemy.actor.lib.test.LoopTest2
The Point (Lat,Long) the user selected from the map
Counter - Class in ptolemy.component.test
This component implements an up-down counter.
Counter(CompositeEntity, String) - Constructor for class ptolemy.component.test.Counter
Construct an actor with the given container and name.
COUNTERCLOCKWISE - Static variable in class ptolemy.vergil.toolbox.RotateOrFlipPorts
Indicator to rotate counterclockwise.
countItems() - Method in class org.kepler.objectmanager.library.LibIndex
Count how many rows there are in the LIBRARY_INDEX table.
countItems() - Method in class org.kepler.objectmanager.library.LibSearch
Count how many rows there are in the LIBRARY_SEARCH table.
countRowsForCurrentAuthNamespace() - Method in class org.kepler.objectmanager.lsid.LSIDGenerator
Return the number of rows in the LSID_GENERATOR table.
countSiteDataVariables() - Method in class org.ROADnet.OrbSensorDataSource
 
countSites() - Method in class org.ROADnet.OrbSensorDataSource
 
CountTrues - Class in ptolemy.domains.sdf.lib
Read the given number of input booleans and output the number that are true.
CountTrues(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.CountTrues
Construct an actor with the given container and name.
CountWords() - Constructor for class org.kepler.spark.examples.JavaWordCount.CountWords
 
CountWordsMap() - Constructor for class org.kepler.spark.examples.JavaWordCount.CountWordsMap
 
coverageValue() - Method in class org.kepler.gis.data.RasterToken
Get the coverage.
CoverBoundingBox - Class in org.kepler.gis.actor.bbox
An actor that covers a bounding box with non-overlapping regions each whose side is less than a maximum length.
CoverBoundingBox(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.bbox.CoverBoundingBox
 
CParseTreeCodeGenerator - Class in ptolemy.data.expr
This class visits parse trees and generates soot instructions that evaluate the parse tree.
CParseTreeCodeGenerator() - Constructor for class ptolemy.data.expr.CParseTreeCodeGenerator
 
CPO<T> - Interface in ptolemy.graph
An interface defining the operations on complete partial order (CPO).
CPO.BoundType - Enum in ptolemy.graph
An enumeration type to represent the two different types of bounds that can be calculated on a set of nodes in a CPO; either a greatest lower bound or least upper bound.
CQComparator - Interface in ptolemy.actor.util
This interface extends the java.util.Comparator interface, which defines the compare() method.
create(Figure) - Method in class org.kepler.gui.KeplerContextMenuFactory
Create an instance of the menu associated with this factory.
create() - Static method in class org.kepler.job.JobFactory
Create a new job object.
create(GraphController) - Method in class org.kepler.objectmanager.data.DataSourceControllerFactory
Return a new node controller.
create(GraphController) - Method in class ptolemy.chic.ChicControllerFactory
Return a new node controller.
create(Token[], int, int) - Static method in class ptolemy.data.MatrixToken
Deprecated.
Use arrayToMatrix() instead.
create() - Method in class ptolemy.plot.EPSGraphics
 
create(GraphController) - Method in class ptolemy.vergil.basic.DependencyHighlighter
Return a new node controller.
create(GraphController) - Method in class ptolemy.vergil.basic.NodeControllerFactory
Return a new node controller.
create(JContextMenu, NamedObj) - Method in class ptolemy.vergil.debugger.BreakpointDialogFactory
Add an item to the given context menu that will open a dialog to configure breakpoints for an object.
create(GraphController) - Method in class ptolemy.vergil.icon.ResizableAttributeControllerFactory
Return a new node controller.
create(JContextMenu, NamedObj) - Method in class ptolemy.vergil.kernel.PortDialogFactory
Deprecated.
Add an item to the given context menu that will open a dialog to add or remove ports from an object.
create(JContextMenu, NamedObj) - Method in class ptolemy.vergil.kernel.RenameDialogFactory
Deprecated.
Add an item to the given context menu that will open a dialog to add or remove ports from an object.
create(GraphController) - Method in class ptolemy.vergil.modal.modal.HierarchicalStateControllerFactory
Return a new node controller.
create(JContextMenu, NamedObj) - Method in class ptolemy.vergil.toolbox.MenuActionFactory
Add an item to the given context menu that will configure the parameters on the given target.
create(JContextMenu, NamedObj) - Method in interface ptolemy.vergil.toolbox.MenuItemFactory
Add an item to the given context menu that will operate on specified target, and return the menu item.
create(GraphController) - Method in class ptolemy.vergil.toolbox.MoMLModelAttributeControllerFactory
Create a new ModelAttributeController with the specified graph controller.
create(Figure) - Method in class ptolemy.vergil.toolbox.PtolemyMenuFactory
Create an instance of the menu associated with this factory.
create(JContextMenu, NamedObj) - Method in class ptolemy.vergil.toolbox.RadioMenuActionFactory
Add an item to the given context menu that will configure the parameters on the given target.
createActionChangeListener(JMenuItem) - Method in class org.ecoinformatics.seek.querybuilder.QBApp
 
createAddTagButton(KeplerGraphFrame.Components) - Method in class org.kepler.tagging.gui.TagBarInsertionUI
 
createAndAddTreeItem(CompositeEntity, LibItem) - Method in class org.kepler.objectmanager.library.LibraryManager
Create and add the appropriate type of placeholder object to the parent CompositeEntity that is in the tree model.
createAndShowGUI() - Static method in class org.kepler.authentication.gui.DomainSelectionGUI
Create the GUI and show it.
createAndShowGUI() - Method in class org.kepler.authentication.gui.LDAPLoginGUI
Create the GUI and show it.
createAsc(String) - Method in class org.ecoinformatics.seek.gis.java_gis.Grid
 
createBackgroundFigure() - Method in class org.kepler.gui.KeplerXMLIcon
Create a background Figure based on this icon.
createBackgroundFigure() - Method in class org.kepler.monitor.MonitorIcon
Create a new default background figure.
createBackgroundFigure() - Method in class ptolemy.vergil.icon.ActorNameIcon
Create a new background figure.
createBackgroundFigure() - Method in class ptolemy.vergil.icon.BoxedValueIcon
Create a new background figure.
createBackgroundFigure() - Method in class ptolemy.vergil.icon.BoxedValuesIcon
Create a new background figure.
createBackgroundFigure() - Method in class ptolemy.vergil.icon.ConstraintMonitorIcon
Override the base class to modify the background color, if appropriate.
createBackgroundFigure() - Method in class ptolemy.vergil.icon.CopyCatIcon
Create a new background figure.
createBackgroundFigure() - Method in class ptolemy.vergil.icon.EditorIcon
Create a new background figure.
createBackgroundFigure() - Method in class ptolemy.vergil.icon.ImageIcon
Create a new default background figure, which is scaled image, if it has been set, or a default image if not.
createBackgroundFigure() - Method in class ptolemy.vergil.icon.NameIcon
Create a new background figure.
createBackgroundFigure() - Method in class ptolemy.vergil.icon.ShapeIcon
Create a new default background figure, which is the shape set by setShape, if it has been called, or a small box if not.
createBackgroundFigure() - Method in class ptolemy.vergil.icon.TableIcon
Create a new background figure.
createBackgroundFigure() - Method in class ptolemy.vergil.icon.TextIcon
Create a new default background figure, which is the text set by setText, if it has been called, or default text if not.
createBackgroundFigure() - Method in class ptolemy.vergil.icon.UpdatedValueIcon
Create a new background figure.
createBackgroundFigure() - Method in class ptolemy.vergil.icon.ValueIcon
Create a background figure based on this icon, which is a text element with the name of the container, a colon, and its value.
createBackgroundFigure() - Method in class ptolemy.vergil.icon.XMLIcon
Create a background figure based on this icon.
createBackgroundFigure() - Method in class ptolemy.vergil.pdfrenderer.PDFIcon
Create a new default background figure, which is an instance of PDFFigure.
createBindings() - Method in class org.kepler.scriptengine.java.JavaScriptEngine
 
CreateBoundingBox - Class in org.kepler.gis.actor.bbox
Create a bounding box.
CreateBoundingBox(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.bbox.CreateBoundingBox
Create a new CreateBoundingBox in a container with the specified name.
createBranchController(Iterator) - Method in class ptolemy.actor.process.CompositeProcessDirector
Create a input and/or output branch controllers according to whether the ports passed in as arguments are input or output ports.
createClass(NamedOntModel, String) - Method in class org.kepler.sms.OntologyCatalog
Add a class with the given name to the ontology
createClass(NamedOntModel, String, NamedOntClass) - Method in class org.kepler.sms.OntologyCatalog
 
createColumn(Column, boolean) - Method in class org.kepler.util.sql.DatabaseType
Adds a column to an existing table in the database.
createColumn(Column, Statement) - Method in class org.kepler.util.sql.DatabaseType
Adds a column to an existing table in the database.
createColumn(Column, Statement, boolean) - Method in class org.kepler.util.sql.DatabaseType
Adds a column to an existing table in the database.
createColumnLayout(int, int, ColumnSpec) - Static method in class com.jgoodies.forms.factories.FormFactory
Creates and returns an instance of FormLayout to build forms with the specified number of major and minor columns.
createColumnLayout(int, int, ColumnSpec, ConstantSize, ConstantSize) - Static method in class com.jgoodies.forms.factories.FormFactory
Creates and returns an instance of FormLayout to build forms with the given number of major columns.
createColumnLayout(int, int, ColumnSpec, ColumnSpec, ConstantSize, ConstantSize, ConstantSize) - Static method in class com.jgoodies.forms.factories.FormFactory
Creates and returns an instance of FormLayout to build forms with the given number of major columns.
createComponentDefs() - Static method in class org.mlc.swing.layout.ComponentDef
Creates a new instance of Component Palette.
createCondInspector() - Method in class org.ecoinformatics.seek.querybuilder.DBWherePanel
Creates the inspector panel for a condition
createConnections(IOPort) - Method in class org.kepler.provenance.PortConnector
Create connections for a port.
createConstraint(String[], String, String, String, String) - Method in class org.geon.LidarUtilities
 
createContextMenuFactory(GraphController) - Method in class org.kepler.gui.KeplerContextMenuFactory.Factory
 
createContextMenuFactory(GraphController) - Method in class org.kepler.gui.KeplerSchematicContextMenuFactory.Factory
 
createContextMenuFactory(GraphController) - Method in class ptolemy.vergil.basic.ContextMenuFactoryCreator
Create the KeplerContextMenuFactory class and return it.
createControlPanel() - Method in class org.ecoinformatics.seek.querybuilder.DBWherePanel
Creates the control panel of button for adding and removing items in the "where clause"
created - Variable in class ptolemy.vergil.kernel.attributes.IDAttribute
The date that this model was created.
CreateDate - Class in org.kepler.date
Create a date token.
CreateDate(CompositeEntity, String) - Constructor for class org.kepler.date.CreateDate
Construct a CreateDate with the given container and name.
createDB - Variable in class org.eol.WmsdActor
 
createDecoratorAttributes(NamedObj) - Method in class ptolemy.data.expr.ConstraintMonitor
Return the decorated attributes for the target NamedObj, or null if the target is not decorated by this decorator.
createDecoratorAttributes(NamedObj) - Method in interface ptolemy.kernel.util.Decorator
Create and return the decorated attributes for the target NamedObj.
createDefaultHeaderEditor() - Method in class org.kepler.workflowrunmanager.gui.ColumnGroup
 
createDefaultOntology() - Method in class org.kepler.sms.OntologyCatalog
 
createDialog(Frame, Configuration, Effigy, Class, Entity) - Static method in class ptolemy.actor.gui.DialogTableau
Create a tableau for the specified dialog.
createDir(String, boolean) - Method in interface org.kepler.ssh.ExecInterface
Create directory.
createDir(String, boolean) - Method in class org.kepler.ssh.LocalExec
Create a directory given as String parameter.
createDir(String, boolean) - Method in class org.kepler.ssh.RemoteExec
Create directory on the remote site with "mkdir" or "mkdir -p" command.
createEditor(NamedObj, Frame) - Method in class org.kepler.ddp.gui.ExecutionChoiceEditorFactory
 
createEditor(NamedObj, Frame) - Method in class ptolemy.actor.gui.CommunicationAspectMonitor.CommunicationAspectMonitorEditorFactory
Create an editor for configuring the specified object with the specified parent window.
createEditor() - Method in interface ptolemy.actor.gui.Editable
Create an editor.
createEditor(NamedObj) - Method in interface ptolemy.actor.gui.Editable
Create an editor for configuring the specified object.
createEditor(NamedObj, Frame) - Method in interface ptolemy.actor.gui.Editable
Create an editor for configuring the specified object with the specified parent window.
createEditor() - Method in class ptolemy.actor.gui.EditorFactory
Create an editor for configuring the container.
createEditor(NamedObj) - Method in class ptolemy.actor.gui.EditorFactory
Create an editor for configuring the specified object.
createEditor(NamedObj, Frame) - Method in class ptolemy.actor.gui.EditorFactory
Create an editor for configuring the specified object with the specified parent window.
createEditor(NamedObj, Frame) - Method in class ptolemy.actor.gui.ExecutionAspectPlotterEditorFactory
Create an editor for configuring the specified object with the specified parent window.
createEditor(NamedObj, Frame) - Method in class ptolemy.actor.gui.FileOrURLEditorFactory
Create an editor for configuring the specified object.
createEditor() - Method in class ptolemy.actor.gui.LiveLink
Create an editor.
createEditor(NamedObj) - Method in class ptolemy.actor.gui.LiveLink
Create an editor for configuring the specified object.
createEditor(NamedObj, Frame) - Method in class ptolemy.actor.gui.LiveLink
Create a doc viewer for the specified object with the specified parent window.
createEditor(NamedObj, Frame) - Method in class ptolemy.actor.lib.gui.ExceptionManagerGUIFactory
Create an editor for configuring the specified object with the specified parent window.
createEditor(NamedObj, Frame) - Method in class ptolemy.vergil.basic.DocViewerFactory
Create a doc viewer for the specified object with the specified parent window.
createEditor(NamedObj, Frame) - Method in class ptolemy.vergil.toolbox.AnnotationEditorFactory
Deprecated.
Create an editor for configuring the specified object.
createEditor(NamedObj, Frame) - Method in class ptolemy.vergil.toolbox.ArrayOfRecordsConfigureFactory
Create a top-level viewer for the specified object with the specified parent window.
createEditor(NamedObj, Frame) - Method in class ptolemy.vergil.toolbox.TextEditorConfigureFactory
Create an editor for editing the string attribute specified by the attributeName parameter.
createEditor(NamedObj, Frame) - Method in class ptolemy.vergil.toolbox.VisibleParameterEditorFactory
Create an editor for configuring the specified object.
createEditorPane() - Method in class org.kepler.ddp.gui.ExecutionChoiceEditorPane.Factory
 
createEditorPane() - Method in class ptolemy.actor.gui.EditorPaneFactory
Return a new widget for configuring the container.
createEditorPane(NamedObj) - Static method in class ptolemy.actor.gui.EditorPaneFactory
Return a new default widget for configuring the specified object.
createEditorPane(NamedObj, PtolemyQuery) - Static method in class ptolemy.actor.gui.EditorPaneFactory
Return a new default widget for configuring the specified object.
createEditorPane() - Method in class ptolemy.actor.gui.FileOrURLEditorFactory
Return a new widget for configuring the container.
createEditorPane() - Method in class ptolemy.actor.gui.InsideEntityEditorPaneFactory
Override the base class to look for an entity contained by the container and return a configurer for that.
createEditorPane() - Method in class ptolemy.actor.gui.TransitionEditorPaneFactory
Override the base class to look for an entity contained by the container and return a configurer for that.
createEditorPane() - Method in class ptolemy.vergil.toolbox.AnnotationEditorFactory
Deprecated.
Return a new widget for configuring the container.
createEditorPane() - Method in class ptolemy.vergil.toolbox.VisibleParameterEditorFactory
Return a new widget for configuring the container.
createEffigy(CompositeActor) - Static method in class org.kepler.ddp.director.DDPEngine
Create an Effigy for a model so that windows may be opened by gui actors.
createEffigy(CompositeEntity, URL, URL) - Method in class org.kepler.gui.kar.KAREffigy.Factory
Create a new effigy in the given container by reading the input URL.
createEffigy(CompositeEntity, URL, URL) - Method in class org.kepler.objectmanager.data.db.QBEffigy.Factory
Create a new effigy in the given container by reading the specified URL.
createEffigy(CompositeEntity, URL, URL) - Method in class org.sdm.spa.gui.DoubleShellTAPEffigy.ShellFactory
If the input URL is null, then create a blank effigy; otherwise, return null.
createEffigy(CompositeEntity, URL, URL) - Method in class ptolemy.actor.gui.BrowserEffigy.Factory
Create a new effigy in the given container by reading the specified URL.
createEffigy(CompositeEntity) - Method in class ptolemy.actor.gui.EffigyFactory
Create a new blank effigy in the given container.
createEffigy(CompositeEntity, URL, URL) - Method in class ptolemy.actor.gui.EffigyFactory
Create a new effigy in the given container by reading the specified URL.
createEffigy(CompositeEntity, URL, URL) - Method in class ptolemy.actor.gui.exec.ExecShellEffigy.ShellFactory
If the input URL is null, then create a blank effigy; otherwise, return null.
createEffigy(CompositeEntity, URL, URL) - Method in class ptolemy.actor.gui.ExpressionShellEffigy.ShellFactory
If the input URL is null, then create a blank effigy; otherwise, return null.
createEffigy(CompositeEntity, URL, URL) - Method in class ptolemy.actor.gui.HTMLEffigyFactory
Create a new effigy in the given container by reading the specified URL.
createEffigy(CompositeEntity, URL, URL) - Method in class ptolemy.actor.gui.ImageTokenEffigy.Factory
Create a new effigy in the given container by reading the specified URL.
createEffigy(CompositeEntity, URL, URL) - Method in class ptolemy.actor.gui.PlotEffigy.Factory
Create a new effigy in the given container by reading the specified URL.
createEffigy(CompositeEntity, URL, URL) - Method in class ptolemy.actor.gui.ptjacl.TclShellEffigy.ShellFactory
If the input URL is null, then create a blank effigy; otherwise, return null.
createEffigy(CompositeEntity, URL, URL) - Method in class ptolemy.actor.gui.PtolemyEffigy.Factory
Create a new effigy in the given container by reading the input URL.
createEffigy(CompositeEntity, URL, URL) - Method in class ptolemy.actor.gui.python.PythonShellEffigy.ShellFactory
If the input URL is null, then create a blank effigy; otherwise, return null.
createEffigy(CompositeEntity, URL, URL) - Method in class ptolemy.actor.gui.TextEffigy.Factory
Create a new effigy in the given container by reading the specified URL.
createEffigy(CompositeEntity, URL, URL) - Method in class ptolemy.actor.gui.TokenEffigy.Factory
Create a new effigy in the given container by reading the specified URL.
createEffigy(CompositeEntity, URL, URL) - Method in class ptolemy.vergil.actor.DocBuilderEffigy.Factory
Create a new effigy in the given container.
createEffigy(CompositeEntity, URL, URL) - Method in class ptolemy.vergil.actor.DocEffigy.Factory
Create a new effigy in the given container by reading the specified URL.
createEmptyBorder(ConstantSize, ConstantSize, ConstantSize, ConstantSize) - Static method in class com.jgoodies.forms.factories.Borders
Creates and returns an EmptyBorder with the specified gaps.
createEmptyBorder(String) - Static method in class com.jgoodies.forms.factories.Borders
Creates and returns a Border using sizes as specified by the given string.
createEmptyFields(NamedObj) - Method in class ptolemy.vergil.basic.KeplerDocumentationAttribute
Create empty fields for the main attribute as well as any params or ports that exist in the target.
createEmptySchema(CoordinateReferenceSystem) - Static method in class org.kepler.gis.util.VectorUtilities
Create an empty feature schema
CreateExpressionFromQuery - Class in org.sdm.spa
 
CreateExpressionFromQuery(CompositeEntity, String) - Constructor for class org.sdm.spa.CreateExpressionFromQuery
Construct a CreateExpressionFromQuery actor with the given container and name.
createExternalChanges(NamedObj, List<NamedOntClass>, List<NamedOntClass>) - Static method in class org.kepler.tagging.TagReloadType
 
createFigure() - Method in class org.kepler.monitor.MonitorIcon
 
createFigure() - Method in class ptolemy.vergil.icon.AttributeValueIcon
Create a new Diva figure that visually represents this icon.
createFigure() - Method in class ptolemy.vergil.icon.BoxedValuesIcon
Create a new Diva figure that visually represents this icon.
createFigure() - Method in class ptolemy.vergil.icon.EditorIcon
Create a new Diva figure that visually represents this icon.
createFigure() - Method in class ptolemy.vergil.icon.NameIcon
Create a new Diva figure that visually represents this icon.
createFigure() - Method in class ptolemy.vergil.icon.ValueIcon
Create a new Diva figure that visually represents this icon.
createFilename() - Method in class org.kepler.objectmanager.lsid.KeplerLSID
this will create a valid filename out of the lsid (without an extension).
createFrame(TableauFrame) - Method in class ptolemy.actor.gui.MatrixTokenTableau
Create a matrix frame to view the data.
createFrame(TableauFrame) - Method in class ptolemy.actor.gui.TokenTableau
Create a text editor frame to view the data.
createFrame(TableauFrame) - Method in class ptolemy.actor.lib.image.ImageTableau
Create an image display to view the picture.
createGapColumnSpec(ConstantSize) - Static method in class com.jgoodies.forms.factories.FormFactory
Creates and returns a ColumnSpec that represents a gap with the specified ConstantSize.
createGapRowSpec(ConstantSize) - Static method in class com.jgoodies.forms.factories.FormFactory
Creates and returns a RowSpec that represents a gap with the specified ConstantSize.
createGraphFrame(CompositeEntity, LibraryAttribute) - Method in class org.kepler.ddp.gui.ExecutionChoiceGraphTableau
Add default choice sub-workflows to the ExecutionChoice before opening it.
createGraphFrame(CompositeEntity, LibraryAttribute) - Method in class org.kepler.gui.frame.KeplerGraphTableau
Create the graph frame that displays the model associated with this tableau together with the specified library.
createGraphFrame(CompositeEntity, LibraryAttribute) - Method in class org.kepler.gui.frame.MultiCompositeTableau
 
createGraphFrame(CompositeEntity) - Method in class org.kepler.gui.frame.TabbedKeplerGraphTableau
Create the graph frame that displays the model associated with this tableau.
createGraphFrame(CompositeEntity, LibraryAttribute) - Method in class org.kepler.gui.frame.TabbedKeplerGraphTableau
Create the graph frame that displays the model associated with this tableau together with the specified library.
createGraphFrame(CompositeEntity) - Method in class ptolemy.vergil.modal.CaseGraphTableau
Create the graph frame that displays the model associated with this tableau.
createGraphFrame(CompositeEntity, LibraryAttribute) - Method in class ptolemy.vergil.modal.CaseGraphTableau
Create the graph frame that displays the model associated with this tableau together with the specified library.
createGraphFrame(CompositeEntity) - Method in class ptolemy.vergil.modal.FSMGraphTableau
Create the graph frame that displays the model associated with this tableau.
createGraphFrame(CompositeEntity, LibraryAttribute) - Method in class ptolemy.vergil.modal.FSMGraphTableau
Create the graph frame that displays the model associated with this tableau together with the specified library.
createGraphFrame(CompositeEntity, LibraryAttribute) - Method in class ptolemy.vergil.modal.ia.InterfaceAutomatonGraphTableau
Override the super class to create an instance of InterfaceAutomatonGraphFrame.
createHierarchy() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Create a typed composite actor that contains the selected actors and connections.
createHorizontalPanel(boolean) - Static method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
Creates a horizontal panel
createIcon() - Method in class org.kepler.gui.KeplerXMLIcon
Create a new Swing icon to use as a thumbnail in the Actor Library.
createIcon() - Method in class ptolemy.vergil.icon.DesignPatternIcon
Create an icon.
createIcon() - Method in class ptolemy.vergil.icon.EditorIcon
Create a new Swing icon.
createIcon() - Method in class ptolemy.vergil.icon.ImageIcon
Create a new Swing icon.
createIcon() - Method in class ptolemy.vergil.icon.NameIcon
Create an icon.
createIcon() - Method in class ptolemy.vergil.icon.TextIcon
Create a new Swing icon.
createIcon() - Method in class ptolemy.vergil.icon.XMLIcon
Create a new Swing icon.
createIndex(File, FileWriter) - Method in class org.kepler.util.DocUtil
this method will index all of the documentation files it finds in the provided directory. the index will be placed in the dir with the other files
createIndex(String, String, String) - Method in class org.kepler.util.sql.DatabaseType
Create an index on a table and column(s).
createIndex(String, String, String, Table.IndexType) - Method in class org.kepler.util.sql.DatabaseType
Create a specific type of index on a table and column(s).
createInjector(PtolemyModule...) - Static method in class ptolemy.actor.injection.PtolemyInjector
Create an injector for the given set of modules.
createInjector(Iterable<? extends PtolemyModule>) - Static method in class ptolemy.actor.injection.PtolemyInjector
Create an injector for the given set of modules.
createInputSplits(int) - Method in class org.kepler.stratosphere.io.input.DataFileInputFormat
 
createInputSplits(int) - Method in class org.kepler.stratosphere.io.input.TokenInputFormat
Create the input splits that can be processed in parallel.
createInstance(Class<?>, Object[]) - Static method in class org.kepler.objectmanager.ActorMetadata
createInstance. creates an instance of a class object. taken from ptolemy's MomlParser class. modified for this application.
createInstanceFromExisting(KeplerDocumentationAttribute) - Method in class ptolemy.vergil.basic.KeplerDocumentationAttribute
Populate the members of KeplerDocumentationAttribute from another given KeplerDocumentationAttribute.
createInteractiveTagAddedChange(NamedOntClass, NamedObj) - Static method in class org.kepler.tagging.TagReloadType
 
createIntermediateReceiver(Receiver) - Method in interface ptolemy.actor.CommunicationAspect
Create a receiver to mediate a communication via the specified receiver.
CreateIntroFileTask - Class in org.kepler.loader
Created by David Welker.
CreateIntroFileTask() - Constructor for class org.kepler.loader.CreateIntroFileTask
 
createKAREntryHandler() - Method in class org.kepler.kar.handlers.ActorMetadataKAREntryHandler.Factory
Create a library pane that displays the given library of actors.
createKAREntryHandler() - Method in class org.kepler.kar.handlers.JARKAREntryHandler.Factory
Create a library pane that displays the given library of actors.
createKAREntryHandler() - Method in class org.kepler.kar.handlers.ModuleTxtKAREntryHandler.Factory
Create a library pane that displays the given library of actors.
createKAREntryHandler() - Method in class org.kepler.kar.handlers.ProvKAREntryHandler.Factory
 
createKAREntryHandler() - Method in class org.kepler.kar.handlers.ReportInstanceKAREntryHandler.Factory
Create a KAREntryHandler
createKAREntryHandler() - Method in class org.kepler.kar.handlers.ReportLayoutKAREntryHandler.Factory
Create a library pane that displays the given library of actors.
createKAREntryHandler() - Method in class org.kepler.kar.handlers.WorkflowRunEntryHandler.Factory
.
createKAREntryHandler() - Method in class org.kepler.kar.KAREntryHandlerFactory
Always returns null, this method should be overridden by the factory instance that extends this factory.
createKey(String, String) - Static method in class org.kepler.job.JobManagerFactory
 
createKeyValueArrayType(Type, Type) - Static method in class org.kepler.ddp.actor.pattern.Types
Create the Ptolemy type for array of key values for specific key and value types.
createLabel(String) - Method in interface com.jgoodies.forms.factories.ComponentFactory
Creates and returns a label with an optional mnemonic.
createLabel(String) - Method in class com.jgoodies.forms.factories.DefaultComponentFactory
Creates and returns a label with an optional mnemonic.
CreateLabeledPoint - Class in org.kepler.spark.mllib
Create an RDD of LabeledPoints from a text file with space-delimited values.
CreateLabeledPoint(CompositeEntity, String) - Constructor for class org.kepler.spark.mllib.CreateLabeledPoint
 
CreateLandscape - Class in org.kepler.gis.actor.landscape
Create a Landscape file from component raster layers.
CreateLandscape(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.landscape.CreateLandscape
 
createLayout(String, Container) - Method in class org.mlc.swing.layout.LayoutConstraintsManager
This method creates a layout by first trying to look in memory to see if a layout has been defined with the given name.
createLeftAdjustedConstraints(int) - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Creates and returns a CellConstraints object at the current cursor position that uses the given column span and is adjusted to the left.
createLeftToRightBuilder() - Static method in class com.jgoodies.forms.builder.ButtonBarBuilder
Creates and returns a ButtonBarBuilder with initialized with a left to right button order.
createLibrarySearchResultPane(PTree, LibrarySearchResults) - Method in class org.kepler.gui.LibrarySearchResultPaneFactory
This method returns a LibrarySearchResultPane which is used in the pluggable interface for the search result pane
createLibrarySearchResultPane(PTree, LibrarySearchResults) - Method in class org.kepler.gui.ResultHighlighter.Factory
creates a ResultsHighlighter and returns it.
createLibrarySearchResultPane(PTree, LibrarySearchResults) - Method in class org.kepler.gui.ResultTreeRebuilder.Factory
creates a ResultTreeBuilder and returns it.
createLink(Path, Path, Path) - Static method in class ptolemy.util.FileUtilities
Create a link.
createLocallyUniqueLSID(String) - Method in class org.ecoinformatics.seek.sms.KeplerLocalLSIDService
This is a simple algorithm that computes a new id for a given namespace in the default domain.
createLowerPanel() - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneAdvanced
Creates the lower panel that contains the tabs "Select" and "Where"
createLowerPanel(DSSchemaIFace) - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneIntermediate
Creates the lower panel that contains the tabs "Select" and "Where"
createLowerPanel(DSSchemaIFace) - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
Create the lower panel
createLSID(String, String) - Method in class org.ecoinformatics.seek.sms.KeplerLocalLSIDService
 
createManagerForModel(CompositeActor, ExecutionListener, StubBaseActor, StubBaseActor, boolean, boolean) - Static method in class org.kepler.ddp.Utilities
Create a Manager for a model and optionally start execution.
createMemento() - Method in class org.kepler.sms.SemanticTypeManager
Create a saved state (memento) of this manager.
createMenuItem(JMenu, String, String, String, Action, boolean) - Method in class org.ecoinformatics.seek.querybuilder.QBApp
Creates a generic menu item
createMenus() - Method in class org.ecoinformatics.seek.querybuilder.QBApp
Create menus
createMouseInputListener() - Method in class org.kepler.workflowrunmanager.gui.GroupableTableHeaderUI
 
createNamedOntClassFromURI(String) - Static method in class org.kepler.sms.NamedOntClass
 
createNamedOntClassFromURIs(String, String) - Static method in class org.kepler.sms.NamedOntClass
 
createNewEntry(HttpServletRequest) - Method in class org.geon.LidarJobDB
 
createNewJobStatusEntry(String) - Method in class org.geon.LidarJobDB
Create an initial job status entry
createNewOrDeleteChange(NamedOntClass, boolean) - Static method in class org.kepler.tagging.TagReloadType
 
createOperInspector() - Method in class org.ecoinformatics.seek.querybuilder.DBWherePanel
Creates the inspector panel for the Operator
createPorts(Parameters) - Method in class org.sdm.spa.MessageBasedWebService
Deprecated.
Creates ports for the web service operation
createPreferencesTab() - Method in class org.ecoinformatics.seek.ecogrid.EcogridPreferencesTab.Factory
Create a PreferencesTab that displays the selected Ecogrid Services.
createPreferencesTab() - Method in class org.ecoinformatics.seek.ecogrid.ServicesListModificationPanel.Factory
Create a PreferencesTab that displays the selected Ecogrid Services.
createPreferencesTab() - Method in class org.kepler.gui.ComponentLibraryPreferencesTab.Factory
Create a PreferencesTab that displays the selected Ecogrid Services.
createPreferencesTab() - Method in class org.kepler.gui.kar.KARPreferencesTab.Factory
 
createPreferencesTab() - Method in class org.kepler.gui.PreferencesTabFactory
Always returns null, this method should be overridden by the factory instance that extends this factory.
createPreferencesTab() - Method in class org.kepler.workflowscheduler.gui.configurationwizard.WorkflowRunEnginePreferenceTab.Factory
 
createPreferencesTab() - Method in class org.kepler.workflowscheduler.gui.configurationwizard.WorkflowSchedulerPreferenceTab.Factory
 
createPreferencesTabs(JTabbedPane, TableauFrame) - Method in class org.kepler.gui.PreferencesTabFactory
 
createPrimaryTableau(Effigy) - Method in class ptolemy.actor.gui.Configuration
Create the first tableau for the given effigy, using the tableau factory.
createPropertiesPanel() - Method in class org.kepler.reporting.gui.PropertiesPanel
 
createQueryBox(PtolemyQuery, Settable) - Method in interface ptolemy.actor.gui.CustomQueryBoxParameter
Create a customized query box for the given query.
createRadioButtons() - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneIntermediate
Creates the radio buttons
createRadioButtons() - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
Creates the radio buttons
createReceivers() - Method in interface ptolemy.actor.Actor
Create receivers for all necessary ports.
createReceivers() - Method in class ptolemy.actor.AtomicActor
Create receivers for each input port.
createReceivers() - Method in class ptolemy.actor.CompositeActor
Create receivers for each port.
createReceivers() - Method in class ptolemy.actor.IOPort
Create new receivers for this port, replacing any that may previously exist, and validate any instances of Settable that this port may contain.
createReceivers() - Method in class ptolemy.domains.modal.kernel.FSMActor
Create receivers for each input port.
createRecordReader(InputSplit, TaskAttemptContext) - Method in class org.kepler.bio.hadoop.input.FASTAInputFormat
 
createRecordReader(InputSplit, TaskAttemptContext) - Method in class org.kepler.hadoop.io.input.DelimitedTextInputFormat
 
createRecordReader(InputSplit, TaskAttemptContext) - Method in class org.kepler.hadoop.io.input.DuplicatedTextInputFormat
 
createRecordReader(InputSplit, TaskAttemptContext) - Method in class org.kepler.hadoop.io.input.FileContentInputFormat
 
createRecordReader(InputSplit, TaskAttemptContext) - Method in class org.kepler.hadoop.io.input.FilePathInputFormat
 
createRecordReader(InputSplit, TaskAttemptContext) - Method in class org.kepler.hadoop.io.input.MultiLineInputFormat
 
createRecordReader(InputSplit, TaskAttemptContext) - Method in class org.kepler.hadoop.io.input.TokenInputFormat
Create the RecordReader for a split.
createRectangularMask(double, double, double, double, double, double) - Method in class org.ecoinformatics.seek.gis.java_gis.Grid
 
CreateRequestFromResult - Class in org.sdm.spa
 
CreateRequestFromResult(CompositeEntity, String) - Constructor for class org.sdm.spa.CreateRequestFromResult
Construct a CreateExpressionFromQuery actor with the given container and name.
CreateRO - Class in org.kepler.webview.server.app.ro
Create a research object on ROHUB.
CreateRO() - Constructor for class org.kepler.webview.server.app.ro.CreateRO
 
createScaledShape(double) - Method in class org.ecoinformatics.seek.gis.java_gis.ConvexHull
 
createSchedule() - Method in class ptolemy.actor.CompositeActor
Create the schedule for this model, if necessary.
createSchedule() - Method in class ptolemy.actor.Director
Create the schedule for this director, if necessary.
createSchedule() - Method in class ptolemy.domains.sdf.kernel.SDFDirector
Create the SDF schedule for this director.
createSchemaTables(DSSchemaIFace) - Method in class org.ecoinformatics.seek.querybuilder.DBTableDesktopPane
Creates a table frame for each table in the schema
createSchemaV6() - Static method in class org.kepler.provenance.sql.Schemas
Get the v6 provenance schema.
createSchemaV7() - Static method in class org.kepler.provenance.sql.Schemas
Get the v7 provenance schema.
createSchemaV8() - Static method in class org.kepler.provenance.sql.Schemas
Get the newest v8 provenance schema.
createSchemaV8(int) - Static method in class org.kepler.provenance.sql.Schemas
Get the V8 provenance schema at a specific minor version.
createScrollBarModifier() - Method in class org.kepler.gui.CanvasNavigationModifierFactory
creates the ScrollBarModifier class and returns it
createScrollBarModifier() - Method in class org.kepler.gui.ScrollBarModifier.Factory
creates a ScrollBarModifier and returns it.
createSearchStringChange(String, String) - Static method in class org.kepler.tagging.TagReloadType
 
createSelectForDisplayPanel(DSSchemaIFace) - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneAdvanced
Creates the "Select" panel for discribing what fields will have their values displayed
createSeparator(String, int) - Method in interface com.jgoodies.forms.factories.ComponentFactory
Creates and returns a labeled separator.
createSeparator(String) - Method in class com.jgoodies.forms.factories.DefaultComponentFactory
Creates and returns a labeled separator with the label in the left-hand side.
createSeparator(String, int) - Method in class com.jgoodies.forms.factories.DefaultComponentFactory
Creates and returns a labeled separator.
createSeparator(JLabel) - Method in class com.jgoodies.forms.factories.DefaultComponentFactory
Creates and returns a labeled separator.
createSequence(Token, Token, int) - Static method in class ptolemy.data.MatrixToken
Create an array of tokens of the given length.
createSequenceReturnType(Type, Type, Type) - Static method in class ptolemy.data.MatrixToken
Return the (exact) return type of the createSequence function above.
createShape() - Method in class org.ecoinformatics.seek.gis.java_gis.ConvexHull
 
createShapeMask(Shape, double, double) - Method in class org.ecoinformatics.seek.gis.java_gis.Grid
 
createSliderPanel(int, int, int, int, String) - Static method in class ptolemy.actor.lib.gui.SliderSource.SliderFrame
Create a slider panel.
createSQL(DSSchemaIFace, DBQueryDef) - Static method in class org.ecoinformatics.seek.querybuilder.DBQueryDefParserEmitter
Create SQL string
createSQL() - Method in interface org.ecoinformatics.seek.querybuilder.QBBuilderInterface
 
createSQL() - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneAdvanced
Create SQL string
createSQL() - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneIntermediate
Create SQL string
createSQL() - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
Create SQL string
createStaticReportItemView(Item, DragAndDropPanel) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
createStaticReportItemView - Creates the Views for the Static Report Items.
createSubmitFile(String, Job) - Method in class org.kepler.job.JobSupportCondor
Create a submission file for the specific job manager, based on the information available in Job: - executable name - input files - output files - arguments for the job
createSubmitFile(String, Job) - Method in class org.kepler.job.JobSupportFork
Create a submission file for the specific job manager, based on the information available in Job: - executable name - input files - output files - arguments for the job
createSubmitFile(String, Job) - Method in class org.kepler.job.JobSupportLoadLeveler
Create a submission file for the specific job manager, based on the information available in Job: - executable name - input files - output files - arguments for the job
createSubmitFile(String, Job) - Method in class org.kepler.job.JobSupportLSF
Create a submission file for the specific job manager, based on the information available in Job: - executable name - input files - output files - arguments for the job
createSubmitFile(String, Job) - Method in class org.kepler.job.JobSupportMoab
Create a submission file for the specific job manager, based on the information available in Job: - executable name - input files - output files - arguments for the job
createSubmitFile(String, Job) - Method in class org.kepler.job.JobSupportNCCS
Create a submission file for the specific job manager, based on the information available in Job: - executable name - input files - output files - arguments for the job
createSubmitFile(String, Job) - Method in class org.kepler.job.JobSupportPBS
Create a submission file for the specific job manager, based on the information available in Job: - executable name - input files - output files - arguments for the job
createSubmitFile(String, Job) - Method in class org.kepler.job.JobSupportSGE
Create a submission file for the specific job manager, based on the information available in Job: - executable name - input files - output files - arguments for the job
createSubmitFile(String, Job) - Method in class org.kepler.job.JobSupportSLURM
Create a submission file for the specific job manager, based on the information available in Job: - executable name - input files - output files - arguments for the job
CREATETABLE - Static variable in class org.ecoinformatics.seek.dataquery.DBTablesGenerator
 
createTable(DSTableIFace, int, int, int) - Method in class org.ecoinformatics.seek.querybuilder.DBTableDesktopPane
Creates a single table frame from the table schema
createTable(String) - Method in class org.kepler.util.sql.Schema
Create a new table.
createTableau(Effigy) - Method in class org.kepler.ddp.gui.ExecutionChoiceGraphTableau.Factory
Create an instance of ExecutionChoiceGraphTableau for the specified effigy, if it is an effigy for an instance of ExecutionChoice.
createTableau(Effigy) - Method in class org.kepler.gui.frame.CaseGraphTableau.Factory
Create an instance of CaseGraphTableau for the specified effigy, if it is an effigy for an instance of Case.
createTableau(Effigy) - Method in class org.kepler.gui.frame.KeplerGraphTableau.Factory
Create a tableau in the default workspace with no name for the given Effigy.
createTableau(Effigy) - Method in class org.kepler.gui.frame.TabbedKeplerGraphTableau.Factory
Create a tableau in the default workspace with no name for the given Effigy.
createTableau(Effigy) - Method in class org.kepler.objectmanager.data.db.QBTableauFactory
Create a tableau for the specified effigy.
createTableau(Effigy) - Method in class org.sdm.spa.gui.DoubleShellTAPTableau.Factory
Create a new instance of ExpressionShellTableau in the specified effigy.
createTableau(Effigy) - Method in class ptolemy.actor.gui.BrowserTableau.Factory
If the specified effigy is a BrowserEffigy and it already contains a tableau named "browserTableau", then return that tableau; otherwise, create a new instance of BrowserTableau in the specified effigy, and name it "browserTableau" and return that tableau.
createTableau(Effigy) - Method in class ptolemy.actor.gui.Console.Factory
Create a new instance of Console in the specified effigy.
createTableau(Effigy) - Method in class ptolemy.actor.gui.exec.ExecShellTableau.Factory
Create a new instance of ExecShellTableau in the specified effigy.
createTableau(Effigy) - Method in class ptolemy.actor.gui.ExpressionShellTableau.Factory
Create a new instance of ExpressionShellTableau in the specified effigy.
createTableau(Effigy) - Method in class ptolemy.actor.gui.HTMLViewerTableau.Factory
If the specified effigy already contains a tableau named "htmlTableau", then return that tableau; otherwise, create a new instance of HTMLViewerTableau in the specified effigy, and name it "htmlTableau".
createTableau(Effigy) - Method in class ptolemy.actor.gui.JVMTableau.Factory
Create a new instance of JVMTableau in the specified effigy.
createTableau(Effigy) - Method in class ptolemy.actor.gui.LevelSkippingTableauFactory
Create a tableau for the specified effigy by identifying an object contained by the specified effigy as given by entityName, or the first entity contained by that object if no entityName is given.
createTableau(Effigy) - Method in class ptolemy.actor.gui.MatrixTokenTableau.Factory
If the specified effigy already contains a tableau named "tokenTableau", then return that tableau; otherwise, create a new instance of MatrixTokenTableau in the specified effigy, and name it "tokenTableau".
createTableau(Effigy) - Method in class ptolemy.actor.gui.PlotTableau.Factory
If the specified effigy already contains a tableau named "plotTableau", then return that tableau; otherwise, create a new instance of PlotTableau in the specified effigy, and name it "plotTableau".
createTableau(Effigy) - Method in class ptolemy.actor.gui.ptjacl.TclShellTableau.Factory
Create a new instance of TclShellTableau in the specified effigy.
createTableau(Effigy) - Method in class ptolemy.actor.gui.PtolemyTableauFactory
Create a tableau for the specified effigy.
createTableau(Effigy) - Method in class ptolemy.actor.gui.python.PythonShellTableau.Factory
Create a new instance of PythonShellTableau in the specified effigy.
createTableau(Effigy) - Method in class ptolemy.actor.gui.run.InterfaceTableau.Factory
If the specified effigy already contains a tableau named "runTableau", then return that tableau; otherwise, create a new instance of RunTableau for the effigy, and name it "runTableau".
createTableau(Effigy) - Method in class ptolemy.actor.gui.RunTableau.Factory
If the specified effigy already contains a tableau named "runTableau", then return that tableau; otherwise, create a new instance of RunTableau for the effigy, and name it "runTableau".
createTableau(Effigy) - Method in class ptolemy.actor.gui.RunTableau.TopFactory
Create a tableau to run the model associated with the specified effigy.
createTableau(Effigy) - Method in class ptolemy.actor.gui.TableauFactory
Create a tableau for the specified effigy.
createTableau(Effigy) - Method in class ptolemy.actor.gui.test.SimpleTableau.Factory
If the specified effigy already contains a tableau named "simpleTableau", then return that tableau; otherwise, create a new instance of SimpleTableau for the effigy, and name it "simpleTableau".
createTableau(Effigy) - Method in class ptolemy.actor.gui.test.SimpleTableau.TopFactory
Create a tableau to run the model associated with the specified effigy.
createTableau(Effigy) - Method in class ptolemy.actor.gui.TextEditorTableau.Factory
If the specified effigy is a TextEffigy and it already contains a tableau named "textTableau", then return that tableau; otherwise, create a new instance of TextEditorTableau in the specified effigy, and name it "textTableau" and return that tableau.
createTableau(Effigy) - Method in class ptolemy.actor.gui.TokenTableau.Factory
If the specified effigy already contains a tableau named "tokenTableau", then return that tableau; otherwise, create a new instance of TokenTableau in the specified effigy, and name it "tokenTableau".
createTableau(Effigy) - Method in class ptolemy.actor.lib.image.ImageTableau.Factory
If the specified effigy already contains a tableau named "imageTableau", then return that tableau; otherwise, create a new instance of ImageTableau in the specified effigy, and name it "imageTableau".
createTableau(Effigy) - Method in class ptolemy.vergil.actor.ActorGraphTableau.Factory
Create a tableau in the default workspace with no name for the given Effigy.
createTableau(Effigy) - Method in class ptolemy.vergil.actor.DocBuilderTableau.Factory
If the specified effigy already contains a tableau named "DocBuilderTableau", then return that tableau; otherwise, create a new instance of DocBuilderTableau in the specified effigy, and name it "DocBuilderTableau".
createTableau(Effigy) - Method in class ptolemy.vergil.actor.DocTableau.Factory
If the specified effigy already contains a tableau named "DocTableau", then return that tableau; otherwise, create a new instance of DocTableau in the specified effigy, and name it "DocTableau".
createTableau(Effigy) - Method in class ptolemy.vergil.actor.lib.VisualModelReference.LookInside
Open an instance of the model.
createTableau(Effigy) - Method in class ptolemy.vergil.actor.TypeOpaqueCompositeActorTableauFactory
Create a tableau in the default workspace with no name for the given Effigy.
createTableau(Effigy) - Method in class ptolemy.vergil.icon.EditIconTableau.Factory
Create a tableau in the default workspace with no name for the given Effigy.
createTableau(Effigy) - Method in class ptolemy.vergil.modal.CaseGraphTableau.Factory
Create an instance of CaseGraphTableau for the specified effigy, if it is an effigy for an instance of FSMActor.
createTableau(Effigy) - Method in class ptolemy.vergil.modal.FSMGraphTableau.Factory
Create an instance of FSMGraphTableau for the specified effigy, if it is an effigy for an instance of FSMActor.
createTableau(Effigy) - Method in class ptolemy.vergil.modal.ia.InterfaceAutomatonGraphTableau.Factory
Create a tableau in the default workspace with no name for the given Effigy.
createTableau(Effigy) - Method in class ptolemy.vergil.modal.modal.ModalTableauFactory
Create a tableau for the specified effigy, which is assumed to be an effigy for an instance of ModalModel.
createTableau(Effigy) - Method in class ptolemy.vergil.toolbox.FileEditorTableauFactory
Create a tableau for the specified effigy.
createTableau(Effigy) - Method in class ptolemy.vergil.toolbox.TextEditorTableauFactory
Create a tableau for the specified effigy.
createTableau(Effigy) - Method in class ptolemy.vergil.tree.TreeTableau.Factory
If the effigy is an instance of PtolemyEffigy referencing an instance of CompositeEntity, then create a TreeTableau contained by the effigy.
createTableIfNotExisted - Variable in class org.kepler.actor.database.DatabaseTableCreator
 
createTableIfNotExistParam - Variable in class org.kepler.actor.database.DatabaseTableCreator
Flag indicates to create the table if the table doesn't exist
createTables(Schema) - Method in class org.kepler.util.sql.DatabaseType
Create tables in the database based on a Schema.
createTables(Schema, boolean) - Method in class org.kepler.util.sql.DatabaseType
Create tables in the database based on a Schema.
createTabPane(TableauFrame) - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.DatasetPanel.Factory
Create a library pane that displays the given library of actors.
createTabPane() - Method in class org.kepler.gui.BasicLibraryPane.Factory
Create a library pane that displays the given library of actors.
createTabPane(TableauFrame) - Method in class org.kepler.gui.ComponentLibraryTab.Factory
Create a library pane that displays the given library of actors.
createTabPane(TableauFrame) - Method in class org.kepler.gui.PlotsEditorPanel.Factory
 
createTabPane(TableauFrame) - Method in class org.kepler.gui.PlotsPanel.ViewerFactory
Create a tab pane in a frame.
createTabPane(TableauFrame) - Method in class org.kepler.gui.TabPaneExtensionExample.Factory
Create a library pane that displays the given library of actors.
createTabPane(TableauFrame) - Method in class org.kepler.gui.TabPaneFactory
Always returns null, this method should be overridden by the factory instance that extends this factory.
createTabPane(TableauFrame) - Method in class org.kepler.gui.WorkflowOutlineTabPane.Factory
Create a library pane that displays the given library of actors.
createTabPane(TableauFrame) - Method in class org.kepler.objectmanager.cache.browser.CacheViewerTabPane.Factory
Create a library pane that displays the given library of actors.
createTabPane(TableauFrame) - Method in class org.kepler.profiling.gui.ActorFireOutlineTabPane.Factory
 
createTabPane(TableauFrame) - Method in class org.kepler.profiling.gui.CurrentExecutionPanel.Factory
 
createTabPane(TableauFrame) - Method in class org.kepler.profiling.gui.PortIOOutlineTabPane.Factory
 
createTabPane(TableauFrame) - Method in class org.kepler.profiling.gui.PreviousExecutionPanel.Factory
 
createTabPane(TableauFrame) - Method in class org.kepler.reporting.gui.ItemsOfInterestPanel.Factory
 
createTabPane(TableauFrame) - Method in class org.kepler.reporting.gui.ItemsOfInterestPanel.PlottingFactory
 
createTabPane(TableauFrame) - Method in class org.kepler.reporting.gui.PropertiesPanel.Factory
Create a library pane that displays the given library of actors.
createTabPane(TableauFrame) - Method in class org.kepler.reporting.gui.ReportDesignerPanel.Factory
Create a library pane that displays the given library of actors.
createTabPane(TableauFrame) - Method in class org.kepler.reporting.gui.ReportViewerPanel.Factory
Create a pane that displays the given report viewer.
createTabPane(TableauFrame) - Method in class org.kepler.reporting.gui.ReportViewerTOC.Factory
Create a library pane that displays the given library of actors.
createTabPane(TableauFrame) - Method in class org.kepler.workflowrunmanager.gui.WorkflowRunManagerPanel.Factory
Create a library pane that displays the given library of actors.
createTabPaneTabs(TableauFrame) - Method in class org.kepler.gui.TabPaneFactory
 
createTagAddedChange(NamedOntClass, NamedObj) - Static method in class org.kepler.tagging.TagReloadType
 
createTagCacheChange(NamedOntModel, boolean) - Static method in class org.kepler.tagging.TagReloadType
 
createTagRemovedChange(NamedOntClass, NamedObj) - Static method in class org.kepler.tagging.TagReloadType
 
createTagTargetChange() - Static method in class org.kepler.tagging.TagReloadType
 
createTagTargetChange(NamedObj) - Static method in class org.kepler.tagging.TagReloadType
 
createTagTargetChange(Collection<NamedObj>) - Static method in class org.kepler.tagging.TagReloadType
 
CREATETEXTTABLE - Static variable in class org.ecoinformatics.seek.dataquery.DBTablesGenerator
 
createTitle(String) - Method in interface com.jgoodies.forms.factories.ComponentFactory
Creates and returns a title label that uses the foreground color and font of a TitledBorder.
createTitle(String) - Method in class com.jgoodies.forms.factories.DefaultComponentFactory
Creates and returns a title label that uses the foreground color and font of a TitledBorder.
createTokenFromString(String, Type) - Static method in class org.kepler.ddp.Utilities
Create a Token from a string based on the Ptolemy Type.
createTokenFromString(String, Utilities.TokenType) - Static method in class org.kepler.ddp.Utilities
Create a Token from a string based on the TokenType enum.
createTokenSequence(Token, Token, int) - Static method in class ptolemy.data.MatrixToken
Deprecated.
Use createSequence() instead.
createTreePathArray() - Method in class org.kepler.gui.LibrarySearchResultPane
create an array of treepaths from the results
CreateUniqueFile - Class in org.nees
This actor creates a uniquely-named file in given a directory dir.
CreateUniqueFile(CompositeEntity, String) - Constructor for class org.nees.CreateUniqueFile
Construct a CreateUniqueFile source with the given container and name.
createUniqueKey(int) - Static method in class org.kepler.job.JobFactory
 
createUpperPanel(TableModelListener) - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneAdvanced
Creates the DesktopPane that contains all the tables with "links" or joins.
createUpperPanel(DSSchemaIFace, TableModelListener) - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneIntermediate
Creates the DesktopPane that contains all the tables with "links" or joins.
createUpperPanel(DSSchemaIFace) - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
Create the upper panel
CreateVectorRDD - Class in org.kepler.spark.mllib
Create an RDD of Vectors from a text file or from an RDD of Strings.
CreateVectorRDD(CompositeEntity, String) - Constructor for class org.kepler.spark.mllib.CreateVectorRDD
 
createVersionTable(int, int) - Method in class org.kepler.util.sql.DatabaseType
Create a version table in the database.
createViewPane(TableauFrame) - Method in class org.kepler.gui.ClassicViewPane.Factory
Create a library pane that displays the given library of actors.
createViewPane(TableauFrame) - Method in class org.kepler.gui.DefaultViewPane.Factory
Create a library pane that displays the given library of actors.
createViewPane(TableauFrame) - Method in class org.kepler.gui.DualVerticalViewPane.Factory
Create a library pane that displays the given library of actors.
createViewPane(TableauFrame) - Method in class org.kepler.gui.SingleViewPane.Factory
Create a library pane that displays the given library of actors.
createViewPane(TableauFrame) - Method in class org.kepler.gui.ViewPaneFactory
Always returns null, this method should be overridden by the factory instance that extends this factory.
createViewPanes(TableauFrame) - Method in class org.kepler.gui.ViewPaneFactory
Create and initialize the ViewPane for each known ViewPaneFactory.
createWebAttribute(NamedObj, String, String) - Static method in class ptolemy.vergil.basic.export.web.WebAttribute
Factory method for creating WebAttributes.
createWebElement(NamedObj, String, String) - Static method in class ptolemy.vergil.basic.export.web.WebElement
Factory method for creating WebElements.
createWorkflowRun() - Method in class org.kepler.util.WorkflowRunBuilder
Attempt to create a WorkflowRun from this WorkflowRunBuilder
credential - Variable in class org.kepler.authentication.AuthenticationService
 
CRLF - Static variable in class org.json.HTTP
Carriage return/line feed.
Crop - Class in org.kepler.gis.actor
Crop a GIS data set.
Crop(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.Crop
 
crop(int, int, int, int) - Method in class ptolemy.data.BooleanMatrixToken
Return a new matrix that is a sub-matrix of this matrix.
crop(int, int, int, int) - Method in class ptolemy.data.ComplexMatrixToken
Return a new matrix that is a sub-matrix of this matrix.
crop(int, int, int, int) - Method in class ptolemy.data.DoubleMatrixToken
Return a new matrix that is a sub-matrix of this matrix.
crop(int, int, int, int) - Method in class ptolemy.data.FixMatrixToken
Return a new matrix that is a sub-matrix of this matrix.
crop(int, int, int, int) - Method in class ptolemy.data.IntMatrixToken
Return a new matrix that is a sub-matrix of this matrix.
crop(int, int, int, int) - Method in class ptolemy.data.LongMatrixToken
Return a new matrix that is a sub-matrix of this matrix.
crop(int, int, int, int) - Method in class ptolemy.data.MatrixToken
Return a new matrix that is a sub-matrix of this matrix.
crop(Complex[][], int, int, int, int) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new matrix that is a sub-matrix of the input matrix argument.
crop(double[][], int, int, int, int) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new matrix that is a sub-matrix of the input matrix argument.
crop(float[][], int, int, int, int) - Static method in class ptolemy.math.FloatMatrixMath
Return a new matrix that is a sub-matrix of the input matrix argument.
crop(Fraction[][], int, int, int, int) - Static method in class ptolemy.math.FractionMatrixMath
Return a new matrix that is a sub-matrix of the input matrix argument.
crop(int[][], int, int, int, int) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new matrix that is a sub-matrix of the input matrix argument.
crop(long[][], int, int, int, int) - Static method in class ptolemy.math.LongMatrixMath
Return a new matrix that is a sub-matrix of the input matrix argument.
Cross - Class in org.kepler.ddp.actor.pattern
An actor for the Cross DDP pattern.
Cross(Workspace) - Constructor for class org.kepler.ddp.actor.pattern.Cross
Construct a new Cross in a workspace.
Cross(CompositeEntity, String) - Constructor for class org.kepler.ddp.actor.pattern.Cross
Construct a new Cross in a container with a given name.
cross(Record, Record, Collector<Record>) - Method in class org.kepler.stratosphere.stub.KeplerCrossStub
Transfer the data from Stratosphere to Kepler, execute the workflow, and then transfer the data from Kepler to Stratosphere.
crossCorrelation(double[], double[], int, int, int) - Static method in class ptolemy.math.DoubleArrayStat
Return a new array that is the cross-correlation of the two argument arrays, starting and ending at user-specified lag values.
crossCorrelationAt(double[], double[], int, int) - Static method in class ptolemy.math.DoubleArrayStat
Return the cross-correlation of two arrays at a certain lag value.
CrossInput - Class in org.kepler.ddp.actor.pattern.stub
A stub actor that writes data into workflows for the Cross pattern.
CrossInput(CompositeEntity, String) - Constructor for class org.kepler.ddp.actor.pattern.stub.CrossInput
Construct a new CrossInput in a container with a given name.
CrossOperator - Class in org.kepler.spark.operator
An operator for cross/cartesian/all-pairs.
CrossOperator(PairFlatMapFunction<Iterator<Tuple2<Tuple2<?, ?>, Tuple2<?, ?>>>, ?, ?>, String) - Constructor for class org.kepler.spark.operator.CrossOperator
Create a new CrossOperator.
CrossRefList - Class in ptolemy.kernel.util
CrossRefList is a list that maintains pointers to other CrossRefLists.
CrossRefList(Object) - Constructor for class ptolemy.kernel.util.CrossRefList
Construct a list with the specified container.
CrossRefList(Object, CrossRefList) - Constructor for class ptolemy.kernel.util.CrossRefList
Create a new CrossRefList that is linked to the same CrossRefLists as the original CrossRefList except that this new one has a new container.
CrossRefList.CrossRef - Class in ptolemy.kernel.util
Objects of this type form the elements of the list.
crs - Variable in class org.kepler.gis.actor.bbox.CreateBoundingBox
The coordinate reference system.
crs - Variable in class org.kepler.gis.actor.CRSActor
The coordinate reference system.
CRSActor - Class in org.kepler.gis.actor
Base class for a GIS actor containing a CRS parameter.
CRSActor(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.CRSActor
 
csc() - Method in class ptolemy.math.Complex
Return the cosecant of this complex number.
csc(Complex) - Static method in class ptolemy.math.Complex
Return the cosecant of the given complex number.
CSVReader - Class in ptolemy.actor.lib.io
This actor reads a file or URL, one line at a time, and outputs each line except the first as a record.
CSVReader(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.io.CSVReader
Construct an actor with the given container and name.
CSVWriter - Class in ptolemy.actor.lib.io
This actor reads record-valued input tokens and writes them, one line at a time, to a specified file, as comma-separated list (or separated by some other delimiter given by the separator parameter).
CSVWriter(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.io.CSVWriter
Construct an actor with the given container and name.
curChar - Variable in class ptolemy.data.expr.MatrixParserTokenManager
 
curChar - Variable in class ptolemy.data.expr.PtParserTokenManager
 
curChar - Variable in class ptolemy.moml.unit.UParserTokenManager
 
CURRENT_VERSION - Static variable in class org.kepler.kar.KARFile
 
CURRENT_VERSION - Static variable in class ptolemy.kernel.attributes.VersionAttribute
The VersionAttribute that contains the version of the Ptolemy II release that is currently running.
CurrentDate - Class in ptolemy.actor.lib
Produce an output token on each firing with a value that is the current date.
CurrentDate(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.CurrentDate
Construct an actor with the given container and name.
CurrentExecutionPanel - Class in org.kepler.profiling.gui
A panel that displays actor execution information for the workflow contained by the parent frame that creates the panel.
CurrentExecutionPanel(String) - Constructor for class org.kepler.profiling.gui.CurrentExecutionPanel
Create a new CurrentExecutionPanel with the specified name.
CurrentExecutionPanel.Factory - Class in org.kepler.profiling.gui
A factory to create the tab pane.
CurrentMicrostep - Class in ptolemy.actor.lib
Produce an output token on each firing with a value that is the current microstep, also called the current index, of superdense time.
CurrentMicrostep(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.CurrentMicrostep
Construct an actor with the given container and name.
currentState() - Method in class ptolemy.domains.modal.kernel.FSMActor
Return the current state of this actor.
CurrentSuitePanel - Class in org.kepler.modulemanager.gui
Created by David Welker.
CurrentSuitePanel() - Constructor for class org.kepler.modulemanager.gui.CurrentSuitePanel
 
CurrentTime - Class in ptolemy.actor.lib
Produce an output token on each firing with a value that is the current time.
CurrentTime(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.CurrentTime
Construct an actor with the given container and name.
currentToken - Variable in exception ptolemy.data.expr.ParseException
This is the last token that has been consumed successfully.
currentToken - Variable in exception ptolemy.moml.unit.ParseException
This is the last token that has been consumed successfully.
customContent - Variable in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Parameter specifying text to be inserted into dygraph constructor call.
CustomerPanel - Class in org.mlc.swing.example
A customer panel example.
CustomerPanel() - Constructor for class org.mlc.swing.example.CustomerPanel
Instantiate the CustomerPanel.
CustomizableRunFrame - Class in ptolemy.actor.gui.run
A top-level frame for a customizable run control panel.
CustomizableRunFrame(CompositeActor, InterfaceTableau) - Constructor for class ptolemy.actor.gui.run.CustomizableRunFrame
Construct a frame to control the specified Ptolemy II model.
CustomizableRunFrame.CustomizeMenuListener - Class in ptolemy.actor.gui.run
Listener for customize menu commands.
CustomizableRunPane - Class in ptolemy.actor.gui.run
A panel for interacting with an executing Ptolemy II model.
CustomizableRunPane(CompositeActor, String) - Constructor for class ptolemy.actor.gui.run.CustomizableRunPane
Construct a panel for interacting with the specified Ptolemy II model.
CustomizeDocumentationAction - Class in ptolemy.vergil.basic
An action for editing instance-specific documentation.
CustomizeDocumentationAction() - Constructor for class ptolemy.vergil.basic.CustomizeDocumentationAction
Construct an instance of this action.
CustomizeMenuListener() - Constructor for class ptolemy.actor.gui.run.CustomizableRunFrame.CustomizeMenuListener
 
customizeReadParams(String, String, String[], int[], GridCoverageReader, GeneralParameterValue[]) - Method in class org.kepler.gis.actor.calc.JiffleProcess
This is called by the renderer to optimize the read, if possible, we'll customize the band reading so that we read only what we know will be used by the script.
customProvEvent(ProvenanceEvent) - Method in class org.kepler.provenance.Recording
Record a custom provenance event.
customProvEvent(ProvenanceEvent) - Method in class org.kepler.provenance.sql.SQLRecordingV8
Record a custom provenance event.
customProvEvent(ProvenanceEvent) - Method in class org.kepler.provenance.TextFileRecording
Record a custom provenance event.
CustomQueryBoxParameter - Interface in ptolemy.actor.gui
An interface for Parameter classes that supply their own customized GUI element for modifying the query content.
CUSTOMUNIT - Static variable in class org.kepler.objectmanager.data.db.Attribute
unit type for custom units
cut - Variable in class ptolemy.actor.lib.colt.ColtBreitWigner
cut.
cut() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Remove the currently selected objects from this document, if any, and place them on the clipboard.
CutAction() - Constructor for class ptolemy.vergil.basic.BasicGraphFrame.CutAction
Create a new action to copy and delete the current selection.
CVHull2Raster - Class in org.ecoinformatics.seek.gis.java_gis
This actor creates a spatial raster grid usng the ConvexHull polygon.
CVHull2Raster(CompositeEntity, String) - Constructor for class org.ecoinformatics.seek.gis.java_gis.CVHull2Raster
 
cvHullToFile(String) - Method in class org.ecoinformatics.seek.gis.java_gis.ConvexHull
 
cvScaledHullToFile(double, String) - Method in class org.ecoinformatics.seek.gis.java_gis.ConvexHull
 
cycle() - Method in interface ptolemy.graph.analysis.analyzer.CycleMeanAnalyzer
Return the nodes on the cycle that corresponds to the maximum/minimum cycle mean as an ordered list.
cycle() - Method in interface ptolemy.graph.analysis.analyzer.MaximumProfitToCostRatioAnalyzer
Return the nodes on the cycle that corresponds to the maximum profit to cost ratio as an ordered list.
cycle() - Method in class ptolemy.graph.analysis.CycleMeanAnalysis
Return the nodes on the cycle that corresponds to the maximum/minimum cycle mean as an ordered list.
cycle() - Method in class ptolemy.graph.analysis.MaximumProfitToCostRatioAnalysis
Return the nodes on the cycle that corresponds to the maximum profit to cost ratio.
cycle() - Method in class ptolemy.graph.analysis.strategy.KarpCycleMeanStrategy
Return the nodes on the cycle that corresponds to the maximum/minimum cycle mean as an ordered list.
cycle() - Method in class ptolemy.graph.analysis.strategy.ParhiMaximumProfitToCostRatioStrategy
Return the nodes on the cycle that corresponds to the maximum profit to cost ratio.
CycleExistenceAnalysis - Class in ptolemy.graph.analysis
Analyzes a directed graph and detects the existence of cycles.
CycleExistenceAnalysis(Graph) - Constructor for class ptolemy.graph.analysis.CycleExistenceAnalysis
Construct an instance of this class for a given graph, using a default analyzer that runs in O(N^3) in which N is the number of nodes.
CycleExistenceAnalysis(CycleExistenceAnalyzer) - Constructor for class ptolemy.graph.analysis.CycleExistenceAnalysis
Construct an instance of this class with a given analyzer.
CycleExistenceAnalyzer - Interface in ptolemy.graph.analysis.analyzer
A common interface for all the cycle existence analyzers.
cycleMean(boolean) - Method in class ptolemy.graph.analysis.strategy.KarpCycleMeanStrategy
Finds the cycle mean for a given directed graph.
CycleMeanAnalysis - Class in ptolemy.graph.analysis
An analysis to calculate the maximum/minimum cycle mean of a directed cyclic graph.
CycleMeanAnalysis(Graph, ToDoubleMapping) - Constructor for class ptolemy.graph.analysis.CycleMeanAnalysis
Construct a maximum cycle mean analysis associated with a graph with a default analyzer.
CycleMeanAnalysis(CycleMeanAnalyzer) - Constructor for class ptolemy.graph.analysis.CycleMeanAnalysis
Construct a maximum cycle mean analysis associated with a graph with a given analyzer.
CycleMeanAnalyzer - Interface in ptolemy.graph.analysis.analyzer
A common interface for all the cycle mean analyzers.
cycleNodeCollection() - Method in class ptolemy.graph.DirectedGraph
Return the nodes that are in cycles.
cycleNodes() - Method in class ptolemy.graph.DirectedGraph
Return the nodes that are in cycles (weights version).
CyPhySimApplication - Class in ptolemy.actor.gui.jnlp
Wrapper class to start up CyPhySim, the Cyber-Physical Simulator.
CyPhySimApplication() - Constructor for class ptolemy.actor.gui.jnlp.CyPhySimApplication
 

D

D - Variable in class ptolemy.actor.lib.LinearDifferenceEquationSystem
The D matrix in the state-space representation.
D - Variable in class ptolemy.domains.continuous.lib.LinearStateSpace
The D matrix in the state-space representation.
DarwinCoreDataSource - Class in org.ecoinformatics.seek.datasource.darwincore
A ResultRecord that is in EML 2.0.0 format.
DarwinCoreDataSource(CompositeEntity, String) - Constructor for class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreDataSource
Construct an actor with the given container and name.
DarwinCoreMetaDataSpecification - Class in org.ecoinformatics.seek.datasource.darwincore
This class is a plugin for DarwinCore namespace to transfer query group to ecogrid query type.
DarwinCoreMetaDataSpecification() - Constructor for class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreMetaDataSpecification
Default constructor
DarwinCoreSchema - Class in org.ecoinformatics.seek.datasource.darwincore
The Darwin Core Schema instance.
DarwinCoreSchema() - Constructor for class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreSchema
Construct s an object to produce a DarwinCoreSchema
dashArray - Variable in class ptolemy.vergil.kernel.attributes.ShapeAttribute
Specification of the dash pattern for dashed or dotted lines.
data - Variable in class org.kepler.ddp.actor.pattern.DDPDataSource
An input token.
data - Variable in class org.kepler.gis.actor.io.GISWriter
The input data set to write.
data - Variable in class org.kepler.hadoop.io.TaggedValue
 
DATA - Static variable in class org.kepler.objectmanager.lsid.KeplerLSID
 
data - Variable in class org.kepler.spark.mllib.KMeansClustering
The input vectors.
data - Variable in class org.kepler.spark.mllib.KMeansModel
The input vectors.
data - Variable in class org.kepler.spark.mllib.RandomForestModel
Input data: RDD of LabeledPoint
DATA_NONE - Static variable in class org.kepler.provenance.sql.SQLRecording
The token data was not recorded.
DATA_TRUNCATED - Static variable in class org.kepler.provenance.sql.SQLRecording
The token data was too large to completely store.
DATA_VALID - Static variable in class org.kepler.provenance.sql.SQLRecording
The token data is valid.
dataArray - Variable in class org.ecoinformatics.seek.gis.java_gis.Grid
 
DatabaseAccessor - Class in org.geon
A base class for actors that access JDBC databases.
DatabaseAccessor(CompositeEntity, String) - Constructor for class org.geon.DatabaseAccessor
 
DatabaseFactory - Class in org.kepler.util.sql
A factory to instantiate and enumerate database types.
DatabaseFactory() - Constructor for class org.kepler.util.sql.DatabaseFactory
 
DatabaseFactory.Parameter - Enum in org.kepler.util.sql
 
databaseFormat - Variable in class org.geon.OpenDBConnection
 
DatabaseQuery - Class in org.geon
This actor performs database queries against a specific database.
DatabaseQuery(CompositeEntity, String) - Constructor for class org.geon.DatabaseQuery
Construct an actor with the given container and name.
DatabaseTableCreator - Class in org.kepler.actor.database
Create a database table if the table doesn't exist.
DatabaseTableCreator(CompositeEntity, String) - Constructor for class org.kepler.actor.database.DatabaseTableCreator
 
DatabaseType - Class in org.kepler.util.sql
This class provides utility routines for accessing SQL databases.
DatabaseType() - Constructor for class org.kepler.util.sql.DatabaseType
 
databaseURL - Variable in class org.geon.OpenDBConnection
 
DatabaseWriter - Class in org.sdm.spa
This actor performs database updates and returns the number of updated rows.
DatabaseWriter(CompositeEntity, String) - Constructor for class org.sdm.spa.DatabaseWriter
Construct an actor with the given container and name.
DataCacheFileObject - Class in org.kepler.objectmanager.cache
This class is not as generic as the name may indicate.
DataCacheFileObject() - Constructor for class org.kepler.objectmanager.cache.DataCacheFileObject
A DataCacheFileObject object that can point to an itnernal file or external file object
DataCacheGetActor - Class in org.kepler.objectmanager.cache
 
DataCacheGetActor(CompositeEntity, String) - Constructor for class org.kepler.objectmanager.cache.DataCacheGetActor
 
DataCacheListener - Interface in org.kepler.objectmanager.cache
 
DataCacheManager - Class in org.kepler.objectmanager.cache
 
DataCacheObject - Class in org.kepler.objectmanager.cache
Represents an item in the cache
DataCacheObject() - Constructor for class org.kepler.objectmanager.cache.DataCacheObject
Constructor
DataCachePutActor - Class in org.kepler.objectmanager.cache
 
DataCachePutActor(CompositeEntity, String) - Constructor for class org.kepler.objectmanager.cache.DataCachePutActor
 
dataConnectWidth - Variable in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Parameter specifying the width of the stroke connecting data points This is an int that defaults to 2.
dataDocidPort - Variable in class org.ecoinformatics.seek.ecogrid.EcogridWriter
Broadcasts the data docid, which is generated by the actor for future reference.
DataFileInputFormat - Class in org.kepler.stratosphere.io.input
Read the whole file as one pair.
DataFileInputFormat() - Constructor for class org.kepler.stratosphere.io.input.DataFileInputFormat
 
dataFilePath - Variable in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource
The file path for locating a data file that is available from the local file system
DataGridTransfer - Class in org.srb
DataGridTransfer is a Kepler Actor which has a functionality similar to the SRB/IRODS commands, namely Sget, Sput, iget, and iput.
DataGridTransfer(CompositeEntity, String) - Constructor for class org.srb.DataGridTransfer
Construct a constant source with the given container and name.
dataIn - Variable in class org.kepler.spark.mllib.SVMApply
The JavaRDD of test data taken as input
dataJSON - Variable in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Parameter giving the data traces in JSON format to be plot.
dataMarkerRadius - Variable in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Parameter specifying the radius of markers for data points.
dataMD5 - Variable in class org.kepler.provenance.sql.SQLRecordingV8.TokenInfo
The MD5 checksum.
DataObjectDescription - Class in org.kepler.objectmanager.data
This object represents an DataObjectDescription.
DataObjectDescription(String, String, String) - Constructor for class org.kepler.objectmanager.data.DataObjectDescription
Construct a DataObjectDescription.
DataObjectDescription(String, String, String, String) - Constructor for class org.kepler.objectmanager.data.DataObjectDescription
Construct a DataObjectDescription with a description.
DataOneActor - Class in org.kepler.data.datasource.dataone
 
DataOneActor(CompositeEntity, String) - Constructor for class org.kepler.data.datasource.dataone.DataOneActor
 
dataOutputFormat - Variable in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource
The format of the output to be produced for the data entity.
dataPointFileName - Variable in class org.ecoinformatics.seek.garp.GarpPresampleLayers
This input port can be used to supply the file name of the file that contains the known locations to be used to determine a ruleset for predicting other locations from the spatial environment layers.
dataPointFileNameParameter - Variable in class org.ecoinformatics.seek.garp.GarpPresampleLayers
This parameter is the file name of the file that contains the known locations to be used to determine a ruleset for predicting other locations from the spatial environment layers.
DataQueryAction - Class in org.ecoinformatics.seek.dataquery
This abract class handle data query action
DataQueryAction() - Constructor for class org.ecoinformatics.seek.dataquery.DataQueryAction
 
dataReceived(String, Object) - Method in class org.kepler.webview.actor.WebView
 
DATAROW - Static variable in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreDataSource
 
DataSearchResultTree - Class in org.ecoinformatics.seek.ecogrid.quicksearch
This class extends the PTree class of Ptolemy.
DataSearchResultTree(TreeModel, ResultPanel) - Constructor for class org.ecoinformatics.seek.ecogrid.quicksearch.DataSearchResultTree
Consturctor of Tree.
DatasetPanel - Class in org.ecoinformatics.seek.ecogrid.quicksearch
This class will display a panel for search and search result from ecogrid service.
DatasetPanel(TableauFrame) - Constructor for class org.ecoinformatics.seek.ecogrid.quicksearch.DatasetPanel
Set up the pane with preference size and configuration for search
DatasetPanel.Factory - Class in org.ecoinformatics.seek.ecogrid.quicksearch
A factory that creates the library panel for the editors.
DatasetToJson - Class in org.kepler.spark.mllib
 
DatasetToJson(CompositeEntity, String) - Constructor for class org.kepler.spark.mllib.DatasetToJson
 
datasetURL - Variable in class org.geon.XMLToADN
Dataset URL.
DataSink - Class in org.kepler.spark.operator
An operator for writing data.
DataSink(int, Object, String) - Constructor for class org.kepler.spark.operator.DataSink
Create a new DataSink.
DataSource - Class in org.kepler.spark.operator
An operator for reading data.
DataSource(Object, String) - Constructor for class org.kepler.spark.operator.DataSource
Create a new DataSource.
DataSourceControllerFactory - Class in org.kepler.objectmanager.data
This is attribute that produces a custom node controller for Data Sources.
DataSourceControllerFactory(NamedObj, String) - Constructor for class org.kepler.objectmanager.data.DataSourceControllerFactory
Construct a new factory with the given container and name.
DataSourceIcon - Class in org.ecoinformatics.seek.datasource
 
DataSourceIcon(NamedObj) - Constructor for class org.ecoinformatics.seek.datasource.DataSourceIcon
Create the DataSource Icon.
DataSourceInstanceController - Class in org.kepler.objectmanager.data
This class provides a controller that overrides the default GetDocumentation actions for data sources and can transform data source documentation to HTML format before displaying it.
DataSourceInstanceController(GraphController) - Constructor for class org.kepler.objectmanager.data.DataSourceInstanceController
Create an actor instance controller associated with the specified graph controller with full access.
DataSourceInstanceController(GraphController, AttributeController.Access) - Constructor for class org.kepler.objectmanager.data.DataSourceInstanceController
Create an entity controller associated with the specified graph controller with the specified access.
DataSourceInstanceController.GetDSDocumentationAction - Class in org.kepler.objectmanager.data
This is an action that accesses the documentation for a Ptolemy object associated with a figure.
DataSourceInterface - Interface in org.kepler.dataproxy.datasource
Title:PlugInQueryTransferInterface Description: This is a plugin interface and it defines a all methods any metadata type should implement into order to search ecogrid service and parse the results Copyright: Copyright (c) 2004 Company:
DataSrcProgressFrame - Class in org.kepler.objectmanager.data
 
DataSrcProgressFrame(String) - Constructor for class org.kepler.objectmanager.data.DataSrcProgressFrame
Constructor
DATATABLE - Static variable in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreDataSource
 
DataTable - Class in org.kepler.plotting
Created by IntelliJ IDEA.
DataTable(PlotEditor) - Constructor for class org.kepler.plotting.DataTable
 
DataTurbine - Class in org.kepler.data.datasource.dataturbine
The DataTurbine actor retrieves and outputs data from an RBNB DataTurbine server.
DataTurbine(CompositeEntity, String) - Constructor for class org.kepler.data.datasource.dataturbine.DataTurbine
Construct a DataTurbine source with the given container and name.
dataTurbineAddressInputParam - Variable in class org.kepler.data.datasource.dataturbine.DataTurbine
The URL to the DataTurbine Server
DataTurbineWriter - Class in org.kepler.data.datasource.dataturbine
An actor that writes data to a DataTurbine server.
DataTurbineWriter(CompositeEntity, String) - Constructor for class org.kepler.data.datasource.dataturbine.DataTurbineWriter
Construct a new DataTurbineWriter with a container and name.
dataType - Variable in class org.ecoinformatics.seek.gis.grass.GrassExportActor
 
dataType - Variable in class org.ecoinformatics.seek.gis.grass.GrassImportActor
 
dataType - Variable in class org.kepler.objectmanager.data.DataObjectDescription
 
DataType - Class in org.kepler.objectmanager.data
 
DataType(String, double, double, String, String[]) - Constructor for class org.kepler.objectmanager.data.DataType
Constructor.
DataTypeResolver - Class in org.kepler.objectmanager.data
This class takes in information from the metadata parsers and tries to intelligently guess as to the data type of an attribute based on provided metadata. since different metadata standards provide differing levels of complexity in their attribute level descriptions, some guesses may be better than others, but this class, should at least be able to distinguish between, whole (integer), real (float) and text (string) types.
date - Variable in class org.kepler.gis.actor.kml.KMLWriter
The date to use for the timestamp of each feature.
date - Variable in class org.kepler.gis.actor.kml.WriteTimestampToKML
The timestamp to set.
date(String) - Static method in class ptolemy.data.DateToken
Create a DateToken with a value.
DATE - Static variable in class ptolemy.data.type.BaseType
The DateToken data type.
date1 - Variable in class org.kepler.date.DateDifference
Input date.
date2 - Variable in class org.kepler.date.DateDifference
Input date.
DATE_FORMAT - Static variable in class org.kepler.gis.actor.pylaski.PylaskiProperty
 
DATE_FORMAT - Static variable in class org.kepler.gis.actor.pylaski.PylaskiUtilities
The format of the date/time values provided by the Pylaski API
DateCellEditor - Class in org.kepler.workflowrunmanager.gui
 
DateCellEditor(JTextField) - Constructor for class org.kepler.workflowrunmanager.gui.DateCellEditor
 
DateConstructor - Class in ptolemy.actor.lib
Construct date token by parsing all date elements (year, day, month, ...).
DateConstructor(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.DateConstructor
Construct an actor with the given container and name.
DateDifference - Class in org.kepler.date
Calculate the (floor of the) difference between two dates in minutes, hours, days, months, etc.
DateDifference(CompositeEntity, String) - Constructor for class org.kepler.date.DateDifference
Construct a DateDifference with the given container and name.
DateElements - Class in ptolemy.actor.lib
Output elements of date (year, month, day, hour, etc.) from date.
DateElements(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.DateElements
Construct an actor with the given container and name.
dates - Variable in class org.kepler.workflowrunmanager.StartTimeQueryParse
 
DateSequence - Class in org.kepler.date
An actor that generates a sequence of dates between a starting and stopping date.
DateSequence(CompositeEntity, String) - Constructor for class org.kepler.date.DateSequence
 
DATETIME - Static variable in class org.ecoinformatics.seek.dataquery.DBTablesGenerator
 
DATETIME - Static variable in class org.kepler.objectmanager.data.DataType
 
DateTimeDomain - Class in org.kepler.objectmanager.data
 
DateTimeDomain() - Constructor for class org.kepler.objectmanager.data.DateTimeDomain
Constructor setup numberType for this domain
dateTimeFormats - Variable in class org.kepler.workflowrunmanager.StartTimeQueryParse
 
DATETIMETYPE - Static variable in class org.kepler.objectmanager.data.DataType
 
DateToEvent - Class in ptolemy.domains.de.lib
A timed actor that accepts DateTokens on the input.
DateToEvent(CompositeEntity, String) - Constructor for class ptolemy.domains.de.lib.DateToEvent
Create a new actor in the specified container with the specified name.
DateToken - Class in ptolemy.data
A token that contains a date.
DateToken() - Constructor for class ptolemy.data.DateToken
Construct a date token.
DateToken(long) - Constructor for class ptolemy.data.DateToken
Construct a DateToken that represents the time since January 1, 1970.
DateToken(long, int) - Constructor for class ptolemy.data.DateToken
Construct a DateToken that represents the time since January 1, 1970.
DateToken(long, int, String) - Constructor for class ptolemy.data.DateToken
Construct a DateToken that represents the time since January 1, 1970.
DateToken(long, int, TimeZone) - Constructor for class ptolemy.data.DateToken
Construct a DateToken that represents the time since January 1, 1970.
DateToken(String) - Constructor for class ptolemy.data.DateToken
Construct a DateToken that represents the time specified as a string.
DateToModelTime - Class in ptolemy.domains.de.lib
A timed actor that outputs the local clock value that corresponds to the date.
DateToModelTime(CompositeEntity, String) - Constructor for class ptolemy.domains.de.lib.DateToModelTime
Create a new actor in the specified container with the specified name.
DateToString - Class in org.kepler.date
Convert a date token to a string using a specific format.
DateToString(CompositeEntity, String) - Constructor for class org.kepler.date.DateToString
Construct a DateToString with the given container and name.
DateToString - Class in ptolemy.actor.lib.conversions
Convert a date to a string.
DateToString(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.conversions.DateToString
Construct an actor with the given container and name.
DAY - Static variable in class org.kepler.workflowscheduler.gui.Schedule
 
day - Variable in class ptolemy.actor.lib.DateConstructor
The day of the month.
day - Variable in class ptolemy.actor.lib.DateElements
Day of the month of date received on input.
DB - Class in ptolemy.actor.lib
Produce a token that is the value of the input in decibels.
DB(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.DB
Construct an actor in the specified container with the specified name.
db_jdbc_connection_string - Variable in class org.eol.WmsdActor
 
db_password - Variable in class org.eol.WmsdActor
 
db_username - Variable in class org.eol.WmsdActor
 
dbcon - Variable in class org.eol.WmsdActor
Construct an actor with the given container and name.
dbcon - Variable in class org.geon.CloseDBConnection
A reference to the database connection
dbcon - Variable in class org.geon.DatabaseAccessor
A reference to the database connection.
dbcon - Variable in class org.geon.OpenDBConnection
A reference to a db connection
dbcon - Variable in class org.geon.TransitiveClosureDBQuery
A reference to the database connection.
DBCONNECTION - Static variable in class org.geon.DBConnectionToken
The DBConnection type: the least upper bound of all the cryptographic key types.
DBConnectionToken - Class in org.geon
A token that contains a reference to a database connection.
DBConnectionToken() - Constructor for class org.geon.DBConnectionToken
Construct an empty token.
DBConnectionToken(Connection) - Constructor for class org.geon.DBConnectionToken
Construct a token with a reference to the specified connection.
DBConnectionToken.DBConnectionType - Class in org.geon
The database connection type.
dbconTokenConsumptionRate - Variable in class org.geon.DatabaseAccessor
Parameter to change token consumption rate on dbcon.
DBDataTypeResolver - Class in org.ecoinformatics.seek.dataquery
This class will resolve a data type in HSQL for a given data type in Attribute object
DBDataTypeResolver() - Constructor for class org.ecoinformatics.seek.dataquery.DBDataTypeResolver
Constructor get two mapping from lib/config.xml file.
DBDisplayItemIFace - Interface in org.ecoinformatics.seek.querybuilder
This interface is implemented by classes that are "fields" to be displayed
DBFileFilter - Class in org.ecoinformatics.seek.querybuilder
Adapted from the Swing JFileChooser demo and the ExampleFileFilter file
DBFileFilter() - Constructor for class org.ecoinformatics.seek.querybuilder.DBFileFilter
Creates a file filter.
DBFileFilter(String) - Constructor for class org.ecoinformatics.seek.querybuilder.DBFileFilter
Creates a file filter that accepts files with the given extension.
DBFileFilter(String, String) - Constructor for class org.ecoinformatics.seek.querybuilder.DBFileFilter
Creates a file filter that accepts the given file type.
DBFileFilter(String[]) - Constructor for class org.ecoinformatics.seek.querybuilder.DBFileFilter
Creates a file filter from the given string array.
DBFileFilter(String[], String) - Constructor for class org.ecoinformatics.seek.querybuilder.DBFileFilter
Creates a file filter from the given string array and mDescription.
DBJoinPrcTable - Class in org.ecoinformatics.seek.querybuilder
 
DBJoinPrcTable(DSTableIFace) - Constructor for class org.ecoinformatics.seek.querybuilder.DBJoinPrcTable
 
dbParams - Variable in class org.geon.DatabaseAccessor
A record token containing parameters to create a database connection.
dbParams - Variable in class org.geon.OpenDBConnection
A record containing parameters to create a db connection.
dbParams - Variable in class org.kepler.actor.database.DatabaseTableCreator
Parameter to access a database.
dbPrefix - Variable in class org.eol.WmsdActor
 
DBQueryDef - Class in org.ecoinformatics.seek.querybuilder
This class represents a single query.
DBQueryDef() - Constructor for class org.ecoinformatics.seek.querybuilder.DBQueryDef
Default Constructor
DBQueryDefParserEmitter - Class in org.ecoinformatics.seek.querybuilder
This is class is used to parse XML and create a DBQueryDef object and/or emit XML from a DBQuery object
Call "readQueryDef" for reading in a query
Call "emitXML" to generate the XML
DBQueryDefParserEmitter() - Constructor for class org.ecoinformatics.seek.querybuilder.DBQueryDefParserEmitter
 
DBQueryDefTable - Class in org.ecoinformatics.seek.querybuilder
Represents a table and it's X,Y position on the "drawing canvas"
NOTE: the x,y attributes are "hints" for UI layout, but are not required.
DBQueryDefTable(int, String, int, int) - Constructor for class org.ecoinformatics.seek.querybuilder.DBQueryDefTable
Constructor
DBSchemaParserEmitter - Class in org.ecoinformatics.seek.querybuilder
This class can generate XML from a DSSchemaIFace object or create a schema from and XML dcoument
DBSchemaParserEmitter() - Constructor for class org.ecoinformatics.seek.querybuilder.DBSchemaParserEmitter
 
DBSelectTableFieldChangedListener - Interface in org.ecoinformatics.seek.querybuilder
Interface used to listener to changes from a table field
DBSelectTableModelAdv - Class in org.ecoinformatics.seek.querybuilder
This class extends DBSelectTableModelBase and is used to enabled the user to indicate which items will be displayed.
DBSelectTableModelAdv(DSSchemaIFace) - Constructor for class org.ecoinformatics.seek.querybuilder.DBSelectTableModelAdv
Constructor for Table Model
DBSelectTableModelBase - Class in org.ecoinformatics.seek.querybuilder
This classes is the abstract "base" class implementation of the model that is used in the JTables.
DBSelectTableModelBase(DSSchemaIFace) - Constructor for class org.ecoinformatics.seek.querybuilder.DBSelectTableModelBase
Constructor for Table Model
DBSelectTableModelDeleteAction - Class in org.ecoinformatics.seek.querybuilder
This class will express an action which will delete a selected row from DBselectTableModel
DBSelectTableModelDeleteAction(String, DBSelectTableUIBase, DBSelectTableModelStd, int) - Constructor for class org.ecoinformatics.seek.querybuilder.DBSelectTableModelDeleteAction
Conscturct
DBSelectTableModelItem - Class in org.ecoinformatics.seek.querybuilder
This class represents each row in the JTable that enables the user to select a specific field in table and any additional information that can be changed.
DBSelectTableModelItem() - Constructor for class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
Default Constructor
DBSelectTableModelItem(String, String, String, boolean, String, String, Vector) - Constructor for class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
Constructor with args
DBSelectTableModelItem(DBSelectTableModelItem) - Constructor for class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
Copy Constructor
DBSelectTableModelItem(DBDisplayItemIFace) - Constructor for class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
Constructor from DBTableField
DBSelectTableModelStd - Class in org.ecoinformatics.seek.querybuilder
This class extends DBSelectTableModelBase and is used to enabled the user to indicate which items will be displayed, the boolean operator for the criteria and the criteria.
DBSelectTableModelStd(DSSchemaIFace, Hashtable) - Constructor for class org.ecoinformatics.seek.querybuilder.DBSelectTableModelStd
Constructor for Table Model
DBSelectTableOverviewModel - Class in org.ecoinformatics.seek.querybuilder
This derived class is used for representing a table's schema in a UI "tab"
DBSelectTableOverviewModel(DSTableIFace) - Constructor for class org.ecoinformatics.seek.querybuilder.DBSelectTableOverviewModel
Constructor for Table Model
DBSelectTableOverviewTable - Class in org.ecoinformatics.seek.querybuilder
The JTable of the table schema for "overview", meaning it only displays the field name and the datatype.
DBSelectTableOverviewTable(DBSelectTableOverviewModel) - Constructor for class org.ecoinformatics.seek.querybuilder.DBSelectTableOverviewTable
Constructor
DBSelectTableUIAdv - Class in org.ecoinformatics.seek.querybuilder
This is the is derived from the abstract base class DBSelectTableUIBase, that displays all the items to be displayed as part of the query.
DBSelectTableUIAdv() - Constructor for class org.ecoinformatics.seek.querybuilder.DBSelectTableUIAdv
Default Constructor
DBSelectTableUIBase - Class in org.ecoinformatics.seek.querybuilder
The JTable abstract base class for rendering portions (or all) of the select statement.
DBSelectTableUIBase() - Constructor for class org.ecoinformatics.seek.querybuilder.DBSelectTableUIBase
Constructs a Table "View" which allows DBTable items to be dropped onto it
DBSelectTableUIBase.JComboBoxCellRenderer - Class in org.ecoinformatics.seek.querybuilder
 
DBSelectTableUIBase.PopupListener - Class in org.ecoinformatics.seek.querybuilder
 
DBSelectTableUIStd - Class in org.ecoinformatics.seek.querybuilder
Used to render the table of items (rows) that make up the entire query.
DBSelectTableUIStd() - Constructor for class org.ecoinformatics.seek.querybuilder.DBSelectTableUIStd
Default Constructor
DBsetupvars() - Method in class org.geon.LidarJobDB
 
DBsetupvars() - Method in class org.geon.LidarUtilities
 
DBTableDesktopPane - Class in org.ecoinformatics.seek.querybuilder
Overrides JDesktopPane for laying out all the tables
DBTableDesktopPane() - Constructor for class org.ecoinformatics.seek.querybuilder.DBTableDesktopPane
DBTableDesktopPane Constructor
DBTableExistenceChecker - Class in org.ecoinformatics.seek.dataquery
This class will check if a given table name already existed in db.
DBTableExistenceChecker() - Constructor for class org.ecoinformatics.seek.dataquery.DBTableExistenceChecker
 
DBTableField - Class in org.ecoinformatics.seek.querybuilder
A field in the table frame.
DBTableField() - Constructor for class org.ecoinformatics.seek.querybuilder.DBTableField
Default Constructor
DBTableField(DSTableFieldIFace, DBTableFrame) - Constructor for class org.ecoinformatics.seek.querybuilder.DBTableField
Constructor
DBTableFrame - Class in org.ecoinformatics.seek.querybuilder
Extends JInternalFrame and contains a list of the fields.
DBTableFrame(DSTableIFace, int) - Constructor for class org.ecoinformatics.seek.querybuilder.DBTableFrame
Default Constructor
DBTableJoin - Class in org.ecoinformatics.seek.querybuilder
This class maintains all the joins for the query.
DBTableJoin(DBTableDesktopPane) - Constructor for class org.ecoinformatics.seek.querybuilder.DBTableJoin
Constructor takes Schema object (interface)
DBTableJoinItem - Class in org.ecoinformatics.seek.querybuilder
 
DBTableJoinItem(DBTableField, DBTableField) - Constructor for class org.ecoinformatics.seek.querybuilder.DBTableJoinItem
Constructor with DBTableFields
DBTableList - Class in org.ecoinformatics.seek.querybuilder
The JList that resides inside the TableFrame.
DBTableList(DBTableListModel) - Constructor for class org.ecoinformatics.seek.querybuilder.DBTableList
Constructor with DBTableListModel DataModel
DBTableListModel - Class in org.ecoinformatics.seek.querybuilder
THis class is the model for each Table Frame List
DBTableListModel(DBTableFrame) - Constructor for class org.ecoinformatics.seek.querybuilder.DBTableListModel
Constructor - KNows who the table frame is
DBTableNameResolver - Class in org.ecoinformatics.seek.dataquery
This class will try to generate a unique table name base on a given TableEntity object.
DBTableNameResolver() - Constructor for class org.ecoinformatics.seek.dataquery.DBTableNameResolver
 
DBTablesGenerator - Class in org.ecoinformatics.seek.dataquery
The class to generate db tables base table entity
DBTablesGenerator(Entity, InputStream) - Constructor for class org.ecoinformatics.seek.dataquery.DBTablesGenerator
This constructor is for non-text file table.
DBTablesGenerator(Entity, String) - Constructor for class org.ecoinformatics.seek.dataquery.DBTablesGenerator
This constructor is for text file table.
DBTablesGenerator(Entity, InputStream, boolean) - Constructor for class org.ecoinformatics.seek.dataquery.DBTablesGenerator
This constructor is for non-text file table.
DBTablesGenerator(Entity, String, boolean) - Constructor for class org.ecoinformatics.seek.dataquery.DBTablesGenerator
This constructor is for text file table.
DBUIUtils - Class in org.ecoinformatics.seek.querybuilder
A set of uttiliy methods (all static)
DBUIUtils() - Constructor for class org.ecoinformatics.seek.querybuilder.DBUIUtils
 
DBWhereCondition - Class in org.ecoinformatics.seek.querybuilder
THis class is a model class for a condition of a where clause
DBWhereCondition(DBWhereOperator, String, String, String) - Constructor for class org.ecoinformatics.seek.querybuilder.DBWhereCondition
Constructor
DBWhereCondition(DBWhereOperator, DBWhereCondition) - Constructor for class org.ecoinformatics.seek.querybuilder.DBWhereCondition
Copy Constructor (does not copy parent), sets it to the new parent
DBWhereIFace - Interface in org.ecoinformatics.seek.querybuilder
Interface class that enables the manipulation of either operators or conditions
DBWhereList - Class in org.ecoinformatics.seek.querybuilder
This class is used to draw the nested where clause.
DBWhereList(DSSchemaIFace, DBWhereModel) - Constructor for class org.ecoinformatics.seek.querybuilder.DBWhereList
Constructor with DBWhereModel DataModel
DBWhereListCellBase - Class in org.ecoinformatics.seek.querybuilder
This class is derived from DBSelectTableModelItem so we can pick up some basic funcationality for getting and setting of the name and criteria etc.
DBWhereListCellBase(DBWhereOperator) - Constructor for class org.ecoinformatics.seek.querybuilder.DBWhereListCellBase
Constructor
DBWhereModel - Class in org.ecoinformatics.seek.querybuilder
This class represents the model for the JList class.
DBWhereModel() - Constructor for class org.ecoinformatics.seek.querybuilder.DBWhereModel
Default Constructor
DBWhereOperator - Class in org.ecoinformatics.seek.querybuilder
A boolean operator class that can "contain" one or more conditions (DBWhereCondition).
DBWhereOperator(DBWhereOperator, boolean) - Constructor for class org.ecoinformatics.seek.querybuilder.DBWhereOperator
Constructor - Creates a "closure" object, Must be manually add and removed from parent the closure object must also be manually added and removed
DBWhereOperator(DBWhereOperator, DBWhereOperator) - Constructor for class org.ecoinformatics.seek.querybuilder.DBWhereOperator
Copy Constructor - Copy all fields, but creates a new "closure" object, Must be manually add and removed from parent the closure object must also be manually added and removed
DBWherePanel - Class in org.ecoinformatics.seek.querybuilder
This class is a JPanel that contains the list of Where OPerator and Condition objects.
DBWherePanel(DSSchemaIFace) - Constructor for class org.ecoinformatics.seek.querybuilder.DBWherePanel
Constructor
DCT(double[]) - Static method in class ptolemy.math.SignalProcessing
Return a new array of doubles that is the forward, normalized DCT of the input array of doubles.
DCT(double[], int) - Static method in class ptolemy.math.SignalProcessing
Return a new array of doubles that is the forward, normalized DCT of the input array of doubles.
DCT(double[], int, int) - Static method in class ptolemy.math.SignalProcessing
Return a new array of doubles that is the forward DCT of the input array of doubles.
DCT_TYPE_NORMALIZED - Static variable in class ptolemy.math.SignalProcessing
To select the forward transform : N - 1
X[k] = e[k] sum x[n] * cos ((2n + 1)k * PI / 2N)
n = 0
and the inverse transform : N - 1
x(n) = (2/N) sum e(k) X[k] * cos ((2n + 1)k * PI / 2N)
k = 0
use this DCT type.
DCT_TYPE_ORTHONORMAL - Static variable in class ptolemy.math.SignalProcessing
To select the forward transform : N - 1 X[k] = sqrt(2/N) e[k] sum x[n] * cos ((2n + 1)k * PI / 2N) n = 0 and the inverse transform : N - 1 x[n] = sqrt(2/N) sum e[k] X[k] * cos ((2n + 1)k * PI / 2N) k = 0 use this DCT type.
DCT_TYPE_UNNORMALIZED - Static variable in class ptolemy.math.SignalProcessing
To select the forward transform : N - 1 X[k] = sum x[n] * cos ((2n + 1)k * PI / 2N) n = 0 and the inverse transform : N - 1 x[n] = sum X[k] * cos ((2n + 1)k * PI / 2N) k = 0 use this DCT type.
DCT_TYPES - Static variable in class ptolemy.math.SignalProcessing
The number of DCT types supported.
DDFBooleanSelect - Class in ptolemy.domains.ddf.lib
A type polymorphic select with boolean valued control for use in the DDF domain.
DDFBooleanSelect(CompositeEntity, String) - Constructor for class ptolemy.domains.ddf.lib.DDFBooleanSelect
Construct an actor in the specified container with the specified name.
DDFDirector - Class in ptolemy.domains.ddf.kernel
The dynamic dataflow (DDF) domain is a superset of the synchronous dataflow(SDF) and Boolean dataflow(BDF) domains.
DDFDirector() - Constructor for class ptolemy.domains.ddf.kernel.DDFDirector
Construct a director in the default workspace with an empty string as its name.
DDFDirector(Workspace) - Constructor for class ptolemy.domains.ddf.kernel.DDFDirector
Construct a director in the workspace with an empty name.
DDFDirector(CompositeEntity, String) - Constructor for class ptolemy.domains.ddf.kernel.DDFDirector
Construct a director in the given container with the given name.
DDFOrderedMerge - Class in ptolemy.domains.ddf.lib
Deprecated.
Use OrderedMerge, which now supports DDF.
DDFOrderedMerge(CompositeEntity, String) - Constructor for class ptolemy.domains.ddf.lib.DDFOrderedMerge
Deprecated.
Construct an actor with the given container and name.
DDFSelect - Class in ptolemy.domains.ddf.lib
A type polymorphic select, which routes specified input channels to the output, used in the DDF domain.
DDFSelect(CompositeEntity, String) - Constructor for class ptolemy.domains.ddf.lib.DDFSelect
Construct an actor in the specified container with the specified name.
DDFSingleTokenCommutator - Class in ptolemy.domains.ddf.lib
The DDFSingleTokenCommutator has a multiport input port and an output port.
DDFSingleTokenCommutator(CompositeEntity, String) - Constructor for class ptolemy.domains.ddf.lib.DDFSingleTokenCommutator
Construct an actor in the specified container with the specified name.
DDPDataSink - Class in org.kepler.ddp.actor.pattern
This actor writes data to the storage system for a DDP workflow.
DDPDataSink(CompositeEntity, String) - Constructor for class org.kepler.ddp.actor.pattern.DDPDataSink
Construct a new FileDataSink in a container with a given name.
DDPDataSource - Class in org.kepler.ddp.actor.pattern
This actor reads data from the storage system into downstream DDP pattern actors.
DDPDataSource(CompositeEntity, String) - Constructor for class org.kepler.ddp.actor.pattern.DDPDataSource
Construct a new FileDataSource in a container with a given name.
DDPDirector - Class in org.kepler.ddp.director
A director that converts DDP pattern actors (Map, Reduce, Cross, CoGroup, and Match) and I/O actors (DDPDataSink and DDPDataSource) into a job that is executed on a DDP engine such as Hadoop or Stratosphere.
DDPDirector(CompositeEntity, String) - Constructor for class org.kepler.ddp.director.DDPDirector
Construct a new DDPBaseDirector in a container with a given name.
DDPDirector(Workspace) - Constructor for class org.kepler.ddp.director.DDPDirector
Construct a new DDPBaseDirector for a workspace.
DDPEngine - Class in org.kepler.ddp.director
A base class for DDP engines.
DDPEngine(DDPDirector) - Constructor for class org.kepler.ddp.director.DDPEngine
Create a new DDPEngine.
DDPPatternActor - Interface in org.kepler.ddp.actor.pattern
An interface for all DDP pattern actors.
DDPPatternActorUtil - Class in org.kepler.hadoop.util
This class includes a datatype used in HadoopDirector.
DDPPatternActorUtil(SingleInputPatternActor, String, String, Map<String, Type>) - Constructor for class org.kepler.hadoop.util.DDPPatternActorUtil
 
DDPPatternActorUtil(SingleInputPatternActor, String, String, String, String) - Constructor for class org.kepler.hadoop.util.DDPPatternActorUtil
 
deAccess() - Method in class ptolemy.kernel.util.test.AccessAction
 
deactivate() - Method in class org.kepler.provenance.gui.DisabledGlassPane
 
deactivate(boolean) - Method in class org.mlc.swing.layout.FormDebugPanel
 
deactivateBranches() - Method in class ptolemy.actor.process.BranchController
Deactivate the branches assigned to this branch controller.
DEActor - Class in ptolemy.domains.de.kernel
The base class for actors specific to the DE domain.
DEActor(CompositeEntity, String) - Constructor for class ptolemy.domains.de.kernel.DEActor
Construct an actor with the specified container and name.
deadlockStates() - Method in class ptolemy.domains.modal.kernel.ia.InterfaceAutomaton
Return the deadlock states in a Set.
DeadlockStates - Class in ptolemy.domains.modal.kernel.test
Display the deadlock states.
DeadlockStates(String) - Constructor for class ptolemy.domains.modal.kernel.test.DeadlockStates
Write the names of the deadlock states of the specified interface automaton to stdout.
deAnnotateGraph() - Method in class ptolemy.vergil.unit.UnitSolverDialog
Remove all the annotations from the graph.
debug() - Method in class org.kepler.kar.KARManager
 
debug(String) - Method in class org.kepler.scriptengine.ScriptEngineActor
Send the message to all registered debug listeners.
debug(String) - Method in class ptolemy.actor.lib.python.PythonScript
Send the message to all registered debug listeners.
debug(DebugEvent) - Method in class ptolemy.kernel.util.test.TestPtolemyThread
Send a debug event to all debug listeners that have registered.
debug(String) - Method in class ptolemy.kernel.util.test.TestPtolemyThread
Send a debug message to all debug listeners that have registered.
DebugController - Class in ptolemy.vergil.debugger
An execution listener that suspends execution based on breakpoints.
DebugController(NamedObj, String) - Constructor for class ptolemy.vergil.debugger.DebugController
Construct a debug listener with the given container and name.
DebugEvent - Interface in ptolemy.kernel.util
An interface for events that can be used for debugging.
Debuggable - Interface in ptolemy.kernel.util
This is an interface for objects that debug listeners can be attached to.
DebugListener - Interface in ptolemy.kernel.util
Interface for listeners that receive debug messages.
DebugListenerFrame() - Constructor for class ptolemy.actor.gui.DebugListenerTableau.DebugListenerFrame
Create a debug listener that displays messages in a top-level window.
DebugListenerTableau - Class in ptolemy.actor.gui
A tableau representing a debug listener window.
DebugListenerTableau(Effigy, String) - Constructor for class ptolemy.actor.gui.DebugListenerTableau
Construct a new tableau for the model represented by the given effigy.
DebugListenerTableau.DebugListenerFrame - Class in ptolemy.actor.gui
This class is a top-level window for displaying textual debug output from an instance of Debuggable.
DebugMenuListener() - Constructor for class ptolemy.actor.gui.RunTableau.RunFrame.DebugMenuListener
 
DebugMenuListener() - Constructor for class ptolemy.vergil.actor.ActorGraphFrame.DebugMenuListener
 
DebugMenuListener() - Constructor for class ptolemy.vergil.modal.FSMGraphFrame.DebugMenuListener
 
debugOutput - Variable in class org.kepler.spark.mllib.KMeansApply
Debug output port
DebugProfile - Class in ptolemy.vergil.debugger
Profile for an actor being debugged.
DebugProfile(BasicGraphController) - Constructor for class ptolemy.vergil.debugger.DebugProfile
Construct a debug profile for an actor with the associated GraphController.
DebugRenderer - Class in ptolemy.vergil.kernel
Highlight objects in magenta, rather than red or yellow.
DebugRenderer() - Constructor for class ptolemy.vergil.kernel.DebugRenderer
Create a new selection renderer with the default prototype decorator.
DebugRenderer(FigureDecorator) - Constructor for class ptolemy.vergil.kernel.DebugRenderer
Create a new renderer with the given prototype decorator.
debugStream - Variable in class ptolemy.data.expr.MatrixParserTokenManager
Debug output.
debugStream - Variable in class ptolemy.data.expr.PtParserTokenManager
Debug output.
debugStream - Variable in class ptolemy.moml.unit.UParserTokenManager
Debug output.
debugString() - Method in class org.kepler.kar.KARCacheError
 
debugString() - Method in class org.kepler.moml.KeplerActorMetadata
 
debugString() - Method in class org.kepler.objectmanager.library.LibItem
 
decibel(double) - Static method in class ptolemy.math.SignalProcessing
Deprecated.
Use toDecibels() instead.
decibel(double[]) - Static method in class ptolemy.math.SignalProcessing
Deprecated.
Use toDecibels() instead.
DECIMAL_LITERAL - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
DecimalFormatConverter - Class in org.kepler.actor
This actor will generate a number based on the specified format.
DecimalFormatConverter(CompositeEntity, String) - Constructor for class org.kepler.actor.DecimalFormatConverter
Construct a DecimalFormatConverter with the given container and name.
decimation - Variable in class ptolemy.domains.sdf.lib.FIR
The decimation ratio of the filter.
decimationPhase - Variable in class ptolemy.domains.sdf.lib.FIR
The decimation phase of the filter.
declarations - Variable in class org.mlc.swing.layout.ComponentDef
 
declaredAttributes(String) - Method in class com.microstar.xml.XmlParser
Get the declared attributes for an element type.
declareDelayDependency() - Method in class ptolemy.actor.AtomicActor
Set the dependency between all output ports and all input ports of this actor.
declareDelayDependency() - Method in class ptolemy.actor.lib.MicrostepDelay
Declare that the output does not depend on the input in a firing.
declareDelayDependency() - Method in class ptolemy.actor.lib.ResettableTimer
Declare that the output does not immediately depend on the input.
declareDelayDependency() - Method in class ptolemy.actor.lib.TimeDelay
Declare that the output does not depend on the input in a firing.
declareDelayDependency(IOPort, IOPort, double, int) - Method in interface ptolemy.actor.util.CausalityInterface
Set the dependency that the specified output port has on the specified input port to represent a time delay with the specified value and superdense time index.
declareDelayDependency(IOPort, IOPort, double, int) - Method in class ptolemy.actor.util.DefaultCausalityInterface
Set the dependency that the specified output port has on the specified input port to represent a time delay with the specified value and superdense time index.
declareDelayDependency() - Method in class ptolemy.domains.continuous.lib.ContinuousTimeDelay
Declare that the output does not depend on the input in a firing.
declareDelayDependency() - Method in class ptolemy.domains.continuous.lib.LevelCrossingDetector
Declare that the output does not depend on the input in a firing.
declareDelayDependency() - Method in class ptolemy.domains.de.lib.Queue
Declare that the output does not depend on the input in a firing.
declareDelayDependency() - Method in class ptolemy.domains.de.lib.Register
Declare that the output does not depend on the input in a firing.
declareDelayDependency() - Method in class ptolemy.domains.de.lib.Server
Declare that the output does not depend on the input, serviceTime, and priority, in a firing.
declareDelayDependency() - Method in class ptolemy.domains.de.lib.TimedDelay
Deprecated.
Declare that the output does not depend on the input in a firing.
declareDelayDependency() - Method in class ptolemy.domains.de.lib.Timer
Deprecated.
Declare that the output does not depend on the input in a firing.
declareDelayDependency() - Method in class ptolemy.domains.de.lib.VariableDelay
Deprecated.
Declare that the output does not depend on the input and delay in a firing.
declaredElements() - Method in class com.microstar.xml.XmlParser
Get the declared elements for an XML document.
declaredEntities() - Method in class com.microstar.xml.XmlParser
Get declared entities.
declaredNotations() - Method in class com.microstar.xml.XmlParser
Get declared notations.
declareRateDependency() - Method in class ptolemy.domains.sdf.kernel.BaseSDFScheduler
Declare the rate dependency on any external ports of the model.
declareRateDependency() - Method in class ptolemy.domains.sdf.kernel.SDFScheduler
Declare the rate dependency on any external ports of the model.
decodeSpecs(String) - Static method in class com.jgoodies.forms.layout.ColumnSpec
Parses and splits encoded column specifications and returns an array of ColumnSpec objects.
decodeSpecs(String) - Static method in class com.jgoodies.forms.layout.RowSpec
Parses and splits encoded row specifications and returns an array of RowSpec objects.
decodeToFile(String) - Static method in class org.kepler.reporting.rio.util.ImageUtil
Wrapper method for decoding Base64 character encoded binary data used for serializing graphics in XML uses the iharder.sourceforge.net utility (public domain!)
decoratedObjects() - Method in class ptolemy.data.expr.ConstraintMonitor
Return a list of the entities deeply contained by the container of this resource scheduler.
decoratedObjects() - Method in interface ptolemy.kernel.util.Decorator
Return a list of the objects that this decorator decorates.
DECORATIONS - Static variable in class ptolemy.vergil.basic.layout.kieler.Parameters
Layout option that determines whether decoration nodes are included in layout.
Decorator - Interface in ptolemy.kernel.util
A decorator is a class that decorates other instances of NamedObj with extra attributes that are specific to both the decorator and the NamedObj.
DecoratorAttributes - Class in ptolemy.kernel.util
A container for attributes created by a decorator.
DecoratorAttributes(NamedObj, Decorator) - Constructor for class ptolemy.kernel.util.DecoratorAttributes
Construct a DecoratorAttributes instance to contain the decorator parameter for the specified container provided by the specified decorator.
DecoratorAttributes(NamedObj, String) - Constructor for class ptolemy.kernel.util.DecoratorAttributes
Construct a DecoratorAttributes instance with the given name and container.
decoratorHighlightColorName - Static variable in interface ptolemy.actor.CommunicationAspect
The parameter name of the decorator highlight color.
decoratorName - Variable in class ptolemy.kernel.util.DecoratorAttributes
The name of the decorator relative to the top-level of the model, to be stored in a MoML file to re-establish the connection with a decorator after saving and re-parsing the file.
decorators() - Method in class ptolemy.kernel.util.NamedObj
Return the set of decorators that decorate this object.
DECQEventQueue - Class in ptolemy.domains.de.kernel
A calendar queue implementation of the DE event queue.
DECQEventQueue() - Constructor for class ptolemy.domains.de.kernel.DECQEventQueue
Construct an empty event queue.
DECQEventQueue(int, int, boolean) - Constructor for class ptolemy.domains.de.kernel.DECQEventQueue
Construct an empty event queue with the specified parameters.
decrement - Variable in class ptolemy.actor.lib.Counter
The decrement port.
decrement - Variable in class ptolemy.component.test.Counter
The decrement port.
DEDirector - Class in ptolemy.domains.de.kernel
This director implements the discrete-event (DE) model of computation (MoC).
DEDirector() - Constructor for class ptolemy.domains.de.kernel.DEDirector
Construct a director in the default workspace with an empty string as its name.
DEDirector(Workspace) - Constructor for class ptolemy.domains.de.kernel.DEDirector
Construct a director in the workspace with an empty name.
DEDirector(CompositeEntity, String) - Constructor for class ptolemy.domains.de.kernel.DEDirector
Construct a director in the given container with the given name.
DEEP - Static variable in class ptolemy.kernel.util.NamedObj
Indicate that the description(int) method should include the contained objects (if any) that the contained objects have.
deepCompositeEntityList() - Method in class ptolemy.kernel.CompositeEntity
Return a list that consists of all the transparent and opaque composite entities in a model.
deepConnectedInPortList() - Method in class ptolemy.actor.IOPort
Return a list of input ports connected to this port on the outside.
deepConnectedInPorts() - Method in class ptolemy.actor.IOPort
Deprecated.
Use deepConnectedInPortList() instead.
deepConnectedOutPortList() - Method in class ptolemy.actor.IOPort
Return a list of output ports connected to this port on the outside.
deepConnectedOutPorts() - Method in class ptolemy.actor.IOPort
Deprecated.
Use deepConnectedInPortList() instead.
deepConnectedPortList() - Method in class ptolemy.kernel.ComponentPort
Deeply list the ports connected to this port on the outside.
deepConnectedPorts() - Method in class ptolemy.kernel.ComponentPort
Deprecated.
Use deepConnectedPortList() instead.
deepContains(NamedObj) - Method in class ptolemy.actor.LazyTypedCompositeActor
Return true if this object contains the specified object, directly or indirectly.
deepContains(NamedObj) - Method in class ptolemy.kernel.util.NamedObj
Return true if this object contains the specified object, directly or indirectly.
deepContains(NamedObj) - Method in class ptolemy.moml.EntityLibrary
Return true if this object contains the specified object, directly or indirectly.
deepEntityList() - Method in class org.kepler.ddp.actor.pattern.SingleInputPatternActor
List the opaque entities that are directly or indirectly contained by this entity.
deepEntityList() - Method in class ptolemy.actor.LazyTypedCompositeActor
List the opaque entities that are directly or indirectly contained by this entity.
deepEntityList() - Method in class ptolemy.kernel.CompositeEntity
List the opaque entities that are directly or indirectly contained by this entity.
deepEntityList() - Method in class ptolemy.moml.EntityLibrary
List the opaque entities that are directly or indirectly contained by this entity.
deepGetEntities() - Method in class ptolemy.kernel.CompositeEntity
Deprecated.
Use deepEntityList() instead.
deepGetReceivers() - Method in class ptolemy.actor.IOPort
If the port is an input, return the receivers deeply linked on the inside.
deepInsidePortList() - Method in class ptolemy.kernel.ComponentPort
Deeply list the ports connected on the inside.
deepInsidePorts() - Method in class ptolemy.kernel.ComponentPort
Deprecated.
Use deepInsidePortList() instead.
deepLinkedPortList() - Method in class ptolemy.kernel.ComponentRelation
Deeply list the ports linked to this relation.
deepLinkedPorts() - Method in class ptolemy.kernel.ComponentRelation
Deprecated.
Use deepLinkedPortList() instead.
deepNamedObjList() - Method in class ptolemy.kernel.CompositeEntity
List the NamedObjs that are directly or indirectly contained by this entity.
deepOpaqueEntityList() - Method in class ptolemy.actor.LazyTypedCompositeActor
List the opaque entities that are directly or indirectly contained by this entity.
deepOpaqueEntityList() - Method in class ptolemy.kernel.CompositeEntity
List the opaque entities that are directly or indirectly contained by this entity.
deepReceivers(IOPort) - Method in class ptolemy.actor.IORelation
Return the receivers of all input ports linked to this relation, directly or indirectly through a relation group, except those in the port given as an argument.
deepRelationSet() - Method in class ptolemy.actor.LazyTypedCompositeActor
Return a set with the relations that are directly or indirectly contained by this entity.
deepRelationSet() - Method in class ptolemy.kernel.CompositeEntity
Return a set with the relations that are directly or indirectly contained by this entity.
DEEvent - Class in ptolemy.domains.de.kernel
This class defines the structure of events in the DE domain.
DEEvent(Actor, Time, int, int) - Constructor for class ptolemy.domains.de.kernel.DEEvent
Construct a pure event with the specified destination actor, timestamp, microstep, and depth.
DEEvent(IOPort, Time, int, int) - Constructor for class ptolemy.domains.de.kernel.DEEvent
Construct a trigger event with the specified destination IO port, timestamp, microstep, and depth.
DEEventQueue - Interface in ptolemy.domains.de.kernel
This interface defines an event queue used by DE directors to sort and manage DE events.
DEF_ASPECT_RATIO - Static variable in class ptolemy.vergil.basic.layout.AbstractLayoutConfiguration
Default value for aspectRatio (non-logarithmic).
DEF_DECORATIONS - Static variable in class ptolemy.vergil.basic.layout.AbstractLayoutConfiguration
Default value for includeDecorations.
DEF_DIRECTION - Static variable in class ptolemy.vergil.basic.layout.ModalLayoutConfiguration
Default direction.
DEF_INTERACTION_MODE - Static variable in class ptolemy.vergil.basic.layout.AbstractLayoutConfiguration
Default value for interaction mode.
DEF_MINIMIZE_BENDS - Static variable in class ptolemy.vergil.basic.layout.ActorLayoutConfiguration
Default value for minimizeBends.
DEF_OLD_ALGORITHM - Static variable in class ptolemy.vergil.basic.layout.AbstractLayoutConfiguration
Default value for useOldAlgorithm.
DEF_SPACING - Static variable in class ptolemy.vergil.basic.layout.AbstractLayoutConfiguration
Default value for spacing.
DEF_USE_SPLINES - Static variable in class ptolemy.vergil.basic.layout.ModalLayoutConfiguration
Default value for useSplines.
DEFAULT - Static variable in class com.jgoodies.forms.layout.CellConstraints
Use the column's or row's default alignment.
DEFAULT - Static variable in class com.jgoodies.forms.layout.ColumnSpec
Unless overridden the default alignment for a column is FILL.
DEFAULT - Static variable in class com.jgoodies.forms.layout.RowSpec
Unless overridden the default alignment for a row is CENTER.
DEFAULT - Static variable in class com.jgoodies.forms.layout.Sizes
Use the maximum of all component sizes as column or row size; measures preferred sizes when asked for the preferred size and minimum sizes when asked for the minimum size.
DEFAULT - Static variable in class org.kepler.workflowrunmanager.WRMDefaults
 
DEFAULT - Static variable in class org.mlc.swing.layout.LayoutConstraintsManager
 
Default - Class in ptolemy.actor.lib
A Synchronous default operator.
Default(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Default
Construct an actor in the specified container with the specified name.
DEFAULT - Static variable in interface ptolemy.data.expr.MatrixParserConstants
Lexical state.
DEFAULT - Static variable in interface ptolemy.data.expr.PtParserConstants
Lexical state.
DEFAULT - Static variable in interface ptolemy.moml.unit.UParserConstants
Lexical state.
DEFAULT_CAPACITY - Static variable in class ptolemy.domains.sdf.kernel.ArrayFIFOQueue
The default capacity of the queue.
DEFAULT_COLSPEC - Static variable in class com.jgoodies.forms.factories.FormFactory
An unmodifyable ColumnSpec that determines its preferred width by computing the maximum of all column component preferred widths and its minimum width by computing all column component minimum widths.
DEFAULT_DRIVER_MEMORY - Static variable in class org.kepler.spark.actor.SparkConnection
The default amount of memory for the Spark driver.
DEFAULT_ENTRY_HEIGHT - Static variable in class ptolemy.gui.Query
The default height of entries created with addText().
DEFAULT_ENTRY_WIDTH - Static variable in class ptolemy.gui.Query
The default width of entries created with addLine().
DEFAULT_GROW - Static variable in class com.jgoodies.forms.layout.FormSpec
The default resize weight.
DEFAULT_HISTORY_CAPACITY - Static variable in class ptolemy.domains.sdf.kernel.ArrayFIFOQueue
The default capacity of the history queue.
DEFAULT_HOST - Static variable in class org.kepler.gis.actor.pylaski.PylaskiUtilities
The host URL of the REST API - all requests are made to this URL
DEFAULT_INPUT_DIR_NAME - Static variable in class org.kepler.ddp.actor.ExecutionChoice
The name of the default input directory.
DEFAULT_INPUT_FILE_NAME - Static variable in class org.kepler.ddp.actor.ExecutionChoice
The name of the default input file.
DEFAULT_INTTOKEN - Static variable in class org.kepler.ddp.director.DDPDirector
The value used to signify the default degree of parallelism for the degreeOfParallelism parameter.
DEFAULT_MASTER_PORT - Static variable in class org.kepler.spark.actor.SparkConnection
Default port for the master.
DEFAULT_NAME - Static variable in class org.kepler.ddp.director.DDPDirector
The name of the DEFAULT degree of parallelism parameter.
DEFAULT_NUM_LOCAL_WORKERS - Static variable in class org.kepler.spark.actor.SparkConnection
The default number of local workers.
DEFAULT_OUTPUT_DIR_NAME - Static variable in class org.kepler.ddp.actor.ExecutionChoice
The name of the default output directory.
DEFAULT_OUTPUT_FILE_NAME - Static variable in class org.kepler.ddp.actor.ExecutionChoice
The name of the default output file.
DEFAULT_PLOT_ITEM_COLOR - Static variable in class org.kepler.plotting.PlottingConstants
 
DEFAULT_PLOT_ITEM_SHAPE - Static variable in class org.kepler.plotting.PlottingConstants
 
DEFAULT_QUERY_WIDTH - Static variable in class ptolemy.actor.gui.EditorPaneFactory
Default width for a query.
DEFAULT_REC_TYPE_IGNORE - Static variable in class org.kepler.provenance.ProvenanceRecorder
String used when disabling provenance recording
DEFAULT_ROWSPEC - Static variable in class com.jgoodies.forms.factories.FormFactory
An unmodifyable RowSpec that determines its preferred height by computing the maximum of all column component preferred heights and its minimum height by computing all column component minimum heights.
DEFAULT_TEMPLATE_NAME - Static variable in class org.kepler.ddp.actor.ExecutionChoice
The name of the default template.
DEFAULT_WEBVIEW_SECURE_SERVER_PORT - Static variable in class org.kepler.webview.server.WebViewConfiguration
The default secure sever port.
DEFAULT_WEBVIEW_SERVER_INSTANCES - Static variable in class org.kepler.webview.server.WebViewConfiguration
The default number of server instances.
DEFAULT_WEBVIEW_SERVER_PORT - Static variable in class org.kepler.webview.server.WebViewConfiguration
The default server port.
DEFAULT_WEBVIEW_SERVER_ROOT_DIR - Static variable in class org.kepler.webview.server.WebViewConfiguration
The default root directory.
DEFAULT_WORKFLOW_RUNS_DIR - Static variable in class org.kepler.reporting.ReportingListener
 
DefaultCausalityInterface - Class in ptolemy.actor.util
This class provides causality interfaces for actor networks as described in the paper "Causality Interfaces for Actor Networks" by Ye Zhou and Edward A.
DefaultCausalityInterface(Actor, Dependency) - Constructor for class ptolemy.actor.util.DefaultCausalityInterface
Construct a causality interface for the specified actor.
DefaultComponentBuilder - Class in org.mlc.swing.layout
This is meant to be subclassed when you want to create a ComponentBuilder that has simplistic behavior.
DefaultComponentBuilder(Class) - Constructor for class org.mlc.swing.layout.DefaultComponentBuilder
Creates a new instance of DefaultComponentFactory
DefaultComponentBuilder(Class, String[]) - Constructor for class org.mlc.swing.layout.DefaultComponentBuilder
Creates a new instance of DefaultComponentFactory
DefaultComponentFactory - Class in com.jgoodies.forms.factories
A singleton implementation of the ComponentFactory interface that creates UI components as required by the PanelBuilder.
defaultDependency() - Method in class ptolemy.actor.Director
Return a default dependency to use between input ports and output ports.
defaultDependency() - Method in class ptolemy.domains.modal.kernel.FSMDirector
Return a default dependency to use between input input ports and output ports.
defaultForkScript - Variable in class org.kepler.actor.job.GenericJobLauncher
Boolean flag to indicate if the default fork script should be staged.
defaultForkScript - Variable in class org.kepler.actor.job.GenericJobReconnect
Boolean flag to indicate if the default fork script should be staged.
DefaultFormBuilder - Class in com.jgoodies.forms.builder
Provides a means to build form-oriented panels quickly and consistently using the FormLayout.
DefaultFormBuilder(FormLayout) - Constructor for class com.jgoodies.forms.builder.DefaultFormBuilder
Constructs an instance of DefaultFormBuilder for the given layout.
DefaultFormBuilder(FormLayout, JPanel) - Constructor for class com.jgoodies.forms.builder.DefaultFormBuilder
Constructs an instance of DefaultFormBuilder for the given panel and layout.
DefaultFormBuilder(FormLayout, ResourceBundle) - Constructor for class com.jgoodies.forms.builder.DefaultFormBuilder
Constructs an instance of DefaultFormBuilder for the given layout and resource bundle.
DefaultFormBuilder(FormLayout, ResourceBundle, JPanel) - Constructor for class com.jgoodies.forms.builder.DefaultFormBuilder
Constructs an instance of DefaultFormBuilder for the given panel, layout and resource bundle.
DefaultFormBuilder(JPanel, FormLayout) - Constructor for class com.jgoodies.forms.builder.DefaultFormBuilder
DefaultFormBuilder(JPanel, FormLayout, ResourceBundle) - Constructor for class com.jgoodies.forms.builder.DefaultFormBuilder
DEFAULTFORSCHEMA - Static variable in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource
 
DEFAULTFORSQL - Static variable in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource
 
DefaultIconLink - Class in ptolemy.vergil.basic.export.web
A parameter specifying default hyperlink to associate with icons in model.
DefaultIconLink(NamedObj, String) - Constructor for class ptolemy.vergil.basic.export.web.DefaultIconLink
Create an instance of this parameter.
DefaultIconScript - Class in ptolemy.vergil.basic.export.web
A parameter specifying default JavaScript actions to associate with icons in model.
DefaultIconScript(NamedObj, String) - Constructor for class ptolemy.vergil.basic.export.web.DefaultIconScript
Create an instance of this parameter.
DefaultModelElementClassProvider - Class in org.ptolemy.classloading.osgi
A simple provider that gets a list of classes to be provided in its constructor.
DefaultModelElementClassProvider(Class<? extends NamedObj>...) - Constructor for class org.ptolemy.classloading.osgi.DefaultModelElementClassProvider
Create a provider that does not care about class versions, i.e. it will only check on class names to check if it can provide a requested class.
DefaultModelElementClassProvider(VersionSpecification, Class<? extends NamedObj>...) - Constructor for class org.ptolemy.classloading.osgi.DefaultModelElementClassProvider
Create a provider that cares about class versions, i.e. it will check on class names and on the requested version to check if it can provide a requested class.
defaultOntologyName - Static variable in class org.kepler.sms.Constants
 
DefaultQuery - Class in org.kepler.provenance
A default implementation of Queryable.
DefaultQuery() - Constructor for class org.kepler.provenance.DefaultQuery
 
DEFAULTSEARCHSTRING - Variable in class org.kepler.workflowrunmanager.WRMDefaults
 
DEFAULTSELECTIONSTATUS - Static variable in interface org.ecoinformatics.seek.ecogrid.SelectableObjectInterface
 
defaultSleepTime - Variable in class ptolemy.actor.lib.VariableSleep
The sleepTime amount, in milliseconds This parameter must contain a LongToken.
defaultTimezone - Variable in class org.kepler.date.CreateDate
The time zone to use when inputFormat is specified, but no time zone is found in the format (specified with 'z' or 'Z').
DefaultTitle - Class in ptolemy.vergil.basic.export.web
A parameter specifying default title to associate with a model and with components in the model.
DefaultTitle(NamedObj, String) - Constructor for class ptolemy.vergil.basic.export.web.DefaultTitle
Create an instance of this parameter.
defaultTransition - Variable in class ptolemy.domains.modal.kernel.Transition
Indicator that this transition is a default transition.
DefaultUnitConverter - Class in com.jgoodies.forms.util
This is the default implementation of the UnitConverter interface.
DEFAULTVALUE - Static variable in class org.kepler.objectmanager.data.text.TextComplexFormatDataReader
 
defaultValue - Variable in class ptolemy.actor.IOPort
The default value of the port.
defaultValue - Variable in class ptolemy.actor.lib.hoc.MobileModel
The default output token when there is no inside model defined.
defaultValue - Variable in class ptolemy.domains.continuous.lib.ZeroOrderHold
Default output before any input has received.
DefaultViewPane - Class in org.kepler.gui
A ViewPane consisting of 4 ViewPaneLocations.
DefaultViewPane() - Constructor for class org.kepler.gui.DefaultViewPane
Constructor.
DefaultViewPane.Factory - Class in org.kepler.gui
A factory that creates the library panel for the editors.
DEFAUTTOPROW - Static variable in class org.ecoinformatics.seek.ecogrid.CheckBoxTableCellRenderer
 
deferIfNecessary(Runnable) - Static method in class ptolemy.gui.Top
If this method is called in the AWT event dispatch thread, then simply execute the specified action.
deferIfNecessary(Runnable) - Method in class ptolemy.plot.PlotBox
If this method is called in the event thread, then simply execute the specified action.
deferIfNecessary(Runnable) - Method in interface ptolemy.plot.PlotBoxInterface
If this method is called in the event thread, then simply execute the specified action.
defineAttribute(WebAttribute, boolean) - Method in class ptolemy.vergil.basic.export.html.ExportHTMLAction
Define an attribute to be included in the HTML area element corresponding to the region of the image map covered by the specified object.
defineAttribute(WebAttribute, boolean) - Method in interface ptolemy.vergil.basic.export.web.WebExporter
Add the given web content as a new attribute.
defineElement(WebElement, boolean) - Method in class ptolemy.vergil.basic.export.html.ExportHTMLAction
Define an element.
defineElement(WebElement, boolean) - Method in interface ptolemy.vergil.basic.export.web.WebExporter
Add the given web content as a new element to the specified position.
definition - Variable in class org.kepler.objectmanager.data.DataObjectDescription
 
degreeOfParallelism - Variable in class org.kepler.ddp.actor.pattern.AtomicPatternActor
The number of parallel instances to execute.
degreeOfParallelism - Variable in class org.kepler.ddp.actor.pattern.SingleInputPatternActor
The number of parallel instances to execute.
degreeOfParallelism - Variable in class org.kepler.ddp.director.DDPDirector
The default degree of parallelism for ddp pattern actors.
dehexchar(char) - Static method in class org.json.JSONTokener
Get the hex value of a character (base16).
delay - Variable in class org.kepler.actor.io.SshDirectoryList_v1_1
Specifying whether the output listings should be delayed by one step.
delay - Variable in class ptolemy.actor.lib.comm.ViterbiDecoder
Integer defining the trace back depth of the viterbi decoder.
delay - Variable in class ptolemy.actor.lib.hoc.RealTimeComposite
Deprecated.
The maximum model-time delay between the input events and the output events.
delay - Variable in class ptolemy.actor.lib.hoc.ThreadedComposite
The model-time delay between the input events and the output events.
delay - Variable in class ptolemy.actor.lib.TimeDelay
The amount of delay.
delay - Variable in class ptolemy.domains.continuous.lib.ContinuousTimeDelay
The amount of delay.
delay - Variable in class ptolemy.domains.de.lib.TimedDelay
Deprecated.
The amount of delay.
delay - Variable in class ptolemy.domains.de.lib.VariableDelay
Deprecated.
The amount specifying delay.
delayDependency(double) - Method in class ptolemy.actor.Director
Return a boolean dependency representing a model-time delay of the specified amount.
delayed - Variable in class ptolemy.actor.lib.SetVariable
Parameter that determines when reconfiguration occurs.
delayExit - Static variable in class ptolemy.actor.gui.BrowserLauncher
Set to true if we copied a file out of a jar file so that the browser could display it.
delayIfNecessary(String) - Static method in class ptolemy.util.test.junit.AutoTests
If the fullPath is a hlacerti or accessor demo, then delay so that the system can stabilize.
DelayLine - Class in ptolemy.domains.sdf.lib
This actor reads tokens from its input port, and for each token read outputs an array that contains the current token as the first token, followed by some number of previously read tokens.
DelayLine(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.DelayLine
Construct an actor with the given container and name.
delayRecordingSpecification - Variable in class org.kepler.provenance.ProvenanceRecorder
If true, delay recording specification as long as possible.
DelayStart - Class in ptolemy.actor.lib
This actor, which has no ports, delays the execution of the model until a specified time by sleeping the thread that calls the initialize() method until the specified time.
DelayStart(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.DelayStart
Construct an actor with the given container and name.
DelayStreamToASpecificElement - Class in org.sdm.spa
Postpone a stream of files until a specific element is found and bring that element in front.
DelayStreamToASpecificElement(CompositeEntity, String) - Constructor for class org.sdm.spa.DelayStreamToASpecificElement
Construct an actor with the given container and name.
DeletableColorIconLabel - Class in org.kepler.tagging.gui
 
DeletableColorIconLabel(Object, boolean) - Constructor for class org.kepler.tagging.gui.DeletableColorIconLabel
Create an icon with the given text and color
DeletableColorIconLabel(Object, Color) - Constructor for class org.kepler.tagging.gui.DeletableColorIconLabel
 
DeletableColorIconLabel(Object, boolean, boolean) - Constructor for class org.kepler.tagging.gui.DeletableColorIconLabel
 
DeletableColorIconLabel(Object, Color, boolean) - Constructor for class org.kepler.tagging.gui.DeletableColorIconLabel
 
DeletableColorIconLabel(Object) - Constructor for class org.kepler.tagging.gui.DeletableColorIconLabel
Create an icon with the given text and default color
DeletableColorIconLabelEvent - Class in org.kepler.tagging.gui
Event created when an icon label is deleted or selected
DeletableColorIconLabelEvent(DeletableColorIconLabel) - Constructor for class org.kepler.tagging.gui.DeletableColorIconLabelEvent
Create an event
DeletableColorIconLabelListener - Interface in org.kepler.tagging.gui
Event listener for icon label deletion events
DELETE - Static variable in class org.ecoinformatics.seek.dataquery.DBTablesGenerator
 
delete() - Method in class org.ecoinformatics.seek.gis.java_gis.Grid
 
delete(String) - Method in class org.kepler.job.JobManager
delete a job from queue
delete(Statement) - Method in class org.kepler.objectmanager.library.LibItem
Delete this populated LibItem from the Library_Index table.
delete(String) - Method in interface org.kepler.plotting.DeletionListener
 
delete() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Delete the currently selected objects from this document.
DeleteArchiveAction - Class in org.kepler.gui.kar
This action deletes a kar file from the system.
DeleteArchiveAction(TableauFrame) - Constructor for class org.kepler.gui.kar.DeleteArchiveAction
Constructor
deleteColumn(String, String) - Method in class org.kepler.util.sql.DatabaseType
Delete a column from a table.
deleteDirectory(File) - Static method in class ptolemy.util.FileUtilities
Delete a directory.
deleteDirectory(String) - Static method in class ptolemy.util.FileUtilities
Delete a directory and all of its content.
deleteDirectoryOutput(URI, Configuration) - Static method in class org.kepler.spark.util.SparkUtilities
Delete an output directory.
deleteExecutions(List<KeplerLSID>) - Method in class org.kepler.provenance.sql.SQLRecordingV8
Delete executions given a list of execution LSIDs.
deleteFile(String, boolean, boolean) - Method in interface org.kepler.ssh.ExecInterface
Delete file or directory on the local/remote site It should be relative to the user's home dir in case of remote machines, or to the current dir in case of local machine, or an absolute path For safety, * and ?
deleteFile(String, boolean, boolean) - Method in class org.kepler.ssh.LocalExec
To be implemented.
deleteFile(String, boolean, boolean) - Method in class org.kepler.ssh.RemoteExec
Delete file or directory on the remote site with "rm -rf" command!
deleteFiles(String, boolean) - Method in class org.kepler.ssh.LocalDelete
 
deleteFilesOnExit - Variable in class ptolemy.vergil.basic.ExportParameters
If true, files generated will be deleted when the JVM terminates.
deleteFromQueue() - Method in class org.kepler.job.Job
Remove job from the queue (either running or waiting)
deleteInputsOnWrapup - Variable in class org.kepler.gis.actor.landscape.CreateLandscape
If true, delete input raster files when workflow stops execution.
DeleteItemButton - Class in org.kepler.reporting.gui
 
DeleteItemButton() - Constructor for class org.kepler.reporting.gui.DeleteItemButton
 
deleteItemFromLayout(Item) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
Removes an item from the Report Layout.
deleteJob(String) - Method in class org.geon.LidarJobDB
Delete a job entry
deleteKAR(File) - Method in class org.kepler.objectmanager.library.LibraryManager
Remove a KAR file from the Component Library and from the user's Disk.
deleteOutputOnWrapup - Variable in class org.kepler.gis.actor.landscape.CreateLandscape
If true, delete output raster files when workflow stops execution.
deletePanel(DragAndDropPanel, int) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
DeletePanel - deletes a panel when the 'delete panel' button is pressed.
deletePorts() - Method in class org.sdm.spa.MessageBasedWebService
Deprecated.
Deletes all the ports of this actor.
deleteRecord(String, String) - Method in class org.ecoinformatics.seek.dataquery.DBTableExistenceChecker
 
deleteRun(Integer) - Static method in class org.kepler.provenance.manager.ProvenanceManager
Delete a run.
deleteRunProperty(String) - Method in class org.kepler.util.RemoteStoreRunsTracker
Delete a run property from tracker file.
deleteRuns(List<KeplerLSID>) - Static method in class org.kepler.provenance.manager.ProvenanceManager
Delete runs.
deleteRuns(Recording, List<KeplerLSID>, boolean) - Method in class org.kepler.workflowrunmanager.WorkflowRunManager
Delete runs in provenance and from local list.
deleteRunsLocally(List<KeplerLSID>) - Method in class org.kepler.workflowrunmanager.WorkflowRunManager
Delete runs from local list, CacheManager, and ObjectManager, but not from provenance.
deleteServicesFile() - Method in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
 
deleteWorkflowsWithNoExecutions() - Method in class org.kepler.provenance.sql.SQLRecordingV8
Delete workflows from the database that have no executions.
DELETION - Static variable in class org.kepler.workflowrunmanager.WorkflowRunManagerEvent
 
DeletionListener - Interface in org.kepler.plotting
Created by IntelliJ IDEA.
delim - Variable in class org.surge.RecordToStrings
 
delim - Variable in class org.surge.StringsToRecord
 
DelimitedReader - Class in org.kepler.util
tokenizes a delimited file.
DelimitedReader(String, int, String, int, String, int, boolean) - Constructor for class org.kepler.util.DelimitedReader
constructor. reads the csv stream.
DelimitedReader(InputStream, int, String, int, String, int, boolean) - Constructor for class org.kepler.util.DelimitedReader
This constructor will read delimitered data from stream rather a string
DelimitedTextFileReader - Class in org.kepler.hadoop.io.input
A class that provides data segments from an input stream, where the data segments are delimited by parameter "KEPLER::parameter::Delimiter".
DelimitedTextFileReader(InputStream) - Constructor for class org.kepler.hadoop.io.input.DelimitedTextFileReader
Create a line reader that reads from the given stream using the default buffer-size (64k).
DelimitedTextFileReader(InputStream, int) - Constructor for class org.kepler.hadoop.io.input.DelimitedTextFileReader
Create a line reader that reads from the given stream using the given buffer-size.
DelimitedTextFileReader(InputStream, Configuration) - Constructor for class org.kepler.hadoop.io.input.DelimitedTextFileReader
Create a line reader that reads from the given stream using the io.file.buffer.size specified in the given Configuration.
DelimitedTextInputFormat - Class in org.kepler.hadoop.io.input
This class extend DelimitedTextInputFormat class to read text in each map function.
DelimitedTextInputFormat() - Constructor for class org.kepler.hadoop.io.input.DelimitedTextInputFormat
 
DelimitedTextRecordReader - Class in org.kepler.hadoop.io.input
This class treats keys as file paths and value as sequence.
DelimitedTextRecordReader() - Constructor for class org.kepler.hadoop.io.input.DelimitedTextRecordReader
 
delimiter - Variable in class org.camera.service.CAMERAURLProcessor
 
DELIMITER - Static variable in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreDataSource
 
delimiter - Variable in class org.kepler.actor.rest.RESTService
The REST service method to use, either GET or POST.
DELIMITER_POSITION - Static variable in class org.kepler.bio.stratosphere.input.FASTAInputFormat
The configuration key to set position of the record delimiter. its value is null, prefix or suffix.
DELIMITER_POSITION - Static variable in class org.kepler.bio.stratosphere.input.FASTAInputFormatBySize
The configuration key to set position of the record delimiter. its value is null, prefix or suffix.
DelimiterResolver - Class in org.ecoinformatics.seek.dataquery
This class will map delimter format in metadata (e.g eml documents) to the format in db (e.g, hsql).
DelimiterResolver() - Constructor for class org.ecoinformatics.seek.dataquery.DelimiterResolver
Constructor.
delta - Variable in class ptolemy.actor.lib.Quantizer
The spacing between quantization levels to use if the levels parameter is not given.
delx - Variable in class org.ecoinformatics.seek.gis.java_gis.Grid
 
dely - Variable in class org.ecoinformatics.seek.gis.java_gis.Grid
 
demos() - Method in class ptolemy.vergil.basic.export.test.junit.ExportModelJUnitTest
Return a two dimensional array of arrays of strings that name the model to be exported.
demos() - Method in class ptolemy.vergil.basic.export.test.junit.ExportModelJUnitTestBatch
Return a two dimensional array of arrays of strings that name the first 51 models to be exported.
demos(int, int) - Method in class ptolemy.vergil.basic.export.test.junit.ExportModelJUnitTestBatch
Return a two dimensional array of strings that name the models to to be exported.
demos() - Method in class ptolemy.vergil.basic.export.test.junit.ExportModelJUnitTestBatch1
Run demos 1 through 140.
demos() - Method in class ptolemy.vergil.basic.export.test.junit.ExportModelJUnitTestBatch2
Run demos 141 through 200.
demos() - Method in class ptolemy.vergil.basic.export.test.junit.ExportModelJUnitTestBatch3
Run demos 211 through 270.
demos() - Method in class ptolemy.vergil.basic.export.test.junit.ExportModelJUnitTestBatch4
Run demos 276 through 360.
demos() - Method in class ptolemy.vergil.basic.export.test.junit.ExportModelJUnitTestBatch5
Run demos 441 through 590.
demos() - Method in class ptolemy.vergil.basic.export.test.junit.ExportModelJUnitTestBatch6
Run demos 591 through 690.
demos() - Method in class ptolemy.vergil.basic.export.test.junit.ExportModelJUnitTestBatch7
Run demos 691 through 830
denominator - Variable in class ptolemy.actor.lib.IIR
This parameter represents the denominator coefficients as an array of a tokens.
denominator - Variable in class ptolemy.domains.continuous.lib.ContinuousTransferFunction
The coefficients of the denominator, containing an array of DoubleTokens.
DensityGridActor - Class in com.numericsolutions.geomodeltools
Density Grid Actor
DensityGridActor(CompositeEntity, String) - Constructor for class com.numericsolutions.geomodeltools.DensityGridActor
Constructor
DEP_SEPARATOR - Static variable in class org.kepler.kar.KARFile
Separator to be used for dependency lists.
Dependency - Interface in ptolemy.actor.util
This interface provides a dependency for causality interfaces as described in the paper "Causality Interfaces for Actor Networks" by Ye Zhou and Edward A.
DependencyAttribute - Class in org.kepler.moml
This implements a DependencyAttribute for moml properties.
DependencyAttribute() - Constructor for class org.kepler.moml.DependencyAttribute
Constructor
DependencyAttribute(NamedObj, String) - Constructor for class org.kepler.moml.DependencyAttribute
Constructor
DependencyAttribute(Workspace) - Constructor for class org.kepler.moml.DependencyAttribute
Constructor
DependencyController(GraphController) - Constructor for class ptolemy.vergil.basic.DependencyHighlighter.DependencyController
Create a DependencyController that is associated with a controller.
DependencyDeclaration - Class in ptolemy.actor.util
An instance of DependencyDeclaration is an attribute that declares variable dependence information of a parameter.
DependencyDeclaration(Variable, String) - Constructor for class ptolemy.actor.util.DependencyDeclaration
Construct an DependencyDeclaration attribute in the given container with the given name.
DependencyHighlighter - Class in ptolemy.vergil.basic
This is an attribute that produces a custom node controller that adds context menu commands to highlight dependents and prerequisites.
DependencyHighlighter(NamedObj, String) - Constructor for class ptolemy.vergil.basic.DependencyHighlighter
Construct a new attribute with the given container and name.
DependencyHighlighter.DependencyController - Class in ptolemy.vergil.basic
The controller that adds commands to the context menu.
DependencyResultsDialog - Class in ptolemy.vergil.basic
A non-modal dialog that displays the actor dependency analysis results as a list.
DependencyResultsDialog(DialogTableau, Frame, Entity, Configuration) - Constructor for class ptolemy.vergil.basic.DependencyResultsDialog
Construct a dialog for search results.
dependentJob - Variable in class org.kepler.actor.job.GenericJobLauncher
One or more jobs that must successfully complete before this job can run.
dependentPorts(IOPort) - Method in class ptolemy.actor.util.BreakCausalityInterface
Return a collection of the ports in this actor that depend on or are depended on by the specified port.
dependentPorts(IOPort) - Method in interface ptolemy.actor.util.CausalityInterface
Return a collection of the ports in this actor that depend on or are depended on by the specified port.
dependentPorts(IOPort) - Method in class ptolemy.actor.util.CausalityInterfaceForComposites
Return a collection of the ports in the associated actor that depend on or are depended on by the specified port.
dependentPorts(IOPort) - Method in class ptolemy.actor.util.DefaultCausalityInterface
Return a collection of the ports in this actor that depend on or are depended on by the specified port.
dependents - Variable in class ptolemy.actor.lib.GetCausalityInterface
Output port on which to put the description of the dependent ports.
dependents(Actor) - Static method in class ptolemy.actor.util.ActorDependencies
Return a Set of dependent (downstream) atomic actors that are connected to the target.
dependents(Actor, Class) - Static method in class ptolemy.actor.util.ActorDependencies
Return a Set of dependent (downstream) actors of a particular class that are connected to the target.
dependents(IOPort, Class) - Static method in class ptolemy.actor.util.ActorDependencies
Return a Set of dependent (downstream) actors of a particular class that are connected to a port.
dependsOn(KeplerLSID) - Method in class org.kepler.kar.KAREntry
 
deployInKubernetes() - Static method in class org.kepler.webview.server.WebViewConfiguration
 
depth() - Method in class ptolemy.data.type.ArrayType
Return the depth of an array type.
depth() - Method in class ptolemy.data.type.RecordType
Return the depth of a record type.
depth() - Method in class ptolemy.data.type.StructuredType
Return the depth of a structured type.
depth() - Method in class ptolemy.data.type.UnionType
Return the depth of a union type.
depth() - Method in class ptolemy.domains.de.kernel.DEEvent
Return the depth of this event.
depthInHierarchy() - Method in class ptolemy.kernel.util.NamedObj
Return the depth in the hierarchy of this object.
DEReceiver - Class in ptolemy.domains.de.kernel
An implementation of the ptolemy.actor.Receiver interface for the DE domain.
DEReceiver() - Constructor for class ptolemy.domains.de.kernel.DEReceiver
Construct an empty DEReceiver with no container.
DEReceiver(IOPort) - Constructor for class ptolemy.domains.de.kernel.DEReceiver
Construct an empty DEReceiver with the specified container.
deRegisterAdditionalListener(DropTargetListener) - Method in class ptolemy.vergil.basic.EditorDropTarget
Remove an additional listener.
Derivable - Interface in ptolemy.kernel.util
This interface is for objects that can be derived.
derivative - Variable in class ptolemy.domains.continuous.kernel.ContinuousIntegrator
The derivative port.
Derivative - Class in ptolemy.domains.continuous.lib
A crude approximation to a derivative in the continuous domain.
Derivative(CompositeEntity, String) - Constructor for class ptolemy.domains.continuous.lib.Derivative
Construct a derivative actor.
derivative - Variable in class ptolemy.domains.continuous.lib.Derivative
The derivative output port.
Derivative - Class in ptolemy.domains.de.lib
Output the discrete derivative of the input, y[n] = (x[n] - x[n-1])/dt, where dt is the time gap between input events.
Derivative(CompositeEntity, String) - Constructor for class ptolemy.domains.de.lib.Derivative
Construct an actor with the given container and name.
derivatives - Variable in class ptolemy.plot.PlotPoint
d^n y/dx^n for n > 0.
derivativeValue(DoubleToken, int) - Static method in class ptolemy.data.SmoothToken
Return the n-th derivative of the specified token.
derivativeValues() - Method in class ptolemy.data.SmoothToken
Return the derivatives of the token as a double[], or null if there are no derivatives.
DeScrambler - Class in ptolemy.actor.lib.comm
Descramble the input bit sequence using a feedback shift register.
DeScrambler(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.comm.DeScrambler
Construct an actor with the given container and name.
describeDepths() - Method in class ptolemy.actor.util.CausalityInterfaceForComposites
Return a string that describes the depths of actors and their ports.
describePriorities() - Method in class ptolemy.domains.de.kernel.DEDirector
Return a string that describes the depths of actors and their ports.
DESCRIPTION - Static variable in class org.ecoinformatics.seek.ecogrid.MetadataSpecificationInterface
 
description - Variable in class ptolemy.domains.modal.modal.RefinementExtender
A string description of the refinement class, which is shown in the dialog for the user to choose a refinement to add.
description() - Method in class ptolemy.graph.InequalitySolver
Return a description of this solver as a String.
description() - Method in interface ptolemy.kernel.util.Nameable
Return a description of the object.
description() - Method in class ptolemy.kernel.util.NamedObj
Return a full description of the object.
description(int) - Method in class ptolemy.kernel.util.NamedObj
Return a description of the object.
description() - Method in class ptolemy.kernel.util.Workspace
Return a full description of the workspace and everything in its directory.
description(int) - Method in class ptolemy.kernel.util.Workspace
Return a description of the workspace.
description - Variable in class ptolemy.vergil.basic.DocAttribute
The description.
descriptiveForm() - Method in class ptolemy.moml.unit.Unit
The expression of the Unit that is commonly used by humans.
descriptiveForm() - Method in class ptolemy.moml.unit.UnitConstraint
 
descriptiveForm() - Method in class ptolemy.moml.unit.UnitConstraints
 
descriptiveForm() - Method in class ptolemy.moml.unit.UnitExpr
The expression of the UnitExpr that is commonly used by humans.
descriptiveForm() - Method in interface ptolemy.moml.unit.UnitPresentation
This method generates the descriptive form.
descriptiveForm() - Method in class ptolemy.moml.unit.UnitTerm
Create a String that is understandable by a human.
descriptor() - Method in class ptolemy.graph.Edge
A one-word description of the type of this graph element.
descriptor() - Method in class ptolemy.graph.Element
A one-word description of the type of this graph element.
descriptor() - Method in class ptolemy.graph.Node
A one-word description of the type of this graph element.
deselectPanel() - Method in class org.kepler.reporting.gui.DragAndDropPanel
 
deselectSitesWithOverallFrequencyUnder(double) - Method in class org.sdm.spa.actors.piw.viz.SiteCollection
 
deselectSitesWithPerSequenceFrequencyUnder(double) - Method in class org.sdm.spa.actors.piw.viz.SiteCollection
 
deserializeConfiguration(byte[]) - Static method in class org.kepler.spark.stub.StubUtilities
 
DesignPatternGetMoMLAction - Class in ptolemy.actor
An action that generates the Moml for a group of states to be used as a design pattern.
DesignPatternGetMoMLAction() - Constructor for class ptolemy.actor.DesignPatternGetMoMLAction
 
DesignPatternIcon - Class in ptolemy.vergil.icon
The icon for groups representing design patterns.
DesignPatternIcon(NamedObj, String) - Constructor for class ptolemy.vergil.icon.DesignPatternIcon
Create a new icon with the given name in the given container.
destFileParam - Variable in class org.geon.FileCopy
Destination file name or URL.
destination - Variable in class org.sdm.spa.actors.transport.GenericFileCopier
destination machine information in user@host:port format.
destination - Variable in class org.srb.DataGridTransfer
Where to put the files on the destination drive.
destinationFile - Variable in class org.geon.FileCopy
Destination file.
destinationFile - Variable in class org.sdm.spa.actors.transport.GenericFileCopier
destination file/directory to which source should be copied.
destinationPosition - Variable in class ptolemy.actor.lib.ArrayExtract
The index into the output array at which to start copying.
DESTINATIONSERVERCOMBOBOX - Static variable in class org.kepler.workflowscheduler.gui.WorkflowSchedulerPanel
 
destinationState() - Method in class ptolemy.domains.modal.kernel.Transition
Return the destination state of this transition.
destroy() - Method in class ptolemy.actor.gui.PtolemyApplet
Cleanup after execution of the model.
destroy() - Method in class ptolemy.domains.modal.kernel.RelationList
Destroy the relation list by deleting all the contained elements.
destroy() - Method in class ptolemy.gui.test.GraphicalMessageHandlerApplet
Cleanup after execution of the model.
destroy() - Method in class ptolemy.plot.PlotApplet
Cleanup after execution of the model.
destroy() - Method in class ptolemy.plot.PlotBox
Destroy the plotter.
destroy() - Method in interface ptolemy.plot.PlotBoxInterface
Destroy the plotter.
destroy() - Method in class ptolemy.vergil.VergilApplet
Cleanup after execution of the model.
DetailPanel - Class in org.sdm.spa.actors.piw.viz
 
DetailPanel(SequenceCollection, SiteCollection, ActionListener) - Constructor for class org.sdm.spa.actors.piw.viz.DetailPanel
 
determinant(Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Return the determinant of a square matrix.
determinant(double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Return the determinant of a square matrix.
determinant(float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Return the determinant of a square matrix.
determineLibIndexType(KARCacheContent) - Method in class org.kepler.objectmanager.library.LibIndex
Determine the appropriate LibIndex type of the given KARCacheContent
determineSequenceLength(ScalarToken, ScalarToken, ScalarToken) - Static method in class ptolemy.data.MatrixToken
Count the number of tokens differing by the given increment that fit in a range between the given start token and the given end token.
DEThreadActor - Class in ptolemy.domains.de.kernel
A base class for threaded DE domain actors.
DEThreadActor(TypedCompositeActor, String) - Constructor for class ptolemy.domains.de.kernel.DEThreadActor
Constructor.
DETransformer - Class in ptolemy.domains.de.lib
This is an abstract base class for DE actors that transform an input stream into an output stream.
DETransformer(CompositeEntity, String) - Constructor for class ptolemy.domains.de.lib.DETransformer
Construct an actor with the given container and name.
dframe - Variable in class org.mlc.swing.layout.LayoutFrame
 
DFUtilities - Class in ptolemy.actor.util
This class factors code out of the SDF domain, for use in different schedulers, so that they can be implemented in a consistent fashion.
DFUtilities() - Constructor for class ptolemy.actor.util.DFUtilities
 
DFUtilities.NamedObjComparator - Class in ptolemy.actor.util
A comparator for named objects.
diag(Complex[]) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new matrix that is constructed by placing the elements of the input array on the diagonal of the square matrix, starting from the top left corner down to the bottom right corner.
diag(double[]) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new matrix that is constructed by placing the elements of the input array on the diagonal of the square matrix, starting from the top left corner down to the bottom right corner.
diag(float[]) - Static method in class ptolemy.math.FloatMatrixMath
Return a new matrix that is constructed by placing the elements of the input array on the diagonal of the square matrix, starting from the top left corner down to the bottom right corner.
diag(Fraction[]) - Static method in class ptolemy.math.FractionMatrixMath
Return a new matrix that is constructed by placing the elements of the input array on the diagonal of the square matrix, starting from the top left corner down to the bottom right corner.
diag(int[]) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new matrix that is constructed by placing the elements of the input array on the diagonal of the square matrix, starting from the top left corner down to the bottom right corner.
diag(long[]) - Static method in class ptolemy.math.LongMatrixMath
Return a new matrix that is constructed by placing the elements of the input array on the diagonal of the square matrix, starting from the top left corner down to the bottom right corner.
diagram - Variable in class org.geon.Diagrams
An SVG diagram.
diagramHeight - Static variable in class org.geon.TernaryDiagram
 
Diagrams - Class in org.geon
This is a domain specific actor for processing Rock naming SVG diagrams.
Diagrams(CompositeEntity, String) - Constructor for class org.geon.Diagrams
Construct an actor with the given container and name.
diagramsAndTransitions - Variable in class org.geon.DiagramTransitions
All the diagrams and transitions information.
diagramTransitions - Variable in class org.geon.Diagrams
All the diagrams and transitions information.
DiagramTransitions - Class in org.geon
This is a domain specific actor that holds all the information about rock naming diagrams and the transtions between them.
DiagramTransitions(CompositeEntity, String) - Constructor for class org.geon.DiagramTransitions
Construct an actor with the given container and name.
diagramWidth - Static variable in class org.geon.TernaryDiagram
 
dialog - Variable in class ptolemy.actor.lib.gui.InteractiveDialog.DialogTableau
The UserDialog.
DIALOG_BORDER - Static variable in class com.jgoodies.forms.factories.Borders
A standardized Border that describes the border around a dialog content that has no tabs.
DIALOG_UNITS_X - Static variable in class com.jgoodies.forms.layout.ConstantSize
 
DIALOG_UNITS_Y - Static variable in class com.jgoodies.forms.layout.ConstantSize
 
DialogAnnotationsTab - Class in org.kepler.gui
A JTabbedPane tab to be added to a TabbedDialog object.
DialogAnnotationsTab(NamedObj, String, TableauFrame) - Constructor for class org.kepler.gui.DialogAnnotationsTab
 
DialogFrame(InteractiveDialog.DialogTableau) - Constructor for class ptolemy.actor.lib.gui.InteractiveDialog.DialogFrame
Construct a frame to display the ExpressionShell window.
DialogGeneralTab - Class in org.kepler.gui
A JTabbedPane tab to be added to a TabbedDialog object.
DialogGeneralTab(NamedObj, String, TableauFrame) - Constructor for class org.kepler.gui.DialogGeneralTab
 
DialogParametersTab - Class in org.kepler.gui
A JTabbedPane tab to be added to a TabbedDialog object.
DialogParametersTab(NamedObj, String, TableauFrame) - Constructor for class org.kepler.gui.DialogParametersTab
 
DialogPortsTab - Class in org.kepler.gui
A JTabbedPane tab to be added to a TabbedDialog object.
DialogPortsTab(NamedObj, String, TableauFrame) - Constructor for class org.kepler.gui.DialogPortsTab
 
DialogTableau - Class in ptolemy.actor.gui
A tableau representing a Dialog in a toplevel window.
DialogTableau(Effigy, String) - Constructor for class ptolemy.actor.gui.DialogTableau
Construct a new tableau for the model represented by the given effigy.
DialogTableau(ExpressionShellEffigy, String) - Constructor for class ptolemy.actor.lib.gui.InteractiveDialog.DialogTableau
Construct a new tableau for the model represented by the given effigy.
DialogUnitsTab - Class in org.kepler.gui
A JTabbedPane tab to be added to a TabbedDialog object.
DialogUnitsTab(NamedObj, String, TableauFrame) - Constructor for class org.kepler.gui.DialogUnitsTab
 
dialogUnitXAsPixel(int, Component) - Static method in class com.jgoodies.forms.layout.Sizes
Converts horizontal dialog units and returns pixels.
dialogUnitXAsPixel(int, Component) - Method in class com.jgoodies.forms.util.AbstractUnitConverter
Converts horizontal dialog units and returns pixels.
dialogUnitXAsPixel(int, double) - Method in class com.jgoodies.forms.util.AbstractUnitConverter
Converts horizontal dialog units and returns pixels.
dialogUnitXAsPixel(int, Component) - Method in interface com.jgoodies.forms.util.UnitConverter
Converts horizontal dialog units and returns pixels.
dialogUnitYAsPixel(int, Component) - Static method in class com.jgoodies.forms.layout.Sizes
Converts vertical dialog units and returns pixels.
dialogUnitYAsPixel(int, Component) - Method in class com.jgoodies.forms.util.AbstractUnitConverter
Converts vertical dialog units and returns pixels.
dialogUnitYAsPixel(int, double) - Method in class com.jgoodies.forms.util.AbstractUnitConverter
Converts vertical dialog units and returns pixels.
dialogUnitYAsPixel(int, Component) - Method in interface com.jgoodies.forms.util.UnitConverter
Converts vertical dialog units and returns pixels.
Dictionary - Class in ptolemy.actor.lib
A store for key-value pairs.
Dictionary(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Dictionary
Construct an actor with the given container and name.
Diff - Class in ptolemy.util
Read two files and compute the diff.
Diff() - Constructor for class ptolemy.util.Diff
 
diff(String, String) - Static method in class ptolemy.util.Diff
Return the difference between two strings.
Difference - Class in org.kepler.gis.actor.calc
Subtract one geometry from one or more others.
Difference(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.calc.Difference
 
Differential - Class in ptolemy.actor.lib
Output the current input minus the previous input, or if there has been no previous input, the current input itself.
Differential(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Differential
Construct an actor with the given container and name.
DifferentialSystem - Class in ptolemy.domains.continuous.lib
A differential system in the Continuous domain.
DifferentialSystem(CompositeEntity, String) - Constructor for class ptolemy.domains.continuous.lib.DifferentialSystem
Construct the composite actor with a name and a container.
DifferentialSystem(Workspace) - Constructor for class ptolemy.domains.continuous.lib.DifferentialSystem
Construct a DifferentialSystem in the specified workspace with no container and an empty string as a name.
DIGIT - Static variable in interface ptolemy.data.expr.MatrixParserConstants
RegularExpression Id.
dimension - Variable in class ptolemy.domains.pn.demo.QR.StreamToMatrix
The dimension of the matrix.
dimensions - Variable in class org.kepler.data.netcdf.NetCDFWriter
A space-separated list of dimensions and their length, e.g., x[10] y[4].
dip - Variable in class ptolemy.actor.lib.ArrayPeakSearch
The amount that the signal must drop below a local maximum before a peak is detected.
dir - Variable in class org.kepler.actor.io.SshDirectoryList
The path to the directory to be read on the target machines.
dir - Variable in class org.kepler.actor.io.SshDirectoryList_v1_1
The path to the directory to be read on the target machines.
dir - Variable in class org.kepler.actor.job.JobGetDirectory
Working directory of the job that was assigned and created by the JobSubmitter when the job was submitted.
dir - Variable in class org.kepler.actor.ssh.DirectoryCreator
The path to the directory to be read on the target machines.
dir - Variable in class org.nees.CreateUniqueFile
The directory in which to create the file.
DirectedAcyclicGraph - Class in ptolemy.graph
A directed acyclic graph (DAG).
DirectedAcyclicGraph() - Constructor for class ptolemy.graph.DirectedAcyclicGraph
Construct an empty DAG.
DirectedAcyclicGraph(int) - Constructor for class ptolemy.graph.DirectedAcyclicGraph
Construct an empty DAG with enough storage allocated for the specified number of elements.
DirectedGraph - Class in ptolemy.graph
A directed graph.
DirectedGraph() - Constructor for class ptolemy.graph.DirectedGraph
Construct an empty directed graph.
DirectedGraph(int) - Constructor for class ptolemy.graph.DirectedGraph
Construct an empty directed graph with enough storage allocated for the specified number of nodes.
DirectedGraph(int, int) - Constructor for class ptolemy.graph.DirectedGraph
Construct an empty directed graph with enough storage allocated for the specified number of edges, and number of nodes.
direction - Variable in class org.geon.Scp
scp direction, from/to.
direction - Variable in class org.kepler.gis.actor.farsite.GenerateWindFile
The wind direction, specified in degrees clockwise from north.
direction - Variable in class ptolemy.domains.continuous.lib.LevelCrossingDetector
A parameter that can be used to limit the detected level crossings to rising or falling.
direction - Variable in class ptolemy.vergil.basic.layout.ModalLayoutConfiguration
Specifies the direction into which the "flow" of the layout points.
Director - Class in ptolemy.actor
A Director governs the execution within a CompositeActor.
Director() - Constructor for class ptolemy.actor.Director
Construct a director in the default workspace with an empty string as its name.
Director(CompositeEntity, String) - Constructor for class ptolemy.actor.Director
Construct a director in the given container with the given name.
Director(Workspace) - Constructor for class ptolemy.actor.Director
Construct a director in the workspace with an empty name.
director - Variable in class ptolemy.actor.lib.hoc.MobileModel
The inside Director for executing the inside model.
DIRECTOR_PARAMETERS - Static variable in class ptolemy.actor.gui.ModelPane
Indicator to include director parameters in the controls.
DIRECTOR_TARGET_TYPE - Static variable in class org.kepler.gui.AbstractDialogTab
 
directorClass - Variable in class ptolemy.domains.modal.modal.ModalModel
A director class name.
directory - Variable in class org.kepler.gis.actor.bbox.FindCoveringFile
The directory to search.
directory - Variable in class org.resurgence.actor.DirectoryMaker
The parameter, which is a string with the directory name.
directory - Variable in class org.resurgence.actor.FileArrayPrinter
The port or parameter, which is a string with the directory name.
directory - Variable in class org.resurgence.actor.FileCopier
The port or parameter, which is a string with the directory name.
directory - Variable in class org.sdm.spa.CommandLineExec
 
directory - Variable in class ptolemy.actor.lib.Exec
The directory in which to execute the command.
directory() - Method in class ptolemy.kernel.util.Workspace
Deprecated.
Use directoryList() instead.
DirectoryCreate - Class in org.sdm.spa.actors.io
Creates the directory specified by the input port if it doesn't exist plus parent directories.
DirectoryCreate(CompositeEntity, String) - Constructor for class org.sdm.spa.actors.io.DirectoryCreate
Create an instance of this actor.
DirectoryCreator - Class in org.kepler.actor.ssh
Actor for creating a local/remote directory.
DirectoryCreator(CompositeEntity, String) - Constructor for class org.kepler.actor.ssh.DirectoryCreator
Construct an actor with the given container and name.
directoryList() - Method in class ptolemy.kernel.util.Workspace
Return an unmodifiable list of the items in the directory, in the order in which they were added.
DirectoryListing - Class in org.kepler.io
Get the actual list of files in a directory and provide a difference from the previous listing.
DirectoryListing(File, String[]) - Constructor for class org.kepler.io.DirectoryListing
Constructor only for local directories.
DirectoryListing(String, String, String[]) - Constructor for class org.kepler.io.DirectoryListing
Constructor for remote or local directories.
DirectoryListing - Class in ptolemy.actor.lib.io
Given a URL or directory name, produce an array of file names in that directory that match an (optional) pattern.
DirectoryListing(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.io.DirectoryListing
Construct an actor with the given container and name.
DirectoryMaker - Class in org.resurgence.actor
This actor creates a new directory.
DirectoryMaker(CompositeEntity, String) - Constructor for class org.resurgence.actor.DirectoryMaker
Construct a DirectoryMaker with the given container and name.
directoryOrURL - Variable in class ptolemy.actor.lib.io.DirectoryListing
The directory name or URL from which to read.
directoryOrURLPort - Variable in class ptolemy.kernel.test.PortHasNoContainer
This port, from actor/lib/io/DirectoryListing.java, is ok because it ends in "Port"
directoryOrURLPort - Variable in class ptolemy.kernel.test.PortNameProblem
 
directoryToExportTo - Variable in class ptolemy.vergil.basic.export.web.WebExportParameters
The directory to export to.
directoryToExportTo - Variable in class ptolemy.vergil.basic.ExportParameters
The directory to export to.
dirtyAll() - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableOverviewTable
Makes sure the entire "panel" will be redrawn by marking the entire bounds "dirty"
dirtyAll() - Method in class org.ecoinformatics.seek.querybuilder.DBTableDesktopPane
Makes sure the entire "panel" will be redrawn by marking the entire bounds "dirty"
dirtyAll() - Method in class org.ecoinformatics.seek.querybuilder.DBTableList
Dirties the "this" list
dirtyAll() - Method in class org.ecoinformatics.seek.querybuilder.DBWhereList
Dirties the "this" list
dirtyRoot() - Method in class org.ecoinformatics.seek.querybuilder.DBTableList
Dirties the Root (the TableDesktopPane)
dirtyRoot() - Method in class org.ecoinformatics.seek.querybuilder.DBWhereList
Dirties the Root (the TableDesktopPane)
DISABLE - Static variable in interface org.ecoinformatics.seek.ecogrid.SelectableObjectInterface
 
disable_tracing() - Method in class ptolemy.data.expr.MatrixParser
Disable tracing.
disable_tracing() - Method in class ptolemy.data.expr.PtParser
Disable tracing.
disable_tracing() - Method in class ptolemy.moml.unit.UParser
Disable tracing.
disableAction(boolean) - Method in class org.kepler.gui.ComponentLibraryTab.OntSelectActionHandler
 
disableCaching() - Method in class ptolemy.graph.analysis.strategy.CachedStrategy
Disable caching.
DISABLED - Static variable in class org.kepler.workflowscheduler.gui.ScheduleTableModel
 
DisabledGlassPane - Class in org.kepler.provenance.gui
 
DisabledGlassPane() - Constructor for class org.kepler.provenance.gui.DisabledGlassPane
 
disableSchedule(Schedule) - Method in class org.kepler.workflowscheduler.gui.ExistingSchedulePanel
Handle the event that a schedule will be disabled Note: this method will handle the table which displays existing schedules.
disableSchedule(Schedule) - Method in class org.kepler.workflowscheduler.gui.ScheduleChangeController
Handle the event that a schedule will be disabled
disableSchedule(Schedule) - Method in interface org.kepler.workflowscheduler.gui.ScheduleChangeListenerInterface
Handle the event that a schedule will be disabled
disableSchedule(Schedule) - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerDialog
Handle the event that a schedule will be disabled
disableSchedule(Schedule) - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerParentPanel
Method for ScheduleChangeListener.
DisableScheduleAction - Class in org.kepler.workflowscheduler.gui
Represents an action to disable a schedule in a scheduler server.
DisableScheduleAction(TableauFrame, WorkflowSchedulerParentPanel, ScheduleChangeController) - Constructor for class org.kepler.workflowscheduler.gui.DisableScheduleAction
Constructor
disableTreeSelection() - Method in class org.kepler.workflowscheduler.gui.ScheduleChangeController
Disable selecting a node from tree
disableTypeResolution(boolean) - Method in class ptolemy.domains.ddf.kernel.DDFDirector
Set the flag indicating whether type resolution is disabled or not.
Discard - Class in ptolemy.actor.lib
A simple sink actor that consumes and discards input tokens.
Discard(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Discard
Construct an actor with an input multiport.
discard - Variable in class ptolemy.domains.continuous.lib.ContinuousMerge
Indicator of whether to discard present inputs on channel numbers higher than the first one.
DiscardDoubles - Class in ptolemy.moml.filter
A simple sink actor that consumes and discards double input tokens.
DiscardDoubles(CompositeEntity, String) - Constructor for class ptolemy.moml.filter.DiscardDoubles
Construct an actor with an input multiport with type double.
DiscardDoublesArray - Class in ptolemy.moml.filter
A simple sink actor that consumes and discards arrays of double input tokens.
DiscardDoublesArray(CompositeEntity, String) - Constructor for class ptolemy.moml.filter.DiscardDoublesArray
Construct an actor with an input multiport with type double.
discardEvents - Variable in class ptolemy.domains.de.lib.Merge
A flag to indicate whether the input events can be discarded.
DiscardGenerals - Class in ptolemy.moml.filter
A simple sink actor that consumes and discards input tokens of type General.
DiscardGenerals(CompositeEntity, String) - Constructor for class ptolemy.moml.filter.DiscardGenerals
Construct an actor with an input multiport with type general.
discardOthers - Variable in class org.sdm.spa.SyncOnTerminator
A flag to indicate whether non-terminator tokens should be passed on or discarded.
disconnect() - Method in class org.kepler.provenance.DefaultQuery
 
disconnect() - Method in class org.kepler.provenance.prov.ProvQuery
Disconnect from the underlying provenance store.
disconnect() - Method in class org.kepler.provenance.ProvenanceRecorder
Perform cleanup.
disconnect() - Method in interface org.kepler.provenance.Queryable
Disconnect from provenance store.
disconnect() - Method in class org.kepler.provenance.Recording
Stop recording.
disconnect() - Method in class org.kepler.provenance.sql.SQLQueryV8
Disconnect from provenance store.
disconnect() - Method in class org.kepler.provenance.sql.SQLRecording
Stop recording.
disconnect() - Method in class org.kepler.provenance.TextFileRecording
Stop recording.
disconnect() - Method in class org.kepler.util.sql.DatabaseType
Close a JDBC connection.
disconnect() - Method in class org.kepler.util.sql.HSQL
Close a JDBC connection.
disconnect() - Method in class org.kepler.workflowrunmanager.WorkflowRunManager
 
disconnectAll() - Static method in class org.kepler.provenance.ProvenanceRecorder
Perform cleanup for all ProvenanceRecorder instances.
disconnectEdge(Object, Object) - Method in class ptolemy.vergil.actor.ActorGraphModel
Disconnect an edge from its two endpoints and notify graph listeners with an EDGE_HEAD_CHANGED and an EDGE_TAIL_CHANGED event whose source is the given source.
disconnectEdge(Object, Object) - Method in class ptolemy.vergil.basic.AbstractBasicGraphModel
Disconnect an edge from its two endpoints and notify graph listeners with an EDGE_HEAD_CHANGED and an EDGE_TAIL_CHANGED event whose source is the given source.
disconnectEdge(Object, Object) - Method in class ptolemy.vergil.modal.FSMGraphModel
Disconnect an edge from its two endpoints and notify graph listeners with an EDGE_HEAD_CHANGED and an EDGE_TAIL_CHANGED event whose source is the given source.
disconnectGraphOnAbsentValue - Variable in class ptolemy.actor.lib.gui.TimedPlotter
When disconnectGraphOnAbsentValue is True there will be a gap in the graph each time a the actor is fired, but the value is absent for a certain channel.
DiscreteClock - Class in ptolemy.actor.lib
This actor produces a periodic signal, a sequence of events at regularly spaced intervals.
DiscreteClock(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.DiscreteClock
Construct an actor in the specified container with the specified name.
DiscreteClock - Class in ptolemy.domains.continuous.lib
Deprecated.
Use ptolemy.actor.lib.DiscreteClock instead.
DiscreteClock(CompositeEntity, String) - Constructor for class ptolemy.domains.continuous.lib.DiscreteClock
Deprecated.
Construct an actor in the specified container with the specified name.
DiscreteRandomSource - Class in ptolemy.actor.lib
An actor that produces tokens with a given probability mass function.
DiscreteRandomSource(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.DiscreteRandomSource
Construct an actor with the given container and name.
display(ArrayToken) - Method in class ptolemy.actor.gui.ArrayOfRecordsPane
Set the array to display in the table.
display(ArrayToken, ArrayToken) - Method in class ptolemy.actor.gui.ArrayOfRecordsPane
Set the array to display in the table.
display(MatrixToken) - Method in class ptolemy.actor.gui.MatrixPane
Set the matrix to display in the table.
Display - Class in ptolemy.actor.lib.gui
Display the values of the tokens arriving on the input channels in a text area on the screen.
Display(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.gui.Display
Construct an actor with an input multiport of type GENERAL.
display(String) - Method in interface ptolemy.actor.lib.gui.DisplayInterface
Append the string value of the token to the text area on the screen.
display(String) - Method in class ptolemy.actor.lib.gui.DisplayJavaSE
Append the string value of the token to the text area on the screen.
display(Token) - Method in interface ptolemy.actor.lib.image.ImageDisplayInterface
Display the specified token.
display(Token) - Method in class ptolemy.actor.lib.image.ImageDisplayJavaSE
Display the specified token.
display(ImageToken) - Method in class ptolemy.actor.lib.image.ImageTableau
Display the specified token.
display - Variable in class ptolemy.component.test.Leds
The increment port.
display(Token) - Method in class ptolemy.domains.sdf.lib.vq.ImageDisplayJavaSE
Display the specified token.
displayFileOrURL(String) - Method in class org.geon.BrowserDisplay.LaunchBrowser
 
displayGraphicsOutput - Variable in class org.ecoinformatics.seek.R.RExpression
If true, then display plot.
displayGraphicsOutput - Variable in class org.ecoinformatics.seek.R.RExpression2
If true, then display plot.
displayGraphicsOutput - Variable in class ptolemy.actor.lib.r.RExpression
If true, then display plot.
displayGraphicsOutput - Variable in class ptolemy.actor.lib.r.RExpression2
If true, then display plot.
displayHeight - Variable in class ptolemy.vergil.icon.AttributeValueIcon
The maximum number of lines to display.
displayImage() - Method in class ptolemy.media.Picture
Notify this picture that its image has been changed and that it is now OK to display the new image.
DisplayInterface - Interface in ptolemy.actor.lib.gui
Interface for implementing platform dependent parts of the display actor.
DisplayJavaSE - Class in ptolemy.actor.lib.gui
DisplayJavaSE is the implementation of the DisplayInterface that uses AWT and Swing classes.
DisplayJavaSE() - Constructor for class ptolemy.actor.lib.gui.DisplayJavaSE
 
DisplayObject - Class in org.cipres.kepler
A DisplayObject object stores an object and its name for display.
DisplayObject() - Constructor for class org.cipres.kepler.DisplayObject
 
DisplayObject(Object, String) - Constructor for class org.cipres.kepler.DisplayObject
Create a DisplayObject object with the object and its name.
displayParseTree(String) - Method in class ptolemy.data.expr.ASTPtRootNode
Override this method if you want to customize how the node dumps out its children.
displayParseTree(ASTPtRootNode) - Method in class ptolemy.data.expr.ParseTreeDumper
Print the contents of a parse tree.
displayParseTree(ASTPtRootNode) - Method in class ptolemy.data.expr.ParseTreeWriter
 
displayRedirectDir - Variable in class org.kepler.ddp.actor.pattern.SingleInputPatternActor
The directory where the display related actors in DDP pattern sub-workflows will save their outputs.
displayRedirectDir - Variable in class org.kepler.ddp.director.DDPDirector
The directory where the display related actors in DDP pattern sub-workflows will save their outputs.
displayText - Variable in class ptolemy.vergil.basic.export.web.WebContent
Parameter giving the text to display in the Ptolemy model.
displayWidth - Variable in class ptolemy.vergil.icon.AttributeValueIcon
The number of characters to display.
displayWidth - Variable in class ptolemy.vergil.icon.BoxedValuesIcon
The number of characters to display.
displayWidth - Variable in class ptolemy.vergil.icon.ValueIcon
The number of characters to display.
displayWidth - Variable in class ptolemy.vergil.kernel.attributes.AttributeValueAttribute
The number of characters to display.
DisplayWorkflowSizeStatisticsAction - Class in org.kepler.gui
An action to display size statistics for the workflow.
DisplayWorkflowSizeStatisticsAction(TableauFrame) - Constructor for class org.kepler.gui.DisplayWorkflowSizeStatisticsAction
 
dispose() - Method in class org.kepler.gui.component.SearchConfigurationFrame
 
dispose() - Method in class org.kepler.gui.frame.TabbedKeplerGraphFrame
Free resources when closing.
dispose() - Method in class org.kepler.gui.KeplerGraphFrame
Override the dispose method to unattach any listeners that may keep this model from getting garbage collected.
dispose(KeplerGraphFrame) - Method in interface org.kepler.gui.KeplerGraphFrameUpdater
clear when a frame is close.
dispose() - Method in class org.kepler.gui.PreferencesFrame
As the PreferenceFrame is disposed the onClose method of each preference tab is called.
dispose(KeplerGraphFrame) - Method in class org.kepler.module.cloudsharing.Initialize
 
dispose(KeplerGraphFrame) - Method in class org.kepler.module.gui.Initialize
 
dispose(KeplerGraphFrame) - Method in class org.kepler.module.provenance.Initialize
 
dispose(KeplerGraphFrame) - Method in class org.kepler.module.reporting.Initialize
 
dispose(KeplerGraphFrame) - Method in class org.kepler.module.workflowrunmanager.Initialize
 
dispose(KeplerGraphFrame) - Method in class org.kepler.reporting.gui.ReportViewerPanel
 
dispose() - Method in class org.kepler.sms.gui.SemanticTypeTable
Release the browser.
dispose() - Method in class org.kepler.tagging.gui.TagManagerUI
Dispose of the manager (requires access to the parent frame)
dispose(KeplerGraphFrame) - Static method in class org.kepler.tagging.TaggingContextManager
 
dispose() - Method in class org.kepler.workflowrunmanager.gui.DateCellEditor
 
dispose() - Method in class org.kepler.workflowrunmanager.gui.DurationCellEditor
 
dispose() - Method in class org.kepler.workflowrunmanager.gui.ExecIdCellEditor
 
dispose(KeplerGraphFrame) - Method in class org.kepler.workflowrunmanager.gui.WorkflowRunManagerPanel
 
dispose(WorkflowRunManagerEventListener) - Method in class org.kepler.workflowrunmanager.WorkflowRunManager
 
dispose(KeplerGraphFrame) - Method in class org.kepler.workflowrunmanager.WorkflowRunManagerManager
 
dispose() - Method in class ptolemy.actor.gui.PlotTableauFrame
Dispose of this frame.
dispose() - Method in class ptolemy.actor.gui.PtolemyFrame
Dispose of this frame.
dispose() - Method in class ptolemy.actor.gui.TableauFrame
Dispose of this frame.
dispose() - Method in class ptolemy.actor.gui.TextEditor
Dispose of this frame.
dispose() - Method in class ptolemy.gui.ComponentDialog
 
dispose() - Method in class ptolemy.gui.Top
Dispose of this frame.
dispose() - Method in class ptolemy.plot.EPSGraphics
 
dispose() - Method in class ptolemy.vergil.actor.ActorGraphFrame
Dispose of this frame.
dispose() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Dispose of this frame.
dispose() - Method in class ptolemy.vergil.basic.ExtendedGraphFrame
Dispose of this frame.
dispose() - Method in class ptolemy.vergil.basic.SearchResultsDialog
Override to clear highlights.
disposeSplash() - Static method in class org.kepler.gui.SplashWindow
Closes the splash window.
disposeSuper() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Invoke the dispose() method of the superclass, PtolemyFrame.
distance() - Method in interface ptolemy.graph.analysis.analyzer.SingleSourceLongestPathAnalyzer
Return the distance from the start node to all the other nodes in the graph.
distance() - Method in class ptolemy.graph.analysis.SingleSourceLongestPathAnalysis
Return the distance from the node "startNode" to all the other nodes in the graph.
distance() - Method in class ptolemy.graph.analysis.strategy.AllEdgeSingleSourceLongestPathStrategy
Return the distance from the start node to all the other nodes in the graph.
distortedSignal - Variable in class ptolemy.domains.sdf.lib.vq.PSNR
A distorted version of the input signal.
DISTRIBUTED_STRING - Static variable in class org.kepler.ddp.director.DDPDirector
String for serverType parameter for running DDP Engine in a distributed environment.
Distributor - Class in ptolemy.actor.lib
A polymorphic distributor, which splits an input stream into a set of output streams.
Distributor(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Distributor
Construct an actor in the specified container with the specified name.
divide(Type) - Method in class org.geon.DBConnectionToken.DBConnectionType
Return a new type which represents the type that results from dividing a token of this type and a token of the given argument type.
divide(Type) - Method in class org.kepler.gis.data.BoundingBoxToken.BoundingBoxType
 
divide(Type) - Method in class org.kepler.gis.data.GISToken.GISType
 
divide(Type) - Method in class org.kepler.gis.data.RasterToken.RasterType
 
divide(Type) - Method in class org.kepler.gis.data.VectorToken.VectorType
 
divide - Variable in class ptolemy.actor.lib.MultiplyDivide
Input for tokens to be divided.
divide(Token) - Method in class ptolemy.data.AbstractConvertibleToken
Return a new token whose value is the value of this token divided by the value of the argument token.
divide(Token) - Method in class ptolemy.data.AbstractNotConvertibleToken
Return a new token whose value is the value of this token divided by the value of the argument token.
divide(Token) - Method in class ptolemy.data.ArrayToken
Divide this array token by the specified argument.
DIVIDE - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
divide(Token) - Method in class ptolemy.data.MatrixToken
Return a new token whose value is the value of this token divided by the value of the argument token.
divide(Token) - Method in class ptolemy.data.ScalarToken
Return a new token whose value is the value of this token divided by the value of the argument token.
divide(Token) - Method in class ptolemy.data.Token
Return a new token whose value is the value of this token divided by the value of the argument token.
divide(Type) - Method in class ptolemy.data.type.ActorType
Return a new type which represents the type that results from dividing a token of this type and a token of the given argument type.
divide(Type) - Method in class ptolemy.data.type.BaseType
Return a new type which represents the type that results from dividing a token of this type and a token of the given argument type.
divide(Type) - Method in class ptolemy.data.type.FixType
Return a new type which represents the type that results from dividing a token of this type and a token of the given argument type.
divide(Type) - Method in class ptolemy.data.type.StructuredType
Return a new type which represents the type that results from dividing a token of this type and a token of the given argument type.
divide(Type) - Method in class ptolemy.data.type.test.TestToken.TestType
Return a new type which represents the type that results from dividing a token of this type and a token of the given argument type.
divide(Type) - Method in interface ptolemy.data.type.Type
Return a new type which represents the type that results from dividing a token of this type and a token of the given argument type.
divide(Complex) - Method in class ptolemy.math.Complex
Divide this complex number by the argument, and return the result in a new Complex object.
divide(Complex[], Complex) - Static method in class ptolemy.math.ComplexArrayMath
Return a new array that is the result of dividing each element of the given array by the given value.
divide(Complex[][], Complex) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new matrix that is constructed from the argument by dividing the second argument to every element.
divide(double[], double) - Static method in class ptolemy.math.DoubleArrayMath
Return a new array that is the element-by-element division of the first array by the given value.
divide(double[][], double) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new matrix that is constructed from the argument by dividing the second argument to every element.
divide(FixPoint) - Method in class ptolemy.math.FixPoint
Return a FixPoint with a value equal to the division of this FixPoint by the argument.
divide(FixPoint, Quantization) - Method in class ptolemy.math.FixPoint
Return a FixPoint equal to the division of this FixPoint by the argument, after application of a quantization specification to the result.
divide(float[], float) - Static method in class ptolemy.math.FloatArrayMath
Return a new array that is the element-by-element division of the first array by the given value.
divide(float[][], float) - Static method in class ptolemy.math.FloatMatrixMath
Return a new matrix that is constructed from the argument by dividing the second argument to every element.
divide(Fraction) - Method in class ptolemy.math.Fraction
Divide this fraction by the given fraction.
divide(Fraction[], Fraction[]) - Static method in class ptolemy.math.FractionArrayMath
Return a new array that is the element-by-element division of the first array by the second array.
divide(Fraction[][], Fraction) - Static method in class ptolemy.math.FractionMatrixMath
Return a new matrix that is constructed from the argument by dividing the second argument to every element.
divide(int[], int) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array that is the formed by dividing each element of the input array by z (array[i] / z).
divide(int[][], int) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new matrix that is constructed from the argument by dividing the second argument to every element.
divide(long[], long) - Static method in class ptolemy.math.LongArrayMath
Return a new array that is the formed by dividing each element of the input array by z (array[i] / z).
divide(long[][], long) - Static method in class ptolemy.math.LongMatrixMath
Return a new matrix that is constructed from the argument by dividing the second argument to every element.
DIVIDE - Static variable in interface ptolemy.moml.unit.UParserConstants
RegularExpression Id.
divideBy(Unit) - Method in class ptolemy.moml.unit.Unit
Divide this Unit by another Unit.
divideElements(Complex[], Complex[]) - Static method in class ptolemy.math.ComplexArrayMath
Return a new array that is the element-by-element division of the first array by the second array.
divideElements(Complex[][], Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new matrix that is constructed by element-by-element division of the two matrix arguments.
divideElements(double[], double[]) - Static method in class ptolemy.math.DoubleArrayMath
Return a new array that is the element-by-element division of the first array by the second array (array1[i] / array2[i]).
divideElements(double[][], double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new matrix that is constructed by element by element division of the two matrix arguments.
divideElements(float[], float[]) - Static method in class ptolemy.math.FloatArrayMath
Return a new array that is the element-by-element division of the first array by the second array (array1[i] / array2[i]).
divideElements(float[][], float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Return a new matrix that is constructed by element by element division of the two matrix arguments.
divideElements(Fraction[][], Fraction[][]) - Static method in class ptolemy.math.FractionMatrixMath
Return a new matrix that is constructed by element by element division of the two matrix arguments.
divideElements(int[], int[]) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array that is the element-by-element division of the first array by the second array (array1[i] / array2[i]).
divideElements(int[][], int[][]) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new matrix that is constructed by element by element division of the two matrix arguments.
divideElements(long[], long[]) - Static method in class ptolemy.math.LongArrayMath
Return a new array that is the element-by-element division of the first array by the second array (array1[i] / array2[i]).
divideElements(long[][], long[][]) - Static method in class ptolemy.math.LongMatrixMath
Return a new matrix that is constructed by element by element division of the two matrix arguments.
dividePrecision(Precision, Precision) - Static method in class ptolemy.math.FixPoint
Determines the Precision of a divide operation between two FixPoint values.
divideReverse(Token) - Method in class ptolemy.data.AbstractConvertibleToken
Return a new token whose value is the value of the argument token divided by the value of this token.
divideReverse(Token) - Method in class ptolemy.data.AbstractNotConvertibleToken
Return a new token whose value is the value of the argument token divided by the value of this token.
divideReverse(Token) - Method in class ptolemy.data.ArrayToken
Divide this array token into the specified argument.
divideReverse(Token) - Method in class ptolemy.data.MatrixToken
Return a new token whose value is the value of the argument token divided by the value of this token.
divideReverse(Token) - Method in class ptolemy.data.ScalarToken
Return a new token whose value is the value of this token divided into the value of the argument token.
divideReverse(Token) - Method in class ptolemy.data.Token
Return a new token whose value is the value of the argument token divided by the value of this token.
divisor - Variable in class ptolemy.actor.lib.Remainder
The divisor for calculating the remainder.
DLU14_BORDER - Static variable in class com.jgoodies.forms.factories.Borders
A prepared Border with 14dlu on all sides.
DLU2_BORDER - Static variable in class com.jgoodies.forms.factories.Borders
A prepared and reusable Border with 2dlu on all sides.
DLU4_BORDER - Static variable in class com.jgoodies.forms.factories.Borders
A prepared and reusable Border with 4dlu on all sides.
DLU7_BORDER - Static variable in class com.jgoodies.forms.factories.Borders
A prepared and reusable Border with 7dlu on all sides.
DLUX - Static variable in class com.jgoodies.forms.layout.ConstantSize
 
dluX(int) - Static method in class com.jgoodies.forms.layout.Sizes
Creates and returns a ConstantSize for the specified value in horizontal dialog units.
DLUX1 - Static variable in class com.jgoodies.forms.layout.Sizes
 
DLUX11 - Static variable in class com.jgoodies.forms.layout.Sizes
 
DLUX14 - Static variable in class com.jgoodies.forms.layout.Sizes
 
DLUX2 - Static variable in class com.jgoodies.forms.layout.Sizes
 
DLUX3 - Static variable in class com.jgoodies.forms.layout.Sizes
 
DLUX4 - Static variable in class com.jgoodies.forms.layout.Sizes
 
DLUX5 - Static variable in class com.jgoodies.forms.layout.Sizes
 
DLUX6 - Static variable in class com.jgoodies.forms.layout.Sizes
 
DLUX7 - Static variable in class com.jgoodies.forms.layout.Sizes
 
DLUX8 - Static variable in class com.jgoodies.forms.layout.Sizes
 
DLUX9 - Static variable in class com.jgoodies.forms.layout.Sizes
 
DLUY - Static variable in class com.jgoodies.forms.layout.ConstantSize
 
dluY(int) - Static method in class com.jgoodies.forms.layout.Sizes
Creates and returns a ConstantSize for the specified value in vertical dialog units.
DLUY1 - Static variable in class com.jgoodies.forms.layout.Sizes
 
DLUY11 - Static variable in class com.jgoodies.forms.layout.Sizes
 
DLUY14 - Static variable in class com.jgoodies.forms.layout.Sizes
 
DLUY2 - Static variable in class com.jgoodies.forms.layout.Sizes
 
DLUY3 - Static variable in class com.jgoodies.forms.layout.Sizes
 
DLUY4 - Static variable in class com.jgoodies.forms.layout.Sizes
 
DLUY5 - Static variable in class com.jgoodies.forms.layout.Sizes
 
DLUY6 - Static variable in class com.jgoodies.forms.layout.Sizes
 
DLUY7 - Static variable in class com.jgoodies.forms.layout.Sizes
 
DLUY8 - Static variable in class com.jgoodies.forms.layout.Sizes
 
DLUY9 - Static variable in class com.jgoodies.forms.layout.Sizes
 
DndList - Class in org.mlc.swing.layout
DndList class.
DndList(FormEditor, ListModel) - Constructor for class org.mlc.swing.layout.DndList
 
DO_COPY - Static variable in class ptolemy.data.MatrixToken
A constant indicating to constructors that contents of an argument 2-D matrix should be copied.
DO_NOT_COPY - Static variable in class ptolemy.data.MatrixToken
A constant indicating to constructors not to copy the contents of an argument 2-D matrix, but instead to just copy the pointer to the matrix.
doAction() - Method in class org.kepler.gui.AuthenticateAction
 
doAction() - Method in class org.kepler.gui.AuthenticationWithDomainNameAction
 
doAction() - Method in class org.kepler.workflowscheduler.gui.DisableScheduleAction
Disable a schedule in the scheduler server.
doAction() - Method in class org.kepler.workflowscheduler.gui.EnableScheduleAction
Enable a schedule in the scheduler server.
doAction() - Method in class org.kepler.workflowscheduler.gui.RemoveScheduleAction
Remove a schedule from the scheduler server.
doAction() - Method in class org.kepler.workflowscheduler.gui.SchedulerAbstractAction
Do the real action.
doAction() - Method in class org.kepler.workflowscheduler.gui.ScheduleWorkflowAction
Schedule the workflow
doAction(NamedObj) - Method in interface ptolemy.vergil.basic.IGuiAction
Perform the action/modification on the current model triggered by a Vergil GUI action.
doAction(NamedObj) - Method in class ptolemy.vergil.basic.layout.kieler.KielerLayoutAction
Layout the graph if the model is a CompositeActor.
doAction(NamedObj) - Method in class ptolemy.vergil.basic.PtolemyLayoutAction
Layout the graph if the model is a CompositeActor.
doCall(String, Object[]) - Method in class org.sdm.spa.SoaplabServiceClient
Performs the actual web service execution via calling the AxisCall's doCall method which executes the given operation with input values.
DocApplicationSpecializer - Interface in ptolemy.vergil.actor
An interface that specializes the documentation system to the application.
DocAttribute - Class in ptolemy.vergil.basic
An attribute containing documentation for a Ptolemy II object.
DocAttribute(NamedObj, String) - Constructor for class ptolemy.vergil.basic.DocAttribute
Construct a documentation attribute with the given name contained by the specified entity.
DocAttribute() - Constructor for class ptolemy.vergil.basic.DocAttribute
Construct an empty DocAttribute.
DocAttribute(Workspace) - Constructor for class ptolemy.vergil.basic.DocAttribute
Construct a DocAttribute in a given workspace.
DocAttributeChanges - Class in ptolemy.moml.filter
A MoML filter to convert StringParameters contained by DocAttribute to StringAttributes.
DocAttributeChanges() - Constructor for class ptolemy.moml.filter.DocAttributeChanges
 
DocBuilder - Class in ptolemy.vergil.actor
Build Documentation for Java and Actors.
DocBuilder(NamedObj, String) - Constructor for class ptolemy.vergil.actor.DocBuilder
Create a new instance of the DocBuilder.
DocBuilderEffigy - Class in ptolemy.vergil.actor
An effigy for a DocBuilder.
DocBuilderEffigy(CompositeEntity, String) - Constructor for class ptolemy.vergil.actor.DocBuilderEffigy
Create a new effigy in the given directory with the given name.
DocBuilderEffigy.Factory - Class in ptolemy.vergil.actor
A factory for creating new effigies.
DocBuilderGUI - Class in ptolemy.vergil.actor
A PtolemyFrame that builds the Java and Actor documentation.
DocBuilderGUI(DocBuilder, Tableau) - Constructor for class ptolemy.vergil.actor.DocBuilderGUI
Construct a frame to build the Java and Actor documentation.
DocBuilderTableau - Class in ptolemy.vergil.actor
A tableau representing a documentation builder.
DocBuilderTableau(Effigy, String) - Constructor for class ptolemy.vergil.actor.DocBuilderTableau
Construct a new tableau for the model represented by the given effigy.
DocBuilderTableau.Factory - Class in ptolemy.vergil.actor
A factory that creates DocBuilderGUI tableaux for Ptolemy models.
docClassNameToURL(String, String, boolean, boolean, boolean, boolean) - Method in class org.kepler.gui.KeplerDocApplicationSpecializer
Given a dot separated class name, return the URL of the PtDoc .xml file documentation or the Actor Index.
docClassNameToURL(String, String, boolean, boolean, boolean, boolean) - Method in interface ptolemy.vergil.actor.DocApplicationSpecializer
Given a dot separated class name, return the URL of the documentation.
docClassNameToURL(Configuration, String, boolean, boolean, boolean, boolean) - Static method in class ptolemy.vergil.actor.DocManager
Given a dot separated class name, return the URL of the documentation.
DocEffigy - Class in ptolemy.vergil.actor
An effigy for a doc file.
DocEffigy(CompositeEntity, String) - Constructor for class ptolemy.vergil.actor.DocEffigy
Create a new effigy in the given directory with the given name.
DocEffigy.Factory - Class in ptolemy.vergil.actor
A factory for creating new effigies.
doCheckOutput - Variable in class org.sdm.spa.ProcessFileRT
 
doCkpt - Variable in class org.sdm.spa.ProcessFileRT
 
doClose() - Method in class org.kepler.sms.gui.ActorSemanticTypeEditorPane
Performs the cancel button operation.
doClose() - Method in class org.kepler.sms.gui.PortSemanticTypeEditorPane
 
DocManager - Class in ptolemy.vergil.actor
A manager for documentation for an associated Ptolemy II object.
DocManager(Configuration, NamedObj) - Constructor for class ptolemy.vergil.actor.DocManager
Construct a manager to handle documentation for the specified target.
DocManager(Configuration, Class) - Constructor for class ptolemy.vergil.actor.DocManager
Construct a manager to handle documentation for the specified target class.
DocManager(Configuration, URL) - Constructor for class ptolemy.vergil.actor.DocManager
Construct a manager for documentation at the specified URL.
DocML_DTD_1 - Static variable in class ptolemy.vergil.actor.DocManager
The standard DocML DTD, represented as a string.
doCommit() - Method in class org.kepler.sms.gui.ActorSemanticTypeEditorPane
Performs the commit button operation.
doCommit() - Method in class org.kepler.sms.gui.PortSemanticTypeEditorPane
Performs the commit button operation.
DocTableau - Class in ptolemy.vergil.actor
A tableau representing a documentation view in a toplevel window.
DocTableau(Effigy, String) - Constructor for class ptolemy.vergil.actor.DocTableau
Construct a new tableau for the model represented by the given effigy.
DocTableau.Factory - Class in ptolemy.vergil.actor
A factory that creates Doc viewer tableaux for Ptolemy models.
doctypeDecl(String, String, String) - Method in class com.microstar.xml.demo.DtdDemo
Dump the DTD.
doctypeDecl(String, String, String) - Method in class com.microstar.xml.demo.EventDemo
Handle a DOCTYPE declaration by printing an event.
doctypeDecl(String, String, String) - Method in class com.microstar.xml.demo.XmlApp
Handle a DOCTYPE declaration.
doctypeDecl(String, String, String) - Method in class com.microstar.xml.demo.XmlApplet
Handle a DOCTYPE declaration.
doctypeDecl(String, String, String) - Method in class com.microstar.xml.driver.SAXDriver
Implement com.microstar.xml.XmlHandler#doctypeDecl.
doctypeDecl(String, String, String) - Method in class com.microstar.xml.HandlerBase
Handle a document type declaration.
doctypeDecl(String, String, String) - Method in interface com.microstar.xml.XmlHandler
Document type declaration.
doctypeDecl(String, String, String) - Method in class ptolemy.moml.MoMLParser
If a public ID is given, and is not that of MoML, then throw a CancelException, which causes the parse to abort and return null.
Documentation - Class in ptolemy.moml
An attribute that contains documentation for the container.
Documentation(NamedObj, String) - Constructor for class ptolemy.moml.Documentation
Construct an attribute with the specified container and name.
DocumentationAttribute - Class in org.kepler.moml
Deprecated.
Use ptolemy.vergil.basic.KeplerDocumentationAttribute instead.
DocumentationAttribute() - Constructor for class org.kepler.moml.DocumentationAttribute
Deprecated.
Constructor
DocumentationAttribute(NamedObj, String) - Constructor for class org.kepler.moml.DocumentationAttribute
Deprecated.
Constructor
DocumentationAttribute(Workspace) - Constructor for class org.kepler.moml.DocumentationAttribute
Deprecated.
Constructor
DocumentationAttribute - Class in ptolemy.vergil.kernel.attributes
Deprecated.
DocumentationAttribute provides no UI way to edit the URL, one must edit the MoML file by hand. Use ptolemy.vergil.basic.DocAttribute or ptolemy.vergil.pdfrenderer.PDFRenderer instead of using DocumentationAttribute.
DocumentationAttribute(NamedObj, String) - Constructor for class ptolemy.vergil.kernel.attributes.DocumentationAttribute
Deprecated.
Construct an icon with the attached this attached.
DocumentType - Class in org.ecoinformatics.seek.ecogrid
This class express a DocumentType object.
DocumentType(String, String) - Constructor for class org.ecoinformatics.seek.ecogrid.DocumentType
In this class we only need two parameters namepace and readable label.
DocumentType(DocumentType) - Constructor for class org.ecoinformatics.seek.ecogrid.DocumentType
Copy constructor
DOCUMENTTYPE - Static variable in class org.ecoinformatics.seek.ecogrid.MetadataSpecificationInterface
Description of the Field
DOCUMENTTYPECOL - Static variable in class org.ecoinformatics.seek.ecogrid.ServicesDisplayPanel
 
DOCUMENTTYPECOL - Static variable in class org.ecoinformatics.seek.ecogrid.TableTableCellRenderer
 
DocUtil - Class in org.kepler.util
a class to do some documentation tranformations
DocUtil(File) - Constructor for class org.kepler.util.DocUtil
the constructor
DocViewer - Class in ptolemy.vergil.actor
This class defines a specialized window for displaying Ptolemy II actor documentation.
DocViewer(NamedObj, Configuration) - Constructor for class ptolemy.vergil.actor.DocViewer
Construct a documentation viewer for the specified target.
DocViewer(String, Configuration) - Constructor for class ptolemy.vergil.actor.DocViewer
Construct a documentation viewer for the specified class name.
DocViewer(URL, Configuration) - Constructor for class ptolemy.vergil.actor.DocViewer
Construct a documentation viewer for the specified documentation file.
DocViewerFactory - Class in ptolemy.vergil.basic
An attribute that creates an editor to open a doc viewer for its container's container.
DocViewerFactory(NamedObj, String) - Constructor for class ptolemy.vergil.basic.DocViewerFactory
Construct a factory with the specified container and name.
doDialog(JFrame, ComponentDef) - Static method in class org.mlc.swing.layout.NewComponentDialog
Creates and displays a dialog for defining a new component's settings.
doDrop(DropTargetDropEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIAdv
Does the drop
doDrop(DropTargetDropEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIBase
Perform the drop action for the sub-class of choice
doDrop(DropTargetDropEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIStd
Does the drop,
doInBackground() - Method in class org.kepler.gui.ProgressMonitorSwingWorker
Construct the frame.
doInBackground() - Method in class org.kepler.workflowscheduler.gui.SearchScheduleSwingWorker
Compute the value to be returned by the get method.
doInBackground() - Method in class org.kepler.workflowscheduler.gui.UploadingKARFileSwingWorker
Do the uploading job
doIsPermitted(String, Handler<AsyncResult<Boolean>>) - Method in class org.kepler.webview.server.auth.DrupalUser
 
doIsPermitted(String, Handler<AsyncResult<Boolean>>) - Method in class org.kepler.webview.server.auth.NoneUser
 
doLayoutAndPack() - Method in class ptolemy.actor.gui.EditParametersDialog
Do the layout and then pack.
doLayoutAndPack() - Method in interface ptolemy.gui.EditableParametersDialog
Do the layout and then pack.
DOLLAR - Static variable in interface ptolemy.moml.unit.UParserConstants
RegularExpression Id.
DOM_BOUNDED - Static variable in interface org.kepler.objectmanager.data.Domain
 
DOM_DATETIME - Static variable in interface org.kepler.objectmanager.data.Domain
 
DOM_ENUMENTITY - Static variable in interface org.kepler.objectmanager.data.Domain
 
DOM_ENUMERATED - Static variable in interface org.kepler.objectmanager.data.Domain
 
DOM_NONE - Static variable in interface org.kepler.objectmanager.data.Domain
 
DOM_NUMBERTYPE - Static variable in interface org.kepler.objectmanager.data.Domain
 
DOM_REFERENCE - Static variable in interface org.kepler.objectmanager.data.Domain
 
DOM_TEXT - Static variable in interface org.kepler.objectmanager.data.Domain
 
Domain - Class in org.kepler.authentication
Domain is used to represent the organization which the user belongs to.
Domain() - Constructor for class org.kepler.authentication.Domain
 
Domain - Interface in org.kepler.objectmanager.data
This object represents an Attribute Domain, a set of restrictions on legal values that the attribute can contain
DOMAIN_BREAK - Static variable in class org.kepler.authentication.gui.DomainSelectionGUI
 
DomainList - Class in org.kepler.authentication
The DomainList is used to store all of the domain info included in Kepler authentication framework.
domainName - Variable in class org.kepler.gui.AuthenticateAction
 
DomainSelectionGUI - Class in org.kepler.authentication.gui
DomainSelectionGUI pops up the pre-login dialog to let user select the authentication domain
DomainSelectionGUI() - Constructor for class org.kepler.authentication.gui.DomainSelectionGUI
The constructor is used to build all the display components
domainSessionHash - Static variable in class org.kepler.workflowscheduler.gui.SchedulerAbstractAction
 
DomToTreeModelAdapter() - Constructor for class org.sdm.spa.gui.XMLUIP.DomToTreeModelAdapter
 
done - Variable in class org.kepler.gis.actor.io.GISWriter
The name of the output file is sent to this port when the data has been written.
done() - Method in class org.kepler.gui.ProgressMonitorSwingWorker
Remove the frame.
Done() - Method in class ptolemy.data.expr.SimpleCharStream
Reset buffer when finished.
done - Variable in class ptolemy.kernel.util.test.TestWorkspace2.Notification
 
Done() - Method in class ptolemy.moml.unit.SimpleCharStream
Reset buffer when finished.
doneReading() - Method in class ptolemy.kernel.util.Workspace
Indicate that the calling thread is finished reading.
doneTemporaryWriting() - Method in class ptolemy.kernel.util.Workspace
Indicate that the calling thread is finished writing.
doneTests() - Static method in class ptolemy.util.test.junit.TclTests
Call the Tcl doneTests command to print out the number of errors.
doneWriting() - Method in class ptolemy.kernel.util.Workspace
Indicate that the calling thread is finished writing.
DoNothingDirector - Class in ptolemy.actor
A director that does nothing, for use in models that have no useful execution.
DoNothingDirector(CompositeEntity, String) - Constructor for class ptolemy.actor.DoNothingDirector
Construct a director with the given container and name.
doPadding(Vector<Object>, String) - Method in class org.kepler.data.datasource.dataturbine.DataTurbine
 
doProcessing - Variable in class org.sdm.spa.ProcessFileRT
 
doSort(Object[], int, int) - Static method in class org.ecoinformatics.seek.querybuilder.QuickSort
Sorts an Object array of items and uses toString to do String compares for collation
dotKeplerConfigurationsDir - Static variable in class org.kepler.configuration.ConfigurationManager
 
DotProduct - Class in ptolemy.domains.sdf.lib
Compute the dot product of two arrays or matrices.
DotProduct(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.DotProduct
Construct an actor in the specified container with the specified name.
dotProduct(Complex[], Complex[]) - Static method in class ptolemy.math.ComplexArrayMath
Return a complex number that is the dot product of the two argument arrays.
dotProduct(double[], double[]) - Static method in class ptolemy.math.DoubleArrayMath
Return the dot product of the two arrays.
dotProduct(float[], float[]) - Static method in class ptolemy.math.FloatArrayMath
Return the dot product of the two arrays.
dotProduct(Fraction[], Fraction[]) - Static method in class ptolemy.math.FractionArrayMath
Return the dot product of the two arrays.
dotProduct(int[], int[]) - Static method in class ptolemy.math.IntegerArrayMath
Return the dot product of the two arrays.
dotProduct(long[], long[]) - Static method in class ptolemy.math.LongArrayMath
Return the dot product of the two arrays.
DOUBLE - Static variable in class org.ecoinformatics.seek.dataquery.DBTablesGenerator
 
DOUBLE - Static variable in class org.kepler.objectmanager.data.DataType
 
DOUBLE - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
DOUBLE - Static variable in class ptolemy.data.type.BaseType
The double data type.
DOUBLE - Static variable in interface ptolemy.moml.unit.UParserConstants
RegularExpression Id.
DOUBLE_MATRIX - Static variable in class ptolemy.data.type.BaseType
The double matrix data type.
DOUBLE_PRECISION_SIGNIFICAND_ONLY - Static variable in class ptolemy.math.ExtendedMath
The constant value of a double representation that has all bits as 1 except the sign bit, where only the significand contributes to the value.
DOUBLE_PRECISION_SMALLEST_NORMALIZED_POSITIVE_DOUBLE - Static variable in class ptolemy.math.ExtendedMath
The smallest, normalized, positive double value with a double precision.
DoubleArrayMath - Class in ptolemy.math
This class provides a library for mathematical operations on double arrays.
DoubleArrayMath() - Constructor for class ptolemy.math.DoubleArrayMath
 
DoubleArrayStat - Class in ptolemy.math
This class provides a library for statistical operations on arrays of doubles.
DoubleArrayStat() - Constructor for class ptolemy.math.DoubleArrayStat
 
DoubleBinaryOperation - Interface in ptolemy.math
A operation taking two operands of type double, and producing a value of type double.
DoubleCQComparator - Class in ptolemy.actor.util.test
This class implements the CQComparator interface.
DoubleCQComparator() - Constructor for class ptolemy.actor.util.test.DoubleCQComparator
 
DoubleFieldChooser - Class in org.ecoinformatics.seek.util
 
DoubleFieldChooser(CompositeEntity, String) - Constructor for class org.ecoinformatics.seek.util.DoubleFieldChooser
Construct an actor with the given container and name.
doubleMatrix() - Method in class ptolemy.data.DoubleMatrixToken
Return the content in the token as a 2-D double matrix.
doubleMatrix() - Method in class ptolemy.data.IntMatrixToken
Return the content of this token as a 2-D double matrix.
doubleMatrix() - Method in class ptolemy.data.MatrixToken
Return the content of this token as a 2-D double matrix.
DoubleMatrixMath - Class in ptolemy.math
This class provides a library for mathematical operations on matrices of doubles.
DoubleMatrixToken - Class in ptolemy.data
A token that contains a 2-D double matrix.
DoubleMatrixToken() - Constructor for class ptolemy.data.DoubleMatrixToken
Construct an DoubleMatrixToken with a one by one matrix.
DoubleMatrixToken(double[], int, int) - Constructor for class ptolemy.data.DoubleMatrixToken
Construct a DoubleMatrixToken with the specified 1-D matrix.
DoubleMatrixToken(double[], int, int, int) - Constructor for class ptolemy.data.DoubleMatrixToken
Construct a DoubleMatrixToken with the specified 1-D matrix.
DoubleMatrixToken(double[][]) - Constructor for class ptolemy.data.DoubleMatrixToken
Construct a DoubleMatrixToken with the specified 2-D matrix.
DoubleMatrixToken(double[][], int) - Constructor for class ptolemy.data.DoubleMatrixToken
Construct a DoubleMatrixToken with the specified 2-D matrix.
DoubleMatrixToken(String) - Constructor for class ptolemy.data.DoubleMatrixToken
Construct a DoubleMatrixToken from the specified string.
DoubleMatrixToken(Token[], int, int) - Constructor for class ptolemy.data.DoubleMatrixToken
Construct an DoubleMatrixToken from the specified array of tokens.
DoubleMatrixType() - Constructor for class ptolemy.data.type.MatrixType.DoubleMatrixType
 
doubleMultiply(Double, Double) - Static method in class ptolemy.data.test.TokenUtilitiesTest
Multiply two Doubles and return the String value.
doublePeriod() - Method in class ptolemy.kernel.util.test.system.TestDE
Double the period of the clock.
DoubleRangeParameter - Class in ptolemy.actor.parameters
This is a parameter with type double with a limited range and limited precision.
DoubleRangeParameter(NamedObj, String) - Constructor for class ptolemy.actor.parameters.DoubleRangeParameter
Construct an attribute with the given name contained by the specified container.
DoubleReader - Class in ptolemy.actor.lib
Deprecated.
Use ExpressionReader instead.
DoubleReader(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.DoubleReader
Deprecated.
Construct an actor with the given container and name.
DoubleShellTAPEffigy - Class in org.sdm.spa.gui
Based on the original Ptolemy II v.3.0.2 code for expression shell.
DoubleShellTAPEffigy(Workspace) - Constructor for class org.sdm.spa.gui.DoubleShellTAPEffigy
Create a new effigy in the specified workspace with an empty string for its name.
DoubleShellTAPEffigy(CompositeEntity, String) - Constructor for class org.sdm.spa.gui.DoubleShellTAPEffigy
Create a new effigy in the given container with the given name.
DoubleShellTAPEffigy.ShellFactory - Class in org.sdm.spa.gui
A factory for creating new Ptolemy effigies.
DoubleShellTAPTableau - Class in org.sdm.spa.gui
Based on the Ptolemy II v.3.0.2 code ExpressionShellTableau.java A tableau that provides an interactive shell for evaluating expressions.
DoubleShellTAPTableau(DoubleShellTAPEffigy, String) - Constructor for class org.sdm.spa.gui.DoubleShellTAPTableau
Create a new tableau.
DoubleShellTAPTableau.Factory - Class in org.sdm.spa.gui
A factory that creates a control panel to display a Tcl Shell
DoubleShellTAPTableauFrame - Class in org.sdm.spa.gui
Based on the Ptolemy II v.3.0.2 code for ExpressionShellFrame.
DoubleShellTAPTableauFrame(DoubleShellTAPTableau) - Constructor for class org.sdm.spa.gui.DoubleShellTAPTableauFrame
Construct a frame to display the ExpressionShell window.
DoubleShellTextAreaPanel - Class in org.sdm.spa.gui
A read-only text area showing the result of the previous step and a text area supporting shell-style interactions.
DoubleShellTextAreaPanel() - Constructor for class org.sdm.spa.gui.DoubleShellTextAreaPanel
Create a new instance with no initial message.
DoubleShellTextAreaPanel(String) - Constructor for class org.sdm.spa.gui.DoubleShellTextAreaPanel
Create a new instance with the specified initial message.
DoubleToFix - Class in ptolemy.actor.lib.conversions
This actor converts a DoubleToken to a FixToken with a specified precision.
DoubleToFix(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.conversions.DoubleToFix
Construct an actor with the given container and name.
DoubleToken - Class in ptolemy.data
A token that contains a 64-bit signed mantissa, signed exponent double precision floating-point number (IEEE 754).
DoubleToken() - Constructor for class ptolemy.data.DoubleToken
Construct a DoubleToken with value 0.0.
DoubleToken(double) - Constructor for class ptolemy.data.DoubleToken
Construct a DoubleToken with the specified value.
DoubleToken(String) - Constructor for class ptolemy.data.DoubleToken
Construct a DoubleToken from the specified string.
DoubleToMatrix - Class in ptolemy.domains.sdf.lib
Deprecated.
Use SequenceToMatrix instead.
DoubleToMatrix(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.DoubleToMatrix
Deprecated.
Construct an actor with the given container and name.
doubleToString(double) - Static method in class org.json.JSONObject
Produce a string from a double.
DoubleUnaryOperation - Interface in ptolemy.math
A operation taking one argument of type double, and producing a value of type double.
DoubleUtilities - Class in ptolemy.util
Utilities for double primitives.
doubleValue() - Method in class ptolemy.data.DoubleToken
Return the value in the token as a double.
doubleValue() - Method in class ptolemy.data.FloatToken
Return the value in the token as a double.
doubleValue() - Method in class ptolemy.data.IntToken
Return the value in the token as a double.
doubleValue() - Method in class ptolemy.data.PetiteToken
Return the value in the token as a double.
doubleValue() - Method in class ptolemy.data.ScalarToken
Return the value of this token as a double.
doubleValue() - Method in class ptolemy.data.ShortToken
Return the value in the token as a double.
doubleValue() - Method in class ptolemy.data.UnsignedByteToken
Return the value in the token as a double.
doubleValue(String) - Method in class ptolemy.gui.Query
Deprecated.
Use getDoubleValue(String name) instead.
doubleValue() - Method in class ptolemy.math.FixPoint
Return the value of this FixPoint as a double.
doUpdate(boolean) - Method in class org.ecoinformatics.seek.querybuilder.DBWherePanel
Updates the inspector UI depending on the type of object being editted
doUpload() - Method in class org.kepler.gui.kar.ExportArchiveAction
 
DOWN - Static variable in class ptolemy.math.Rounding
Singleton implementing down rounding strategy.
DOWN - Static variable in class ptolemy.vergil.toolbox.MoveAction
Indicator for move down.
downArrow - Variable in class ptolemy.actor.lib.gui.ArrowKeySensor
Output port, which has type IntToken.
download(String, Long, String, boolean) - Method in class org.kepler.objectmanager.repository.KARDownloader
Download a KAR.
download(KarXml, boolean) - Method in class org.kepler.objectmanager.repository.KARDownloader
Given karXML for a KAR, download KAR.
DownloadableKAREntityLibrary - Class in org.kepler.moml
Created by IntelliJ IDEA.
DownloadableKAREntityLibrary() - Constructor for class org.kepler.moml.DownloadableKAREntityLibrary
 
DownloadableKAREntityLibrary(Workspace) - Constructor for class org.kepler.moml.DownloadableKAREntityLibrary
 
DownloadableKAREntityLibrary(CompositeEntity, String, KarXml) - Constructor for class org.kepler.moml.DownloadableKAREntityLibrary
 
DownloadableKAREntityLibrary(CompositeEntity, DownloadableKAREntityLibrary) - Constructor for class org.kepler.moml.DownloadableKAREntityLibrary
 
DownloadableKARPopup - Class in org.kepler.gui.popups
Created by IntelliJ IDEA.
DownloadableKARPopup(TreePath, Component) - Constructor for class org.kepler.gui.popups.DownloadableKARPopup
 
downloadAllRunKARs(boolean) - Method in class org.kepler.util.ProvenanceStore
Deprecated.
works fine, but probably better to download KARs using the info found in the tracker file queries.
downloadAllWorkflowRuns(boolean) - Method in class org.kepler.util.ProvenanceStore
Download all components of WorkflowRuns (and KAR attributes necessary to download the KAR) found within KARs on the Ecogrid into WorkflowRunBuilders, from which you may attempt to construct WorkflowRuns.
downloadAllWorkflowRunsParsingKarXmls(boolean) - Method in class org.kepler.util.ProvenanceStore
Deprecated.
use downloadAllWorkflowRuns instead. This method is less fragile but requires downloading all karXmls, which is extremely inefficient.
downloadBegin(int, String) - Method in class org.kepler.modulemanager.gui.ModuleDownloadProgressMonitor
start up a new progress monitor at the beginning of a download.
downloadBegin(int, String) - Method in interface org.kepler.modulemanager.ModuleManagerEventListener
update the listener when a download begins
downloadDataFromSource() - Method in class org.ecoinformatics.seek.datasource.EcogridDataCacheItem
This method will download data base on distribution url in entity object
DownloadedModulesPanel - Class in org.kepler.modulemanager.gui
Created by David Welker.
DownloadedModulesPanel() - Constructor for class org.kepler.modulemanager.gui.DownloadedModulesPanel
 
downloadEnd() - Method in class org.kepler.modulemanager.gui.ModuleDownloadProgressMonitor
close the progress monitor at the end of the DL.
downloadEnd() - Method in interface org.kepler.modulemanager.ModuleManagerEventListener
update the listener when a download ends
downloadFromModulesTxt(ModulesTxt) - Method in class org.kepler.modulemanager.ModuleDownloader
download a set of modules as defined in a modules.txt file
DownloadKARFileAction - Class in org.kepler.gui.kar
Created by IntelliJ IDEA.
DownloadKARFileAction(TableauFrame) - Constructor for class org.kepler.gui.kar.DownloadKARFileAction
 
downloadModules(List<ModulePair>, Container) - Static method in class org.kepler.modulemanager.gui.patch.UpgradeDialogPanel
 
downloadModules(List<String>) - Method in class org.kepler.modulemanager.ModuleDownloader
download any modules in the list
downloadRunKAR(KeplerLSID, boolean) - Method in class org.kepler.workflowrunmanager.WorkflowRunManager
Download run KAR using the LSID of the preview run stand-in.
DownSample - Class in ptolemy.domains.sdf.lib
This actor downsamples an input stream by an integer factor by removing tokens.
DownSample(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.DownSample
Construct an actor with the given container and name.
downsample(double[], int) - Static method in class ptolemy.math.SignalProcessing
Return a new array that is formed by taking every nth sample starting with the 0th sample, and discarding the rest.
downsample(double[], int, int) - Static method in class ptolemy.math.SignalProcessing
Return a new array that is formed by taking every nth sample starting at startIndex, and discarding the samples in between.
downSet(Object) - Method in interface ptolemy.graph.CPO
Compute the down-set of an element in this CPO.
downSet(Object) - Method in class ptolemy.graph.DirectedAcyclicGraph
Compute the down-set of an element in this CPO.
doWork() - Method in class org.ecoinformatics.seek.datasource.EcogridCompressedDataCacheItem
This method will load data from local file first.
doWork() - Method in class org.ecoinformatics.seek.datasource.EcogridDataCacheItem
 
doWork() - Method in class org.ecoinformatics.seek.datasource.EcogridMetaDataCacheItem
 
doWork() - Method in class org.ecoinformatics.seek.datasource.EcogridQueryDataCacheItem
 
doWork() - Method in class org.kepler.objectmanager.cache.DataCacheFileObject
 
doWork() - Method in class org.kepler.objectmanager.cache.DataCacheObject
Abstract method for actually getting the data while in the thread
DRAG_AND_DROP_PANEL_HEIGHT - Static variable in class org.kepler.reporting.gui.DragAndDropPanel
 
DragAndDropPanel - Class in org.kepler.reporting.gui
 
DragAndDropPanel(ReportDesignerPanel) - Constructor for class org.kepler.reporting.gui.DragAndDropPanel
 
dragDropEnd(DragSourceDropEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableOverviewTable
stubbed
dragDropEnd(DragSourceDropEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBTableList
Clear the selection
dragDropEnd(DragSourceDropEvent) - Method in class org.kepler.reporting.gui.JLabelDragSource
 
dragDropEnd(DragSourceDropEvent) - Method in class org.mlc.swing.layout.DndList
 
dragDropEnd(DragSourceDropEvent) - Method in class ptolemy.actor.gui.run.PaletteList
In this derived class, do nothing.
dragEnter(DragSourceDragEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableOverviewTable
 
dragEnter(DropTargetDragEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIBase
Checks to see if it is the right type of object
dragEnter(DragSourceDragEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBTableList
Sets the cursor appropriately to whether it can be dropped here
dragEnter(DropTargetDragEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBTableList
Do the same as dragOver
dragEnter(DropTargetDragEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBWhereList
 
dragEnter(DropTargetDragEvent) - Method in class org.kepler.gui.CanvasDropTargetListener
called when a drag enters the canvas
dragEnter(DropTargetDragEvent) - Method in class org.kepler.objectmanager.repository.EcogridRepositoryKARDownloadListener
called when a drag enters the canvas
dragEnter(DragSourceDragEvent) - Method in class org.kepler.reporting.gui.JLabelDragSource
 
dragEnter(DropTargetDragEvent) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
 
dragEnter(DragSourceDragEvent) - Method in class org.mlc.swing.layout.DndList
 
dragEnter(DragSourceDragEvent) - Method in class ptolemy.actor.gui.run.PaletteList
In this derived class, do nothing.
dragEnter(DropTargetDragEvent) - Method in class ptolemy.vergil.basic.EditorDropTargetListener
Accept the event if the data is a known key.
dragExit(DragSourceEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableOverviewTable
sets the cursor
dragExit(DropTargetEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIBase
Stubbed
dragExit(DragSourceEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBTableList
Sets the cursor
dragExit(DropTargetEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBTableList
Clear everything when it is dragged out
dragExit(DropTargetEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBWhereList
update to remove and highlighted item rendering
dragExit(DropTargetEvent) - Method in class org.kepler.gui.CanvasDropTargetListener
called when a drag exits the canvas
dragExit(DropTargetEvent) - Method in class org.kepler.objectmanager.repository.EcogridRepositoryKARDownloadListener
called when a drag exits the canvas
dragExit(DragSourceEvent) - Method in class org.kepler.reporting.gui.JLabelDragSource
 
dragExit(DropTargetEvent) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
 
dragExit(DragSourceEvent) - Method in class org.mlc.swing.layout.DndList
 
dragExit(DragSourceEvent) - Method in class ptolemy.actor.gui.run.PaletteList
In this derived class, do nothing.
dragExit(DropTargetEvent) - Method in class ptolemy.vergil.basic.EditorDropTargetListener
Remove any highlighting that might be active.
dragGestureRecognized(DragGestureEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableOverviewTable
Starts drag
dragGestureRecognized(DragGestureEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBTableList
 
dragGestureRecognized(DragGestureEvent) - Method in class org.kepler.reporting.gui.JLabelDragSource
 
dragGestureRecognized(DragGestureEvent) - Method in class org.mlc.swing.layout.DndList
 
dragGestureRecognized(DragGestureEvent) - Method in class ptolemy.actor.gui.run.PaletteList
Start the drag.
DragListener() - Constructor for class ptolemy.plot.PlotBox.DragListener
 
DragMouseAdapter() - Constructor for class org.kepler.reporting.gui.ItemsOfInterestPanel.DragMouseAdapter
 
dragOver(DragSourceDragEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableOverviewTable
Same as drag enter
dragOver(DropTargetDragEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIBase
Checks to see if it is the right type of object
dragOver(DragSourceDragEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBTableList
Do the same as Do the same as dragOver
dragOver(DropTargetDragEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBTableList
On DragOver highlight the appropriate item and save a pointer to it in a static data member so we know where it will be dropped
dragOver(DropTargetDragEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBWhereList
Make sure the right item is highlighted
dragOver(DropTargetDragEvent) - Method in class org.kepler.gui.CanvasDropTargetListener
called when the drag moves over the canvas
dragOver(DropTargetDragEvent) - Method in class org.kepler.objectmanager.repository.EcogridRepositoryKARDownloadListener
called when the drag moves over the canvas
dragOver(DragSourceDragEvent) - Method in class org.kepler.reporting.gui.JLabelDragSource
 
dragOver(DropTargetDragEvent) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
 
dragOver(DragSourceDragEvent) - Method in class org.mlc.swing.layout.DndList
 
dragOver(DragSourceDragEvent) - Method in class ptolemy.actor.gui.run.PaletteList
In this derived class, do nothing.
dragOver(DropTargetDragEvent) - Method in class ptolemy.vergil.basic.EditorDropTargetListener
If the location of the event is over an icon for an instance of NamedObj, then highlight that icon.
drawArc(int, int, int, int, int, int) - Method in class ptolemy.plot.EPSGraphics
 
drawHorizontalGridLine - Variable in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Parameter specifying if the horizontal grid line should be drawn.
drawImage(Image, int, int, ImageObserver) - Method in class ptolemy.plot.EPSGraphics
 
drawImage(Image, int, int, int, int, ImageObserver) - Method in class ptolemy.plot.EPSGraphics
 
drawImage(Image, int, int, Color, ImageObserver) - Method in class ptolemy.plot.EPSGraphics
 
drawImage(Image, int, int, int, int, Color, ImageObserver) - Method in class ptolemy.plot.EPSGraphics
 
drawImage(Image, int, int, int, int, int, int, int, int, ImageObserver) - Method in class ptolemy.plot.EPSGraphics
 
drawImage(Image, int, int, int, int, int, int, int, int, Color, ImageObserver) - Method in class ptolemy.plot.EPSGraphics
 
drawLine(int, int, int, int) - Method in class ptolemy.plot.EPSGraphics
Draw a line, using the current color, between the points (x1, y1) and (x2, y2) in this graphics context's coordinate system.
drawNode(Object) - Method in class ptolemy.vergil.basic.LocatableNodeController
Draw the node at its location.
drawOval(int, int, int, int) - Method in class ptolemy.plot.EPSGraphics
Draw an oval bounded by the specified rectangle with the current color.
drawPolygon(int[], int[], int) - Method in class ptolemy.plot.EPSGraphics
Draw a closed polygon defined by arrays of x and y coordinates.
drawPolyline(int[], int[], int) - Method in class ptolemy.plot.EPSGraphics
 
drawRect(int, int, int, int) - Method in class ptolemy.plot.EPSGraphics
 
drawRoundRect(int, int, int, int, int, int) - Method in class ptolemy.plot.EPSGraphics
 
drawSequences() - Method in class org.sdm.spa.actors.piw.viz.DetailPanel
 
drawSequences(int) - Method in class org.sdm.spa.actors.piw.viz.DetailPanel
 
drawSequences() - Method in class org.sdm.spa.actors.piw.viz.OverviewPanel
 
drawSplines - Variable in class ptolemy.vergil.basic.layout.ModalLayoutConfiguration
Whether the edges of FSMs should be routed and drawn as splines.
drawString(AttributedCharacterIterator, int, int) - Method in class ptolemy.plot.EPSGraphics
 
drawString(String, int, int) - Method in class ptolemy.plot.EPSGraphics
Draw a string. "(" is converted to "\(" and ")" is converted to "\) so as to avoid EPS Syntax errors.
drawVerticalGridLine - Variable in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Parameter specifying if the vertical grid line should be drawn.
driverMemory - Variable in class org.kepler.spark.actor.SparkConnection
The amount of memory to use in the Spark driver.
driverMemory - Variable in class org.kepler.spark.director.SparkEngine
 
drop(DropTargetDropEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIBase
Allows DBTable items to be droped and then creates a new "row" in the table representing the item
drop(DropTargetDropEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBTableList
Drop craetes a link from one table to the other
drop(DropTargetDropEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBWhereList
Allows the drop from the table frame (JList) Checks to see if there was already some items there (mDragOverItem) and it will insert it below the item.
drop(DropTargetDropEvent) - Method in class org.kepler.gui.CanvasDropTargetListener
called when a drag is dropped over the canvas
drop(DropTargetDropEvent) - Method in class org.kepler.gui.KeplerDropTargetListener
This method is derived from the original drop() method in DTListener.
drop(DropTargetDropEvent) - Method in class org.kepler.objectmanager.repository.EcogridRepositoryKARDownloadListener
called when a drag is dropped over the canvas
drop(DropTargetDropEvent) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
 
drop(DropTargetDropEvent) - Method in class org.mlc.swing.layout.DndList
 
drop(DropTargetDropEvent) - Method in class ptolemy.actor.gui.run.PaletteList
In this derived class, do nothing.
drop(DropTargetDropEvent) - Method in class ptolemy.vergil.basic.EditorDropTargetListener
If the transferable object is recognized as a Ptolemy II object, then use the MoML description of the object to create a new instance of the object at the drop location.
dropActionChanged(DragSourceDragEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableOverviewTable
stubbed
dropActionChanged(DropTargetDragEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIBase
Stubbed
dropActionChanged(DragSourceDragEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBTableList
stubbed
dropActionChanged(DropTargetDragEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBTableList
stubbed
dropActionChanged(DropTargetDragEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBWhereList
 
dropActionChanged(DropTargetDragEvent) - Method in class org.kepler.gui.CanvasDropTargetListener
called when a drag action changes
dropActionChanged(DropTargetDragEvent) - Method in class org.kepler.objectmanager.repository.EcogridRepositoryKARDownloadListener
called when a drag action changes
dropActionChanged(DragSourceDragEvent) - Method in class org.kepler.reporting.gui.JLabelDragSource
 
dropActionChanged(DropTargetDragEvent) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
 
dropActionChanged(DragSourceDragEvent) - Method in class org.mlc.swing.layout.DndList
 
dropActionChanged(DragSourceDragEvent) - Method in class ptolemy.actor.gui.run.PaletteList
In this derived class, do nothing.
dropActionChanged(DropTargetDragEvent) - Method in class ptolemy.vergil.basic.EditorDropTargetListener
Accept the event if the data is a known key.
DropColumns - Class in org.kepler.spark.mllib
 
DropColumns(CompositeEntity, String) - Constructor for class org.kepler.spark.mllib.DropColumns
 
dropCorruptedData - Variable in class org.kepler.spark.mllib.GetLiveMeasurements
 
dropDownValue - Variable in class org.camera.service.CAMERAURLProcessor
 
dropDownValue - Variable in class org.camera.service.FastaValidation
Drop down values for choices to be selected.
dropDownValue - Variable in class org.camera.service.Fastq2Fasta
Drop down values for choices to be selected.
dropObject(NamedObj, List, String) - Method in class ptolemy.domains.modal.kernel.State
React to a list of objects being dropped onto a target.
dropObject(NamedObj, List, String) - Method in class ptolemy.domains.modal.modal.ModalController
React to a list of objects being dropped onto a target.
dropObject(NamedObj, List, String) - Method in class ptolemy.domains.modal.modal.ModalRefinement
React to a list of objects being dropped onto a target.
dropObject(NamedObj, List, String) - Method in interface ptolemy.kernel.util.DropTargetHandler
React to a list of objects being dropped onto a target.
DROPTABLE - Static variable in class org.ecoinformatics.seek.dataquery.DBTablesGenerator
 
DropTargetHandler - Interface in ptolemy.kernel.util
An interface to be implemented by the entities that specifically handle drag-and-drop events.
DrupalAuth - Class in org.kepler.webview.server.auth
AuthProvider that authenticates against a Drupal site.
DrupalAuth(String, String, String, String, String) - Constructor for class org.kepler.webview.server.auth.DrupalAuth
Create a new DrupalAuth.
DrupalUser - Class in org.kepler.webview.server.auth
NOTE: do not use this class if in clustering mode since ClusterSerializable not implemented.
DrupalUser() - Constructor for class org.kepler.webview.server.auth.DrupalUser
 
DrupalUser(JsonObject, String, String, String) - Constructor for class org.kepler.webview.server.auth.DrupalUser
 
DSPApplication - Class in ptolemy.actor.gui.jnlp
A wrapper class that calls eventually calls ptolemy.vergil.VergilApplication for use with Java Network Launching Protocol (JNLP) aka Web Start.
DSPApplication() - Constructor for class ptolemy.actor.gui.jnlp.DSPApplication
 
DSSchemaDef - Class in org.kepler.objectmanager.data.db
Simple Implementation of the DSSchemaIFace interface
DSSchemaDef() - Constructor for class org.kepler.objectmanager.data.db.DSSchemaDef
Default Constructor
DSSchemaDef(String) - Constructor for class org.kepler.objectmanager.data.db.DSSchemaDef
Constructor with a Name for the Schema
DSSchemaIFace - Interface in org.kepler.objectmanager.data.db
Schema Interface - A schema has an optional name and a list of table schemas
DSTableDef - Class in org.kepler.objectmanager.data.db
Simple Implementation of the DSTableIFace
A Table schema has a list of field schemas.
DSTableDef(String) - Constructor for class org.kepler.objectmanager.data.db.DSTableDef
Construct a DSTableDef
DSTableFieldDef - Class in org.kepler.objectmanager.data.db
Simple Implementation of DSTableKeyIFace/DSTableFieldIFace interface This class is derived from DataObjectDescription
DSTableFieldDef(String, String, String, Vector) - Constructor for class org.kepler.objectmanager.data.db.DSTableFieldDef
Construct a DSTableFieldDef.
DSTableFieldDef(String, String, String, int, Vector) - Constructor for class org.kepler.objectmanager.data.db.DSTableFieldDef
Construct a DSTableFieldDef.
DSTableFieldIFace - Interface in org.kepler.objectmanager.data.db
Interface to description a table field
DSTableIFace - Interface in org.kepler.objectmanager.data.db
Interface that describes a Tables Schema
DSTableKeyDef - Class in org.kepler.objectmanager.data.db
Simple Implementation of the DSTableKeyIFace
A key can be made up of more than one field
DSTableKeyDef() - Constructor for class org.kepler.objectmanager.data.db.DSTableKeyDef
Default Constructor
DSTableKeyIFace - Interface in org.kepler.objectmanager.data.db
Inherits from DSTableFieldIFace and adds a method to determine the type of key it is.
DtdDemo - Class in com.microstar.xml.demo
Demonstration application showing DTD queries.
DtdDemo() - Constructor for class com.microstar.xml.demo.DtdDemo
 
DualInputPatternActor - Class in org.kepler.ddp.actor.pattern
A DDP pattern composite actor with two inputs.
DualInputPatternActor(Workspace) - Constructor for class org.kepler.ddp.actor.pattern.DualInputPatternActor
Construct a new DualInputPatternActor in a workspace.
DualInputPatternActor(CompositeEntity, String) - Constructor for class org.kepler.ddp.actor.pattern.DualInputPatternActor
Construct a new DualInputPatternActor in a container with a given name.
DualVerticalViewPane - Class in org.kepler.gui
A ViewPane consisting of 2 vertical (side by side) ViewPaneLocations.
DualVerticalViewPane() - Constructor for class org.kepler.gui.DualVerticalViewPane
Constructor.
DualVerticalViewPane.Factory - Class in org.kepler.gui
A factory that creates the library panel for the editors.
duff - Variable in class org.kepler.gis.actor.landscape.CreateLandscape
Duff raster (optional).
DummyDisplay - Class in ptolemy.domains.sdf.optimize.lib
Class comments A DummyDisplay is a simple sink implementing the BufferingProfile interface.
DummyDisplay(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.optimize.lib.DummyDisplay
Create an instance of a testing actor to mimic a display sink actor.
DummyFrame - Class in ptolemy.domains.sdf.optimize.lib
Class comments A DummyFrame mimics a shared data object.
DummyFrame() - Constructor for class ptolemy.domains.sdf.optimize.lib.DummyFrame
 
DummyReferenceToken - Class in ptolemy.domains.sdf.optimize.lib
Class comments DummyReferenceToken is a token encapsulating a reference to a shared data object.
DummyReferenceToken(Object) - Constructor for class ptolemy.domains.sdf.optimize.lib.DummyReferenceToken
Create an instance of a reference token.
DummySource - Class in ptolemy.domains.sdf.optimize.lib
Class comments A simple actor acting as a dummy source used for testing the OptimizingSDFDirector.
DummySource(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.optimize.lib.DummySource
Construct an actor with the given container and name.
DummyTransformer - Class in ptolemy.domains.sdf.optimize.lib
Class comments A DummyTransformer is a simple actor with one input port and one output port imitation a filter type of actor It is used for testing the OptimizingSDFDirector.
DummyTransformer(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.optimize.lib.DummyTransformer
Constructs an instance of a dummy transformer actor for testing purposes.
dump(String) - Method in class ptolemy.data.expr.SimpleNode
 
dumpAll(Container) - Static method in class com.jgoodies.forms.debug.FormDebugUtils
Dumps all layout state to the console: column and row specifications, column and row groups, grid bounds and cell constraints.
dumpAttributes(String) - Method in class com.microstar.xml.demo.DtdDemo
Dump attributes for an element.
dumpColumnGroups(FormLayout) - Static method in class com.jgoodies.forms.debug.FormDebugUtils
Dumps the layout's column groups to the console.
dumpColumnSpecs(FormLayout) - Static method in class com.jgoodies.forms.debug.FormDebugUtils
Dumps the layout's column specifications to the console.
dumpConstraints(Container) - Static method in class com.jgoodies.forms.debug.FormDebugUtils
Dumps the component constraints to the console.
dumpElements() - Method in class com.microstar.xml.demo.DtdDemo
Produce normalised declarations for all elements.
dumpEntities() - Method in class com.microstar.xml.demo.DtdDemo
Produce normalised declarations for all general entities.
dumpGridBounds(Container) - Static method in class com.jgoodies.forms.debug.FormDebugUtils
Dumps the container's grid info to the console if and only if the container's layout is a FormLayout.
dumpGridBounds(FormLayout.LayoutInfo) - Static method in class com.jgoodies.forms.debug.FormDebugUtils
Dumps the grid layout info to the console.
dumpNotations() - Method in class com.microstar.xml.demo.DtdDemo
Produce normalised declarations for all notations.
dumpRowGroups(FormLayout) - Static method in class com.jgoodies.forms.debug.FormDebugUtils
Dumps the layout's row groups to the console.
dumpRowSpecs(FormLayout) - Static method in class com.jgoodies.forms.debug.FormDebugUtils
Dumps the layout's row specifications to the console.
DuplicatedTextInputFormat - Class in org.kepler.hadoop.io.input
This class provides InputFormat to read file(s) repeatedly.
DuplicatedTextInputFormat() - Constructor for class org.kepler.hadoop.io.input.DuplicatedTextInputFormat
 
DuplicatedTextRecordReader - Class in org.kepler.hadoop.io.input
This class provides Reader to read file(s) repeatedly.
DuplicatedTextRecordReader() - Constructor for class org.kepler.hadoop.io.input.DuplicatedTextRecordReader
 
Duplicator - Class in org.geon
This actor takes as inputs a token and an integer number n and duplicates the token n times.
Duplicator(CompositeEntity, String) - Constructor for class org.geon.Duplicator
Construct an actor with the given container and name.
DURATION - Static variable in class org.kepler.workflowrunmanager.WRMDefaults
 
DURATION_COLUMN_WIDTH - Static variable in class org.kepler.workflowrunmanager.WRMDefaults
 
DurationCellEditor - Class in org.kepler.workflowrunmanager.gui
 
DurationCellEditor(JTextField) - Constructor for class org.kepler.workflowrunmanager.gui.DurationCellEditor
 
DurationCellRenderer - Class in org.kepler.workflowrunmanager.gui
 
DurationCellRenderer() - Constructor for class org.kepler.workflowrunmanager.gui.DurationCellRenderer
 
durationPortParam - Variable in class org.kepler.data.datasource.dataturbine.DataTurbine
The duration of the request.
DurationQueryParse - Class in org.kepler.workflowrunmanager
 
DurationQueryParse(String) - Constructor for class org.kepler.workflowrunmanager.DurationQueryParse
 
dx - Variable in class com.numericsolutions.geomodeltools.DensityGridActor
 
dy - Variable in class com.numericsolutions.geomodeltools.DensityGridActor
 
DygraphsJSPlotterAttribute - Class in ptolemy.vergil.basic.export.web
Attribute for generating the HTML file with JavaScript to plot simulation results using the Dygraphs library.
DygraphsJSPlotterAttribute(NamedObj, String) - Constructor for class ptolemy.vergil.basic.export.web.DygraphsJSPlotterAttribute
Construct an attribute that will generate HTML to plot using the Dygraphs library.
DYNAMIC_REPORT_ITEM_VIEW_HEIGHT - Static variable in class org.kepler.reporting.gui.DynamicReportItemPanel
 
DYNAMIC_REPORT_ITEM_VIEW_WIDTH - Static variable in class org.kepler.reporting.gui.DynamicReportItemPanel
 
DynamicEditorIcon - Class in ptolemy.vergil.icon
An icon that provides for the possibility that figures may be dynamically updated.
DynamicEditorIcon(Workspace, String) - Constructor for class ptolemy.vergil.icon.DynamicEditorIcon
Construct an icon in the specified workspace and name.
DynamicEditorIcon(NamedObj, String) - Constructor for class ptolemy.vergil.icon.DynamicEditorIcon
Create a new icon with the given name in the given container.
DynamicReportItem - Class in org.kepler.reporting.rio
 
DynamicReportItem() - Constructor for class org.kepler.reporting.rio.DynamicReportItem
 
DynamicReportItem(String) - Constructor for class org.kepler.reporting.rio.DynamicReportItem
 
DynamicReportItem.AlignmentValues - Enum in org.kepler.reporting.rio
 
DynamicReportItem.DynamicItemProperties - Enum in org.kepler.reporting.rio
 
DynamicReportItem.ScaleValues - Enum in org.kepler.reporting.rio
 
DynamicReportItemLabelDocumentListener() - Constructor for class org.kepler.reporting.gui.DynamicReportItemPanel.DynamicReportItemLabelDocumentListener
 
DynamicReportItemLabelMouseListener() - Constructor for class org.kepler.reporting.gui.DynamicReportItemPanel.DynamicReportItemLabelMouseListener
 
DynamicReportItemPanel - Class in org.kepler.reporting.gui
 
DynamicReportItemPanel(ReportDesignerPanel, Item, JRadioButton, DeleteItemButton, String, ReportLayout, TableauFrame) - Constructor for class org.kepler.reporting.gui.DynamicReportItemPanel
 
DynamicReportItemPanel.DynamicReportItemLabelDocumentListener - Class in org.kepler.reporting.gui
 
DynamicReportItemPanel.DynamicReportItemLabelMouseListener - Class in org.kepler.reporting.gui
 

E

e0 - Variable in class ptolemy.kernel.test.ExampleSystem
 
e1 - Variable in class ptolemy.kernel.test.ExampleSystem
 
e10 - Variable in class ptolemy.kernel.test.ExampleSystem
 
e2 - Variable in class ptolemy.kernel.test.ExampleSystem
 
e3 - Variable in class ptolemy.kernel.test.ExampleSystem
 
e4 - Variable in class ptolemy.kernel.test.ExampleSystem
 
e5 - Variable in class ptolemy.kernel.test.ExampleSystem
 
e6 - Variable in class ptolemy.kernel.test.ExampleSystem
 
e7 - Variable in class ptolemy.kernel.test.ExampleSystem
 
e8 - Variable in class ptolemy.kernel.test.ExampleSystem
 
e9 - Variable in class ptolemy.kernel.test.ExampleSystem
 
EAST - Static variable in class org.kepler.reporting.rio.ItemLabel
 
EasyGenerationContentHandlerProxy - Class in org.kepler.reporting.rio.fop.tools
This class is an implementation of ContentHandler which acts as a proxy to another ContentHandler and has the purpose to provide a few handy methods that make life easier when generating SAX events.
EasyGenerationContentHandlerProxy(ContentHandler) - Constructor for class org.kepler.reporting.rio.fop.tools.EasyGenerationContentHandlerProxy
Main constructor.
Echo - Class in org.kepler.webview.server.app
Example app that echos input parameters.
Echo() - Constructor for class org.kepler.webview.server.app.Echo
 
echoBoxColor - Variable in class ptolemy.vergil.icon.CopyCatIcon
Color of the echo boxes.
echos - Variable in class ptolemy.vergil.icon.CopyCatIcon
The number of echos of the bounding box to draw.
ECOGRID_REPOSITORY - Static variable in class org.kepler.util.ProvenanceStore
 
EcogridCompressedDataCacheItem - Class in org.ecoinformatics.seek.datasource
This class will handle compressed data object(for example a zip file) download from server in Chache system.
EcogridCompressedDataCacheItem() - Constructor for class org.ecoinformatics.seek.datasource.EcogridCompressedDataCacheItem
Default constructor
EcogridCompressedDataCacheItem(boolean) - Constructor for class org.ecoinformatics.seek.datasource.EcogridCompressedDataCacheItem
Constructor
EcogridDataCacheItem - Class in org.ecoinformatics.seek.datasource
This class is not as generic as the name may indicate.
EcogridDataCacheItem() - Constructor for class org.ecoinformatics.seek.datasource.EcogridDataCacheItem
Default constructor
EcoGridException - Exception in org.ecoinformatics.seek.ecogrid.exception
Exception for search namespace is null
EcoGridException(String) - Constructor for exception org.ecoinformatics.seek.ecogrid.exception.EcoGridException
 
EcogridGZippedDataCacheItem - Class in org.ecoinformatics.seek.datasource
This class reprents a gzipped cache item, it will run gunzip to uncompressed this data object
EcogridGZippedDataCacheItem() - Constructor for class org.ecoinformatics.seek.datasource.EcogridGZippedDataCacheItem
Default constructor for this object
EcogridGZippedDataCacheItem(boolean) - Constructor for class org.ecoinformatics.seek.datasource.EcogridGZippedDataCacheItem
Constructor
EcogridMetaDataCacheItem - Class in org.ecoinformatics.seek.datasource
 
EcogridMetaDataCacheItem() - Constructor for class org.ecoinformatics.seek.datasource.EcogridMetaDataCacheItem
 
ECOGRIDPATH - Static variable in class org.ecoinformatics.seek.ecogrid.MetadataSpecificationInterface
Description of the Field
EcogridPreferencesTab - Class in org.ecoinformatics.seek.ecogrid
Class reprents a frame which will display a service panel
EcogridPreferencesTab() - Constructor for class org.ecoinformatics.seek.ecogrid.EcogridPreferencesTab
Constructor of the frame
EcogridPreferencesTab.Factory - Class in org.ecoinformatics.seek.ecogrid
A factory that creates the ServicesListModification panel for the PreferencesFrame.
EcogridQueryDataCacheItem - Class in org.ecoinformatics.seek.datasource
This class is not as generic as the name may indicate.
EcogridQueryDataCacheItem() - Constructor for class org.ecoinformatics.seek.datasource.EcogridQueryDataCacheItem
 
EcogridRepository - Class in org.kepler.objectmanager.repository
This class represents an ecogrid repository
EcogridRepository(String, String, String, String, String, String, String, String, String, String, String, String) - Constructor for class org.kepler.objectmanager.repository.EcogridRepository
 
EcogridRepository.RegistryClientContainer - Class in org.kepler.objectmanager.repository
a class to hold a registry client and a sessionid
EcogridRepositoryBootstrap - Class in org.kepler.objectmanager.repository
This class bootstraps an ecogrid repository.
EcogridRepositoryBootstrap() - Constructor for class org.kepler.objectmanager.repository.EcogridRepositoryBootstrap
Constructor
EcogridRepositoryKARDownloadListener - Class in org.kepler.objectmanager.repository
This class represents a single result from a search of the ecogrid repository.
EcogridRepositoryKARDownloadListener() - Constructor for class org.kepler.objectmanager.repository.EcogridRepositoryKARDownloadListener
 
EcogridRepositoryLibrarySearcher - Class in org.kepler.objectmanager.repository
this abstract class is should be extended by all classes that provide a search engine for the actory library.
EcogridRepositoryLibrarySearcher(JTree, LibrarySearchPane, String) - Constructor for class org.kepler.objectmanager.repository.EcogridRepositoryLibrarySearcher
constructor
EcogridRepositoryLibrarySearcher.NondraggableTreeItem - Class in org.kepler.objectmanager.repository
 
EcogridRepositoryResults - Class in org.kepler.objectmanager.repository
This class represents a single result from a search of the ecogrid repository.
EcogridRepositoryResults(String, String, boolean) - Constructor for class org.kepler.objectmanager.repository.EcogridRepositoryResults
 
EcogridRepositoryResults(KarXml.KarEntry, String, int, String) - Constructor for class org.kepler.objectmanager.repository.EcogridRepositoryResults
 
EcogridRepositoryResults(ResultsetTypeRecord, String, boolean) - Constructor for class org.kepler.objectmanager.repository.EcogridRepositoryResults
default constructor
EcoGridService - Class in org.ecoinformatics.seek.ecogrid
This class represents a ecogrid service metadata
EcoGridService() - Constructor for class org.ecoinformatics.seek.ecogrid.EcoGridService
Default constructor
EcoGridService(EcoGridService) - Constructor for class org.ecoinformatics.seek.ecogrid.EcoGridService
Copy constructor
EcoGridServicesController - Class in org.ecoinformatics.seek.ecogrid
This class will control the current service user want to search: user can add, remove and update the service list
EcogridTarArchivedDataCacheItem - Class in org.ecoinformatics.seek.datasource
This class reprents a tar archive object.
EcogridTarArchivedDataCacheItem() - Constructor for class org.ecoinformatics.seek.datasource.EcogridTarArchivedDataCacheItem
Default constructor
EcogridTarArchivedDataCacheItem(boolean) - Constructor for class org.ecoinformatics.seek.datasource.EcogridTarArchivedDataCacheItem
Constructor if we need refresh it even the cache item already untared
EcogridWriter - Class in org.ecoinformatics.seek.ecogrid
The EcogridWriter actor writes a data file and the EML metadata describing that data file to a remote EcoGrid repositiory.
EcogridWriter(CompositeEntity, String) - Constructor for class org.ecoinformatics.seek.ecogrid.EcogridWriter
 
EcogridZippedDataCacheItem - Class in org.ecoinformatics.seek.datasource
This class represents a zip data object.
EcogridZippedDataCacheItem() - Constructor for class org.ecoinformatics.seek.datasource.EcogridZippedDataCacheItem
Default constructor
EcogridZippedDataCacheItem(boolean) - Constructor for class org.ecoinformatics.seek.datasource.EcogridZippedDataCacheItem
Constructor
Edge - Class in ptolemy.graph
A weighted or unweighted edge for a directed or undirected graph.
Edge(Node, Node) - Constructor for class ptolemy.graph.Edge
Construct an unweighted edge with a specified source node and sink node.
Edge(Node, Node, Object) - Constructor for class ptolemy.graph.Edge
Construct a weighted edge with a specified source node, sink node, and edge weight.
edge(Object) - Method in class ptolemy.graph.Graph
Return an edge in this graph that has a specified weight.
edge(int) - Method in class ptolemy.graph.Graph
Return an edge in this graph given the edge label; the returned edge may be hidden see Graph.hideEdge(Edge).
edgeCount() - Method in class ptolemy.graph.Graph
Return the total number of edges in this graph.
edgeExists(Node, Node) - Method in class ptolemy.graph.DirectedGraph
Test if an edge exists from one node to another.
edgeExists(Object, Object) - Method in class ptolemy.graph.DirectedGraph
Test whether an edge exists from one node weight to another.
edgeLabel(Edge) - Method in class ptolemy.graph.Graph
Return the edge label of the specified edge.
edgeLabel(Object) - Method in class ptolemy.graph.Graph
Return the edge label of the specified edge given the edge weight.
edges() - Method in interface ptolemy.graph.analysis.analyzer.SelfLoopAnalyzer
Return the self-loop edges in the graph under analysis.
edges() - Method in class ptolemy.graph.analysis.SelfLoopAnalysis
Return the self-loop edges in the graph under analysis.
edges() - Method in class ptolemy.graph.analysis.strategy.SelfLoopStrategy
Compute the self-loop edges in the graph in the form of a collection.
edges() - Method in class ptolemy.graph.Graph
Return all the edges in this graph in the form of a collection.
edges(Object) - Method in class ptolemy.graph.Graph
Return all the edges in this graph that have a specified weight.
edges(Collection) - Method in class ptolemy.graph.Graph
Return all the edges in this graph whose weights are contained in a specified collection.
edgeWeight(int) - Method in class ptolemy.graph.Graph
Return the weight of a given edge in the graph given the edge label.
Editable - Interface in ptolemy.actor.gui
This is an interface for objects that can create an editor for interactively configuring something.
EditableChoiceStyle - Class in ptolemy.actor.gui.style
This attribute annotates user settable attributes to specify an editable combobox style for configuring the containing attribute.
EditableChoiceStyle() - Constructor for class ptolemy.actor.gui.style.EditableChoiceStyle
Construct an attribute in the default workspace with an empty string as its name.
EditableChoiceStyle(NamedObj, String) - Constructor for class ptolemy.actor.gui.style.EditableChoiceStyle
Construct an attribute with the specified container and name.
EditableParametersDialog - Interface in ptolemy.gui
A marker interface for the ptolemy.actor.gui.EditParametersDialog.
EditablePlot - Class in ptolemy.plot
This extension of Plot permits interactive modification of plotted data, one dataset at a time.
EditablePlot() - Constructor for class ptolemy.plot.EditablePlot
Constructor.
EditablePlot.EditMouseListener - Class in ptolemy.plot
Listen for mouse button events.
EditablePlot.ModifyListener - Class in ptolemy.plot
Listen for mouse motion events.
EditablePlot.UndoListener - Class in ptolemy.plot
Control-Z is undo and Control-Y is redo.
EditablePlotMLApplet - Class in ptolemy.plot.plotml
This applet reads a URL giving a PlotML file for a plot and places the data into an editable plot.
EditablePlotMLApplet() - Constructor for class ptolemy.plot.plotml.EditablePlotMLApplet
 
EditablePlotMLApplication - Class in ptolemy.plot.plotml
An application that can plot data in PlotML format from a URL or from files specified on the command line, and can then permit the user to edit the plot.
EditablePlotMLApplication() - Constructor for class ptolemy.plot.plotml.EditablePlotMLApplication
Construct a plot with no command-line arguments.
EditablePlotMLApplication(String[]) - Constructor for class ptolemy.plot.plotml.EditablePlotMLApplication
Construct a plot with the specified command-line arguments.
EditablePlotMLApplication(EditablePlot, String[]) - Constructor for class ptolemy.plot.plotml.EditablePlotMLApplication
Construct a plot with the specified command-line arguments and instance of plot.
editCellAt(int, EventObject) - Method in class org.kepler.workflowrunmanager.gui.GroupableTableHeader
 
editComponent(ComponentDef, Component, CellConstraints) - Method in class org.mlc.swing.layout.FormEditor
 
editComponent(Component) - Method in class ptolemy.actor.gui.run.PtolemyFormEditor
Edit the component by presenting a dialog that infers the settable properties of the components.
editComponentDef(ComponentDef) - Method in class org.mlc.swing.layout.NewComponentDialog
 
editDataModified(EditablePlot, int) - Method in class ptolemy.actor.lib.gui.SketchedSource
React to the fact that data in the specified plot has been modified by a user edit action by recording the data.
editDataModified(EditablePlot, int) - Method in class ptolemy.domains.sdf.demo.Sketch.SketchApplet
Execute the model.
editDataModified(EditablePlot, int) - Method in interface ptolemy.plot.EditListener
Notify that data in the specified plot has been modified by a user edit action.
editDialog(JFrame, ComponentDef) - Static method in class org.mlc.swing.layout.NewComponentDialog
Creates and displays a dialog for editing a component's settings.
editDocumentation(Frame, Attribute, NamedObj) - Method in class org.kepler.gui.KeplerDocApplicationSpecializer
create a gui to edit the documentation in the attribute
editDocumentation(Frame, Attribute, NamedObj) - Method in interface ptolemy.vergil.actor.DocApplicationSpecializer
Create a gui to edit the documentation in the attribute.
EditIconAction - Class in ptolemy.vergil.toolbox
Action to edit a custom icon.
EditIconAction() - Constructor for class ptolemy.vergil.toolbox.EditIconAction
Create an action to edit an icon.
EditIconFrame - Class in ptolemy.vergil.icon
This is an icon editor frame for Ptolemy II models.
EditIconFrame(EditorIcon, Tableau) - Constructor for class ptolemy.vergil.icon.EditIconFrame
Construct a frame to edit the specified icon.
EditIconFrame(EditorIcon, Tableau, LibraryAttribute) - Constructor for class ptolemy.vergil.icon.EditIconFrame
Construct a frame to edit the specified icon.
EditIconGraphController - Class in ptolemy.vergil.icon
A graph controller for the Ptolemy II icon editor.
EditIconGraphController() - Constructor for class ptolemy.vergil.icon.EditIconGraphController
Create a new basic controller with default terminal and edge interactors and default context menus.
EditIconTableau - Class in ptolemy.vergil.icon
This is an icon editor for ptolemy models.
EditIconTableau(Workspace) - Constructor for class ptolemy.vergil.icon.EditIconTableau
Create a tableau in the specified workspace.
EditIconTableau(PtolemyEffigy, String) - Constructor for class ptolemy.vergil.icon.EditIconTableau
Create a tableau with the specified container and name, with no specified default library.
EditIconTableau(PtolemyEffigy, String, LibraryAttribute) - Constructor for class ptolemy.vergil.icon.EditIconTableau
Create a tableau with the specified container, name, and default library.
EditIconTableau.Factory - Class in ptolemy.vergil.icon
A factory that creates icon editing tableaux for Ptolemy models.
editingCanceled(ChangeEvent) - Method in class org.kepler.workflowrunmanager.gui.GroupableTableHeader
 
editingColumn - Variable in class org.kepler.workflowrunmanager.gui.GroupableTableHeader
 
editingStopped(ChangeEvent) - Method in class org.kepler.workflowrunmanager.gui.GroupableTableHeader
 
EditListener - Interface in ptolemy.plot
Interface for listeners that are informed of plot edit events.
editMerge() - Method in class org.kepler.sms.actors.MergeActor
 
EditMouseListener() - Constructor for class ptolemy.plot.EditablePlot.EditMouseListener
 
editorComp - Variable in class org.kepler.workflowrunmanager.gui.GroupableTableHeader
 
EditorDropTarget - Class in ptolemy.vergil.basic
This class provides drag-and-drop support.
EditorDropTarget() - Constructor for class ptolemy.vergil.basic.EditorDropTarget
Construct a new graph target to operate on the given JGraph.
EditorDropTarget(JGraph) - Constructor for class ptolemy.vergil.basic.EditorDropTarget
Construct a new graph target to operate on the given JGraph.
EditorDropTargetListener - Class in ptolemy.vergil.basic
A drop target listener that provides drag and drop for the Ptolemy editor.
EditorDropTargetListener() - Constructor for class ptolemy.vergil.basic.EditorDropTargetListener
 
EditorFactory - Class in ptolemy.actor.gui
This is an attribute that can create an editor for interactively configuring its container.
EditorFactory(NamedObj, String) - Constructor for class ptolemy.actor.gui.EditorFactory
Construct a factory with the specified container and name.
EditorIcon - Class in ptolemy.vergil.icon
An icon is the visual representation of an entity or attribute.
EditorIcon(Workspace, String) - Constructor for class ptolemy.vergil.icon.EditorIcon
Construct an icon in the specified workspace and name.
EditorIcon(NamedObj, String) - Constructor for class ptolemy.vergil.icon.EditorIcon
Create a new icon with the given name in the given container.
EditorPaneFactory - Class in ptolemy.actor.gui
This is an attribute that can create a pane (called a "configuration widget") for interactively configuring its container.
EditorPaneFactory(NamedObj, String) - Constructor for class ptolemy.actor.gui.EditorPaneFactory
Construct a factory with the specified container and name.
EditParametersDialog - Class in ptolemy.actor.gui
This class is a modal dialog box for editing the parameters of a target object, which is an instance of NamedObj.
EditParametersDialog(Frame, NamedObj) - Constructor for class ptolemy.actor.gui.EditParametersDialog
Construct a dialog with the specified owner and target.
EditParametersDialog(Frame, NamedObj, String) - Constructor for class ptolemy.actor.gui.EditParametersDialog
Construct a dialog with the specified owner and target.
EditPreferencesAction() - Constructor for class ptolemy.vergil.basic.BasicGraphFrame.EditPreferencesAction
 
Effigy - Class in ptolemy.actor.gui
An effigy represents model metadata, and is contained by the model directory or by another effigy.
Effigy(Workspace) - Constructor for class ptolemy.actor.gui.Effigy
Create a new effigy in the specified workspace with an empty string for its name.
Effigy(CompositeEntity, String) - Constructor for class ptolemy.actor.gui.Effigy
Construct an effigy with the given name and container.
EffigyFactory - Class in ptolemy.actor.gui
A configuration contains an instance of this class, and uses it to create effigies from a URL, or to create blank effigies of a particular kind.
EffigyFactory(Workspace) - Constructor for class ptolemy.actor.gui.EffigyFactory
Create a factory in the specified workspace.
EffigyFactory(CompositeEntity, String) - Constructor for class ptolemy.actor.gui.EffigyFactory
Create a factory with the given name and container.
elapsedTimeSinceStart() - Method in class ptolemy.actor.Director
Return the elapsed time (in milliseconds) since the start of execution of the model.
elapsedTimeSinceStart() - Method in class ptolemy.actor.Manager
Return the elapsed time (in milliseconds) since the start of execution of the model.
element(String, String) - Method in class org.kepler.reporting.rio.fop.tools.EasyGenerationContentHandlerProxy
Sends notifications for a whole element with some String content.
element(String, String, Attributes) - Method in class org.kepler.reporting.rio.fop.tools.EasyGenerationContentHandlerProxy
Sends notifications for a whole element with some String content.
element - Variable in class ptolemy.actor.lib.ArrayContains
The element to test for presence in the array.
element - Variable in class ptolemy.actor.lib.ArrayRemoveElement
The element to be removed.
element() - Method in class ptolemy.data.expr.MatrixParser
 
element() - Method in class ptolemy.data.expr.PtParser
 
Element - Class in ptolemy.graph
A base class for graph elements (nodes and edges).
Element() - Constructor for class ptolemy.graph.Element
Construct an unweighted element.
Element(Object) - Constructor for class ptolemy.graph.Element
Construct an element with a given weight.
element(Object) - Method in class ptolemy.graph.ElementList
Return an element in this list that has a specified weight.
elementAdd(Token) - Method in class ptolemy.data.ArrayToken
Add the given token to each element of this array.
elementDivide(Token) - Method in class ptolemy.data.ArrayToken
Divide each element of this array by the given token.
elementDump(Element, Graph) - Static method in exception ptolemy.graph.GraphException
Return a dump of a graph element and the container graph suitable to be appended to an error message.
elementList() - Method in class ptolemy.actor.AbstractReceiver
Return a list with tokens that are currently in the receiver available for get() or getArray().
elementList() - Method in class ptolemy.actor.IntermediateReceiver
Delegate to the internal receiver and return whatever it returns.
elementList() - Method in class ptolemy.actor.Mailbox
Return a list with the token currently in the receiver, or an empty list if there is no such token.
elementList() - Method in class ptolemy.actor.QueueReceiver
List the tokens in the receiver, beginning with the oldest.
elementList() - Method in interface ptolemy.actor.Receiver
Return a list with tokens that are currently in the receiver available for get() or getArray().
elementList() - Method in class ptolemy.actor.sched.FixedPointReceiver
Return a list with the token currently in the receiver, or an empty list if there is no such token.
elementList() - Method in class ptolemy.actor.util.FIFOQueue
List the objects in the queue, beginning with the oldest.
elementList() - Method in class ptolemy.actor.util.TotallyOrderedSet
Return a list of all the elements.
elementList() - Method in class ptolemy.domains.de.kernel.DEReceiver
Return a list with tokens that are currently in the receiver available for get() or getArray(), beginning with the oldest one.
elementList() - Method in class ptolemy.domains.modal.kernel.FSMReceiver
Return a list with the token currently in the receiver, or an empty list if there is no such token.
elementList() - Method in class ptolemy.domains.sdf.kernel.ArrayFIFOQueue
Return a list containing all the elements in the queue, beginning with the oldest.
elementList() - Method in class ptolemy.domains.sdf.kernel.SDFReceiver
Return a list with the tokens currently in the receiver, or an empty list if there are no such tokens.
ElementList - Class in ptolemy.graph
A list of graph elements.
ElementList(String, Graph) - Constructor for class ptolemy.graph.ElementList
Construct an empty element list.
ElementList(String, Graph, int) - Constructor for class ptolemy.graph.ElementList
Construct an empty element list with enough storage allocated for the specified number of elements.
elementList() - Method in class ptolemy.kernel.util.NamedList
Return an unmodifiable list with the contents of this named list.
elementModulo(Token) - Method in class ptolemy.data.ArrayToken
Modulo each element of this array by the given token.
elementMultiply(Token) - Method in class ptolemy.data.ArrayToken
Multiply each element of this array by the given token.
elementMultiplyReturnType(Type, Type) - Static method in class ptolemy.data.ArrayToken
Return the (exact) return type of the elementMultiply function above.
elements() - Method in class ptolemy.actor.QueueReceiver
Deprecated.
Used elementList() instead.
elements() - Method in class ptolemy.actor.util.FIFOQueue
Deprecated.
Used elementList() instead.
elements() - Method in class ptolemy.actor.util.TotallyOrderedSet
Deprecated.
Use elementList() instead.
elements() - Method in class ptolemy.domains.sdf.kernel.ArrayFIFOQueue
Enumerate the objects in the queue, beginning with the oldest.
elements() - Method in class ptolemy.graph.ElementList
Return all the elements in this list in the form of an unmodifiable collection.
elements(Object) - Method in class ptolemy.graph.ElementList
Return all the elements in this graph that have a specified weight.
elements() - Method in class ptolemy.kernel.util.NamedList
Deprecated.
Use elementList() instead.
elementsExpressionFile - Variable in class org.ROADnet.OrbLogger
 
ElementsToArray - Class in ptolemy.actor.lib
On each firing, this actor reads exactly one token from each channel of the input port and assembles the tokens into an ArrayToken.
ElementsToArray(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.ElementsToArray
Construct an actor with the given container and name.
elementSubtract(Token) - Method in class ptolemy.data.ArrayToken
Subtract the given token from each element of this array.
elementType(Typeable) - Static method in class ptolemy.data.type.ArrayType
Return a type constraint that can be used to constrain another typeable object to have a type related to the element type of the specified typeable.
elementValue(Element) - Static method in class org.sdm.spa.XMLUtil
Return the text (node value) of the first node under this, works best if normalized.
elevation - Variable in class org.kepler.gis.actor.landscape.CreateLandscape
Elevation raster (required).
eliminateDuplicates - Variable in class ptolemy.actor.lib.OrderedMerge
If true, eliminate duplicate tokens in the output stream.
EllipseAttribute - Class in ptolemy.vergil.kernel.attributes
This is an attribute that is rendered as an ellipse.
EllipseAttribute(NamedObj, String) - Constructor for class ptolemy.vergil.kernel.attributes.EllipseAttribute
Construct an attribute with the given name contained by the specified container.
ellipsis(String, int) - Static method in class ptolemy.util.StringUtilities
Return a string with a maximum line length of length characters, limited to the given number of characters.
ELLIPSIS_LENGTH_LONG - Static variable in class ptolemy.util.StringUtilities
Maximum length in characters of a long string before StringUtilities.ellipsis(String, int) truncates and add a trailing ". . .".
ELLIPSIS_LENGTH_SHORT - Static variable in class ptolemy.util.StringUtilities
Maximum length in characters of a short string before StringUtilities.ellipsis(String, int) truncates and add a trailing ". . .".
Email - Class in org.sdm.spa
Email actor is a notification actor that allows communication with the user via email especially from the remote execution of the long-runing workflows.
Email(CompositeEntity, String) - Constructor for class org.sdm.spa.Email
Construct an Email actor with the given container and name.
EMBEDDED_METADATA - Static variable in class org.kepler.dataproxy.datasource.opendap.OpendapDataSource
 
emit(StringBuffer, DSTableFieldIFace) - Static method in class org.ecoinformatics.seek.querybuilder.DBSchemaParserEmitter
Generate XML for a field schema
emitXML(DBQueryDef) - Static method in class org.ecoinformatics.seek.querybuilder.DBQueryDefParserEmitter
Creates the XML that represents a query
emitXML(DSSchemaIFace) - Static method in class org.ecoinformatics.seek.querybuilder.DBSchemaParserEmitter
Generate XML for the schema
EML - Static variable in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200Parser
 
Eml200DataOutputFormatInitialize - Class in org.ecoinformatics.seek.datasource.eml.eml2
This class initializes the data format and will be called in Eml200DataSource constuctor.
Eml200DataSource - Class in org.ecoinformatics.seek.datasource.eml.eml2
The Eml200DataSource is used to gain access to a wide variety of data packages that have been described using Ecological Metadata Language (EML).
Eml200DataSource(CompositeEntity, String) - Constructor for class org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource
Construct an actor with the given container and name.
EML200NAMESPACE - Static variable in class org.ecoinformatics.seek.datasource.eml.eml2.EML2MetadataSpecification
 
Eml200Parser - Class in org.ecoinformatics.seek.datasource.eml.eml2
This plugin parses EML 2.0.0 metadata files
Eml200Parser() - Constructor for class org.ecoinformatics.seek.datasource.eml.eml2.Eml200Parser
 
EML201MetadataSpecification - Class in org.ecoinformatics.seek.datasource.eml.eml2
This class is a plugin for eml200 namespace to transfer query group to ecogrid query type.
EML201MetadataSpecification() - Constructor for class org.ecoinformatics.seek.datasource.eml.eml2.EML201MetadataSpecification
Default constructor
EML201NAMESPACE - Static variable in class org.ecoinformatics.seek.datasource.eml.eml2.EML201MetadataSpecification
 
EML210MetadataSpecification - Class in org.ecoinformatics.seek.datasource.eml.eml2
This class is a plugin for eml210 namespace to transfer query group to ecogrid query type.
EML210MetadataSpecification() - Constructor for class org.ecoinformatics.seek.datasource.eml.eml2.EML210MetadataSpecification
Default constructor
EML210NAMESPACE - Static variable in class org.ecoinformatics.seek.datasource.eml.eml2.EML210MetadataSpecification
 
EML211MetadataSpecification - Class in org.ecoinformatics.seek.datasource.eml.eml2
This class is a plugin for eml211 namespace to transfer query group to ecogrid query type.
EML211MetadataSpecification() - Constructor for class org.ecoinformatics.seek.datasource.eml.eml2.EML211MetadataSpecification
Default constructor
EML211NAMESPACE - Static variable in class org.ecoinformatics.seek.datasource.eml.eml2.EML211MetadataSpecification
 
EML2MetadataSpecification - Class in org.ecoinformatics.seek.datasource.eml.eml2
This class is a plugin for eml200 namespace to transfer query group to ecogrid query type.
EML2MetadataSpecification() - Constructor for class org.ecoinformatics.seek.datasource.eml.eml2.EML2MetadataSpecification
Default constructor
emlFilePath - Variable in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource
The file path for locating an EML file that is available from a local file.
EMPTY - Static variable in class ptolemy.data.ActorToken
Empty Entity instance of this token.
EMPTY_ATTS - Static variable in class org.kepler.reporting.rio.fop.tools.EasyGenerationContentHandlerProxy
An empty Attributes object used when no attributes are needed.
EMPTY_BORDER - Static variable in class com.jgoodies.forms.factories.Borders
A prepared and reusable EmptyBorder without gaps.
EMPTY_RECORD - Static variable in class ptolemy.data.RecordToken
Empty Record.
EMPTY_RECORD - Static variable in class ptolemy.data.type.RecordType
An empty record.
emptyArray(Token) - Static method in class ptolemy.data.expr.UtilityFunctions
Return an empty array with its element type matching the specified token.
emptyArrayReturnType(Type) - Static method in class ptolemy.data.expr.UtilityFunctions
Return the type of an empty array of unspecified length.
EmptyEntityLibrary - Class in org.kepler.moml
A convenience class to determine the different types of EntityLibraries in the trees for assigning icons.
EmptyEntityLibrary() - Constructor for class org.kepler.moml.EmptyEntityLibrary
 
EmptyEntityLibrary(Workspace) - Constructor for class org.kepler.moml.EmptyEntityLibrary
 
EmptyEntityLibrary(CompositeEntity, String) - Constructor for class org.kepler.moml.EmptyEntityLibrary
 
emptyRecord() - Static method in class ptolemy.data.expr.UtilityFunctions
Return an empty record.
emptyTagField() - Method in class org.kepler.tagging.gui.AutoCompleteComboBox
 
ENABLE - Static variable in interface org.ecoinformatics.seek.ecogrid.SelectableObjectInterface
 
enable - Variable in class ptolemy.actor.ExecutionAttributes
The enable parameter specifies whether the decorated actor uses the resource scheduler decorator.
enable - Variable in class ptolemy.actor.lib.Sequence
The enable input port.
enable_tracing() - Method in class ptolemy.data.expr.MatrixParser
Enable tracing.
enable_tracing() - Method in class ptolemy.data.expr.PtParser
Enable tracing.
enable_tracing() - Method in class ptolemy.moml.unit.UParser
Enable tracing.
enableCaching() - Method in class ptolemy.graph.analysis.strategy.CachedStrategy
Enable caching.
ENABLED - Static variable in class org.kepler.workflowscheduler.gui.ScheduleTableModel
 
enabled() - Method in class ptolemy.actor.ExecutionAttributes
Return whether the decorator associated with this attribute is enabled.
ENABLED_DEFERRABLE - Static variable in class ptolemy.domains.ddf.kernel.ActorEnablingStatus
This final static member indicates an actor is enabled but deferrable.
ENABLED_NOT_DEFERRABLE - Static variable in class ptolemy.domains.ddf.kernel.ActorEnablingStatus
This final static member indicates an actor is enabled and not deferrable.
enableDataMarker - Variable in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Parameter specifying if markers should be drawn for data points.
enableDebugPreview(boolean) - Method in class org.mlc.swing.layout.LayoutFrame
Activate "debug" version of preview frame.
enabledTransitions(List, boolean, boolean) - Method in class ptolemy.domains.modal.kernel.FSMActor
Return a list of enabled transitions among the given list of transitions.
enableErrorSkipping(boolean) - Method in class ptolemy.actor.gui.ConfigurationApplication.IgnoreErrorHandler
Enable or disable skipping of errors.
enableErrorSkipping(boolean) - Method in interface ptolemy.moml.ErrorHandler
Enable or disable skipping of errors.
enableErrorSkipping(boolean) - Method in class ptolemy.moml.SimpleErrorHandler
Enable or disable skipping of errors.
enableErrorSkipping(boolean) - Method in class ptolemy.moml.StreamErrorHandler
Enable or disable skipping of errors.
enableErrorSkipping(boolean) - Method in class ptolemy.moml.test.RecorderErrorHandler
Enable or disable skipping of errors.
enableErrorSkipping(boolean) - Method in class ptolemy.vergil.VergilErrorHandler
Enable or disable skipping of errors.
enableEventsMarker - Variable in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Parameter specifying if markers should be drawn for event points.
enableHttps() - Static method in class org.kepler.webview.server.WebViewConfiguration
Returns true if the http server should use ssl.
enableHttpServerTableOfContents() - Static method in class org.kepler.webview.server.WebViewConfiguration
Returns true if the http server table of contents should be enabled.
enableLegend - Variable in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Parameter specifying if the legend should be shown on the figure.
enablePrintTimeAndMemory(boolean) - Method in class ptolemy.actor.Manager
Enable or disable printing time and memory usage at the end of model execution.
enableSchedule(Schedule) - Method in class org.kepler.workflowscheduler.gui.ExistingSchedulePanel
Handle the event that a schedule will be enabled Note: this method will handle the table which displays existing schedules.
enableSchedule(Schedule) - Method in class org.kepler.workflowscheduler.gui.ScheduleChangeController
Handle the event that a schedule will be enabled
enableSchedule(Schedule) - Method in interface org.kepler.workflowscheduler.gui.ScheduleChangeListenerInterface
Handle the event that a schedule will be enabled
enableSchedule(Schedule) - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerDialog
Handle the event that a schedule will be enabled
enableSchedule(Schedule) - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerParentPanel
Method for ScheduleChangeListener.
EnableScheduleAction - Class in org.kepler.workflowscheduler.gui
Represents an action to enable a schedule in a scheduler server.
EnableScheduleAction(TableauFrame, WorkflowSchedulerParentPanel, ScheduleChangeController) - Constructor for class org.kepler.workflowscheduler.gui.EnableScheduleAction
Constructor
enableTreeSelection() - Method in class org.kepler.workflowscheduler.gui.ScheduleChangeController
Enable selecting a node from tree
encloseInputPortName - Variable in class org.sdm.spa.XMLAssembler
If true, then each token received will be added to an element with the name of the input port.
end() - Method in class org.json.JSONTokener
 
end - Variable in class org.kepler.profiling.gui.ExecutionMonitorPanel.ActorInfo
The timestamp that execution end.
END - Static variable in class ptolemy.vergil.basic.export.web.WebElement
Special constant indicating to put content in a div with the name "end" which occurs at the end of the HTML body.
endArray() - Method in class org.json.JSONWriter
End an array.
endColumn - Variable in class ptolemy.data.expr.Token
The column number of the last character of this Token.
endColumn - Variable in class ptolemy.moml.unit.Token
The column number of the last character of this Token.
endCompoundEdit() - Method in class ptolemy.gui.UndoListener
End a compound edit.
endDocument(int) - Method in class com.microstar.xml.demo.DtdDemo
Print a comment showing where the DTD (if any) ends.
endDocument() - Method in class com.microstar.xml.demo.EventDemo
Handle the end of the document by printing an event.
endDocument() - Method in class com.microstar.xml.demo.XmlApp
Handle the end the document.
endDocument() - Method in class com.microstar.xml.demo.XmlApplet
Handle the end the document.
endDocument() - Method in class com.microstar.xml.driver.SAXDriver
Implement com.microstar.xml.XmlHandler#endDocument.
endDocument() - Method in class com.microstar.xml.HandlerBase
Handle the end of the document.
endDocument() - Method in interface com.microstar.xml.XmlHandler
End the document.
endDocument() - Method in class org.kepler.reporting.rio.fop.tools.EasyGenerationContentHandlerProxy
 
endDocument() - Method in class ptolemy.configs.test.ValidatingXMLParser
 
endDocument() - Method in class ptolemy.moml.MoMLParser
End the document.
endDocument() - Method in class ptolemy.plot.plotml.PlotBoxMLParser
End the document.
endDocument() - Method in class ptolemy.vergil.actor.DocManager
End the document.
endElement(String) - Method in class com.microstar.xml.demo.EventDemo
Handle the end of an element by printing an event.
endElement(String) - Method in class com.microstar.xml.demo.XmlApp
Handle the end of an element.
endElement(String) - Method in class com.microstar.xml.demo.XmlApplet
Handle the end of an element.
endElement(String) - Method in class com.microstar.xml.driver.SAXDriver
Implement com.microstar.xml.XmlHandler#endElement.
endElement(String) - Method in class com.microstar.xml.HandlerBase
Handle the end of an element.
endElement(String) - Method in interface com.microstar.xml.XmlHandler
End an element.
endElement(String) - Method in class org.kepler.reporting.rio.fop.tools.EasyGenerationContentHandlerProxy
Send the notification of the end of an element.
endElement(String, String, String) - Method in class org.kepler.reporting.rio.fop.tools.EasyGenerationContentHandlerProxy
 
endElement(String, String, String) - Method in class org.kepler.workflowscheduler.gui.QueryingSchedulerServerResultParser
SAX Handler that is called at the end of each XML element
endElement(String, String, String) - Method in class org.kepler.workflowscheduler.gui.ServerTimeZoneIDParser
SAX Handler that is called at the end of each XML element
endElement(String, String, String) - Method in class ptolemy.configs.test.ValidatingXMLParser
 
endElement(String) - Method in class ptolemy.moml.MoMLParser
End an element.
endElement(String) - Method in class ptolemy.plot.plotml.HistogramMLParser
End an element.
endElement(String) - Method in class ptolemy.plot.plotml.PlotBoxMLParser
End an element.
endElement(String) - Method in class ptolemy.plot.plotml.PlotMLParser
End an element.
endElement(String) - Method in class ptolemy.vergil.actor.DocManager
End an element.
endExternalEntity(String) - Method in class com.microstar.xml.demo.EventDemo
 
endExternalEntity(String) - Method in class com.microstar.xml.demo.XmlApp
 
endExternalEntity(String) - Method in class com.microstar.xml.demo.XmlApplet
 
endExternalEntity(String) - Method in class com.microstar.xml.driver.SAXDriver
Implement com.microstar.xml.XmlHandler#endExternalEntity.
endExternalEntity(String) - Method in class com.microstar.xml.HandlerBase
Handle the end of an external entity.
endExternalEntity(String) - Method in interface com.microstar.xml.XmlHandler
End an external entity.
endExternalEntity(String) - Method in class ptolemy.moml.MoMLParser
Handle the end of an external entity.
endFrame - Variable in class ptolemy.domains.sdf.lib.vq.ImageSequence
The ending frame number.
endHour - Variable in class org.kepler.gis.actor.farsite.GenerateWindFile
The end hour and minutes, e.g., 1845.
endIndex - Variable in class ptolemy.actor.lib.ArrayPeakSearch
The end point of the search.
endLine - Variable in class ptolemy.data.expr.Token
The line number of the last character of this Token.
endLine - Variable in class ptolemy.moml.unit.Token
The line number of the last character of this Token.
endObject() - Method in class org.json.JSONWriter
End an object.
endOfFile - Variable in class org.geon.BinaryFileReader
An output port that produces false until the end of file is reached, at which point it produces true.
endOfFile - Variable in class org.srb.SRBReader
End of file when reached, outputs true
endOfFile - Variable in class ptolemy.actor.lib.io.LineReader
An output port that produces false until the end of file is reached, at which point it produces true.
endOfLineCharacter - Variable in class ptolemy.actor.lib.io.LineWriter
End of line character to use.
endOfLoop - Variable in class org.sdm.spa.EnumItemTriggered
 
endOfTokenCharacter - Variable in class org.kepler.hadoop.actor.HDFSWriter
End of token to use.
ENDPOINT - Static variable in class org.ecoinformatics.seek.ecogrid.MetadataSpecificationInterface
Description of the Field
ENDPOINT - Static variable in interface org.kepler.dataproxy.datasource.DataSourceInterface
 
ENDPOINT_ATTR - Static variable in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreDataSource
 
endPrefixMapping(String) - Method in class org.kepler.reporting.rio.fop.tools.EasyGenerationContentHandlerProxy
 
endsWith - Variable in class ptolemy.actor.lib.URLDirectoryReader
Deprecated.
If non-null and non-empty, then only output file names and sub directories that end with this String value.
endText - Variable in class ptolemy.vergil.basic.export.web.IconScript
Text to insert in the end section of the web page.
enforceArrayLength - Variable in class ptolemy.domains.sdf.lib.ArrayToSequence
If true, then enforce the arrayLength parameter by throwing an exception if it is violated.
enforceMatrixSize - Variable in class ptolemy.domains.sdf.lib.MatrixToSequence
If true, then enforce the rows and columns parameters by throwing an exception if it is violated.
enforceMicrostepSemantics - Variable in class ptolemy.domains.de.kernel.DEDirector
A flag indicating whether this director should enforce microstep semantics, throwing an exception when actors deliver events at microstep 0.
engine - Variable in class org.kepler.ddp.director.DDPDirector
The execution engine.
Engine - Class in ptolemy.matlab
Provides a java API to the matlab environment.
Engine() - Constructor for class ptolemy.matlab.Engine
Construct an instance of the matlab engine interface.
Engine.ConversionParameters - Class in ptolemy.matlab
ENMPCPFrame - Class in org.kepler.gis.display
Name: ENMPCPFrame.java Purpose:Given an XML string that representing GARP presaming result,it retrieves lat/lon info and the environmental data for each sample and display a PCP panel for interactive explore high-dimensional data.
ENMPCPFrame(String) - Constructor for class org.kepler.gis.display.ENMPCPFrame
Constructor for the ENMPCPFrame object
ENMPCPVisualizer - Class in org.kepler.gis.display
Name: ENMPCPVisualizer.java Purpose:The actor serves as a proxy to invoke a PCP plot window to display GARP presampling results.
ENMPCPVisualizer(CompositeEntity, String) - Constructor for class org.kepler.gis.display.ENMPCPVisualizer
Constructor for the ENMPCPVisualizer object
enough_tasks - Variable in class org.eol.WmsdActor
 
EnsembleActor - Class in org.kepler.data.conversion.binary
 
EnsembleActor(CompositeEntity, String) - Constructor for class org.kepler.data.conversion.binary.EnsembleActor
Construct a RBNBToKepler2 source with the given container and name.
entity - Static variable in class org.json.XMLTokener
The table of entity values.
Entity - Class in org.kepler.objectmanager.data.db
This object represents an TableEntity.
Entity(String, String, String, Boolean, String, int) - Constructor for class org.kepler.objectmanager.data.db.Entity
construct this object with some extra parameters
Entity(String, String, String, AttributeList) - Constructor for class org.kepler.objectmanager.data.db.Entity
Construct a TableEntity, setting the list of attributes.
Entity<T extends Port> - Class in ptolemy.kernel
An Entity is a vertex in a generalized graph.
Entity() - Constructor for class ptolemy.kernel.Entity
Construct an entity in the default workspace with an empty string as its name.
Entity(String) - Constructor for class ptolemy.kernel.Entity
Construct an entity in the default workspace with the given name.
Entity(Workspace) - Constructor for class ptolemy.kernel.Entity
Construct an entity in the given workspace with an empty string as a name.
Entity(Workspace, String) - Constructor for class ptolemy.kernel.Entity
Construct an entity in the given workspace with the given name.
Entity.ContainedObjectsIterator - Class in ptolemy.kernel
This class is an iterator over all the contained objects (all instances of NamedObj).
ENTITY_INTERNAL - Static variable in class com.microstar.xml.XmlParser
Constant: the entity is internal.
ENTITY_NDATA - Static variable in class com.microstar.xml.XmlParser
Constant: the entity is external, non-XML data.
ENTITY_TEXT - Static variable in class com.microstar.xml.XmlParser
Constant: the entity is external XML data.
ENTITY_UNDECLARED - Static variable in class com.microstar.xml.XmlParser
Constant: the entity has not been declared.
EntityLayout() - Constructor for class ptolemy.vergil.actor.ActorViewerGraphController.EntityLayout
Create a new layout manager.
EntityLibrary - Class in ptolemy.moml
This class provides a hierarchical library of components specified in MoML.
EntityLibrary() - Constructor for class ptolemy.moml.EntityLibrary
Construct a library in the default workspace with no container and an empty string as its name.
EntityLibrary(Workspace) - Constructor for class ptolemy.moml.EntityLibrary
Construct a library in the specified workspace with no container and an empty string as a name.
EntityLibrary(CompositeEntity, String) - Constructor for class ptolemy.moml.EntityLibrary
Construct a library with the given container and name.
entityList() - Method in class org.kepler.ddp.actor.pattern.SingleInputPatternActor
List the opaque entities that are directly or indirectly contained by this entity.
entityList() - Method in class ptolemy.actor.LazyTypedCompositeActor
List the contained entities in the order they were added (using their setContainer() method).
entityList(Class) - Method in class ptolemy.actor.LazyTypedCompositeActor
Return a list of the component entities contained by this object that are instances of the specified Java class.
entityList() - Method in class ptolemy.kernel.CompositeEntity
List the contained entities in the order they were added (using their setContainer() method).
entityList(Class<T>) - Method in class ptolemy.kernel.CompositeEntity
Return a list of the component entities contained by this object that are instances of the specified Java class.
entityList() - Method in class ptolemy.moml.EntityLibrary
List the contained entities in the order they were added (using their setContainer() method).
entityName - Variable in class ptolemy.actor.gui.LevelSkippingTableauFactory
The name of the contained entity to open, or an empty string to just open the first one found.
entityName - Variable in class ptolemy.vergil.icon.AttributeValueIcon
Name of the entity contained by the container whose attribute this icon will display.
EntityPortRenderer() - Constructor for class ptolemy.vergil.actor.IOPortController.EntityPortRenderer
 
EntityResolver() - Constructor for class ptolemy.data.expr.XMLParser.EntityResolver
 
EntityTreeModel - Class in ptolemy.vergil.tree
A tree model for Ptolemy II objects.
EntityTreeModel(NamedObj) - Constructor for class ptolemy.vergil.tree.EntityTreeModel
Create a new tree model with the specified root.
EntityTreeModel.TreeUpdateListener - Class in ptolemy.vergil.tree
A ChangeListener that updates the Tree.
entropy(double[]) - Static method in class ptolemy.math.DoubleArrayStat
Given an array of probabilities, treated as a probability mass function (pmf), calculate the entropy (in bits).
entryName - Variable in class org.kepler.spark.mllib.KMeansClustering
Name, or ID, for the dataframe being processed
entryName - Variable in class org.kepler.spark.mllib.Standardize
User-specified entry name (i.e.
entryNameCol - Variable in class org.kepler.spark.mllib.KMeansApply
Name of entry name column in input dataframe
entryNameCol - Variable in class org.kepler.spark.mllib.KMeansClustering
Name of the entry name column
entryNameCol - Variable in class org.kepler.spark.mllib.SantaAnaDetect
Name of the entry name column in the input dataframe
entryNameCol - Variable in class org.kepler.spark.mllib.Standardize
Name of column containing entry name
entryNameCol - Variable in class org.kepler.spark.mllib.StandardizeApply
Name of entry name column
EnumeratedDomain - Class in org.kepler.objectmanager.data
 
EnumeratedDomain() - Constructor for class org.kepler.objectmanager.data.EnumeratedDomain
Constructor for this domain
EnumItemTriggered - Class in org.sdm.spa
This Actor will extract items from an XML document. for now it will only extract the first item.
EnumItemTriggered(CompositeEntity, String) - Constructor for class org.sdm.spa.EnumItemTriggered
Construct a constant source with the given container and name.
envelope - Variable in class org.sdm.spa.CreateRequestFromResult
 
environment - Variable in class org.sdm.spa.CommandLineExec
 
environment - Variable in class ptolemy.actor.lib.Exec
The environment in which to execute the command.
EOF - Static variable in interface ptolemy.data.expr.MatrixParserConstants
End of File.
EOF - Static variable in interface ptolemy.data.expr.PtParserConstants
End of File.
EOF - Static variable in interface ptolemy.moml.unit.UParserConstants
End of File.
eol - Variable in exception ptolemy.data.expr.ParseException
The end of line string for this machine.
eol - Variable in exception ptolemy.moml.unit.ParseException
The end of line string for this machine.
EPSGraphics - Class in ptolemy.plot
Graphics class supporting EPS export from plots.
EPSGraphics(OutputStream, int, int) - Constructor for class ptolemy.plot.EPSGraphics
Constructor for a graphics object that writes encapsulated PostScript to the specified output stream.
EPSILON - Static variable in class ptolemy.math.Complex
A small number ( = 1.0e-9).
EPSILON - Static variable in class ptolemy.math.SignalProcessing
A small number ( = 1.0e-9).
epsilonClosure(State) - Method in class ptolemy.domains.modal.kernel.ia.InterfaceAutomaton
Return the epsilon-closure of the specified state.
EQ - Static variable in class org.json.XML
The Character '='.
EQUAL_INEQUAL - Static variable in class ptolemy.domains.modal.kernel.RelationType
Relation type a relation node that is evaluated to be true while the relation operation is not equal or inequal.
EQUALDELIMITER - Static variable in class org.camera.service.ServiceUtils
 
EQUALDELIMITER - Static variable in class org.kepler.actor.rest.ServiceUtils
 
equals(Object) - Method in class com.jgoodies.forms.layout.ConstantSize
Indicates whether some other ConstantSize is "equal to" this one.
equals(Object) - Method in class org.geon.DBConnectionToken
Return true if the argument is an instance of DBConnectionToken and its contained object is equal to the object contained in this token, as tested by the equals() method of the contained object.
equals(ConfigurationNamespace) - Method in class org.kepler.configuration.ConfigurationNamespace
return true if this namespace is equal to the parameterized namespace
equals(Object) - Method in class org.kepler.module.cloudsharing.Initialize
 
equals(Object) - Method in class org.kepler.module.provenance.Initialize
 
equals(Object) - Method in class org.kepler.moml.DependencyAttribute
Description of the Method
equals(Object) - Method in class org.kepler.moml.NamedObjId
Description of the Method
equals(Object) - Method in class org.kepler.moml.PortAttribute
Description of the Method
equals(Object) - Method in class org.kepler.objectmanager.cache.LocalRepositoryManager.LocalRepository
Returns true iff the given object is a LocalRepository containing the same directories this LocalRepository.
equals(DataObjectDescription) - Method in class org.kepler.objectmanager.data.DataObjectDescription
returns true if all of the fields of didesc are equal to the fields of this object.
equals(Object) - Method in class org.kepler.objectmanager.lsid.KeplerLSID
return true if this lsid equals the passed in lsid regardless of anchor
equals(Object) - Method in class org.kepler.sms.actors.SimpleMergeMapping
 
equals(Object) - Method in class org.kepler.sms.KeplerIOPortReference
References are equal when they refer to the same port.
equals(Object) - Method in class org.kepler.sms.KeplerVirtualIOPortReference
References are equal when they refer to the same port.
equals(Object) - Method in class org.kepler.sms.NamedOntClass
 
equals(Object) - Method in class org.kepler.sms.NamedOntModel
 
equals(Object) - Method in class org.kepler.sms.NamedOntProperty
 
equals(Object) - Method in class org.kepler.sms.SemanticProperty
Description of the Method
equals(Object) - Method in class org.kepler.sms.SemanticType
Description of the Method
equals(Object) - Method in class org.kepler.sms.SemanticTypeDefinition
Description of the Method
equals(Object) - Method in class org.kepler.sms.SemanticTypeManager
Check if the given manager is equivalent to this manager.
equals(Object) - Method in class org.kepler.spark.type.RecordValue
 
equals(Object) - Method in class org.kepler.stratosphere.type.ByteArray
 
equals(Object) - Method in class org.kepler.tagging.gui.CBItems.ExistingConceptCBItem
 
equals(Object) - Method in class org.kepler.tagging.gui.DeletableColorIconLabel
 
equals(Object) - Method in class org.kepler.tagging.Range
 
equals(Range, Range) - Method in class org.kepler.tagging.Transition
 
equals(Object) - Method in class org.kepler.tagging.WindowIdentifier
 
equals(LocalRemoteWorkflowMap) - Method in class org.kepler.workflowscheduler.gui.LocalRemoteWorkflowMap
Test if two maps equal
equals(Object) - Method in class org.ptolemy.commons.ThreeDigitVersionSpecification
Return true of the argument is equal to this object.
equals(Object) - Method in class org.sdm.spa.actors.piw.viz.Sequence
 
equals(Object) - Method in class org.sdm.spa.actors.piw.viz.TranscriptionFactorBindingSite
 
equals(Object) - Method in class org.sdm.spa.WebServiceStub
Deprecated.
Given a WebServiceStub, outputs if that actor is same with the current one.
Equals - Class in ptolemy.actor.lib.logic
A logical equals operator.
Equals(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.logic.Equals
Construct an actor in the specified container with the specified name.
equals(Object) - Method in class ptolemy.actor.util.BooleanDependency
Return true if the value of this dependency equals that of the specified one, and the specified one is an instance of RealDependency.
EQUALS - Static variable in interface ptolemy.actor.util.Dependency
Return value of compareTo() if this is equal to the argument.
equals(Object) - Method in class ptolemy.actor.util.RealDependency
Return true if the value of this dependency equals that of the specified one, and the specified one is an instance of RealDependency.
equals(Object) - Method in class ptolemy.actor.util.SuperdenseDependency
Return true if the value of this dependency equals that of the specified one, and the specified one is an instance of RealDependency.
equals(Object) - Method in class ptolemy.actor.util.SuperdenseTime
Return true if this SuperdenseTime object has the same timestamp and index as that of the given SuperdenseTime object.
equals(Object) - Method in class ptolemy.actor.util.Time
Return true if this time object has the same time value as that of the given time object.
equals(Object) - Method in class ptolemy.actor.util.TimedEvent
Return true if this TimedEvent object has the same timeStamp and eventObject as the given TimedEvent object.
equals(Object) - Method in class ptolemy.data.ArrayToken
Return true if the class of the argument is ArrayToken and of the same length and the elements are equal to that of this token.
equals(Object) - Method in class ptolemy.data.BooleanMatrixToken
Return true if the argument is an instance of BooleanMatrixToken of the same dimensions and the corresponding elements of the matrices are equal.
equals(Object) - Method in class ptolemy.data.BooleanToken
Return true if the argument's class is BooleanToken and it has the same values as this token.
equals(Object) - Method in class ptolemy.data.ComplexMatrixToken
Return true if the argument is an instance of ComplexMatrixToken of the same dimensions and the corresponding elements of the matrices are equal.
equals(Object) - Method in class ptolemy.data.ComplexToken
Return true if the argument's class is IntToken and it has the same values as this token.
equals(Object) - Method in class ptolemy.data.DoubleMatrixToken
Return true if the argument is an instance of DoubleMatrixToken of the same dimensions and the corresponding elements of the matrices are equal.
equals(Object) - Method in class ptolemy.data.DoubleToken
Return true if the argument's class is DoubleToken and it has the same values as this token.
equals(Object) - Method in class ptolemy.data.EventToken
Override the base class method to check whether the value of this token is equal to that of the argument.
equals(Object) - Method in class ptolemy.data.expr.CachedMethod
Return true if the argument is an instance of CachedMethod that represents the same method or function as this instance.
EQUALS - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
equals(Object) - Method in class ptolemy.data.FixMatrixToken
Return true if the argument is an instance of FixMatrixToken of the same dimensions and the corresponding elements of the matrices are equal.
equals(Object) - Method in class ptolemy.data.FixToken
Return true if the argument's class is IntToken and it has the same values as this token.
equals(Object) - Method in class ptolemy.data.FloatToken
Return true if the argument's class is FloatToken and it has the same values as this token.
equals(Object) - Method in class ptolemy.data.IntMatrixToken
Return true if the argument is an instance of IntMatrixToken of the same dimensions and the corresponding elements of the matrices are equal.
equals(Object) - Method in class ptolemy.data.IntToken
Return true if the argument's class is IntToken and it has the same values as this token.
equals(Object) - Method in class ptolemy.data.LongMatrixToken
Return true if the argument is an instance of LongMatrixToken of the same dimensions and the corresponding elements of the matrices are equal.
equals(Object) - Method in class ptolemy.data.LongToken
Return true if the argument's class is LongToken and it has the same values as this token.
equals(Object) - Method in class ptolemy.data.ObjectToken
Return true if the argument is an instance of ObjectToken and its contained object is equal to the object contained in this token, as tested by the equals() method of the contained object.
equals(Object) - Method in class ptolemy.data.OrderedRecordToken
Return true if the class of the argument is RecordToken, and the argument has the same set of labels as this token and the corresponding fields are equal, as determined by the equals method of the contained tokens.
equals(Object) - Method in class ptolemy.data.PetiteToken
Return true if the argument's class is PetiteToken and it has the same values as this token.
equals(Object) - Method in class ptolemy.data.RecordToken
Return true if the class of the argument is RecordToken, and the argument has the same set of labels as this token and the corresponding fields are equal, as determined by the equals method of the contained tokens.
equals(Object) - Method in class ptolemy.data.ShortToken
Return true if the argument's class is ShortToken and it has the same values as this token.
equals(Object) - Method in class ptolemy.data.SmoothToken
Return true if the argument's class is SmoothToken and it has the same value and derivatives as this token.
equals(Object) - Method in class ptolemy.data.StringToken
Return true if the argument is an instance of StringToken with the same value.
equals(Object) - Method in class ptolemy.data.TupleToken
Return true if the class of the argument is TupleToken and it has the same length and the elements are equal to that of this token.
equals(Type) - Method in class ptolemy.data.type.ActorType
Determine if the argument represents the same BaseType as this object.
equals(Object) - Method in class ptolemy.data.type.ArrayType
Determine if the argument represents the same ArrayType as this object.
equals(Object) - Method in class ptolemy.data.type.BaseType
Determine if the argument represents the same BaseType as this object.
equals(Object) - Method in class ptolemy.data.type.FixType
Determine if the argument represents the same FixType as this object.
equals(Object) - Method in class ptolemy.data.type.FunctionType
Determine if the argument represents the same FunctionType as this object.
equals(Object) - Method in class ptolemy.data.type.MatrixType
Determine if the argument represents the same MatrixType as this object.
equals(Object) - Method in class ptolemy.data.type.ObjectType
Determine if the argument represents the same type as this object.
equals(Object) - Method in class ptolemy.data.type.RecordType
Determine if the argument represents the same RecordType as this object.
equals(Object) - Method in class ptolemy.data.type.TupleType
Determine if the argument represents the same TupleType as this object.
equals(Object) - Method in interface ptolemy.data.type.Type
Determine if the argument represents the same type as this object.
equals(Object) - Method in class ptolemy.data.type.TypeConstant
Override to return true if the type is the same in this object as the specified object.
equals(Object) - Method in class ptolemy.data.type.UnionType
Determine if the argument represents the same UnionType as this object.
equals(Object) - Method in class ptolemy.data.UnionToken
Return true if the argument is an UnionToken with the same label and value.
equals(Object) - Method in class ptolemy.data.UnsignedByteToken
Return true if the class of the argument is UnsignedByteToken, and it has the same value as this token.
equals(Object) - Method in class ptolemy.data.XMLToken
Return true if the argument is an instance of XMLToken with the same value.
equals(Object) - Method in class ptolemy.domains.de.kernel.DEEvent
Indicate whether some other object is equal to this DE Event.
equals(Object) - Method in class ptolemy.domains.modal.kernel.ia.StatePair
Override the base class method to return true if the specified object is an instance of StatePair and it contains the same states as this one.
equals(Object) - Method in class ptolemy.graph.Graph
Test if a graph is equal to this one.
equals(Object) - Method in class ptolemy.graph.Inequality
Return true if object named by the argument is equal to this Inequality object.
equals(Object) - Method in class ptolemy.graph.LabeledList
Compares the specified object with this list for equality.
equals(Object) - Method in class ptolemy.graph.mapping.MapMapping
Return true if the given object is of the same Class and based on the same Map as this one.
equals(Object) - Method in class ptolemy.kernel.attributes.RequireVersion
Return true if the hash code of this object is equal (==) to the hash code of the argument.
equals(Object) - Method in class ptolemy.kernel.attributes.VersionAttribute
Return true if the specified object is an instance of VersionAttribute and represents the same version as this one.
equals(Object) - Method in class ptolemy.math.Complex
Return true if the real and imaginary parts of this complex number are equal to those of the argument.
equals(Object) - Method in class ptolemy.math.FixPoint
Return true if this FixPoint is equal to the argument.
equals(Object) - Method in class ptolemy.math.FixPointQuantization
Return true if the given object describes the same mapping to quantized values as this object.
equals(Object) - Method in class ptolemy.math.Fraction
Compare this fraction with the given object.
equals(Fraction[], Fraction[]) - Static method in class ptolemy.math.FractionArrayMath
Returns true if the two input arrays have all elements equal.
equals(Object) - Method in class ptolemy.math.Overflow
Determine if the argument represents the same Overflow as this object.
equals(Object) - Method in class ptolemy.math.Precision
Return true if the indicated object is an instance of Precision and the precision format matches exactly.
equals(Object) - Method in class ptolemy.math.Quantization
Return true if the indicated object describes the same mapping to quantized values.
equals(Object) - Method in class ptolemy.math.Rounding
Determine if the argument represents the same Rounding as this object.
equals(Object) - Method in class ptolemy.moml.unit.Unit
Return True if this Unit equals another object
EQUALS - Static variable in interface ptolemy.moml.unit.UParserConstants
RegularExpression Id.
EQUALS_INX - Static variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIStd
 
equalsContents(ConfigurationProperty) - Method in class org.kepler.configuration.ConfigurationProperty
returns true if the property contents are identical to this one, ignoring: namespaces, modules, originmodules.
equalsWithAnchor(KeplerLSID) - Method in class org.kepler.objectmanager.lsid.KeplerLSID
return true if this lsid equals the passed in lsid and the anchors are the same.
equalsWithoutRevision(KeplerLSID) - Method in class org.kepler.objectmanager.lsid.KeplerLSID
return true if this lsid equals the passed in lsid regardless of revision or anchor
equalTo(Domain) - Method in class org.kepler.authentication.Domain
Compare to another domain to see if they are equal
Equation() - Method in class ptolemy.moml.unit.UParser
 
Equations() - Method in class ptolemy.moml.unit.UParser
 
EquationVisitor - Class in ptolemy.moml.unit
An Abstract class that specifies all the necessary aspects of visitors to a UnitEquation.
EquationVisitor() - Constructor for class ptolemy.moml.unit.EquationVisitor
 
equivalences - Variable in class ptolemy.actor.lib.GetCausalityInterface
Output port on which to put the description of the equivalence classes.
equivalentPorts(IOPort) - Method in interface ptolemy.actor.util.CausalityInterface
Return a collection of input ports in the associated actor that are in the same equivalence class as the specified input port.
equivalentPorts(IOPort) - Method in class ptolemy.actor.util.CausalityInterfaceForComposites
Return a set of the input ports in this actor that are in an equivalence class with the specified input.
equivalentPorts(IOPort) - Method in class ptolemy.actor.util.DefaultCausalityInterface
Return a collection of the input ports in this actor that are in the same equivalence class with the specified input port.
erasePoint(int, int) - Method in class ptolemy.plot.Plot
Erase the point at the given index in the given dataset.
erasePoint(int, int) - Method in interface ptolemy.plot.PlotInterface
Erase the point at the given index in the given dataset.
error(String, String, int, int) - Method in class com.microstar.xml.demo.XmlApp
Handle a parsing error.
error(String, String, int, int) - Method in class com.microstar.xml.demo.XmlApplet
Handle a parsing error.
error(String, String, int, int) - Method in class com.microstar.xml.driver.SAXDriver
Implement com.microstar.xml.XmlHandler#error.
error(String, String, int, int) - Method in class com.microstar.xml.HandlerBase
Throw an exception for a fatal error.
error(String, String, int, int) - Method in interface com.microstar.xml.XmlHandler
Fatal XML parsing error.
error - Variable in class org.kepler.actor.ssh.DirectoryCreator
The string representation of all the errors that happened during the execution of the actor, if there are any, otherwise an empty string.
error - Variable in class org.kepler.actor.ssh.FileCopier
The string representation of all the errors that happened during the execution of the actor, if there are any.
error - Variable in class org.kepler.actor.ssh.FileRemover
The string representation of all the errors that happened during the execution of the actor, if there are any.
ERROR - Static variable in class org.kepler.monitor.MonitoredStatus.State
Value for an "error" state.
error(String) - Method in class org.kepler.scriptengine.ScriptEngineActor
Set an error message that will be thrown in an exception after the current or next method is invoked in the script.
error - Variable in class org.kepler.spark.mllib.KMeansClustering
The sum of squared distances to their nearest center.
error - Variable in class org.kepler.spark.mllib.KMeansModel
The sum of squared distances to their nearest center.
error - Variable in class org.kepler.spark.mllib.RandomForestModel
Classification error on data set
error - Variable in class org.kepler.spark.mllib.SVMApply
The area under the receiver operating characteristic(ROC)
error - Variable in class org.kepler.spark.mllib.SVMKModel
The classification error
ERROR - Static variable in class org.kepler.workflowscheduler.gui.SchedulerAbstractAction
 
error - Variable in class ptolemy.actor.lib.Exec
Data that is generated by the subprocess on its standard error.
error(SAXParseException) - Method in class ptolemy.configs.test.ValidatingXMLParser
 
ERROR - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
error - Variable in class ptolemy.domains.modal.kernel.Transition
Parameter specifying whether this transition should be treated as an error transition.
error - Variable in class ptolemy.domains.sdf.lib.LMSAdaptive
The error input port.
error(String, String, int, int) - Method in class ptolemy.moml.MoMLParser
Indicate a fatal XML parsing error.
error(String, String, int, int) - Method in class ptolemy.plot.plotml.PlotBoxMLParser
Indicate a fatal XML parsing error.
error(String) - Static method in class ptolemy.util.MessageHandler
Defer to the set message handler to show the specified error message.
error(String, Throwable) - Static method in class ptolemy.util.MessageHandler
Defer to the set message handler to show the specified message and throwable information.
error(String, String, int, int) - Method in class ptolemy.vergil.actor.DocManager
Indicate a fatal XML parsing error.
ERROR_ROW_COLOR - Static variable in class org.kepler.workflowrunmanager.WRMDefaults
 
ERROR_ROW_SELECTED_COLOR - Static variable in class org.kepler.workflowrunmanager.WRMDefaults
 
errorAndExit(String, String[], Throwable) - Static method in class ptolemy.vergil.VergilApplication
Print out an error message and stack trace on stderr and then display a dialog box.
errorBar - Variable in class ptolemy.plot.PlotPoint
True if the yLowEB and yHighEB fields are valid.
errorCause - Variable in class ptolemy.domains.modal.kernel.FSMActor
Parameter containing the cause of an exception thrown while executing a refinement if the exception is a KernelException that specified a Nameable.
errorClass - Variable in class ptolemy.domains.modal.kernel.FSMActor
Parameter containing the name of the class of exception thrown while executing a refinement.
errorDelay - Variable in class ptolemy.domains.sdf.lib.LMSAdaptive
The number of samples of delay in the feedback loop that brings the error back.
errorFile - Variable in class org.cipres.kepler.GUIRunCIPRes
The standard error file's path and name are defined in this parameter.
errorFile - Variable in class org.cipres.kepler.JRunCIPRes
The standard error file's path and name are defined in this parameter.
errorHandler - Variable in class org.kepler.reporting.rio.fop.tools.AbstractObjectReader
Error handler
ErrorHandler - Interface in ptolemy.moml
Interface for error handlers for the MoMLParser class.
errorHandlingStrategy - Variable in class ptolemy.actor.lib.io.TokenReader
Deprecated.
The error handled strategy.
ErrorLogFile - Variable in class org.sdm.spa.ProcessFileRT
 
errorMessage - Variable in class ptolemy.domains.modal.kernel.FSMActor
Parameter containing the message of exception thrown while executing a refinement.
ErrorOutput - Variable in class org.ROADnet.OrbLogger
 
errorPower - Variable in class ptolemy.actor.lib.LevinsonDurbin
The output for the error power, as a function of the predictor order.
errors - Variable in class org.geon.Scp
The string representation of all the errors that happened during the execution of the actor, if there are any.
errors - Variable in class org.kepler.actor.gsissh.ExecGsisshCmd
The string representation of all the errors that happened during the execution of the actor, if there are any.
errors - Variable in class org.kepler.actor.ssh.ExecuteCmd
The string representation of all the errors that happened during the execution of the actor, if there are any.
errors - Variable in class org.sdm.spa.actors.io.DirectoryCreate
Port that outputs errors if there are any.
errors - Variable in class org.sdm.spa.actors.transport.GenericFileCopier
The string representation of all the errors that happened during the execution of the actor, if there are any.
errors - Variable in class org.sdm.spa.Ssh2Exec
The string representation of all the errors that happened during the execution of the actor, if there are any.
ErrorTokenName - Variable in class org.sdm.spa.ProcessFileRT
 
errorTolerance - Variable in class ptolemy.domains.continuous.kernel.ContinuousDirector
Error tolerance for data values, used with variable step size solvers to determine whether the current step size is accurate.
errorTolerance - Variable in class ptolemy.domains.continuous.lib.LevelCrossingDetector
The error tolerance specifying how close the value of a continuous input needs to be to the specified level to produce the output event.
errorTransitionList() - Method in class ptolemy.domains.modal.kernel.State
Return the list of outgoing error transitions from this state.
escape(String) - Static method in class org.json.Cookie
Produce a copy of a string in which the characters '+', '%', '=', ';' and control characters are replaced with "%hh".
escape(String) - Static method in class org.json.XML
Replace special characters with XML escapes: & (ampersand) is replaced by &amp; < (less than) is replaced by &lt; > (greater than) is replaced by &gt; " (double quote) is replaced by &quot;
escapeForXML(String) - Static method in class ptolemy.util.StringUtilities
Given a string, replace all the instances of XML special characters with their corresponding XML entities.
escapeForXML(String, boolean) - Static method in class ptolemy.util.StringUtilities
Given a string, replace all the instances of XML special characters with their corresponding XML entities.
escapeString(String) - Static method in class ptolemy.util.StringUtilities
Given a string, return a string that when fed to the Ptolemy expression parser, will turn into the argument string.
estimateTime(long) - Method in class org.geon.LidarUtilities
 
eval(String, ScriptContext) - Method in class org.kepler.scriptengine.java.JavaScriptEngine
 
eval(Reader, ScriptContext) - Method in class org.kepler.scriptengine.java.JavaScriptEngine
 
evalString(long[], String) - Method in class ptolemy.matlab.Engine
Send a string for evaluation to the matlab engine.
evaluate(String, Set, ParserScope) - Static method in class ptolemy.data.expr.MatlabUtilities
Evaluate a Matlab expression within a scope.
evaluateCommand(String) - Method in class org.sdm.spa.gui.DoubleShellTAPTableau
Evaluate the specified command.
evaluateCommand(String) - Method in class org.sdm.spa.gui.UserInteractiveShell
Evaluate the specified command.
evaluateCommand(String) - Method in class org.sdm.spa.TextualInteractionShell
Evaluate the specified command.
evaluateCommand(String) - Method in class ptolemy.actor.gui.exec.ExecShellTableau
Evaluate the specified command.
evaluateCommand(String) - Method in class ptolemy.actor.gui.ExpressionShellTableau
Evaluate the specified command.
evaluateCommand(String) - Method in class ptolemy.actor.gui.ptjacl.TclShellTableau
Evaluate the specified command.
evaluateCommand(String) - Method in class ptolemy.actor.gui.python.PythonShellTableau
Evaluate the specified command.
evaluateCommand(String) - Method in class ptolemy.actor.lib.gui.InteractiveDialog
Record the specified command and request a firing to send it to the output.
evaluateCommand(String) - Method in class ptolemy.actor.lib.gui.InteractiveShell
Evaluate the specified command.
evaluateCommand(String) - Method in interface ptolemy.gui.ShellInterpreter
Evaluate the specified command.
evaluateParseTree() - Method in class ptolemy.data.expr.ASTPtRootNode
Deprecated.
Use a ParseTreeEvaluator instead.
evaluateParseTree(ASTPtRootNode) - Method in class ptolemy.data.expr.ParseTreeEvaluator
Evaluate the parse tree with the specified root node.
evaluateParseTree(ASTPtRootNode, ParserScope) - Method in class ptolemy.data.expr.ParseTreeEvaluator
Evaluate the parse tree with the specified root node using the specified scope to resolve the values of variables.
evaluateParseTree(ASTPtRootNode, ParserScope) - Method in class ptolemy.domains.modal.kernel.ParseTreeEvaluatorForGuardExpression
Evaluate the parse tree with the specified root node using the specified scope to resolve the values of variables.
evaluateScript - Variable in class ptolemy.vergil.basic.export.web.Script
Parameter indicating whether the script text's expression should be evaluated or not.
event(DebugEvent) - Method in class org.kepler.provenance.ProvenanceRecorder
React to a generic debug event.
event(CommunicationAspect, Actor, int, int, double, CommunicationAspectListener.EventType) - Method in interface ptolemy.actor.CommunicationAspectListener
The event that is sent by the communication aspect and processed by the listener.
event(NamedObj, double, ExecutionAspectListener.ExecutionEventType) - Method in interface ptolemy.actor.ExecutionAspectListener
Plot a new execution event for an actor (i.e. an actor started/finished execution, was preempted or resumed).
event(CommunicationAspect, Actor, int, int, double, CommunicationAspectListener.EventType) - Method in class ptolemy.actor.gui.CommunicationAspectMonitor
The event is displayed.
event(DebugEvent) - Method in class ptolemy.actor.gui.DebugListenerTableau.DebugListenerFrame
Display a string representation of the specified event.
event(NamedObj, double, ExecutionAspectListener.ExecutionEventType) - Method in class ptolemy.actor.gui.ExecutionAspectPlotterEditorFactory
Plot a new execution event for an actor (i.e. an actor started/finished execution, was preempted or resumed).
EVENT - Static variable in class ptolemy.actor.lib.hoc.ThreadedComposite.TokenFrame
A (possibly empty) bundle of data and a time stamp that is either provided to the inside thread from the inputs of a ThreadedComposite or provided by the inside thread to form the outputs of a ThreadedComposite.
EVENT - Static variable in class ptolemy.data.type.BaseType
The event data type.
event(DebugEvent) - Method in interface ptolemy.kernel.util.DebugListener
React to the given event.
event(DebugEvent) - Method in class ptolemy.kernel.util.LoggerListener
Send a string representation of the event to the log.
event(DebugEvent) - Method in class ptolemy.kernel.util.NamedObj
React to the given debug event by relaying to any registered debug listeners.
event(DebugEvent) - Method in class ptolemy.kernel.util.RecorderListener
Append a string representation of the event to the current set of messages.
event(DebugEvent) - Method in class ptolemy.kernel.util.StreamListener
Print a string representation of the event to the stream associated with this listener.
event(DebugEvent) - Method in class ptolemy.vergil.actor.ActorViewerGraphController
React to an event by highlighting the actor being iterated.
event(DebugEvent) - Method in class ptolemy.vergil.basic.BasicGraphController
React to an event.
event(DebugEvent) - Method in class ptolemy.vergil.debugger.DebugController
Respond to all FiringEvents.
event(DebugEvent) - Method in class ptolemy.vergil.modal.FSMViewerGraphController
React to an event by highlighting the new state.
EventButton - Class in ptolemy.actor.lib.gui
Output a token when the actor is fired.
EventButton(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.gui.EventButton
Construct an actor.
EventButton - Class in ptolemy.domains.de.lib
Deprecated.
Use ptolemy.actor.lib.gui.EventButton, it is domain polymorphic.
EventButton(CompositeEntity, String) - Constructor for class ptolemy.domains.de.lib.EventButton
Deprecated.
Construct an actor with an input multiport of type GENERAL.
EventDemo - Class in com.microstar.xml.demo
Demonstration application showing Æfred's event stream.
EventDemo() - Constructor for class com.microstar.xml.demo.EventDemo
 
EventFilter - Class in ptolemy.domains.de.lib
An actor that filters a stream of Boolean Tokens.
EventFilter(CompositeEntity, String) - Constructor for class ptolemy.domains.de.lib.EventFilter
Construct an actor with the given container and name.
eventPerformed(ConfigurationEvent) - Method in interface org.kepler.configuration.ConfigurationEventListener
called when a configuration event occurs
eventPerformed(ConfigurationEvent) - Method in class org.kepler.configuration.SaveListener
called when a configuration event occurs
eventsConnectWidth - Variable in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Parameter specifying the width of the stroke connecting event points This is an int that defaults to 0.
eventsJSON - Variable in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Parameter giving the event traces in JSON format to be plot.
eventsMarkerRadius - Variable in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Parameter specifying the radius of markers for event points.
EventSource - Class in ptolemy.domains.continuous.lib
EventSource(CompositeEntity, String) - Constructor for class ptolemy.domains.continuous.lib.EventSource
Deprecated.
Construct an actor in the specified container with the specified name.
EventToDate - Class in ptolemy.domains.de.lib
A timed actor that outputs a date token that corresponds to the current model time (maintained by the local clock in the director).
EventToDate(CompositeEntity, String) - Constructor for class ptolemy.domains.de.lib.EventToDate
Create a new actor in the specified container with the specified name.
EventToken - Class in ptolemy.data
A token representing a pure event.
EventToken() - Constructor for class ptolemy.data.EventToken
 
eventType - Variable in class ptolemy.vergil.basic.export.web.Script
Event type to respond to by executing the command given by the value of this Script parameter.
evolutionStart() - Method in class org.kepler.provenance.Recording
Start an evolution.
evolutionStart() - Method in class org.kepler.provenance.sql.SQLRecordingV7
Start an evolution.
evolutionStart() - Method in class org.kepler.provenance.TextFileRecording
 
evolutionStop() - Method in class org.kepler.provenance.Recording
Stop an evolution.
evolutionStop() - Method in class org.kepler.provenance.sql.SQLRecordingV7
Stop an evolution.
evolutionStop() - Method in class org.kepler.provenance.TextFileRecording
 
ExamplePanel - Class in org.mlc.swing.example
An example.
ExamplePanel() - Constructor for class org.mlc.swing.example.ExamplePanel
Create the ExamplePanel.
ExampleSystem - Class in ptolemy.kernel.test
ExampleSystem constructs a hierarchal graph as shown in Ptolemy II design document, Figure 8.
ExampleSystem() - Constructor for class ptolemy.kernel.test.ExampleSystem
Construct the graph.
ExampleSystemJUnitTest - Class in ptolemy.kernel.test.junit
Run the ExampleSystem as a JUnit Test.
ExampleSystemJUnitTest() - Constructor for class ptolemy.kernel.test.junit.ExampleSystemJUnitTest
 
exceptionHandled(boolean, String) - Method in interface ptolemy.actor.lib.ExceptionSubscriber
Invoked by an exception handler (e.g.
ExceptionHandler - Interface in ptolemy.kernel.util
Interface for exception handlers.
ExceptionManager - Class in ptolemy.actor.lib
The ExceptionManager catches exceptions and attempts to handle them with the specified policy.
ExceptionManager(NamedObj, String) - Constructor for class ptolemy.actor.lib.ExceptionManager
Create a model attribute with the specified container and name.
ExceptionManagerGUIFactory - Class in ptolemy.actor.lib.gui
This is an attribute that creates an editor for configuring and running the exception manager.
ExceptionManagerGUIFactory(NamedObj, String) - Constructor for class ptolemy.actor.lib.gui.ExceptionManagerGUIFactory
Construct a factory with the specified container and name.
ExceptionManagerModel - Class in ptolemy.actor.lib
A composite entity that is the model contained by an ExceptionManager.
ExceptionManagerModel(Workspace) - Constructor for class ptolemy.actor.lib.ExceptionManagerModel
Construct an ExceptionManager in the specified workspace.
ExceptionManagerModel(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.ExceptionManagerModel
Create a new ExceptionManagerModel with the specified name and container.
ExceptionManagerModel(ExceptionManager, Workspace) - Constructor for class ptolemy.actor.lib.ExceptionManagerModel
Create a new ExceptionManagerModel with the specified workspace and the specified ExceptionManager.
exceptionMessage - Variable in class ptolemy.actor.lib.CatchExceptionAttribute
The exception message from the caught exception.
exceptionMessage - Variable in class ptolemy.actor.lib.ExceptionManager
The exception message from the caught exception.
exceptionOccurred(String, Throwable) - Method in interface ptolemy.actor.lib.ExceptionSubscriber
Action to execute upon the occurrence of an exception.
ExceptionSubscriber - Interface in ptolemy.actor.lib
An ExceptionSubscriber is an entity that is informed of exceptions and the handling policy for exceptions caught by CatchExceptionAttribute.
excessBW - Variable in class ptolemy.domains.sdf.lib.RaisedCosine
The excess bandwidth.
exclusiveBuffers() - Method in interface ptolemy.domains.sdf.optimize.BufferingProfile
returns the number of buffers required upon calling exclusive fire in excess of the input and output buffer.
exclusiveBuffers() - Method in class ptolemy.domains.sdf.optimize.lib.DummyDisplay
Provides the buffering profile, number of buffers required for an exclusive firing.
exclusiveBuffers() - Method in class ptolemy.domains.sdf.optimize.lib.DummySource
Provides the buffering profile, number of buffers required for an exclusive firing.
exclusiveBuffers() - Method in class ptolemy.domains.sdf.optimize.SharedBufferTransformer
Default value for number of frame buffers required for exclusive firing.
exclusiveExecutionTime() - Method in interface ptolemy.domains.sdf.optimize.BufferingProfile
returns (an estimate of) the execution time of an exclusive buffer firing of the actor.
exclusiveExecutionTime() - Method in class ptolemy.domains.sdf.optimize.lib.DummyDisplay
Provides the buffering profile, execution time estimate required for an exclusive firing.
exclusiveExecutionTime() - Method in class ptolemy.domains.sdf.optimize.lib.DummySource
Provides the buffering profile, execution time estimate required for an exclusive firing.
exclusiveExecutionTime() - Method in class ptolemy.domains.sdf.optimize.SharedBufferTransformer
Default value for execution time for exclusive firing.
exec - Variable in class org.kepler.provenance.actor.AddProvenanceKeyValues
Name of executable that generates key-value pairs.
exec(User, JsonObject, Handler<AsyncResult<JsonArray>>) - Method in interface org.kepler.webview.server.app.App
 
exec(User, JsonObject, Handler<AsyncResult<JsonArray>>) - Method in class org.kepler.webview.server.app.Echo
Return input parameters.
exec(User, JsonObject, Handler<AsyncResult<JsonArray>>) - Method in class org.kepler.webview.server.app.GetURL
 
exec(User, JsonObject, Handler<AsyncResult<JsonArray>>) - Method in class org.kepler.webview.server.app.ro.CreateRO
 
Exec - Class in ptolemy.actor.lib
Execute a command as a separately running subprocess.
Exec(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Exec
Construct an actor with the given container and name.
EXEC_ID - Static variable in class org.kepler.workflowrunmanager.WRMDefaults
 
EXEC_ID_COLUMN_WIDTH - Static variable in class org.kepler.workflowrunmanager.WRMDefaults
 
execAnnotationStr - Static variable in class org.kepler.provenance.sql.SQLRecordingV8.SQLRecordingParametersV8
Name of execution annotation parameter.
ExecException - Exception in org.kepler.ssh
Exception for failures in classes implementing ExecInterface thrown in ExecInterface.java
ExecException(String) - Constructor for exception org.kepler.ssh.ExecException
 
ExecFactory - Class in org.kepler.ssh
This class provides a factory to give you an object implementing the ExecInterface.
ExecGsisshCmd - Class in org.kepler.actor.gsissh
Connects to a remote host using gsissh and execute commands.
ExecGsisshCmd(CompositeEntity, String) - Constructor for class org.kepler.actor.gsissh.ExecGsisshCmd
 
ExecIdCellEditor - Class in org.kepler.workflowrunmanager.gui
 
ExecIdCellEditor(JTextField) - Constructor for class org.kepler.workflowrunmanager.gui.ExecIdCellEditor
 
ExecIdQueryParse - Class in org.kepler.workflowrunmanager
 
ExecIdQueryParse(String) - Constructor for class org.kepler.workflowrunmanager.ExecIdQueryParse
 
ExecInterface - Interface in org.kepler.ssh
This interface defines functionality to execute local/remote commands and to transfer files.
ExecShellEffigy - Class in ptolemy.actor.gui.exec
A representative of an Exec expression shell.
ExecShellEffigy(Workspace) - Constructor for class ptolemy.actor.gui.exec.ExecShellEffigy
Create a new effigy in the specified workspace with an empty string for its name.
ExecShellEffigy(CompositeEntity, String) - Constructor for class ptolemy.actor.gui.exec.ExecShellEffigy
Create a new effigy in the given container with the given name.
ExecShellEffigy.ShellFactory - Class in ptolemy.actor.gui.exec
A factory for creating new Ptolemy effigies.
ExecShellFrame(ExecShellTableau) - Constructor for class ptolemy.actor.gui.exec.ExecShellTableau.ExecShellFrame
Construct a frame to display the ExecShell window.
ExecShellTableau - Class in ptolemy.actor.gui.exec
A tableau that provides a Exec Shell for interacting with the Bash shell.
ExecShellTableau(ExecShellEffigy, String) - Constructor for class ptolemy.actor.gui.exec.ExecShellTableau
Create a new tableau.
ExecShellTableau.ExecShellFrame - Class in ptolemy.actor.gui.exec
The frame that is created by an instance of ExecShellTableau.
ExecShellTableau.Factory - Class in ptolemy.actor.gui.exec
A factory that creates a control panel to display a Exec Shell.
ExecTimeoutException - Exception in org.kepler.ssh
Exception for timeout failures in classes implementing ExecInterface thrown in SshExec.java and LocalExec.java
ExecTimeoutException(String) - Constructor for exception org.kepler.ssh.ExecTimeoutException
 
executable - Variable in class org.kepler.actor.job.GenericJobLauncher
The executable file to be used at job submission.
executable - Variable in class org.kepler.actor.job.JobCreator
The executable file to be used at job submission.
Executable - Interface in ptolemy.actor
This interface defines the action methods, which determine how an object can be invoked.
execute(String, String, float, float, float, float, float, float, float, float, float) - Method in class com.numericsolutions.geomodeltools.invdist_power_isosearch2d
 
execute(String, Map) - Method in class org.geon.LidarWorkflowExecute
This method takes a url specifying the model to be execute.
execute(String, String) - Method in class org.geon.ModelService
Deprecated.
This method takes a url specifying the model to be execute.
execute(String, Map) - Method in class org.geon.WorkflowExecute
Deprecated.
This method takes a url specifying the model to be execute.
execute(GridCoverage2D[], String, String, String[], Range.DataType, ProgressListener) - Method in class org.kepler.gis.actor.calc.JiffleProcess
Executes a Jiffle raster algebra.
execute(SimpleFeatureCollection, SimpleFeatureCollection) - Method in class org.kepler.gis.data.UnionFeatureCollection
 
execute() - Method in class org.kepler.spark.operator.CoGroupOperator
Execute the operator.
execute() - Method in class org.kepler.spark.operator.CrossOperator
Execute the operator.
execute() - Method in class org.kepler.spark.operator.FileDataSink
Execute the operator.
execute() - Method in class org.kepler.spark.operator.FileDataSource
Execute the operator.
execute() - Method in class org.kepler.spark.operator.JoinOperator
Execute the operator.
execute() - Method in class org.kepler.spark.operator.MapOperator
Execute the operator.
execute() - Method in class org.kepler.spark.operator.NullSink
Execute the operator.
execute() - Method in class org.kepler.spark.operator.Operator
Execute the operator.
execute() - Method in class org.kepler.spark.operator.ReduceOperator
Execute the operator.
execute() - Method in class org.kepler.spark.operator.TokenSink
Execute the operator.
execute() - Method in class org.kepler.spark.operator.TokenSource
Execute the operator.
execute() - Static method in class org.kepler.util.RunnableExecutionQueue
Execute all the submitted Runnables.
execute() - Method in class ptolemy.actor.Manager
Execute the model.
execute() - Method in class ptolemy.domains.modal.kernel.AbstractActionsAttribute
Execute this action.
execute() - Method in class ptolemy.domains.modal.kernel.Action
Execute the action.
execute() - Method in class ptolemy.domains.modal.kernel.CommitActionsAttribute
Send tokens to the designated outputs.
execute() - Method in class ptolemy.domains.modal.kernel.OutputActionsAttribute
Send tokens to the designated outputs.
execute() - Method in class ptolemy.kernel.undo.test.UndoActionTest
Execute the undo or redo action by printing the name on stdout.
execute() - Method in interface ptolemy.kernel.undo.UndoAction
Execute the undo or redo action.
execute() - Method in class ptolemy.kernel.undo.UndoActionsList
Execute the action.
execute() - Method in class ptolemy.kernel.util.ChangeRequest
Execute the change.
execute() - Method in class ptolemy.moml.MoMLUndoEntry
Parse the MoML specified in the constructor call in the context specified in the constructor call using the parser associated with the context (as determined by ParserAttribute.getParser()).
execute() - Method in class ptolemy.vergil.basic.layout.kieler.UndoLayoutAction
Execute the undo or redo action.
executeActor(String) - Method in class org.kepler.provenance.RecordPlayer
Re-execute an actor.
ExecuteActor - Class in ptolemy.actor.lib.hoc
This is a composite actor that can execute the contained model completely, as if it were a top-level model, on each firing.
ExecuteActor(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.hoc.ExecuteActor
Construct a RunCompositeActor with a name and a container.
executeApp(JsonObject, User, Handler<AsyncResult<JsonObject>>) - Method in class org.kepler.webview.server.WebViewServer
Execute an app.
executeChangeRequests() - Method in class ptolemy.actor.lib.hoc.LifeCycleManager
Override the base class to not delegate up the hierarchy but rather to handle the request locally.
executeChangeRequests() - Method in interface ptolemy.kernel.util.Changeable
Execute requested changes.
executeChangeRequests() - Method in class ptolemy.kernel.util.NamedObj
Execute previously requested changes.
ExecuteCmd - Class in org.kepler.actor.ssh
Connects to a remote host using Ssh protocol (or does nothing for the local host) and executes a command.
ExecuteCmd(CompositeEntity, String) - Constructor for class org.kepler.actor.ssh.ExecuteCmd
Construct an ExecuteCmd actor with the given container and name.
executeCmd(String, OutputStream, OutputStream) - Method in interface org.kepler.ssh.ExecInterface
Execute a command externally.
executeCmd(String, OutputStream, OutputStream, String) - Method in interface org.kepler.ssh.ExecInterface
Execute a command externally where the command connects to a third party and needs to authenticate to that third party.
executeCmd(String, OutputStream, OutputStream) - Method in class org.kepler.ssh.GsiSshExec
 
executeCmd(String, OutputStream, OutputStream, String) - Method in class org.kepler.ssh.GsiSshExec
 
executeCmd(String, OutputStream, OutputStream) - Method in class org.kepler.ssh.LocalExec
Execute a command on the local machine 'command' is the full command with arguments to be executed return: the exit code of the command additional effects: streamOut is continuously written during execution the stdout of the command.
executeCmd(String, OutputStream, OutputStream, String) - Method in class org.kepler.ssh.LocalExec
 
executeCmd(String, OutputStream, OutputStream) - Method in class org.kepler.ssh.SshExec
Execute a command on the remote machine.
executeCmd(String, OutputStream, OutputStream, String) - Method in class org.kepler.ssh.SshExec
Execute a command on the remote machine and expect a password/passphrase question from the command.
ExecuteCommands - Interface in ptolemy.util
Interface for classes execute commands in a subprocess.
ExecuteCompositeActor - Class in ptolemy.actor.lib.hoc
This is a composite actor that can execute the contained model completely, as if it were a top-level model, on each firing.
ExecuteCompositeActor() - Constructor for class ptolemy.actor.lib.hoc.ExecuteCompositeActor
Construct an actor in the default workspace with no container and an empty string as its name.
ExecuteCompositeActor(Workspace) - Constructor for class ptolemy.actor.lib.hoc.ExecuteCompositeActor
Construct a ExecuteCompositeActor in the specified workspace with no container and an empty string as a name.
ExecuteCompositeActor(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.hoc.ExecuteCompositeActor
Construct a ExecuteCompositeActor with a name and a container.
executeGetMethod(List<NameValuePair>, String) - Method in class org.camera.service.CAMERARESTService
 
executeGetMethod(List<NameValuePair>, String) - Method in class org.kepler.actor.rest.RESTService
 
executeModel(CompositeActor) - Method in class org.geon.LidarWorkflowExecute
This method takes model argument which is type of CompositeActor.
executeModel(CompositeActor) - Method in class org.geon.ModelService
Deprecated.
This method takes model argument which is type of CompositeActor.
executeModel(CompositeActor) - Method in class org.geon.WorkflowExecute
Deprecated.
This method takes model argument which is type of CompositeActor.
executeModel(URL, RecordToken, String[]) - Static method in class ptolemy.actor.lib.hoc.ModelUtilities
This method takes a url specifying the model to be execute.
executeModel(CompositeActor, RecordToken, String[]) - Static method in class ptolemy.actor.lib.hoc.ModelUtilities
This method takes model argument which is type of CompositeActor.
executePostMethod(List<NameValuePair>, List<NameValuePair>, String) - Method in class org.camera.service.CAMERARESTService
File & regular parameters are passed as two separate lists and they are treated little differently.
executePostMethod(List<NameValuePair>, List<NameValuePair>, String) - Method in class org.kepler.actor.rest.RESTService
File & regular parameters are passed as two separate lists and they are treated little differently.
executeProcess(String, Map) - Method in class org.geon.LidarWorkflowExecute
 
executeQuery(String, Map) - Method in class org.geon.LidarWorkflowExecute
 
executeSQLCommand(String) - Static method in class org.kepler.objectmanager.cache.CacheUtil
execute a SQL command against the hsql database
executeWf(WritableComparable, Iterator<Writable>, Iterator<Writable>) - Method in class org.kepler.hadoop.execution.KeplerApp4CoGroup
 
executeWf(WritableComparable, Writable, WritableComparable, Writable) - Method in class org.kepler.hadoop.execution.KeplerApp4Cross
 
executeWf(WritableComparable, Writable, String, String) - Method in class org.kepler.hadoop.execution.KeplerApp4Map
 
executeWf(WritableComparable, Writable, Writable) - Method in class org.kepler.hadoop.execution.KeplerApp4Match
 
executeWf(WritableComparable, Iterator<Writable>) - Method in class org.kepler.hadoop.execution.KeplerApp4Reduce
 
executeWorkflow(JsonObject, User, Handler<AsyncResult<JsonObject>>) - Method in class org.kepler.webview.server.WebViewServer
Execute a workflow.
EXECUTION_CHANGED - Static variable in class org.kepler.gui.state.ReportingStateChangeEvent
 
EXECUTION_ERROR - Static variable in class org.kepler.workflowrunmanager.WorkflowRunManagerEvent
 
EXECUTION_IMPORTED - Static variable in class org.kepler.workflowrunmanager.WorkflowRunManagerEvent
 
EXECUTION_START - Static variable in class org.kepler.workflowrunmanager.WorkflowRunManagerEvent
 
EXECUTION_STOP - Static variable in class org.kepler.workflowrunmanager.WorkflowRunManagerEvent
 
ExecutionAspectHelper - Class in ptolemy.actor
This is a helper class for execution aspects used in AtomicExecutionAspect and CompositeExecutionAspect.
ExecutionAspectHelper() - Constructor for class ptolemy.actor.ExecutionAspectHelper
 
ExecutionAspectListener - Interface in ptolemy.actor
This is an interface for an execution aspect.
ExecutionAspectListener.ExecutionEventType - Enum in ptolemy.actor
Execution time event types.
ExecutionAspectPlotterEditorFactory - Class in ptolemy.actor.gui
Factory that creates the plotter for the schedule of actors on a resource scheduler.
ExecutionAspectPlotterEditorFactory(NamedObj, String) - Constructor for class ptolemy.actor.gui.ExecutionAspectPlotterEditorFactory
Constructs a SchedulePlotter$SchedulePlotterEditorFactory object.
ExecutionAttributes - Class in ptolemy.actor
Container for decorator attributes that are provided to actors by a ExecutionAspect.
ExecutionAttributes(NamedObj, Decorator) - Constructor for class ptolemy.actor.ExecutionAttributes
Constructor to use when editing a model.
ExecutionAttributes(NamedObj, String) - Constructor for class ptolemy.actor.ExecutionAttributes
Constructor to use when parsing a MoML file.
ExecutionChoice - Class in org.kepler.ddp.actor
An actor that supports multiple choices for execution.
ExecutionChoice(CompositeEntity, String) - Constructor for class org.kepler.ddp.actor.ExecutionChoice
Create a new ExecutionChoice in a container with the specified name.
ExecutionChoice(Workspace) - Constructor for class org.kepler.ddp.actor.ExecutionChoice
Create a new ExecutionChoice in a workspace.
ExecutionChoice.IOType - Enum in org.kepler.ddp.actor
The types of input/outputs.
ExecutionChoice.ParameterType - Enum in org.kepler.ddp.actor
The types of parameters.
ExecutionChoiceDirector - Class in org.kepler.ddp.actor
A director to control the execution of execution choice actors.
ExecutionChoiceDirector(CompositeEntity, String) - Constructor for class org.kepler.ddp.actor.ExecutionChoiceDirector
Create a new ExecutionChoiceDirector in a container with a specific name.
ExecutionChoiceEditorFactory - Class in org.kepler.ddp.gui
An editor factory to create an editor for ExecutionChoice.
ExecutionChoiceEditorFactory(NamedObj, String) - Constructor for class org.kepler.ddp.gui.ExecutionChoiceEditorFactory
 
ExecutionChoiceEditorPane - Class in org.kepler.ddp.gui
A pane to configure an execution choice actor.
ExecutionChoiceEditorPane(ExecutionChoice) - Constructor for class org.kepler.ddp.gui.ExecutionChoiceEditorPane
 
ExecutionChoiceEditorPane.Factory - Class in org.kepler.ddp.gui
An editor pane factory for execution choice.
ExecutionChoiceGraphTableau - Class in org.kepler.ddp.gui
An editor tableau for execution choice constructs.
ExecutionChoiceGraphTableau(PtolemyEffigy, String) - Constructor for class org.kepler.ddp.gui.ExecutionChoiceGraphTableau
Create a new execution choice editor tableau with the specified container and name.
ExecutionChoiceGraphTableau(PtolemyEffigy, String, LibraryAttribute) - Constructor for class org.kepler.ddp.gui.ExecutionChoiceGraphTableau
Create a new execution choice editor tableau with the specified container, name, and default library.
ExecutionChoiceGraphTableau.Factory - Class in org.kepler.ddp.gui
A factory that creates graph editing tableaux for Ptolemy models.
executionClass - Variable in class org.kepler.ddp.actor.pattern.SingleInputPatternActor
The name of the execution class.
executionCode - Variable in class org.kepler.ddp.actor.pattern.SingleInputPatternActor
The type of the execution code.
ExecutionEngine - Class in org.kepler
This class is the main entry point for making API calls to the underlying ptolemy execution engine and moml parser.
executionError(Manager, Throwable) - Method in class org.kepler.ExecutionEngine
implements executionError in ExecutionListener
executionError(Manager, Throwable) - Method in class org.kepler.hadoop.execution.KeplerAppBase
 
executionError(Manager, Throwable) - Method in class org.kepler.KeplerConfigurationApplication
Print a stack trace of the error.
executionError(Nameable, Throwable) - Method in class org.kepler.profiling.gui.ExecutionMonitorPanel.ExecutionMonitorRecording
The workflow had an error.
executionError(Manager, Throwable) - Method in class org.kepler.provenance.ProvenanceRecorder
Report an execution failure.
executionError(Nameable, Throwable) - Method in class org.kepler.provenance.Recording
An actor threw an exception.
executionError(Nameable, Throwable, KeplerLSID) - Method in class org.kepler.provenance.Recording
An actor threw an exception.
executionError(Nameable, Throwable, KeplerLSID) - Method in class org.kepler.provenance.sql.SQLRecordingV8
An actor threw an exception.
executionError(Nameable, Throwable) - Method in class org.kepler.provenance.TextFileRecording
An actor threw an exception.
executionError(Manager, Throwable) - Method in class org.kepler.spark.stub.KeplerPairFlatMapFunction
Report workflow execution errors to the log.
executionError(Manager, Throwable) - Method in class org.kepler.stratosphere.stub.KeplerCoGroupStub
Report workflow execution errors to the log.
executionError(Manager, Throwable) - Method in class org.kepler.stratosphere.stub.KeplerCrossStub
Report workflow execution errors to the log.
executionError(Manager, Throwable) - Method in class org.kepler.stratosphere.stub.KeplerMapStub
Report workflow execution errors to the log.
executionError(Manager, Throwable) - Method in class org.kepler.stratosphere.stub.KeplerMatchStub
Report workflow execution errors to the log.
executionError(Manager, Throwable) - Method in class org.kepler.stratosphere.stub.KeplerReduceStub
Report workflow execution errors to the log.
executionError(Nameable, Throwable, KeplerLSID) - Method in class org.kepler.webview.provenance.WebViewRecording
An actor threw an exception.
executionError(Nameable, Throwable, KeplerLSID) - Method in class org.kepler.workflowrunmanager.WorkflowRunManagerRecording
update WRM table after an execution gives an error.
executionError(Manager, Throwable) - Method in interface ptolemy.actor.ExecutionListener
Report an execution failure.
executionError(Manager, Throwable) - Method in class ptolemy.actor.gui.ConfigurationApplication
Reduce the count of executing models by one.
executionError(Manager, Throwable) - Method in class ptolemy.actor.gui.ModelFrame
Report that an execution error has occurred.
executionError(Manager, Throwable) - Method in class ptolemy.actor.gui.PtExecuteApplication
Display a stack trace because one of the models has an error.
executionError(Manager, Throwable) - Method in class ptolemy.actor.gui.PtolemyApplet
Report that an execute error occurred.
executionError(Manager, Throwable) - Method in class ptolemy.actor.lib.CatchExceptionAttribute
Do nothing upon execution error.
executionError(Manager, Throwable) - Method in class ptolemy.actor.lib.ExceptionManager
Do nothing upon execution error.
executionError(Manager, Throwable) - Method in class ptolemy.actor.lib.hoc.ApplyFilterOverArray
React to the fact that execution has failed by unregistering as an execution listener and by allowing subsequent executions.
executionError(Manager, Throwable) - Method in class ptolemy.actor.lib.hoc.ModelReference
React to the fact that execution has failed by unregistering as an execution listener and by allowing subsequent executions.
executionError(Manager, Throwable) - Method in class ptolemy.actor.StreamExecutionListener
Report an execution failure by printing a message to output stream specified to the constructor.
executionError(Manager, Throwable) - Method in class ptolemy.moml.MoMLSimpleApplication
Report an execution failure.
executionError(Manager, Throwable) - Method in class ptolemy.vergil.actor.lib.ShowTypes
Update displayed types.
executionError(Manager, Throwable) - Method in class ptolemy.vergil.basic.RunnableGraphController
Report that an execution error has occurred.
executionFinished(Manager) - Method in class org.kepler.ExecutionEngine
implements executionFinished in ExecutionListener
executionFinished(Manager) - Method in class org.kepler.hadoop.execution.KeplerAppBase
 
executionFinished(Manager) - Method in class org.kepler.provenance.ProvenanceRecorder
Report that the current execution has finished and the wrapup sequence has completed normally.
executionFinished(Manager) - Method in class org.kepler.spark.stub.KeplerPairFlatMapFunction
Do nothing.
executionFinished(Manager) - Method in class org.kepler.stratosphere.stub.KeplerCoGroupStub
Do nothing.
executionFinished(Manager) - Method in class org.kepler.stratosphere.stub.KeplerCrossStub
Do nothing.
executionFinished(Manager) - Method in class org.kepler.stratosphere.stub.KeplerMapStub
Do nothing.
executionFinished(Manager) - Method in class org.kepler.stratosphere.stub.KeplerMatchStub
Do nothing.
executionFinished(Manager) - Method in class org.kepler.stratosphere.stub.KeplerReduceStub
Do nothing.
executionFinished(Manager) - Method in interface ptolemy.actor.ExecutionListener
Report that the current execution has finished and the wrapup sequence has completed normally.
executionFinished(Manager) - Method in class ptolemy.actor.gui.ConfigurationApplication
Reduce the count of executing models by one.
executionFinished(Manager) - Method in class ptolemy.actor.gui.ModelFrame
Report that execution of the model has finished.
executionFinished(Manager) - Method in class ptolemy.actor.gui.PtolemyApplet
Report that execution of the model has finished.
executionFinished(Manager) - Method in class ptolemy.actor.lib.CatchExceptionAttribute
Restart here if restart is desired.
executionFinished(Manager) - Method in class ptolemy.actor.lib.ExceptionManager
Restart here if restart is desired.
executionFinished(Manager) - Method in class ptolemy.actor.lib.hoc.ApplyFilterOverArray
React to the fact that execution is finished by unregistering as an execution listener and by allowing subsequent executions.
executionFinished(Manager) - Method in class ptolemy.actor.lib.hoc.ModelReference
React to the fact that execution is finished by unregistering as an execution listener and by allowing subsequent executions.
executionFinished(Manager) - Method in class ptolemy.actor.StreamExecutionListener
Report that the current execution finished by printing a message to output stream specified to the constructor.
executionFinished(Manager) - Method in class ptolemy.moml.MoMLSimpleApplication
Report that the current execution has finished and the wrapup sequence has completed normally.
executionFinished(Manager) - Method in class ptolemy.vergil.actor.lib.ShowTypes
Do nothing.
executionFinished(Manager) - Method in class ptolemy.vergil.basic.RunnableGraphController
Report that execution of the model has finished.
executionImported(KeplerLSID) - Method in class org.kepler.provenance.ProvenanceRecorder
Report that an execution has been imported
executionImported() - Method in class org.kepler.provenance.Recording
An execution was imported.
executionImported(KeplerLSID) - Method in class org.kepler.provenance.Recording
An execution was imported.
executionImported() - Method in class org.kepler.provenance.sql.SQLRecording
An execution was imported.
executionImported(KeplerLSID) - Method in class org.kepler.workflowrunmanager.WorkflowRunManagerRecording
update WRM table after an execution has been imported.
ExecutionListener - Interface in ptolemy.actor
An ExecutionListener listens for events that are issued during the execution of a model by a Manager.
ExecutionMonitorPanel - Class in org.kepler.profiling.gui
A panel that displays actor execution information.
ExecutionMonitorPanel(String) - Constructor for class org.kepler.profiling.gui.ExecutionMonitorPanel
Create a new ExecutionMonitorPanel with the specified name.
ExecutionMonitorPanel.ActorInfo - Class in org.kepler.profiling.gui
A utility class to hold information about a single execution of an actor.
ExecutionMonitorPanel.ExecutionMonitorRecording - Class in org.kepler.profiling.gui
A class to monitor workflow execution by receiving provenance events.
ExecutionMonitorRecording() - Constructor for class org.kepler.profiling.gui.ExecutionMonitorPanel.ExecutionMonitorRecording
 
executionOnFiring - Variable in class ptolemy.actor.lib.hoc.ModelReference
The value of this string parameter determines what execution happens when the fire() method is invoked.
ExecutionPanelConfigureDialog - Class in org.kepler.profiling.gui
A dialog to configure the execution monitor.
ExecutionPanelConfigureDialog(ExecutionMonitorPanel, boolean) - Constructor for class org.kepler.profiling.gui.ExecutionPanelConfigureDialog
Create a new ConfigureDialog for the specified monitor.
executionStart(KeplerLSID, Date) - Method in class org.kepler.profiling.gui.ExecutionMonitorPanel.ExecutionMonitorRecording
Record the starting of workflow execution.
executionStart() - Method in class org.kepler.provenance.opm.OpenProvenanceModelXML
Deprecated.
Record the starting of workflow execution.
executionStart(KeplerLSID, Date) - Method in class org.kepler.provenance.prov.ProvRecording
 
executionStart() - Method in class org.kepler.provenance.Recording
Record the starting of workflow execution.
executionStart(Date) - Method in class org.kepler.provenance.Recording
Record the starting of workflow execution at a specific time.
executionStart(KeplerLSID) - Method in class org.kepler.provenance.Recording
Record the starting of workflow execution.
executionStart(KeplerLSID, Date) - Method in class org.kepler.provenance.Recording
Record the starting of workflow execution at a specific time.
executionStart(Date) - Method in class org.kepler.provenance.sql.SQLRecording
Record the starting of workflow execution.
executionStart(KeplerLSID, Date) - Method in class org.kepler.provenance.sql.SQLRecordingV8
Record the starting of workflow execution.
executionStart() - Method in class org.kepler.provenance.TextFileRecording
Record the starting of workflow execution.
executionStart(KeplerLSID, Date) - Method in class org.kepler.webview.provenance.WebViewRecording
Record the starting of workflow execution at a specific time.
executionStart(KeplerLSID) - Method in class org.kepler.workflowrunmanager.WorkflowRunManagerRecording
update WRM table to see a run as it's running.
executionStop(KeplerLSID, Date) - Method in class org.kepler.profiling.gui.ExecutionMonitorPanel.ExecutionMonitorRecording
Record the stopping of workflow execution.
executionStop() - Method in class org.kepler.provenance.opm.OpenProvenanceModelXML
Deprecated.
Record the stopping of workflow execution.
executionStop(KeplerLSID, Date) - Method in class org.kepler.provenance.prov.ProvRecording
Record the stopping of workflow execution.
executionStop() - Method in class org.kepler.provenance.Recording
Record the stopping of workflow execution.
executionStop(Date) - Method in class org.kepler.provenance.Recording
Record the stopping of workflow execution at a specific time.
executionStop(KeplerLSID) - Method in class org.kepler.provenance.Recording
Record the stopping of workflow execution.
executionStop(KeplerLSID, Date) - Method in class org.kepler.provenance.Recording
Record the stopping of workflow execution.
executionStop(Date) - Method in class org.kepler.provenance.sql.SQLRecording
Record the stopping of workflow execution.
executionStop(KeplerLSID, Date) - Method in class org.kepler.provenance.sql.SQLRecordingV8
Record the stopping of workflow execution.
executionStop() - Method in class org.kepler.provenance.TextFileRecording
Record the stopping of workflow execution.
executionStop() - Method in class org.kepler.provenance.XMLRecording
Deprecated.
Record the stopping of workflow execution.
executionStop(KeplerLSID, Date) - Method in class org.kepler.webview.provenance.WebViewRecording
Record the stopping of workflow execution.
executionStop(KeplerLSID) - Method in class org.kepler.workflowrunmanager.WorkflowRunManagerRecording
update WRM table after an execution finishes.
ExecutionThread - Class in org.geon
Thread for executing the Lidar processing.
ExecutionThread() - Constructor for class org.geon.ExecutionThread
 
ExecutionThread(HttpServletRequest, StringBuffer, String, String, String, String) - Constructor for class org.geon.ExecutionThread
 
ExecutionTime - Class in ptolemy.actor.lib
Read the input token, if there is one, execute an (uninteresting) computation to consume a specified amount of real time or to execute it a fixed number of times, and produce on the output the actual execution time (in milliseconds).
ExecutionTime(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.ExecutionTime
Construct an actor with the given container and name.
executionTime - Variable in class ptolemy.actor.lib.ExecutionTime
The amount of time to consume.
ExistingConceptCBItem(OntologyCatalog, String) - Constructor for class org.kepler.tagging.gui.CBItems.ExistingConceptCBItem
 
ExistingConceptCBItem(OntologyCatalog, NamedOntClass) - Constructor for class org.kepler.tagging.gui.CBItems.ExistingConceptCBItem
 
ExistingSchedulePanel - Class in org.kepler.workflowscheduler.gui
A tab pane to display existing schedule.
ExistingSchedulePanel(Schedule[], TableauFrame, WorkflowSchedulerParentPanel, ScheduleChangeController) - Constructor for class org.kepler.workflowscheduler.gui.ExistingSchedulePanel
Constructor
existingTagsPanel - Variable in class org.kepler.tagging.gui.AutoCompleteComboBox
 
ExistingTagsPanel - Class in org.kepler.tagging.gui
Created by IntelliJ IDEA.
ExistingTagsPanel() - Constructor for class org.kepler.tagging.gui.ExistingTagsPanel
 
ExistingTagsPanel(TagBarUI) - Constructor for class org.kepler.tagging.gui.ExistingTagsPanel
 
Exit - Class in ptolemy.actor.lib
A simple sink actor that consumes and discards input tokens and then calls System.exit() in wrapup.
Exit(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Exit
Construct an actor with an input multiport.
exit() - Method in class ptolemy.gui.Top
Exit the application after querying the user to save data.
exit(int) - Static method in class ptolemy.util.StringUtilities
If the ptolemy.ptII.exitAfterWrapup or the ptolemy.ptII.doNotExit properties are not set, then call System.exit().
exitAfterWrapup() - Method in class ptolemy.actor.Manager
Cause the system to exit after wrapup().
exitAngle - Variable in class ptolemy.domains.modal.kernel.Transition
Attribute the exit angle of a visual rendition.
exitApplication() - Method in class org.mlc.swing.layout.LayoutFrame
 
exitCode - Variable in class org.cipres.kepler.GUIRunCIPRes
The exit code of the execution is sent out through this port.
exitCode - Variable in class org.cipres.kepler.JRunCIPRes
The exit code of the execution is sent out through this port.
exitcode - Variable in class org.kepler.actor.gsissh.ExecGsisshCmd
The exit code of the command.
exitcode - Variable in class org.kepler.actor.ssh.ExecuteCmd
The exit code of the command.
exitcode - Variable in class org.sdm.spa.actors.transport.GenericFileCopier
The exit code of the command.
exitCode - Variable in class org.sdm.spa.CommandLine
 
exitCode - Variable in class org.sdm.spa.CommandLineExec
Exit code will be 1 if the command executes successfully.
exitCode - Variable in class org.srb.DataGridTransfer
Exit status of the operation.
exitCode - Variable in class org.srb.SGet
Exit status of the operation.
exitCode - Variable in class org.srb.SProxy
Execution exit code.
exitCode - Variable in class org.srb.SPut
Exit status of the operation
exitCode - Variable in class ptolemy.actor.lib.Exec
The exit code of the subprocess.
EXITING - Static variable in class ptolemy.actor.Manager
Indicator that the execution is in the wrapup phase and about to exit.
exp() - Method in class ptolemy.math.Complex
Return the exponential of this complex number, or ez, where z is this complex number.
exp(Complex) - Static method in class ptolemy.math.Complex
Return the exponential of the specified complex number, or ez, where z is the argument.
expand() - Method in class ptolemy.actor.parameters.ParameterSet
Expand the scope of the container by creating any required attributes.
expand() - Method in class ptolemy.data.expr.ScopeExtendingAttribute
Expand the scope of the container by creating any required attributes.
expand() - Method in interface ptolemy.kernel.util.ScopeExtender
Expand the scope of the container by creating any required parameters.
expand(UnitEquation, ComponentEntity) - Method in class ptolemy.moml.unit.ExpandPortNames
The method is the entry point to the class.
expandAll(JTree) - Static method in class org.kepler.gui.LibrarySearchResultPane
expand a given tree
expandAll() - Method in class org.kepler.gui.LibrarySearchResultPane
expand the entire default library tree
expandAllLibraryRows() - Method in class ptolemy.actor.gui.PtolemyFrame
Expand all the rows of the library.
expandAllLibraryRows() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Expand all the rows of the library.
ExpandBuff(boolean) - Method in class ptolemy.data.expr.SimpleCharStream
 
ExpandBuff(boolean) - Method in class ptolemy.moml.unit.SimpleCharStream
 
ExpandPortNames - Class in ptolemy.moml.unit
Visit a UnitEquation and for each contained variable that represents a port substitute it with a variable that represents the port from the perspective of the model that contains the actor that contains the port.
ExpandPortNames() - Constructor for class ptolemy.moml.unit.ExpandPortNames
 
expectedTokenSequences - Variable in exception ptolemy.data.expr.ParseException
Each entry in this array is an array of integers.
expectedTokenSequences - Variable in exception ptolemy.moml.unit.ParseException
Each entry in this array is an array of integers.
EXPERT - Static variable in interface ptolemy.kernel.util.Settable
Indicator that a user interface should make an instance visible only to experts.
ExpertParameter - Class in ptolemy.data.expr
This class is identical to Parameter except that its visibility is set to "expert" by default.
ExpertParameter(NamedObj, String) - Constructor for class ptolemy.data.expr.ExpertParameter
Construct a parameter with the given name contained by the specified entity.
ExplicitChangeContext - Interface in ptolemy.actor.util
An entity that implements an explicit change context declares a change context, in which parameters are modified.
ExplicitRK23Solver - Class in ptolemy.domains.continuous.kernel.solver
This class implements the Explicit Runge-Kutta 2(3) ODE solving method.
ExplicitRK23Solver() - Constructor for class ptolemy.domains.continuous.kernel.solver.ExplicitRK23Solver
 
ExplicitRK45Solver - Class in ptolemy.domains.continuous.kernel.solver
This class implements a fourth-order Runge-Kutta ODE solving method.
ExplicitRK45Solver() - Constructor for class ptolemy.domains.continuous.kernel.solver.ExplicitRK45Solver
 
ExplicitScope - Class in ptolemy.data.expr
An implementation of ParserScope that includes an explicit list of Variables in the scope.
ExplicitScope(NamedList) - Constructor for class ptolemy.data.expr.ExplicitScope
Construct a new scope that includes the objects in the given list, which must contain only variables.
EXPONENT - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
exponent() - Method in class ptolemy.moml.unit.UParser
 
EXPONENT - Static variable in interface ptolemy.moml.unit.UParserConstants
RegularExpression Id.
exponentialFormat - Static variable in class ptolemy.data.TokenUtilities
The format that is used to print floating point numbers that are very large, or very small.
export(OutputStream) - Method in class ptolemy.plot.PlotBox
Export a EPS description of the plot.
ExportActorArchiveAction - Class in org.kepler.gui.kar
This action saves an actor as a kar file.
ExportActorArchiveAction(TableauFrame) - Constructor for class org.kepler.gui.kar.ExportActorArchiveAction
Constructor
ExportArchiveAction - Class in org.kepler.gui.kar
This action exports a workflow as a kar file.
ExportArchiveAction(TableauFrame) - Constructor for class org.kepler.gui.kar.ExportArchiveAction
Constructor
exportButterfly() - Method in class ptolemy.vergil.basic.export.html.test.junit.ExportToWebJUnitTest
Test the export the Butterfly model.
exportDesignPattern() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Export the current submodel as a design pattern using a method similar to Save As.
exportExecutionChoice(File, String) - Method in class org.kepler.ddp.actor.ExecutionChoice
Export an execution choice to a file.
ExportHTMLAction - Class in ptolemy.vergil.basic.export.html
An Action that works with BasicGraphFrame to export HTML.
ExportHTMLAction(BasicGraphFrame) - Constructor for class ptolemy.vergil.basic.export.html.ExportHTMLAction
Create a new action to export HTML.
exportImage() - Method in class ptolemy.actor.gui.TextEditor
Create a BufferedImage and draw this plot to it.
exportImage(BufferedImage, Rectangle, RenderingHints, boolean) - Method in class ptolemy.actor.gui.TextEditor
Draw this plot onto the specified image at the position of the specified rectangle with the size of the specified rectangle.
exportImage(OutputStream, String) - Method in class ptolemy.actor.gui.TextEditor
Export an image of the plot in the specified format.
exportImage() - Method in class ptolemy.plot.PlotBox
Create a BufferedImage and draw this plot to it.
exportImage(Rectangle) - Method in class ptolemy.plot.PlotBox
Create a BufferedImage the size of the given rectangle and draw this plot to it at the position specified by the rectangle.
exportImage(BufferedImage, Rectangle, RenderingHints, boolean) - Method in class ptolemy.plot.PlotBox
Draw this plot onto the specified image at the position of the specified rectangle with the size of the specified rectangle.
exportImage(BufferedImage) - Method in class ptolemy.plot.PlotBox
Draw this plot onto the provided image.
exportImage(OutputStream, String) - Method in class ptolemy.plot.PlotBox
Export an image of the plot in the specified format.
ExportImageAction(String) - Constructor for class ptolemy.actor.gui.PlotTableauFrame.ExportImageAction
Create a new action to export an image.
ExportImageAction(String) - Constructor for class ptolemy.actor.gui.TextEditor.ExportImageAction
Create a new action to export an image.
ExportImageAction(String) - Constructor for class ptolemy.vergil.basic.BasicGraphFrame.ExportImageAction
Create a new action to export an image.
ExportImageJUnitTest - Class in ptolemy.vergil.basic.test.junit
Test out the Export Image facility, which saves as gif, png, pdf etc.
ExportImageJUnitTest() - Constructor for class ptolemy.vergil.basic.test.junit.ExportImageJUnitTest
 
exportLatex(File) - Method in class ptolemy.plot.PlotBox
Export a Latex description of the plot.
exportLinks(int, Collection) - Method in class ptolemy.kernel.CompositeEntity
Return a sequence of MoML link attributes that describe any link between objects (ports, entities, and relations) that are present in the filter argument.
ExportModel - Class in ptolemy.vergil.basic.export
Export a model as an image or set of html files.
ExportModel() - Constructor for class ptolemy.vergil.basic.export.ExportModel
 
exportModel(boolean, boolean, String, String, boolean, boolean, boolean, String, boolean, boolean) - Method in class ptolemy.vergil.basic.export.ExportModel
Export an image of a model to a file or directory.
exportModel(boolean, boolean, String, String, boolean, boolean, boolean, String, boolean, long, boolean) - Method in class ptolemy.vergil.basic.export.ExportModel
Export an image of a model to a file or directory.
ExportModelJUnitTest - Class in ptolemy.vergil.basic.export.test.junit
JUnit test that exports the demos.
ExportModelJUnitTest() - Constructor for class ptolemy.vergil.basic.export.test.junit.ExportModelJUnitTest
 
ExportModelJUnitTestBatch - Class in ptolemy.vergil.basic.export.test.junit
JUnit test that exports the demos between two indices.
ExportModelJUnitTestBatch() - Constructor for class ptolemy.vergil.basic.export.test.junit.ExportModelJUnitTestBatch
 
ExportModelJUnitTestBatch1 - Class in ptolemy.vergil.basic.export.test.junit
JUnit test that exports the demos between two indices.
ExportModelJUnitTestBatch1() - Constructor for class ptolemy.vergil.basic.export.test.junit.ExportModelJUnitTestBatch1
 
ExportModelJUnitTestBatch2 - Class in ptolemy.vergil.basic.export.test.junit
JUnit test that exports the demos between two indices.
ExportModelJUnitTestBatch2() - Constructor for class ptolemy.vergil.basic.export.test.junit.ExportModelJUnitTestBatch2
 
ExportModelJUnitTestBatch3 - Class in ptolemy.vergil.basic.export.test.junit
JUnit test that exports the demos between two indices.
ExportModelJUnitTestBatch3() - Constructor for class ptolemy.vergil.basic.export.test.junit.ExportModelJUnitTestBatch3
 
ExportModelJUnitTestBatch4 - Class in ptolemy.vergil.basic.export.test.junit
JUnit test that exports the demos between two indices.
ExportModelJUnitTestBatch4() - Constructor for class ptolemy.vergil.basic.export.test.junit.ExportModelJUnitTestBatch4
 
ExportModelJUnitTestBatch5 - Class in ptolemy.vergil.basic.export.test.junit
JUnit test that exports the demos between two indices.
ExportModelJUnitTestBatch5() - Constructor for class ptolemy.vergil.basic.export.test.junit.ExportModelJUnitTestBatch5
 
ExportModelJUnitTestBatch6 - Class in ptolemy.vergil.basic.export.test.junit
JUnit test that exports the demos between two indices.
ExportModelJUnitTestBatch6() - Constructor for class ptolemy.vergil.basic.export.test.junit.ExportModelJUnitTestBatch6
 
ExportModelJUnitTestBatch7 - Class in ptolemy.vergil.basic.export.test.junit
JUnit test that exports the demos between two indices.
ExportModelJUnitTestBatch7() - Constructor for class ptolemy.vergil.basic.export.test.junit.ExportModelJUnitTestBatch7
 
exportMoML(Writer) - Method in interface org.kepler.ddp.actor.pattern.DDPPatternActor
Write a MoML description of this object using the specified Writer.
exportMoML(Writer, int, String) - Method in class org.kepler.moml.DocumentationAttribute
Deprecated.
 
exportMoML(Writer, int, String) - Method in class org.kepler.util.TransientStringAttribute
Here we override the exportMoML method so this attribute and any children of this attribute are not included in the MoML.
exportMoML(Writer, int, String) - Method in class ptolemy.actor.LazyTypedCompositeActor
Write a MoML description of this object with the specified indentation depth and with the specified name substituting for the name of this object.
exportMoML(Writer, int, String) - Method in class ptolemy.data.expr.Parameter
Write a MoML description of this object, unless this object is not persistent.
exportMoML(Writer, int, String) - Method in class ptolemy.domains.modal.modal.ModalModel
Override the base class to remove any unused refinements before exporting.
exportMoML(Writer, int, String) - Method in class ptolemy.kernel.CompositeEntity
Override the base class to initialize a data structure that can capture and then export level-crossing links deeply contained structure within.
exportMoML(Writer, int, String) - Method in class ptolemy.kernel.InstantiableNamedObj
Write a MoML description of this object with the specified indentation depth and with the specified name substituting for the name of this object.
exportMoML(Writer, int, String) - Method in class ptolemy.kernel.util.DecoratorAttributes
Override the base class to first set the decoratorName attribute to the current name of the associated decorator, and then export using the superclass.
exportMoML(Writer, int, String) - Method in class ptolemy.kernel.util.Location
Write a MoML description of this object.
exportMoML() - Method in interface ptolemy.kernel.util.MoMLExportable
Return a MoML description of this object.
exportMoML(String) - Method in interface ptolemy.kernel.util.MoMLExportable
Return a MoML description of this object with its name replaced by the specified name.
exportMoML(Writer) - Method in interface ptolemy.kernel.util.MoMLExportable
Write a MoML description of this object using the specified Writer.
exportMoML(Writer, int) - Method in interface ptolemy.kernel.util.MoMLExportable
Write a MoML description of this entity with the specified depth in a hierarchy.
exportMoML(Writer, int, String) - Method in interface ptolemy.kernel.util.MoMLExportable
Write a MoML description of this entity with the specified depth in a hierarchy and with the specified name substituting for the name of this object.
exportMoML() - Method in class ptolemy.kernel.util.NamedObj
Get a MoML description of this object.
exportMoML(String) - Method in class ptolemy.kernel.util.NamedObj
Get a MoML description of this object with its name replaced by the specified name.
exportMoML(Writer) - Method in class ptolemy.kernel.util.NamedObj
Write a MoML description of this object using the specified Writer.
exportMoML(Writer, int) - Method in class ptolemy.kernel.util.NamedObj
Write a MoML description of this entity with the specified indentation depth.
exportMoML(Writer, int, String) - Method in class ptolemy.kernel.util.NamedObj
Write a MoML description of this object with the specified indentation depth and with the specified name substituting for the name of this object.
exportMoML(Writer, int, String) - Method in class ptolemy.kernel.util.StringAttribute
Write a MoML description of this object, unless it is non-persistent.
exportMoML(Writer, int, String) - Method in class ptolemy.moml.Documentation
Write a MoML description of this object with the specified indentation depth.
exportMoML(Writer, int, String) - Method in class ptolemy.moml.ImportAttribute
Deprecated.
Write a MoML description of this object, which in this case is an "import" element.
exportMoML(Writer, int, String) - Method in class ptolemy.moml.MoMLAttribute
Write a MoML description of this object, which in this case is whatever has been specified by the setMoMLDescription() method.
exportMoML(Writer, int, String) - Method in class ptolemy.moml.unit.UnitAttribute
Write a MoML description of the UnitsAttribute.
exportMoML(Writer, int, String) - Method in class ptolemy.moml.Vertex
Write a MoML description of this object.
exportMoML(Writer, int, String) - Method in class ptolemy.vergil.actor.LayoutHint
Write a MoML description of this object.
exportMoML(Writer, int, String) - Method in class ptolemy.vergil.basic.KeplerDocumentationAttribute
Write a MoML description of this object with the specified indentation depth and with the specified name substituting for the name of this object.
exportMoML(Writer, String) - Method in class ptolemy.vergil.toolbox.GraphicElement
Write the GraphicElement in XML format to the given writer.
exportMoMLPlain() - Method in class ptolemy.kernel.util.NamedObj
Get a MoML description of this object without any XML headers.
ExportParameters - Class in ptolemy.vergil.basic
A data structure containing parameters for exporting a Ptolemy model to a web page.
ExportParameters() - Constructor for class ptolemy.vergil.basic.ExportParameters
Construct an instance of this data structure with default values, which are null for backgroundColor, false for copyJavaScriptFiles, null for directoryToExportTo, false for openCompositesBeforeExport, false for runBeforeExport, and true for showInBrowser.
ExportParameters(File) - Constructor for class ptolemy.vergil.basic.ExportParameters
Construct an instance of this data structure with default values, which are null for backgroundColor, false for copyJavaScriptFiles, false for deleteFilesOnExit, false for openCompositesBeforeExport, false for runBeforeExport, true for showInBrowser, and empty String for HTMLPathForFiles.
ExportParameters(File, ExportParameters) - Constructor for class ptolemy.vergil.basic.ExportParameters
Construct an instance of this data structure that is identical to the one given except for directoryToExportTo, which is as specified.
exportProvenance(String, boolean) - Static method in class org.kepler.provenance.manager.ProvenanceManager
Export all runs to a KAR file.
exportProvenance(String, boolean, int) - Static method in class org.kepler.provenance.manager.ProvenanceManager
Export a set of provenance runs to a KAR file.
exportProvenance(String, boolean, List<KeplerLSID>) - Static method in class org.kepler.provenance.manager.ProvenanceManager
Export a set of provenance runs to a KAR file.
exportProvenance(String, boolean, List<KeplerLSID>, String) - Static method in class org.kepler.provenance.manager.ProvenanceManager
Export a set of provenance runs to a KAR file.
exportROBundle(String, KeplerLSID) - Static method in class org.kepler.provenance.manager.ProvenanceManager
Export a research object bundle
ExportRunsArchiveAction - Class in org.kepler.workflowrunmanager.gui.kar
 
ExportRunsArchiveAction(TableauFrame, List<KeplerLSID>, String) - Constructor for class org.kepler.workflowrunmanager.gui.kar.ExportRunsArchiveAction
 
ExportRunsToKAR - Class in org.kepler.kar
This class allows for exporting runs to a KAR without user interaction
ExportRunsToKAR(Queryable, KeplerLSID) - Constructor for class org.kepler.kar.ExportRunsToKAR
Constructor
exportRunsToKAR(List<KeplerLSID>, File, boolean, boolean) - Method in class org.kepler.kar.ExportRunsToKAR
Export a list of runs and their associated workflow MoML into a KAR.
exportSemanticAnnotation(Entity) - Static method in class org.kepler.sms.SMSServices
 
exportSubmodel(Writer, int, String) - Method in class ptolemy.domains.modal.kernel.FSMActor
Write this FSMActor into the output writer as a submodel.
exportToPlot(PrintWriter, String) - Method in class ptolemy.plot.Histogram
Write plot data information to the specified output stream in PlotML, but in such a way that the Plot class can read it and reproduce the histogram.
exportToWeb(BasicGraphFrame, ExportParameters) - Static method in class ptolemy.vergil.basic.export.html.ExportHTMLAction
Export an HTML page and associated subpages for the specified graph frame as given by the parameters.
ExportToWebJUnitTest - Class in ptolemy.vergil.basic.export.html.test.junit
Test out export to web facility.
ExportToWebJUnitTest() - Constructor for class ptolemy.vergil.basic.export.html.test.junit.ExportToWebJUnitTest
 
exportWorkflow(String, KeplerLSID) - Static method in class org.kepler.provenance.manager.ProvenanceManager
Export a workflow to a file.
expression - Variable in class org.dart.matlab.MatlabExpression
The expression that is evaluated : Matlab Function or Script from the parameter dialog box or input port.
expression - Variable in class org.ecoinformatics.seek.R.RExpression
The expression that is evaluated to produce the output.
expression - Variable in class org.ecoinformatics.seek.R.RExpression2
The expression that is evaluated to produce the output.
expression - Variable in class org.kepler.gis.actor.VectorFilter
The ECQL expression used to filter the feature set.
Expression - Class in ptolemy.actor.lib
On each firing, evaluate an expression that may include references to the inputs, current time, and a count of the firing.
Expression(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Expression
Construct an actor with the given container and name.
expression - Variable in class ptolemy.actor.lib.Expression
The expression that is evaluated to produce the output.
expression - Variable in class ptolemy.actor.lib.r.RExpression
The expression that is evaluated to produce the output.
expression - Variable in class ptolemy.actor.lib.r.RExpression2
The expression that is evaluated to produce the output.
expression() - Method in class ptolemy.data.expr.PtParser
 
Expression - Class in ptolemy.matlab
On each firing send an expression for evaluation to a matlab Engine.
Expression(CompositeEntity, String) - Constructor for class ptolemy.matlab.Expression
Construct an actor with the given container and name.
expression - Variable in class ptolemy.matlab.Expression
The parameter that is evaluated to produce the output.
EXPRESSION_LANGUAGE - Static variable in class ptolemy.math.Precision
static ExpressionLanguagePrecisionFormat object.
ExpressionFunction - Class in ptolemy.data.expr
An implementation of a function closure that encapsulates an expression tree.
ExpressionFunction(List, Type[], ASTPtRootNode) - Constructor for class ptolemy.data.expr.ExpressionFunction
Construct a function closure that encapsulates an expression tree.
ExpressionLanguagePrecisionFormat() - Constructor for class ptolemy.math.Precision.ExpressionLanguagePrecisionFormat
 
ExpressionReader - Class in ptolemy.actor.lib.io
Deprecated.
Use LineReader and ExpressionToToken.
ExpressionReader(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.io.ExpressionReader
Deprecated.
Construct an actor with the given container and name.
ExpressionShellEffigy - Class in ptolemy.actor.gui
A representative of an expression shell.
ExpressionShellEffigy(Workspace) - Constructor for class ptolemy.actor.gui.ExpressionShellEffigy
Create a new effigy in the specified workspace with an empty string for its name.
ExpressionShellEffigy(CompositeEntity, String) - Constructor for class ptolemy.actor.gui.ExpressionShellEffigy
Create a new effigy in the given container with the given name.
ExpressionShellEffigy.ShellFactory - Class in ptolemy.actor.gui
A factory for creating new Ptolemy effigies.
ExpressionShellFrame - Class in ptolemy.actor.gui
A frame that provides an interactive shell for evaluating expressions.
ExpressionShellFrame(ExpressionShellTableau) - Constructor for class ptolemy.actor.gui.ExpressionShellFrame
Construct a frame to display the ExpressionShell window.
ExpressionShellTableau - Class in ptolemy.actor.gui
A tableau that provides an interactive shell for evaluating expressions.
ExpressionShellTableau(ExpressionShellEffigy, String) - Constructor for class ptolemy.actor.gui.ExpressionShellTableau
Create a new tableau.
ExpressionShellTableau.Factory - Class in ptolemy.actor.gui
A factory that creates a control panel to display an Expression Shell.
ExpressionToToken - Class in ptolemy.actor.lib.conversions
This actor reads a string expression from the input port and outputs the token resulting from the evaluation.
ExpressionToToken(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.conversions.ExpressionToToken
Construct an actor with the given container and name.
ExpressionWriter - Class in ptolemy.actor.lib.io
Deprecated.
Use TokenToExpression followed by LineWriter.
ExpressionWriter(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.io.ExpressionWriter
Deprecated.
Construct an actor with the given container and name.
Ext - Variable in class org.sdm.spa.ProcessFileRT
 
ExtendedGraphFrame - Class in ptolemy.vergil.basic
An graph view for ptolemy models extended with the capability to display the model in full-screen mode.
ExtendedGraphFrame(CompositeEntity, Tableau) - Constructor for class ptolemy.vergil.basic.ExtendedGraphFrame
Construct a frame associated with the specified Ptolemy II model.
ExtendedGraphFrame(CompositeEntity, Tableau, LibraryAttribute) - Constructor for class ptolemy.vergil.basic.ExtendedGraphFrame
Construct a frame associated with the specified Ptolemy II model.
ExtendedGraphFrame.FullScreenAction - Class in ptolemy.vergil.basic
An action to display in full-screen mode.
ExtendedMath - Class in ptolemy.math
ExtendedMath is a library of additional mathematical operations beyond those provided by the Java Math class.
ExtendedMath() - Constructor for class ptolemy.math.ExtendedMath
 
EXTENSION - Static variable in class org.kepler.kar.KARFile
This is the File extension to be used for KAR files.
ExtensionFilenameFilter - Class in ptolemy.gui
An implementation of both javax.swing.filechooser.FileFilter and java.io.FilenameFilter that only accepts files that have one of the registered extensions.
ExtensionFilenameFilter(List<String>) - Constructor for class ptolemy.gui.ExtensionFilenameFilter
Construct a file filter that filters out all files that do not have one of the extensions in the given list.
ExtensionFilenameFilter(String[]) - Constructor for class ptolemy.gui.ExtensionFilenameFilter
Construct a file filter that filters out all files that do not have one of the extensions in the given list.
ExtensionFilenameFilter(String, String...) - Constructor for class ptolemy.gui.ExtensionFilenameFilter
Creates a filter that accepts the given file type, specified by a number of extensions and a meaningful description of the file types involved.
ExtensionFilenameFilter(String[], String) - Constructor for class ptolemy.gui.ExtensionFilenameFilter
Creates a filter that accepts the given file type, specified by a number of extensions and a meaningful description of the file types involved.
extensionToSyntaxStyle(String) - Static method in class ptolemy.actor.gui.TextEffigy
Return the syntax style to use for files with the given extension.
extent - Variable in class ptolemy.vergil.kernel.attributes.ArcAttribute
The angular extent of the angle of the arc in degrees.
EXTERNAL - Static variable in class org.kepler.objectmanager.cache.DataCacheFileObject
 
ExternalIOPortController - Class in ptolemy.vergil.actor
This class provides interaction with nodes that represent Ptolemy II ports inside a composite.
ExternalIOPortController(GraphController) - Constructor for class ptolemy.vergil.actor.ExternalIOPortController
Create a port controller associated with the specified graph controller.
ExternalIOPortController(GraphController, AttributeController.Access) - Constructor for class ptolemy.vergil.actor.ExternalIOPortController
Create a port controller associated with the specified graph controller.
ExternalIOPortController.PortRenderer - Class in ptolemy.vergil.actor
Render the external ports of a graph as a 5-sided tab thingy.
externallyEnabledDestinations(State, String) - Method in class ptolemy.domains.modal.kernel.ia.InterfaceAutomaton
Return the set of externally enabled destination states.
externallyEnabledInputTransitionLabels(State) - Method in class ptolemy.domains.modal.kernel.ia.InterfaceAutomaton
Return the labels for the set of externally enabled input transitions for the specified state.
externallyEnabledOutputTransitionLabels(State) - Method in class ptolemy.domains.modal.kernel.ia.InterfaceAutomaton
Return the labels for the set of externally enabled output transitions for the specified state.
ExternalPortModel() - Constructor for class ptolemy.vergil.actor.ActorGraphModel.ExternalPortModel
 
ExternalTextEffigy - Class in ptolemy.actor.gui
An external EDITOR-based effigy for a text file (see ExternalTextTableau).
ExternalTextEffigy(Workspace) - Constructor for class ptolemy.actor.gui.ExternalTextEffigy
Create a new effigy in the specified workspace with an empty string for its name.
ExternalTextEffigy(CompositeEntity, String) - Constructor for class ptolemy.actor.gui.ExternalTextEffigy
Create a new effigy in the given directory with the given name.
ExternalTextTableau - Class in ptolemy.actor.gui
A tableau representing an external text editor (for now emacs only, with the gnuserv package installed).
ExternalTextTableau(TextEffigy, String) - Constructor for class ptolemy.actor.gui.ExternalTextTableau
Construct a new tableau for the model represented by the given effigy.
extract(ArrayToken) - Method in class ptolemy.data.ArrayToken
Extract a non-contiguous subarray either by giving a boolean array of the same length of this array describing which elements to include and which to include, or by giving an an array of an arbitrary length giving the indices of elements from this array to include in the subarray.
extractActorMetadata(File) - Static method in class org.kepler.moml.KeplerMetadataExtractor
 
extractActorMetadata(File, boolean) - Static method in class org.kepler.moml.KeplerMetadataExtractor
 
extractActorMetadata(InputStream) - Static method in class org.kepler.moml.KeplerMetadataExtractor
Get the metadata from an input stream.
extractActorMetadata(InputStream, boolean) - Static method in class org.kepler.moml.KeplerMetadataExtractor
Get the metadata from an input stream optionally printing output if a parsing error occurs.
ExtractColumns - Class in org.kepler.spark.mllib
Takes a JavaRDD dataset, an array of column indices and a separator string.
ExtractColumns(CompositeEntity, String) - Constructor for class org.kepler.spark.mllib.ExtractColumns
 
ExtractFieldType - Class in ptolemy.actor.util
A partial monotonic function of the given port that returns a type associated with the given field name, to be found in the type definition of the port.
ExtractFieldType(TypedIOPort, String) - Constructor for class ptolemy.actor.util.ExtractFieldType
Construct a new monotonic function.
extractJarFile(String, String) - Static method in class ptolemy.util.FileUtilities
Extract a jar file into a directory.
extractJarFileIfNecessary(String, String) - Static method in class ptolemy.util.FileUtilities
If necessary, unjar the entire jar file that contains a target file.
extractLength - Variable in class ptolemy.actor.lib.ArrayExtract
The length of the segment of the input array that is copied to the output.
ExtractPolygons - Class in org.kepler.gis.actor
An actor that converts a raster to a feature data set by extracting the polygons.
ExtractPolygons(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.ExtractPolygons
 
extractTarFile(String, File) - Static method in class org.ecoinformatics.seek.datasource.EcogridTarArchivedDataCacheItem
This method will untar a given file to destination dir
extrapolate(Time) - Method in class ptolemy.data.SmoothToken
Return a SmoothToken at the specified time whose value and derivatives are the result of extrapolating this token to the specified time.

F

factor - Variable in class ptolemy.actor.lib.Scale
The factor.
factor - Variable in class ptolemy.domains.sdf.lib.DownSample
The number of input tokens to read per output token produced.
factor - Variable in class ptolemy.domains.sdf.lib.UpSample
The number of output tokens to produced per input token read.
factor() - Method in class ptolemy.moml.unit.Unit
Factor a Unit into a UnitExpr that has UnitTerms that are in the Library.
Factory(NamedObj, String) - Constructor for class org.ecoinformatics.seek.ecogrid.EcogridPreferencesTab.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.ecoinformatics.seek.ecogrid.quicksearch.DatasetPanel.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.ecoinformatics.seek.ecogrid.ServicesListModificationPanel.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.ddp.gui.ExecutionChoiceEditorPane.Factory
 
Factory(NamedObj, String) - Constructor for class org.kepler.ddp.gui.ExecutionChoiceGraphTableau.Factory
Create an factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.gui.BasicLibraryPane.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.gui.ClassicViewPane.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.gui.ComponentLibraryPreferencesTab.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.gui.ComponentLibraryTab.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.gui.DefaultViewPane.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.gui.DualVerticalViewPane.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.gui.frame.CaseGraphTableau.Factory
Create an factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.gui.frame.KeplerGraphTableau.Factory
Create an factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.gui.frame.TabbedKeplerGraphTableau.Factory
Create an factory with the given name and container.
Factory(CompositeEntity, String) - Constructor for class org.kepler.gui.kar.KAREffigy.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.gui.kar.KARPreferencesTab.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.gui.KeplerContextMenuFactory.Factory
Create an factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.gui.KeplerSchematicContextMenuFactory.Factory
Create an factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.gui.PlotsEditorPanel.Factory
 
Factory(NamedObj, String) - Constructor for class org.kepler.gui.ResultHighlighter.Factory
Create an factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.gui.ResultTreeRebuilder.Factory
Create an factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.gui.ScrollBarModifier.Factory
Create an factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.gui.SingleViewPane.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.gui.TabPaneExtensionExample.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.gui.WorkflowOutlineTabPane.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.kar.handlers.ActorMetadataKAREntryHandler.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.kar.handlers.JARKAREntryHandler.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.kar.handlers.ModuleTxtKAREntryHandler.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.kar.handlers.ProvKAREntryHandler.Factory
 
Factory(NamedObj, String) - Constructor for class org.kepler.kar.handlers.ReportInstanceKAREntryHandler.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.kar.handlers.ReportLayoutKAREntryHandler.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.kar.handlers.WorkflowRunEntryHandler.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.objectmanager.cache.browser.CacheViewerTabPane.Factory
Create a factory with the given name and container.
Factory(CompositeEntity, String) - Constructor for class org.kepler.objectmanager.data.db.QBEffigy.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.profiling.gui.ActorFireOutlineTabPane.Factory
 
Factory(NamedObj, String) - Constructor for class org.kepler.profiling.gui.CurrentExecutionPanel.Factory
 
Factory(NamedObj, String) - Constructor for class org.kepler.profiling.gui.PortIOOutlineTabPane.Factory
 
Factory(NamedObj, String) - Constructor for class org.kepler.profiling.gui.PreviousExecutionPanel.Factory
 
Factory(NamedObj, String) - Constructor for class org.kepler.reporting.gui.ItemsOfInterestPanel.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.reporting.gui.PropertiesPanel.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.reporting.gui.ReportDesignerPanel.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.reporting.gui.ReportViewerPanel.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.reporting.gui.ReportViewerTOC.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.workflowrunmanager.gui.WorkflowRunManagerPanel.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.workflowscheduler.gui.configurationwizard.WorkflowRunEnginePreferenceTab.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.kepler.workflowscheduler.gui.configurationwizard.WorkflowSchedulerPreferenceTab.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class org.sdm.spa.gui.DoubleShellTAPTableau.Factory
Create a factory with the given name and container.
Factory(CompositeEntity, String) - Constructor for class ptolemy.actor.gui.BrowserEffigy.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class ptolemy.actor.gui.BrowserTableau.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class ptolemy.actor.gui.Console.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class ptolemy.actor.gui.exec.ExecShellTableau.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class ptolemy.actor.gui.ExpressionShellTableau.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class ptolemy.actor.gui.HTMLViewerTableau.Factory
Create a factory with the given name and container.
Factory(CompositeEntity, String) - Constructor for class ptolemy.actor.gui.ImageTokenEffigy.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class ptolemy.actor.gui.JVMTableau.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class ptolemy.actor.gui.MatrixTokenTableau.Factory
Create a factory with the given name and container.
Factory(CompositeEntity, String) - Constructor for class ptolemy.actor.gui.PlotEffigy.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class ptolemy.actor.gui.PlotTableau.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class ptolemy.actor.gui.ptjacl.TclShellTableau.Factory
Create a factory with the given name and container.
Factory(CompositeEntity, String) - Constructor for class ptolemy.actor.gui.PtolemyEffigy.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class ptolemy.actor.gui.python.PythonShellTableau.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class ptolemy.actor.gui.run.InterfaceTableau.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class ptolemy.actor.gui.RunTableau.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class ptolemy.actor.gui.test.SimpleTableau.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class ptolemy.actor.gui.TextEditorTableau.Factory
Create a factory with the given name and container.
Factory(NamedObj, String, String) - Constructor for class ptolemy.actor.gui.TextEditorTableau.Factory
Create a factory with the given name and container and syntax style.
Factory(CompositeEntity, String) - Constructor for class ptolemy.actor.gui.TextEffigy.Factory
Create a factory with the given name and container.
Factory(CompositeEntity, String) - Constructor for class ptolemy.actor.gui.TokenEffigy.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class ptolemy.actor.gui.TokenTableau.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class ptolemy.actor.lib.image.ImageTableau.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class ptolemy.vergil.actor.ActorGraphTableau.Factory
Create an factory with the given name and container.
Factory(CompositeEntity, String) - Constructor for class ptolemy.vergil.actor.DocBuilderEffigy.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class ptolemy.vergil.actor.DocBuilderTableau.Factory
Create a factory with the given name and container.
Factory(CompositeEntity, String) - Constructor for class ptolemy.vergil.actor.DocEffigy.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class ptolemy.vergil.actor.DocTableau.Factory
Create a factory with the given name and container.
Factory(NamedObj, String) - Constructor for class ptolemy.vergil.icon.EditIconTableau.Factory
Create an factory with the given name and container.
Factory(NamedObj, String) - Constructor for class ptolemy.vergil.modal.CaseGraphTableau.Factory
Create an factory with the given name and container.
Factory(NamedObj, String) - Constructor for class ptolemy.vergil.modal.FSMGraphTableau.Factory
Create an factory with the given name and container.
Factory(NamedObj, String) - Constructor for class ptolemy.vergil.modal.ia.InterfaceAutomatonGraphTableau.Factory
Create an factory with the given name and container.
Factory(NamedObj, String) - Constructor for class ptolemy.vergil.tree.TreeTableau.Factory
Create an factory with the given name and container.
FactoryWithoutNew(CompositeEntity, String) - Constructor for class ptolemy.actor.gui.PtolemyEffigy.FactoryWithoutNew
Create a factory with the given name and container.
failed - Variable in class org.kepler.actor.ssh.SshSession
Boolean output to indicate whether the connection opening failed.
FAILURE - Static variable in interface org.kepler.authentication.AuthenticationListener
 
FALSE - Static variable in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
 
FALSE - Static variable in class ptolemy.data.BooleanToken
False-valued token.
FALSE - Static variable in class ptolemy.domains.modal.kernel.RelationType
Relation type a relation node that is evaluated to be fale while the relation operation is not equal or inequal.
falseInput - Variable in class ptolemy.actor.lib.BooleanMultiplexor
Input for tokens on the false path.
falseInput - Variable in class ptolemy.actor.lib.BooleanSelect
Input for tokens on the false path.
falseInput - Variable in class ptolemy.actor.lib.ConfigurationSelect
Input for tokens on the false path.
falseInput - Variable in class ptolemy.domains.ddf.lib.DDFBooleanSelect
Input for tokens on the false path.
falseInput_tokenConsumptionRate - Variable in class ptolemy.actor.lib.BooleanSelect
This parameter provides token consumption rate for falseInput.
falseInput_tokenConsumptionRate - Variable in class ptolemy.actor.lib.ConfigurationSelect
This parameter provides token consumption rate for falseInput.
falseInput_tokenConsumptionRate - Variable in class ptolemy.domains.ddf.lib.DDFBooleanSelect
This parameter provides token consumption rate for falseInput.
falseOutput - Variable in class ptolemy.actor.lib.BooleanSwitch
Output for tokens on the false path.
falseOutput - Variable in class ptolemy.actor.lib.ConfigurationSwitch
Output for tokens on the false path.
falseOutput_tokenProductionRate - Variable in class ptolemy.actor.lib.ConfigurationSwitch
This parameter provides token consumption rate for falseOutput.
falseValue - Variable in class ptolemy.actor.lib.conversions.BooleanToAnything
The value produced at the output when a false input is read.
FASTACounter - Class in org.sdm.spa
On each firing, output the number of FASTA entries in a file.
FASTACounter(CompositeEntity, String) - Constructor for class org.sdm.spa.FASTACounter
Construct a FASTACounter source with the given container and name.
FASTAFileReader - Class in org.kepler.bio.hadoop.input
A class that provides a multiple sequence reader from an input stream.
FASTAFileReader(InputStream) - Constructor for class org.kepler.bio.hadoop.input.FASTAFileReader
Create a line reader that reads from the given stream using the default buffer-size (64k).
FASTAFileReader(InputStream, int) - Constructor for class org.kepler.bio.hadoop.input.FASTAFileReader
Create a line reader that reads from the given stream using the given buffer-size.
FASTAFileReader(InputStream, Configuration) - Constructor for class org.kepler.bio.hadoop.input.FASTAFileReader
Create a line reader that reads from the given stream using the io.file.buffer.size specified in the given Configuration.
FASTAInputFormat - Class in org.kepler.bio.hadoop.input
This class extend FileInputFormat class to read multiple sequence in each map function.
FASTAInputFormat() - Constructor for class org.kepler.bio.hadoop.input.FASTAInputFormat
 
FASTAInputFormat - Class in org.kepler.bio.stratosphere.input
This Input Format is to read fasta sequence file and generate key value pair records.
FASTAInputFormat() - Constructor for class org.kepler.bio.stratosphere.input.FASTAInputFormat
 
FASTAInputFormatBySize - Class in org.kepler.bio.stratosphere.input
This Input Format is to read fasta sequence file and generate key value pair records.
FASTAInputFormatBySize() - Constructor for class org.kepler.bio.stratosphere.input.FASTAInputFormatBySize
 
FASTARecordReader - Class in org.kepler.bio.hadoop.input
This class treats keys as file paths and value as sequence.
FASTARecordReader() - Constructor for class org.kepler.bio.hadoop.input.FASTARecordReader
 
FastaValidation - Class in org.camera.service
This actor reads a fasta file and user can select whether it contains 'PROTEIN', 'DNA', or 'RNA' sequences.
FastaValidation(CompositeEntity, String) - Constructor for class org.camera.service.FastaValidation
 
Fastq2Fasta - Class in org.camera.service
This actor converts fastq file to fasta format.
Fastq2Fasta(CompositeEntity, String) - Constructor for class org.camera.service.Fastq2Fasta
 
fDragSource - Variable in class org.mlc.swing.layout.DndList
 
fDragSource - Variable in class ptolemy.actor.gui.run.PaletteList
The source of the drag.
FeatureServiceUtilities - Class in org.kepler.gis.arcgis
Utilities for working with ArcGIS FeatureService.
fetchedFiles - Variable in class org.srb.DataGridTransfer
Paths to the destination
fetchedFiles - Variable in class org.srb.SGet
Paths to the local location.
FFT - Class in ptolemy.domains.sdf.lib
This actor calculates the Fast Fourier Transform of a sequence of complex inputs.
FFT(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.FFT
Construct an actor with the given container and name.
FFT(Complex[]) - Static method in class ptolemy.math.SignalProcessing
Return a new array of complex numbers which is the FFT of an input array of complex numbers.
FFT(Complex[], int) - Static method in class ptolemy.math.SignalProcessing
Return a new array of complex numbers which is the FFT of an input array of complex numbers.
FFTComplexOut(Complex[]) - Static method in class ptolemy.math.SignalProcessing
Return a new array of Complex's which is the forward FFT of an input array of Complex's.
FFTComplexOut(Complex[], int) - Static method in class ptolemy.math.SignalProcessing
Return a new array of Complex's which is the forward FFT of an input array of Complex's.
FFTComplexOut(double[]) - Static method in class ptolemy.math.SignalProcessing
Return a new array of Complex's which is the forward FFT of a real input array of doubles.
FFTComplexOut(double[], int) - Static method in class ptolemy.math.SignalProcessing
Return a new array of Complex's which is the forward FFT of a real input array of doubles.
FFTImagOut(Complex[]) - Static method in class ptolemy.math.SignalProcessing
Return a new array of doubles which is the imaginary part of the FFT of an input array of Complex's.
FFTImagOut(Complex[], int) - Static method in class ptolemy.math.SignalProcessing
Return a new array of doubles which is the imaginary part of the FFT of an input array of Complex's.
FFTImagOut(double[]) - Static method in class ptolemy.math.SignalProcessing
Return a new array of doubles that is the imaginary part of the FFT of the real input array of doubles.
FFTImagOut(double[], int) - Static method in class ptolemy.math.SignalProcessing
Return a new array of doubles that is the imaginary part of the FFT of the real input array of doubles.
FFTRealOut(Complex[]) - Static method in class ptolemy.math.SignalProcessing
Return a new array of doubles which is the real part of the forward FFT of an input array of Complex's.
FFTRealOut(Complex[], int) - Static method in class ptolemy.math.SignalProcessing
Return a new array of doubles which is the real part of the forward FFT of an input array of Complex's.
FFTRealOut(double[]) - Static method in class ptolemy.math.SignalProcessing
Return a new array of doubles that is the real part of the FFT of the real input array of doubles.
FFTRealOut(double[], int) - Static method in class ptolemy.math.SignalProcessing
Return a new array of doubles that is the real part of the FFT of the real input array of doubles.
field(Class<? extends Value>, int) - Method in class org.kepler.stratosphere.io.output.TokenOutputFormat.AbstractConfigBuilder
Adds a field of the record to be serialized to the output.
FIELD_TYPE_PARAMETER_PREFIX - Static variable in class org.kepler.stratosphere.io.output.TokenOutputFormat
 
FieldChooser - Class in org.ecoinformatics.seek.util
 
FieldChooser(CompositeEntity, String) - Constructor for class org.ecoinformatics.seek.util.FieldChooser
Construct an actor with the given container and name.
fieldInSet - Variable in class org.geon.TransitiveClosureDBQuery
Field in set condition field
fields - Variable in class ptolemy.vergil.icon.TableIcon
The fields to display in the table.
FIELDSEPATATOR - Static variable in class org.ecoinformatics.seek.dataquery.DBTablesGenerator
 
FIFOQueue - Class in ptolemy.actor.util
A first-in, first-out (FIFO) queue with variable capacity and optional history.
FIFOQueue() - Constructor for class ptolemy.actor.util.FIFOQueue
Construct an empty queue with no container.
FIFOQueue(Nameable) - Constructor for class ptolemy.actor.util.FIFOQueue
Construct an empty queue with the specified container.
FIFOQueue(FIFOQueue) - Constructor for class ptolemy.actor.util.FIFOQueue
Copy constructor.
FIFOQueueTest - Class in ptolemy.actor.util.test
This class is a test for the case whre FIFOQueue.clone() does not call super.clone().
FIFOQueueTest() - Constructor for class ptolemy.actor.util.test.FIFOQueueTest
 
FigureAction - Class in ptolemy.vergil.toolbox
An action that is attached to a figure on a named object.
FigureAction(String) - Constructor for class ptolemy.vergil.toolbox.FigureAction
Construct an action that is attached to a figure on a named object.
FigureAction.SourceType - Class in ptolemy.vergil.toolbox
The source of the action.
FigureUpdater - Class in org.kepler.monitor
Updates a figure used for monitoring.
FigureUpdater() - Constructor for class org.kepler.monitor.FigureUpdater
Creates a figure updater.
file - Variable in class org.kepler.gis.actor.farsite.GenerateWindFile
The name of the output file.
file - Variable in class org.kepler.gis.actor.proj.GetProjection
The input file.
file - Variable in class org.resurgence.actor.SimpleFileReader
The input port, which gives the file name from which to read.
file - Variable in class org.sdm.spa.ArchiveCounter
File info record as outputted by org.kepler.actor.io.SshDirectoryList: {name=<filename>, size=<size in bytes>, date=<date in UTC seconds>}
file - Variable in class ptolemy.actor.lib.Dictionary
If a file is given here, it will be read upon initialization (if it exists and can be parsed as an array of arrays of tokens) to initialize the dictionary.
FileArrayPrinter - Class in org.resurgence.actor
This actor reads a directory and writes a string array of the non-hidden, readable files in it, including their path names.
FileArrayPrinter(CompositeEntity, String) - Constructor for class org.resurgence.actor.FileArrayPrinter
Construct a FileArrayPrinter with the given container and name.
FileAttribute - Class in ptolemy.kernel.attributes
Deprecated.
Use FileParameter instead.
FileAttribute(NamedObj, String) - Constructor for class ptolemy.kernel.attributes.FileAttribute
Deprecated.
Construct an attribute with the given name contained by the specified container.
FileChooserQuery - Class in ptolemy.gui.demo
Demonstration of the addFileChooser() method in Query.
FileChooserQuery() - Constructor for class ptolemy.gui.demo.FileChooserQuery
Constructor.
FileChooserStyle - Class in ptolemy.actor.gui.style
This attribute annotates user settable attributes to specify that the value of the parameter can be optionally given using a FileChooser.
FileChooserStyle() - Constructor for class ptolemy.actor.gui.style.FileChooserStyle
Construct an attribute in the default workspace with an empty string as its name.
FileChooserStyle(Workspace) - Constructor for class ptolemy.actor.gui.style.FileChooserStyle
Construct an attribute in the given workspace with an empty string as its name.
FileChooserStyle(NamedObj, String) - Constructor for class ptolemy.actor.gui.style.FileChooserStyle
Construct an attribute with the specified container and name.
fileContent - Variable in class org.sdm.spa.BrowserUI
Content of the file.
FileContentInputFormat - Class in org.kepler.hadoop.io.input
This class provides InputFormat to read files.
FileContentInputFormat() - Constructor for class org.kepler.hadoop.io.input.FileContentInputFormat
 
FileContentRecordReader - Class in org.kepler.hadoop.io.input
This class provides InputFormat to read files.
FileContentRecordReader() - Constructor for class org.kepler.hadoop.io.input.FileContentRecordReader
 
FileCopier - Class in org.kepler.actor.ssh
Connects to a remote host using Ssh protocol (or does nothing for the local host) and copies a file to or from there.
FileCopier(CompositeEntity, String) - Constructor for class org.kepler.actor.ssh.FileCopier
Construct an ExecuteCmd actor with the given container and name.
FileCopier - Class in org.resurgence.actor
This actor copies a file with path name into a directory that is given via a port or as a parameter.
FileCopier(CompositeEntity, String) - Constructor for class org.resurgence.actor.FileCopier
Construct a FileCopier with the given container and name.
FileCopierBase - Class in org.sdm.spa.actors.transport
This class provides functionality to copy files between two machine using SSH.
FileCopierBase() - Constructor for class org.sdm.spa.actors.transport.FileCopierBase
 
FileCopierBase.CopyResult - Class in org.sdm.spa.actors.transport
Object that contains the exit code and (error) message associated with the copy operation.
FileCopierFactory - Class in org.sdm.spa.actors.transport
Factory class to return a FileCopier class specific to the protocol passed
FileCopierFactory() - Constructor for class org.sdm.spa.actors.transport.FileCopierFactory
 
FileCopy - Class in org.geon
This actor copies a source file to a destination file and outputs the destination file URL.
FileCopy(CompositeEntity, String) - Constructor for class org.geon.FileCopy
Construct an actor with the given container and name.
FileDataSink - Class in org.kepler.spark.operator
A data sink that writes to files.
FileDataSink(Class<? extends FileOutputFormat<?, ?>>, URI, String) - Constructor for class org.kepler.spark.operator.FileDataSink
Create a new FileDataSink.
FileDataSource - Class in org.kepler.spark.operator
A data sink that reads from files.
FileDataSource(Class<? extends FileInputFormat<?, ?>>, URI, String) - Constructor for class org.kepler.spark.operator.FileDataSource
Create a new FileDataSource.
FileDeleter - Class in org.kepler.actor.io
Delete a file or directory.
FileDeleter(CompositeEntity, String) - Constructor for class org.kepler.actor.io.FileDeleter
Construct an actor with the given container and name.
FileEditorTableauFactory - Class in ptolemy.vergil.toolbox
This class is an attribute that creates an editor to edit a specified file or URL given by an attribute in the container of this attribute.
FileEditorTableauFactory(NamedObj, String) - Constructor for class ptolemy.vergil.toolbox.FileEditorTableauFactory
Create a factory with the given name and container.
FileExists - Class in org.geon
 
FileExists(CompositeEntity, String) - Constructor for class org.geon.FileExists
Construct an actor with the given container and name.
fileExtensionFilter - Variable in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource
This parameter specifies a file extension that is used to limit the array of filenames returned by the data source actor when "As unCompressed File Name" is selected as the ouput type.
fileFormat - Variable in class org.sdm.spa.BrowserUI
The format of the data (used for content input).
filein - Variable in class org.sdm.spa.ProcessFileRT
Input file to work on (recordtype {name=string, data=long, size=long})
FileInfo - Class in org.kepler.io
File information structure.
FileInfo(String) - Constructor for class org.kepler.io.FileInfo
 
FileInfo(String, long, long) - Constructor for class org.kepler.io.FileInfo
 
fileInputPort - Variable in class org.kepler.actor.rest.RESTService
Input file.
fileListCopyFrom(String, String) - Method in class org.sdm.spa.actors.transport.SrmliteCopier
 
fileMD5 - Variable in class org.kepler.provenance.sql.SQLRecordingV8.TokenInfo
The file MD5 checksum.
fileName - Variable in class org.geon.BinaryFileWriter
The file name to which to write.
filename - Variable in class org.kepler.data.netcdf.NetCDFReader
The name of the NetCDF file to read.
filename - Variable in class org.kepler.data.netcdf.NetCDFWriter
The name of the NetCDF file.
filename - Variable in class org.kepler.gis.actor.io.GISWriter
The name of the output file.
filename - Variable in class org.kepler.gis.actor.kml.KMLCombineFiles
The name of the output file.
filename - Variable in class org.kepler.gis.actor.kml.KMLWriter
The name of the output file.
filename - Variable in class org.kepler.gis.actor.kml.WriteTimestampToKML
The name of the KML file to write.
filename - Variable in class org.kepler.gis.actor.windninja.ATMCombineFiles
The name of the output file.
filename - Variable in class org.nees.CreateUniqueFile
The name of the created file.
filename - Variable in class org.sdm.spa.FASTACounter
The FASTA file name.
filename - Variable in class ptolemy.actor.lib.FileWriter
The name of the file to write to.
fileName - Variable in class ptolemy.actor.lib.io.LineWriter
The file name to which to write.
FILENAME_EXTENSION - Static variable in class org.kepler.util.WorkflowRun
 
FilenameFilter_RegularPattern - Class in org.kepler.util
A FilenameFilter class for listing directories.
FilenameFilter_RegularPattern() - Constructor for class org.kepler.util.FilenameFilter_RegularPattern
 
FilenameFilter_RegularPattern(String) - Constructor for class org.kepler.util.FilenameFilter_RegularPattern
 
fileNamePar - Variable in class org.cipres.kepler.NexusFileReader
The Nexus file name is set in this parameter.
fileNameToURL(String, URL) - Method in class ptolemy.moml.MoMLParser
Given a file name or URL description, find a URL on which openStream() will work.
fileOrURL - Variable in class org.camera.service.CAMERAResourceMonitor
The file name or URL from which to read.
fileOrURL - Variable in class org.geon.BinaryFileReader
The file name or URL from which to read.
fileOrURL - Variable in class org.geon.FileToArray
The file name or URL from which to read.
fileOrURL - Variable in class org.geon.FileToString
The file name or URL from which to read.
fileOrURL - Variable in class org.geon.SVGToPolygon
The file name or URL from which to read.
fileOrURL - Variable in class ptolemy.actor.lib.image.ImageReader
The file name or URL from which to read.
fileOrURL - Variable in class ptolemy.actor.lib.image.PGMReader
The file name or URL from which to read.
fileOrURL - Variable in class ptolemy.actor.lib.io.FileReader
The file name or URL from which to read.
fileOrURL - Variable in class ptolemy.actor.lib.io.LineReader
The file name or URL from which to read.
fileOrURL - Variable in class ptolemy.actor.parameters.ParameterSet
A parameter naming the file or URL to be read that contains attribute names and values.
FileOrURLAccessor - Interface in ptolemy.kernel.attributes
An interface for Attributes and Parameters that access files or URLs.
FileOrURLEditorFactory - Class in ptolemy.actor.gui
An editor factory for an attribute that has a fileOrURL parameter.
FileOrURLEditorFactory(NamedObj, String) - Constructor for class ptolemy.actor.gui.FileOrURLEditorFactory
Construct a factory with the specified container and name.
fileOrURLParameter - Variable in class org.sdm.spa.BrowserUI
Input file or URL parameter.
fileOrURLPort - Variable in class org.camera.service.CAMERAResourceMonitor
An input port for optionally providing a file name.
fileOrURLPort - Variable in class org.geon.BinaryFileReader
An input for optionally providing a file name.
fileOrURLPort - Variable in class org.sdm.spa.BrowserUI
Input file or URL parameter.
fileOrURLPort - Variable in class ptolemy.actor.lib.io.FileReader
An input port for optionally providing a file name.
fileout - Variable in class org.sdm.spa.ProcessFileRT
Output file as result (recordtype {name=string, data=long, size=long})
fileParameter - Variable in class org.camera.service.FastaValidation
The file's full path.
FileParameter - Class in ptolemy.data.expr
This is an attribute that specifies a file or URL.
FileParameter(NamedObj, String) - Constructor for class ptolemy.data.expr.FileParameter
Construct an attribute with the given name contained by the specified container.
FileParameter(NamedObj, String, boolean) - Constructor for class ptolemy.data.expr.FileParameter
Construct an attribute with the given name contained by the specified container.
filePath - Variable in class org.geon.BinaryFileWriter
output the file URL for display purposes.
filePath - Variable in class org.geon.FileExists
File path.
filePath - Variable in class org.ROADnet.OrbLogger
 
FilePathInputFormat - Class in org.kepler.hadoop.io.input
This class provides InputFormat to read file paths.
FilePathInputFormat() - Constructor for class org.kepler.hadoop.io.input.FilePathInputFormat
 
filePathInputParameter - Variable in class org.kepler.actor.io.FileDeleter
The file or directory path which will be deleted.
filePathParam - Variable in class org.geon.FileExists
File path name or URL.
FilePathRecordReader - Class in org.kepler.hadoop.io.input
This class provides RecordReader to read file paths.
FilePathRecordReader() - Constructor for class org.kepler.hadoop.io.input.FilePathRecordReader
 
filePaths - Variable in class org.srb.SRBQueryMD
Matching files paths.
FilePortParameter - Class in ptolemy.actor.parameters
This file parameter creates an associated port that can be used to update the current value of the parameter.
FilePortParameter(NamedObj, String) - Constructor for class ptolemy.actor.parameters.FilePortParameter
Construct a parameter with the given name contained by the specified entity.
FilePortParameter(NamedObj, String, Token) - Constructor for class ptolemy.actor.parameters.FilePortParameter
Construct a Parameter with the given container, name, and Token.
FileReader - Class in ptolemy.actor.lib.io
This actor reads a file or URL and outputs the entire file as a single string.
FileReader(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.io.FileReader
Construct an actor with a name and a container.
FileRemover - Class in org.kepler.actor.ssh
Connects to a remote host using Ssh protocol (or does nothing for the local host) and deletes files/directories matching a given mask.
FileRemover(CompositeEntity, String) - Constructor for class org.kepler.actor.ssh.FileRemover
Construct an FileRemover actor with the given container and name.
files() - Method in class org.kepler.cloudsharing.util.WorkflowResults
Get the set of files.
files - Variable in class org.resurgence.actor.FileArrayPrinter
The output port, which is an array with the file paths and names.
FILESEP - Static variable in class org.camera.service.ServiceUtils
 
FILESEP - Static variable in class org.kepler.actor.rest.ServiceUtils
 
filesToGet - Variable in class org.srb.SGet
Paths to the SRB files to fetch
filesToPut - Variable in class org.srb.SPut
Paths to the files to upload
FileSystemClient - Class in org.kepler.cloudsharing.fs
A client to upload workflow results to Dropbox.
FileSystemClient() - Constructor for class org.kepler.cloudsharing.fs.FileSystemClient
 
FileToArray - Class in org.geon
This actor reads a file or URL and outputs an array of the evaluations of all lines read.
FileToArray(CompositeEntity, String) - Constructor for class org.geon.FileToArray
Construct an actor with the given container and name.
FileToString - Class in org.geon
This actor reads a file or URL and outputs its content in a single string.
FileToString(CompositeEntity, String) - Constructor for class org.geon.FileToString
Construct an actor with the given container and name.
fileToWrite - Variable in class org.resurgence.actor.TextFileWriter
The second input port, which contains the file path and name to which to write.
fileType - Variable in class org.kepler.objectmanager.cache.DataCachePutActor
 
FileUtil - Class in org.kepler.util
A place to keep some useful file processing static utility methods.
FileUtil() - Constructor for class org.kepler.util.FileUtil
 
FileUtilities - Class in ptolemy.util
A collection of utilities for manipulating files These utilities do not depend on any other ptolemy.* packages.
FileUtilities.StreamAndURL - Class in ptolemy.util
A class that contains an InputStream and a URL so that we don't have to follow redirects twice.
FileWrite - Class in org.geon
This actor extends LineWriter by outputing the filename.
FileWrite(CompositeEntity, String) - Constructor for class org.geon.FileWrite
Construct an actor with the given container and name.
FileWriter - Class in ptolemy.actor.lib
This actor reads tokens from any number of input channels and writes their string values to the specified output file.
FileWriter(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.FileWriter
Construct an actor with the given container and name.
fileWritten - Variable in class org.resurgence.actor.TextFileWriter
The output port, which contains the name and path of the written file.
FILL - Static variable in class com.jgoodies.forms.layout.CellConstraints
Fill the cell either horizontally or vertically.
FILL - Static variable in class com.jgoodies.forms.layout.ColumnSpec
By default fill the component into the column.
FILL - Static variable in class com.jgoodies.forms.layout.RowSpec
By default fill the component into the row.
FILL - Static variable in class org.mlc.swing.layout.LayoutConstraintsManager
 
fillArc(int, int, int, int, int, int) - Method in class ptolemy.plot.EPSGraphics
 
FillBuff() - Method in class ptolemy.data.expr.SimpleCharStream
 
FillBuff() - Method in class ptolemy.moml.unit.SimpleCharStream
 
fillColor - Variable in class ptolemy.vergil.kernel.attributes.FilledShapeAttribute
The line color.
FilledShapeAttribute - Class in ptolemy.vergil.kernel.attributes
This is an abstract attribute that is rendered as a filled shape.
FilledShapeAttribute(NamedObj, String) - Constructor for class ptolemy.vergil.kernel.attributes.FilledShapeAttribute
Construct an attribute with the given name contained by the specified container.
fillFieldCombobox(int) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIBase
Fill the fields combobox with any field names for that table that have not been used.
fillFieldCombobox(DSSchemaIFace, String, JComboBox, boolean) - Static method in class org.ecoinformatics.seek.querybuilder.DBUIUtils
Helper method to fill combobox with the list of field names from a "named" table schema
fillGaps(Vector<Object>) - Method in class org.kepler.data.datasource.dataturbine.DataTurbine
 
fillHashWithTableNamesForWhere(DBWhereIFace, Hashtable) - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneAdvanced
Fill the hastable with the table names
fillHashWithTableNamesForWhere(DBWhereIFace, Hashtable) - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneIntermediate
Fill the hastable with the table names
fillOnWrapup - Variable in class ptolemy.actor.lib.gui.PlotterBase
If true, fill the plot when wrapup is called.
fillOval(int, int, int, int) - Method in class ptolemy.plot.EPSGraphics
Fill an oval bounded by the specified rectangle with the current color.
fillPlot() - Method in class ptolemy.plot.Histogram
Rescale so that the data that is currently plotted just fits.
fillPlot() - Method in class ptolemy.plot.Plot
Rescale so that the data that is currently plotted just fits.
fillPlot() - Method in class ptolemy.plot.PlotBox
Rescale so that the data that is currently plotted just fits.
fillPlot() - Method in interface ptolemy.plot.PlotBoxInterface
Rescale so that the data that is currently plotted just fits.
fillPlot() - Method in interface ptolemy.plot.PlotInterface
Rescale so that the data that is currently plotted just fits.
fillPolygon(int[], int[], int) - Method in class ptolemy.plot.EPSGraphics
Draw a filled polygon defined by arrays of x and y coordinates.
fillPolygons - Variable in class org.kepler.gis.actor.kml.KMLWriter
If true, polygons are filled.
fillQueryDef(DBQueryDef) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelAdv
Fills QueryDef from Model with "select" items.
fillQueryDef(DBQueryDef) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableOverviewModel
Fills QueryDef from Model
fillQueryDef(DBQueryDef) - Method in class org.ecoinformatics.seek.querybuilder.DBWhereModel
Fills QueryDef from Model
fillQueryDef(DBQueryDef) - Method in class org.ecoinformatics.seek.querybuilder.DBWherePanel
Fills QueryDef from Model
fillQueryDef(DBQueryDef) - Method in class org.ecoinformatics.seek.querybuilder.QBApp
Fills QueryDef from Model
fillQueryDef(DBQueryDef) - Method in interface org.ecoinformatics.seek.querybuilder.QBBuilderInterface
Fill the QueryDef from the Model
fillQueryDef(DBQueryDef) - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneAdvanced
Fill the QueryDef from the Model
fillQueryDef(DBQueryDef) - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneIntermediate
Fill the QueryDef from the Model
fillQueryDef(DBQueryDef) - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
Fills QueryDef from Model
fillRect(int, int, int, int) - Method in class ptolemy.plot.EPSGraphics
Fill the specified rectangle and draw a thin outline around it.
fillRoundRect(int, int, int, int, int, int) - Method in class ptolemy.plot.EPSGraphics
 
fillTableCombobox(int) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIBase
Fill the table combobox, note that if all the fields have been already used the table won't show in the list unless they are editting a row containing that table name
fillTableCombobox(DSSchemaIFace, JComboBox) - Static method in class org.ecoinformatics.seek.querybuilder.DBUIUtils
Helper method to fill combobox with the list of table names from the schema
filter - Variable in class org.resurgence.actor.FileArrayPrinter
The parameter, which is a string with the file extension filter.
filter(FunctionToken, ArrayToken) - Static method in class ptolemy.data.expr.UtilityFunctions
Extract a sub-array consisting of all of the elements of an array for which the given predicate function returns true.
filter(FunctionToken, ArrayToken, IntToken) - Static method in class ptolemy.data.expr.UtilityFunctions
Extract a sub-array consisting of all of the elements of an array for which the given predicate function returns true.
filterAttributeValue(NamedObj, String, String, String, String) - Method in class org.kepler.moml.filter.TopProvenanceRecorderFilter
In this class, do nothing.
filterAttributeValue(NamedObj, String, String, String, String) - Method in class org.kepler.moml.filter.TopReportingListenerFilter
In this class, do nothing.
filterAttributeValue(NamedObj, String, String, String, String) - Method in class ptolemy.moml.filter.AddEditorFactory
Deprecated.
Identify Parameters that need a VisibleParameterEditorFactory named _editorFactory added.
filterAttributeValue(NamedObj, String, String, String, String) - Method in class ptolemy.moml.filter.AddIcon
If the attributeName is "class" and attributeValue names a class that has had its port names changed between releases, then substitute in the new port names.
filterAttributeValue(NamedObj, String, String, String, String) - Method in class ptolemy.moml.filter.AddMissingParameter
Identify classes that need to have parameter added.
filterAttributeValue(NamedObj, String, String, String, String) - Method in class ptolemy.moml.filter.ChangeFixedWidth1ToAuto
This method doesn't do anything.
filterAttributeValue(NamedObj, String, String, String, String) - Method in class ptolemy.moml.filter.ClassChanges
If the attributeName is "class" and attributeValue names a class that needs to be renamed, then substitute in the new class name.
filterAttributeValue(NamedObj, String, String, String, String) - Method in class ptolemy.moml.filter.DocAttributeChanges
Change StringParameter attributes insinde DocAttribute to StringAttribute.
filterAttributeValue(NamedObj, String, String, String, String) - Method in class ptolemy.moml.filter.GRColorChanges
Handle parameter name changes.
filterAttributeValue(NamedObj, String, String, String, String) - Method in class ptolemy.moml.filter.HideAnnotationNames
Hide annotation names.
filterAttributeValue(NamedObj, String, String, String, String) - Method in class ptolemy.moml.filter.JavaScriptThisUpdate
Handle parameter name changes.
filterAttributeValue(NamedObj, String, String, String, String) - Method in class ptolemy.moml.filter.LazyTypedCompositeActorChanges
Possibly replaced TypedCompositeActors with LazyTypedCompositeActors.
filterAttributeValue(NamedObj, String, String, String, String, MoMLParser) - Method in class ptolemy.moml.filter.MoMLFilterSimple
Return the old attribute value for properties that are not registered to be removed.
filterAttributeValue(NamedObj, String, String, String, String) - Method in class ptolemy.moml.filter.MultiportToSinglePort
If the attributeName is "class" and attributeValue names a class that has had its port names changed between releases, then substitute in the new port names.
filterAttributeValue(NamedObj, String, String, String, String) - Method in class ptolemy.moml.filter.NamedObjClassesSeen
If the attributeName is "class" and the attributeValue extends NamedObj, then add the attributeValue to the set of classes we are interested in.
filterAttributeValue(NamedObj, String, String, String, String) - Method in class ptolemy.moml.filter.ParameterNameChanges
If the attributeName is "class" and attributeValue names a class that has had a Parameter names changed between releases, then substitute in the new Parameter names.
filterAttributeValue(NamedObj, String, String, String, String) - Method in class ptolemy.moml.filter.PortClassChanges
If the attributeName is "class" and attributeValue names a class that has had its port classes changed between releases, then substitute in the new port classes.
filterAttributeValue(NamedObj, String, String, String, String) - Method in class ptolemy.moml.filter.PortNameChanges
If the attributeName is "class" and attributeValue names a class that has had its port names changed between releases, then substitute in the new port names.
filterAttributeValue(NamedObj, String, String, String, String) - Method in class ptolemy.moml.filter.PropertyClassChanges
Return new class names for properties that have been registered as having changed classes.
filterAttributeValue(NamedObj, String, String, String, String) - Method in class ptolemy.moml.filter.RelationWidthChanges
Filter relations widths and change 0 to -1.
filterAttributeValue(NamedObj, String, String, String, String) - Method in class ptolemy.moml.filter.RemoveClasses
Filter for graphical classes and return new values if a graphical class is found.
filterAttributeValue(NamedObj, String, String, String, String) - Method in class ptolemy.moml.filter.RemoveGraphicalClasses
Filter for graphical classes and return new values if a graphical class is found.
filterAttributeValue(NamedObj, String, String, String, String) - Method in class ptolemy.moml.filter.RemoveNonPtinyClasses
Filter for graphical classes and return new values if a graphical class is found.
filterAttributeValue(NamedObj, String, String, String, String) - Method in class ptolemy.moml.filter.RemoveProperties
Return the old attribute value for properties that are not registered to be removed.
filterAttributeValue(NamedObj, String, String, String, String) - Method in interface ptolemy.moml.MoMLFilter
Given a container, attribute name and attribute value, return a new attribute value.
filterAttributeValue(NamedObj, String, String, String, String, MoMLParser) - Method in interface ptolemy.moml.MoMLFilter
Given a container, attribute name and attribute value, return a new attribute value.
filterAttributeValue(NamedObj, String, String, String, String) - Method in class ptolemy.vergil.kernel.attributes.UpdateAnnotations
Update annotations by removing old annotations and replacing them with new annotation.
filterDeletedObjects(AbstractBasicGraphModel, Object[]) - Static method in class ptolemy.vergil.basic.BasicGraphFrameExtension
Filter the array of objects selected for deletion.
filterDeleteMoml(AbstractBasicGraphModel, Object[], StringBuffer) - Static method in class ptolemy.vergil.basic.BasicGraphFrameExtension
Filter the moml to be deleted.
FilteredVisibleTreeModel - Class in org.kepler.gui
Created by IntelliJ IDEA.
FilteredVisibleTreeModel(TreeModel, File) - Constructor for class org.kepler.gui.FilteredVisibleTreeModel
 
filterEndElement(NamedObj, String, StringBuffer, String) - Method in class org.kepler.moml.filter.TopProvenanceRecorderFilter
Add provenance recorder to top level container.
filterEndElement(NamedObj, String, StringBuffer, String) - Method in class org.kepler.moml.filter.TopReportingListenerFilter
Add reporting listener to the top level container.
filterEndElement(NamedObj, String, StringBuffer, String) - Method in class ptolemy.moml.filter.AddEditorFactory
filterEndElement(NamedObj, String, StringBuffer, String, MoMLParser) - Method in class ptolemy.moml.filter.AddEditorFactory
Deprecated.
Make modifications to the specified container, which is defined in a MoML element with the specified name.
filterEndElement(NamedObj, String, StringBuffer, String) - Method in class ptolemy.moml.filter.AddIcon
filterEndElement(NamedObj, String, StringBuffer, String, MoMLParser) - Method in class ptolemy.moml.filter.AddIcon
Make modifications to the specified container, which is defined in a MoML element with the specified name.
filterEndElement(NamedObj, String, StringBuffer, String) - Method in class ptolemy.moml.filter.AddMissingParameter
filterEndElement(NamedObj, String, StringBuffer, String, MoMLParser) - Method in class ptolemy.moml.filter.AddMissingParameter
Make modifications to the specified container, which is defined in a MoML element with the specified name.
filterEndElement(NamedObj, String, StringBuffer, String) - Method in class ptolemy.moml.filter.ChangeFixedWidth1ToAuto
Filter relations widths and change 1 to "Auto" and make sure still value is not not stored (if not changed).
filterEndElement(NamedObj, String, StringBuffer, String) - Method in class ptolemy.moml.filter.ClassChanges
In this class, do nothing.
filterEndElement(NamedObj, String, StringBuffer, String) - Method in class ptolemy.moml.filter.DocAttributeChanges
In this class, do nothing.
filterEndElement(NamedObj, String, StringBuffer, String) - Method in class ptolemy.moml.filter.GRColorChanges
If the container is a property named "diffuseColor" contained by one of the GR actors, then check the format of its parameter to change it, if necessary, from matrix format to array format.
filterEndElement(NamedObj, String, StringBuffer, String) - Method in class ptolemy.moml.filter.HideAnnotationNames
Make modifications to the specified container, which is defined in a MoML element with the specified name.
filterEndElement(NamedObj, String, StringBuffer, String) - Method in class ptolemy.moml.filter.JavaScriptThisUpdate
If the container is a property named "script" contained by the JavaScript actor, then add "this." to certain function calls.
filterEndElement(NamedObj, String, StringBuffer, String) - Method in class ptolemy.moml.filter.LazyTypedCompositeActorChanges
In this class, do nothing.
filterEndElement(NamedObj, String, StringBuffer, String, MoMLParser) - Method in class ptolemy.moml.filter.MoMLFilterSimple
Reset private variables.
filterEndElement(NamedObj, String, StringBuffer, String) - Method in class ptolemy.moml.filter.MultiportToSinglePort
In this class, do nothing.
filterEndElement(NamedObj, String, StringBuffer, String) - Method in class ptolemy.moml.filter.NamedObjClassesSeen
In this class, do nothing.
filterEndElement(NamedObj, String, StringBuffer, String) - Method in class ptolemy.moml.filter.ParameterNameChanges
In this class, do nothing.
filterEndElement(NamedObj, String, StringBuffer, String) - Method in class ptolemy.moml.filter.PortClassChanges
Reset private variables.
filterEndElement(NamedObj, String, StringBuffer, String) - Method in class ptolemy.moml.filter.PortNameChanges
Clear recorded state for this element so that it does not interfere with the next element.
filterEndElement(NamedObj, String, StringBuffer, String) - Method in class ptolemy.moml.filter.PropertyClassChanges
Reset private variables.
filterEndElement(NamedObj, String, StringBuffer, String) - Method in class ptolemy.moml.filter.RelationWidthChanges
Make modifications to the specified container, which is defined in a MoML element with the specified name.
filterEndElement(NamedObj, String, StringBuffer, String) - Method in class ptolemy.moml.filter.RemoveClasses
In this class, do nothing.
filterEndElement(NamedObj, String, StringBuffer, String) - Method in class ptolemy.moml.filter.RemoveGraphicalClasses
In this class, do nothing.
filterEndElement(NamedObj, String, StringBuffer, String) - Method in class ptolemy.moml.filter.RemoveNonPtinyClasses
In this class, do nothing.
filterEndElement(NamedObj, String, StringBuffer, String) - Method in class ptolemy.moml.filter.RemoveProperties
Reset private variables.
filterEndElement(NamedObj, String, StringBuffer, String) - Method in interface ptolemy.moml.MoMLFilter
Make modifications to the specified container, which is defined in a MoML element with the specified name.
filterEndElement(NamedObj, String, StringBuffer, String, MoMLParser) - Method in interface ptolemy.moml.MoMLFilter
Make modifications to the specified container, which is defined in a MoML element with the specified name.
filterEndElement(NamedObj, String, StringBuffer, String) - Method in class ptolemy.vergil.kernel.attributes.UpdateAnnotations
Make modifications to the specified container, which is defined in a MoML element with the specified name.
filterQueryServicesList(Vector) - Static method in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
Filters out the non-query services given a list of EcoGridServices
filterReturnType(Type, Type) - Static method in class ptolemy.data.expr.UtilityFunctions
Return the return type of the filter method, given the types of the argument.
filterReturnType(Type, Type, Type) - Static method in class ptolemy.data.expr.UtilityFunctions
Return the return type of the filter method, given the types of the argument.
filterRuns(String, String, String, String, String, String) - Method in class org.kepler.workflowrunmanager.gui.WorkflowRunManagerTableModel
Filter entire list of workflow runs (kept in workflowRunManager) so that we may display only those runs that pass the filter.
filterRuns(String, String, String, String, String, String) - Method in class org.kepler.workflowrunmanager.WorkflowRunManager
Return ArrayList of WorkflowRuns that match given filters.
FilterUI - Class in org.geon
This actor displays its input on a browser window and allows the user to select and forward the desired selections to the output The input is accepted as an array of strings.
FilterUI(CompositeEntity, String) - Constructor for class org.geon.FilterUI
Construct an actor with the given container and name.
finalize() - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIBase
 
finalize() - Method in class org.ecoinformatics.seek.querybuilder.DBTableDesktopPane
Finalize/Cleanup
finalize() - Method in class org.ecoinformatics.seek.querybuilder.DBTableFrame
Finalize/Cleanup
finalize() - Method in class org.ecoinformatics.seek.querybuilder.DBWhereOperator
 
finalStateNames - Variable in class ptolemy.domains.modal.kernel.FSMActor
Attribute specifying the names of the final states of this actor.
find(ArrayToken) - Static method in class ptolemy.data.expr.UtilityFunctions
Find all true-valued elements in an array of boolean values, returning an array containing the indices (in ascending order) of all occurrences of the value 'true'.
find(ArrayToken, Token) - Static method in class ptolemy.data.expr.UtilityFunctions
Find all elements in an array that match the specified token and return an array containing their indices (in ascending order).
FindAction() - Constructor for class ptolemy.vergil.basic.BasicGraphFrame.FindAction
Create a new action to search for text.
findAttrValue(Node, String) - Static method in class org.ecoinformatics.seek.querybuilder.DBUIUtils
------------------------------------------------------------ Gets an attribute value for the node.
findAttrValueForNode(Node, String, String) - Static method in class org.ecoinformatics.seek.querybuilder.DBUIUtils
------------------------------------------------------------ Gets an attribute value for the named node.
FindCoveringFile - Class in org.kepler.gis.actor.bbox
Find a GIS file in a directory whose bounding box contains the input GIS data set.
FindCoveringFile(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.bbox.FindCoveringFile
 
findEffigy(NamedObj) - Static method in class ptolemy.actor.gui.Configuration
Find an effigy for the specified model by searching all the configurations that have been created.
findFile(String) - Static method in class org.kepler.webview.server.WebViewServer
Search for a file.
findFile(String) - Static method in class ptolemy.data.expr.UtilityFunctions
Find a file or directory.
findKar(File) - Method in class org.kepler.objectmanager.library.LibIndex
 
findMaximum() - Method in class ptolemy.math.Precision
Return the maximum obtainable value in this precision.
findMethod(String, Type[], int) - Static method in class ptolemy.data.expr.CachedMethod
Find a method or function with the specified name and argument types.
findMinimum() - Method in class ptolemy.math.Precision
Return the minimum obtainable value for this precision.
FindMissingActors - Class in org.kepler.loader.util
A class to that finds source files whose classes are not in the actor tree.
FindMissingActors() - Constructor for class org.kepler.loader.util.FindMissingActors
 
findModuleSrcDirForNameObj(NamedObj) - Static method in class org.kepler.loader.util.UpdateActorTreeFiles
Find the module whose source directory contains a NamedObj.
findNamedObjects(Set<NamedOntClass>) - Static method in class org.kepler.tagging.Tagging
Search for and return named objects with one or more of the given types TODO: extend to support subclass checking
findNamedObjects(NamedOntClass) - Static method in class org.kepler.tagging.Tagging
Search for and return named objects with the given type TODO: extend to support subclass checking
findNode(Node, String) - Static method in class org.ecoinformatics.seek.querybuilder.DBUIUtils
------------------------------------------------------------ Finds the first node of a given type
findNodeValue(Node, String) - Static method in class org.ecoinformatics.seek.querybuilder.DBUIUtils
------------------------------------------------------------ Gets the value of the named node
FindPackages - Class in ptolemy.vergil.actor
Look for class files under a directory and return package names.
FindPackages() - Constructor for class ptolemy.vergil.actor.FindPackages
 
findPackages(File, ExecuteCommands) - Static method in class ptolemy.vergil.actor.FindPackages
Look for class files under a directory and return package names.
findProperties(String, String, boolean) - Method in class org.kepler.configuration.ConfigurationProperty
returns a list of properties within this property that have a specific name and value.
findProperties(String, String) - Method in class org.kepler.configuration.ConfigurationProperty
returns a list of properties within this property that have a specific name and value.
findProperties(List<ConfigurationProperty>, String, String, boolean) - Static method in class org.kepler.configuration.ConfigurationProperty
Search a list of properties for properties that contain a name and a value
findProperties(ConfigurationProperty, String, String, boolean) - Static method in class org.kepler.configuration.ConfigurationProperty
return a list of properties that have a name that matches name and a value that matches value within property.
findToplevelEffigy(NamedObj) - Static method in class ptolemy.actor.gui.Effigy
Find the effigy associated with the top level of the object, and if not found but the top level has a ContainmentExtender attribute, use that attribute to find the containment extender of the top level and continue the search.
findTreeItem(CompositeEntity, int) - Method in class org.kepler.objectmanager.library.LibraryManager
Look only at the children of the given parent to match the given LIID.
findTreeItem(int) - Method in class org.kepler.objectmanager.library.LibraryManager
Look in the entire tree and return the ComponentEntity that matches the given LIID.
findTreeItemDeep(CompositeEntity, int) - Method in class org.kepler.objectmanager.library.LibraryManager
Recurse all children under parent to match the given LIID.
findXML(File) - Method in class org.kepler.objectmanager.library.LibIndex
 
finish() - Method in class org.kepler.ddp.actor.pattern.stub.CoGroupInput
Stop execution of the workflow the next time postfire() is called.
finish() - Method in class org.kepler.ddp.actor.pattern.stub.CrossInput
Stop execution of the workflow the next time postfire() is called.
finish() - Method in class org.kepler.ddp.actor.pattern.stub.MapInput
Stop execution of the workflow the next time postfire() is called.
finish() - Method in class org.kepler.ddp.actor.pattern.stub.MatchInput
Stop execution of the workflow the next time postfire() is called.
finish() - Method in class org.kepler.ddp.actor.pattern.stub.ReduceInput
Stop execution of the workflow the next time postfire() is called.
finish() - Method in class org.kepler.ddp.actor.pattern.stub.StubSourceActor
Stop execution of the workflow the next time postfire() is called.
finish - Variable in class org.sdm.spa.ArchiveCounter
Finish flag for counting.
finish() - Method in class ptolemy.actor.Director
Request that after the current iteration finishes postfire() returns false, indicating to the environment that no more iterations should be invoked.
finish() - Method in class ptolemy.actor.Manager
If the state is not IDLE, set a flag to request that execution stop and exit in a completely deterministic fashion at the end of the next toplevel iteration.
finish() - Method in class ptolemy.actor.process.ProcessDirector
Request that the current iteration finishes and postfire() returns false, indicating to the environment that no more iterations should be invoked.
finish() - Method in class ptolemy.kernel.util.test.system.ChangeRequestTest
Finish a run.
finish() - Method in class ptolemy.kernel.util.test.system.TestDE
Finish a run.
finishConstruction(TableauFrame) - Method in class org.kepler.tagging.gui.TagBarInsertionUI
 
finishConstruction(KeplerGraphFrame) - Method in class org.kepler.tagging.gui.TagBarUI
 
FINISHED_ABRUPTLY - Static variable in class ptolemy.domains.pn.kernel.event.PNProcessEvent
A process finished abruptly.
FINISHED_PROPERLY - Static variable in class ptolemy.domains.pn.kernel.event.PNProcessEvent
A process finished properly.
FINISHED_WITH_EXCEPTION - Static variable in class ptolemy.domains.pn.kernel.event.PNProcessEvent
A process finished with an exception.
FIR - Class in ptolemy.domains.sdf.lib
This actor implements a type polymorphic finite-impulse response filter with multirate capability.
FIR(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.FIR
Construct an actor with the given container and name.
fire() - Method in class com.numericsolutions.geomodeltools.DensityGridActor
 
fire() - Method in class org.camera.service.AverageGenomeSizeParserV2
 
fire() - Method in class org.camera.service.CAMERAResourceMonitor
Output the data read from the file or URL as a string.
fire() - Method in class org.camera.service.CAMERARESTService
 
fire() - Method in class org.camera.service.CAMERAURLProcessor
 
fire() - Method in class org.camera.service.FastaValidation
Output the data read from the file or URL as a string.
fire() - Method in class org.camera.service.Fastq2Fasta
 
fire() - Method in class org.camera.service.IdSizeMapForSeqFile
 
fire() - Method in class org.cipres.kepler.AlignmentEditor_Seaview
Run seaview for alignment reviw and manipulation.
fire() - Method in class org.cipres.kepler.ClustalWSeqAlign
Run ClustalW for Sequence Alignment.
fire() - Method in class org.cipres.kepler.GUIRunCIPRes
Invoke the external program by setting the parameters of the execution using GUIGen.
fire() - Method in class org.cipres.kepler.Initializer
Send out a token to indicate that the intialization is successful.
fire() - Method in class org.cipres.kepler.JRunCIPRes
Invoke the external program.
fire() - Method in class org.cipres.kepler.MatrixAligner
Improve the tree using RecIDCM3 CORBA service, and send the result tree to the output port.
fire() - Method in class org.cipres.kepler.NexusFileReader
Send the content of the Nexus file to the output.
fire() - Method in class org.cipres.kepler.PAUPConsensusTrees
Run PAUP for finding consensus trees.
fire() - Method in class org.cipres.kepler.PAUPInfer
Run PAUP for tree inference.
fire() - Method in class org.cipres.kepler.PhyloDataReader
Read and parse the Nexus data.
fire() - Method in class org.cipres.kepler.RecIDCM3
Improve the tree using RecIDCM3 CORBA service, and send the result tree to the output port.
fire() - Method in class org.cipres.kepler.SubsetChooserActor
Choose a subset from the displayed objects.
fire() - Method in class org.cipres.kepler.TreeDecomposer
Decompose the input tree and send the subtrees to the output port.
fire() - Method in class org.cipres.kepler.TreeImprover
Improve a tree and send the final tree to the output port.
fire() - Method in class org.cipres.kepler.TreeMerger
Merge a set of trees and send the whole tree to the output port.
fire() - Method in class org.cipres.kepler.TreeParser
Parse the tree and send various sub data structure into corresponding ports.
fire() - Method in class org.cipres.kepler.TreeToString
Send the single string description of a tree to the output port.
fire() - Method in class org.cipres.kepler.TreeVizForester
Display the phylogenetic tree ported in from the input port with the Forester package.
fire() - Method in class org.dart.matlab.MatlabExpression
 
fire() - Method in class org.ecoinformatics.seek.backprop.BackProp
 
fire() - Method in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreDataSource
Send a record's tokens over the ports on each fire event.
fire() - Method in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource
Send a record's tokens over the ports on each fire event.
fire() - Method in class org.ecoinformatics.seek.ecogrid.EcogridWriter
Output the data lines into an array.
fire() - Method in class org.ecoinformatics.seek.garp.GarpAlgorithm
 
fire() - Method in class org.ecoinformatics.seek.garp.GarpPrediction
 
fire() - Method in class org.ecoinformatics.seek.garp.GarpPresampleLayers
 
fire() - Method in class org.ecoinformatics.seek.gis.gdal.GDALTranslateActor
Fire
fire() - Method in class org.ecoinformatics.seek.gis.gdal.GDALWarpActor
Fire
fire() - Method in class org.ecoinformatics.seek.gis.grass.GISBufferActor
 
fire() - Method in class org.ecoinformatics.seek.gis.grass.GISHullActor
 
fire() - Method in class org.ecoinformatics.seek.gis.grass.GISRasterActor
 
fire() - Method in class org.ecoinformatics.seek.gis.grass.GrassExportActor
 
fire() - Method in class org.ecoinformatics.seek.gis.grass.GrassImportActor
 
fire() - Method in class org.ecoinformatics.seek.gis.java_gis.AddGrids
 
fire() - Method in class org.ecoinformatics.seek.gis.java_gis.AscGridValue
 
fire() - Method in class org.ecoinformatics.seek.gis.java_gis.CVHull2Raster
 
fire() - Method in class org.ecoinformatics.seek.gis.java_gis.GARPSummary
 
fire() - Method in class org.ecoinformatics.seek.gis.java_gis.GISHullActorJ
 
fire() - Method in class org.ecoinformatics.seek.gis.java_gis.GridRescaler
Creates rescaled ascii grid for each input grid using the input parameters Uses the 'Grid' class that is disk-based, thus allowing very large grids.
fire() - Method in class org.ecoinformatics.seek.gis.java_gis.GridReset
 
fire() - Method in class org.ecoinformatics.seek.gis.java_gis.MergeGrids
 
fire() - Method in class org.ecoinformatics.seek.R.RExpression
 
fire() - Method in class org.ecoinformatics.seek.R.RExpression2
 
fire() - Method in class org.ecoinformatics.seek.taxon.GetTaxa
 
fire() - Method in class org.ecoinformatics.seek.util.FieldChooser
Send a random number with a uniform distribution to the output.
fire() - Method in class org.ecoinformatics.seek.util.SequenceToTrigger
Consume the inputs and produce the output ArrayToken.
fire() - Method in class org.eol.WmsdActor
Send a random number with a uniform distribution to the output.
fire() - Method in class org.geon.AddPointToSVG
Translate the point into the svg ratio parameters and add it to the file.
fire() - Method in class org.geon.BinaryFileReader
Output the data read initially in the prefire() than in each invocation of postfire(), if there is any.
fire() - Method in class org.geon.BrowserDisplay
Display the input file or URL if it is other than null.
fire() - Method in class org.geon.CloseDBConnection
Closes the input database connection when triggered.
fire() - Method in class org.geon.DatabaseAccessor
If connection is closed, open a new one.
fire() - Method in class org.geon.DatabaseQuery
Consume a query and a database connection reference.
fire() - Method in class org.geon.Diagrams
Receive diagrams information and a reference to the current diagram.
fire() - Method in class org.geon.DiagramTransitions
Provide the diagrams and transitions between them along with a refernce to first diagram.
fire() - Method in class org.geon.Duplicator
broadcast the input token numCopies times.
fire() - Method in class org.geon.FileCopy
Copy the source file to the destination file.
fire() - Method in class org.geon.FileExists
Verify whether the file exists.
fire() - Method in class org.geon.FileToArray
Output the data lines into an array.
fire() - Method in class org.geon.FileToString
Output the data lines into a string.
fire() - Method in class org.geon.FilterUI
Output the selected input data.
fire() - Method in class org.geon.FTPClient
Output the data lines into an array.
fire() - Method in class org.geon.Get2DPoint
Accepts coordinates expressions and an xml composition string.
fire() - Method in class org.geon.GetPoint
Retrieve the mineral composition for the coordinate names and calculate the classification point.
fire() - Method in class org.geon.GridOverlay
 
fire() - Method in class org.geon.Interpolate
 
fire() - Method in class org.geon.NextDiagram
 
fire() - Method in class org.geon.OpenDBConnection
Connect to a database outputs a reference to the DB connection.
fire() - Method in class org.geon.PointinPolygon
Receive a set of polygons and a classification point and returns the point region along with a URL for browser display of the point in the polygon.
fire() - Method in class org.geon.PointinPolygonXY
Receive a set of polygons and a classification point and returns the point region along with a URL for browser display of the point in the polygon.
fire() - Method in class org.geon.Scp
Send the token in the value parameter to the output.
fire() - Method in class org.geon.StringToPolygon
Output the data lines into an array.
fire() - Method in class org.geon.SVGConcat
Translate the point into the svg ratio parameters and add it to the file.
fire() - Method in class org.geon.SVGToPolygon
Output the SVG file into a Polygons and their region names.
fire() - Method in class org.geon.TokenToSeparateChannels
Read the input token, and transmits it each time to a different consecutive channel.
fire() - Method in class org.geon.TokenToString
Set postfire to false.
fire() - Method in class org.geon.TransitiveClosureDBQuery
Consumes a query and a database connection reference.
fire() - Method in class org.geon.URLExists
Consume a URL and verifies its existence.
fire() - Method in class org.geon.XMLToADN
Consume an XML string representing name value pairs and converts it to an ADN schema.
fire() - Method in class org.kepler.actor.ArrayFilter
Filter elements in the input array.
fire() - Method in class org.kepler.actor.database.DatabaseTableCreator
If connection is closed, open a new one.
fire() - Method in class org.kepler.actor.DecimalFormatConverter
output the number according to designed format.
fire() - Method in class org.kepler.actor.gsissh.ExecGsisshCmd
Send the token in the value parameter to the output.
fire() - Method in class org.kepler.actor.io.FileDeleter
Delete the given file or directory and send out the status of the deleting.
fire() - Method in class org.kepler.actor.io.ParameterSetter
fire
fire() - Method in class org.kepler.actor.io.SshDirectoryList
fire
fire() - Method in class org.kepler.actor.io.SshDirectoryList_v1_1
fire
fire() - Method in class org.kepler.actor.job.GenericJobLauncher
fire
fire() - Method in class org.kepler.actor.job.GenericJobReconnect
fire
fire() - Method in class org.kepler.actor.job.JobCreator
fire
fire() - Method in class org.kepler.actor.job.JobFileFetcher
fire
fire() - Method in class org.kepler.actor.job.JobGetDirectory
fire
fire() - Method in class org.kepler.actor.job.JobGetRealJobID
fire
fire() - Method in class org.kepler.actor.job.JobManager
fire
fire() - Method in class org.kepler.actor.job.JobRemover
fire
fire() - Method in class org.kepler.actor.job.JobStatus
fire
fire() - Method in class org.kepler.actor.job.JobSubmitter
fire
fire() - Method in class org.kepler.actor.Logger
fire
fire() - Method in class org.kepler.actor.MappedLogger
fire
fire() - Method in class org.kepler.actor.RandomDirectoryMaker
Create the new directory.
fire() - Method in class org.kepler.actor.RecordOperation
 
fire() - Method in class org.kepler.actor.rest.RESTService
Sends the results as a String back after executing the appropriate service.
fire() - Method in class org.kepler.actor.ssh.DirectoryCreator
fire
fire() - Method in class org.kepler.actor.ssh.ExecuteCmd
Send the token in the value parameter to the output.
fire() - Method in class org.kepler.actor.ssh.FileCopier
Perform copying.
fire() - Method in class org.kepler.actor.ssh.FileRemover
Perform copying.
fire() - Method in class org.kepler.actor.ssh.SshSession
fire.
fire() - Static method in class org.kepler.authentication.gui.DomainSelectionGUI
Function to show the login dialog It adds the login dialog into the event-dispatching thread
fire() - Static method in class org.kepler.authentication.gui.GAMALoginGUI
Function to show the login dialog It adds the login dialog into the event-dispatching thread
fire() - Method in class org.kepler.authentication.gui.LDAPLoginGUI
Function to show the login dialog It adds the login dialog into the event-dispatching thread
fire() - Method in class org.kepler.bio.actor.BlastTabularResultMerge
Sort the blast tabular results from input port, and truncate them if needed (defined by alignLimit parameter).
fire() - Method in class org.kepler.cloudsharing.actor.ShareToCloud
Read the set of file names.
fire() - Method in class org.kepler.data.conversion.ArrayOfRecordsToRecordOfArrays
Convert an input array of records.
fire() - Method in class org.kepler.data.conversion.binary.EnsembleActor
 
fire() - Method in class org.kepler.data.conversion.StringToN
 
fire() - Method in class org.kepler.data.datasource.dataone.DataOneActor
 
fire() - Method in class org.kepler.data.datasource.dataturbine.DataTurbine
Send the token in the value parameter to the output.
fire() - Method in class org.kepler.data.datasource.dataturbine.DataTurbineWriter
Fire the actor.
fire() - Method in class org.kepler.data.netcdf.NetCDFReader
 
fire() - Method in class org.kepler.data.netcdf.NetCDFWriter
Read the value and indexes, and update the array.
fire() - Method in class org.kepler.dataproxy.datasource.geon.GEONShpResource
 
fire() - Method in class org.kepler.dataproxy.datasource.opendap.OpendapDataSource
 
fire() - Method in class org.kepler.dataproxy.datasource.opendap.OpendapDataSourceODC
 
fire() - Method in class org.kepler.date.CreateDate
Create a date token.
fire() - Method in class org.kepler.date.DateDifference
Send the token in the value parameter to the output.
fire() - Method in class org.kepler.date.DateSequence
 
fire() - Method in class org.kepler.date.DateToString
Convert the input date to a formatted output string.
fire() - Method in class org.kepler.date.RandomDate
Output the most recently generated random date.
fire() - Method in class org.kepler.ddp.actor.ExecutionChoice
 
fire() - Method in class org.kepler.ddp.actor.pattern.DDPDataSink
Write the token in the path parameter to the out port.
fire() - Method in class org.kepler.ddp.actor.pattern.DDPDataSource
Read the data input path and make sure it exists.
fire() - Method in class org.kepler.ddp.actor.pattern.stub.CoGroupInput
Write the key and values from both inputs to the workflow.
fire() - Method in class org.kepler.ddp.actor.pattern.stub.CrossInput
Write the key and value from both inputs to the workflow.
fire() - Method in class org.kepler.ddp.actor.pattern.stub.MapInput
Write key and value to the workflow.
fire() - Method in class org.kepler.ddp.actor.pattern.stub.MatchInput
Write the key and value from both inputs to the workflow.
fire() - Method in class org.kepler.ddp.actor.pattern.stub.ReduceInput
Write the key and values from the input to the workflow.
fire() - Method in class org.kepler.ddp.actor.pattern.stub.StubSinkActor
Read the data the input port.
fire() - Method in class org.kepler.ddp.director.DDPDirector
Run the engine.
fire() - Method in class org.kepler.ddp.director.DDPEngine
Execute the engine.
fire() - Method in class org.kepler.domains.SDF4WS
BASIC SDF director functionality :Calculate the current schedule, if necessary, and iterate the contained actors in the order given by the schedule.
fire() - Method in class org.kepler.gis.actor.bbox.BoundingBoxValues
 
fire() - Method in class org.kepler.gis.actor.bbox.CoverBoundingBox
 
fire() - Method in class org.kepler.gis.actor.bbox.CreateBoundingBox
 
fire() - Method in class org.kepler.gis.actor.bbox.FindCoveringFile
 
fire() - Method in class org.kepler.gis.actor.bbox.ScaleBoundingBox
 
fire() - Method in class org.kepler.gis.actor.calc.Area
 
fire() - Method in class org.kepler.gis.actor.calc.Difference
 
fire() - Method in class org.kepler.gis.actor.calc.JiffleRasterCalculator
 
fire() - Method in class org.kepler.gis.actor.calc.Perimeter
 
fire() - Method in class org.kepler.gis.actor.conversions.BoundingBoxToVector
 
fire() - Method in class org.kepler.gis.actor.conversions.VectorToGeoJSONString
 
fire() - Method in class org.kepler.gis.actor.conversions.VectorToRaster
 
fire() - Method in class org.kepler.gis.actor.Crop
 
fire() - Method in class org.kepler.gis.actor.CRSActor
 
fire() - Method in class org.kepler.gis.actor.ExtractPolygons
 
fire() - Method in class org.kepler.gis.actor.farsite.GenerateWindFile
 
fire() - Method in class org.kepler.gis.actor.GetBoundingBox
Output the bounding box for the data.
fire() - Method in class org.kepler.gis.actor.GetCentroids
 
fire() - Method in class org.kepler.gis.actor.io.GISWriter
 
fire() - Method in class org.kepler.gis.actor.io.RasterReader
 
fire() - Method in class org.kepler.gis.actor.io.RasterWriter
 
fire() - Method in class org.kepler.gis.actor.io.VectorReader
 
fire() - Method in class org.kepler.gis.actor.io.VectorWriter
 
fire() - Method in class org.kepler.gis.actor.kml.KMLCombineFiles
 
fire() - Method in class org.kepler.gis.actor.kml.KMLWriter
 
fire() - Method in class org.kepler.gis.actor.kml.WriteTimestampToKML
 
fire() - Method in class org.kepler.gis.actor.landscape.CreateLandscape
 
fire() - Method in class org.kepler.gis.actor.proj.GetProjection
 
fire() - Method in class org.kepler.gis.actor.proj.GetUTMZone
 
fire() - Method in class org.kepler.gis.actor.proj.Reproject
 
fire() - Method in class org.kepler.gis.actor.pylaski.GetPylaskiMeasurements
 
fire() - Method in class org.kepler.gis.actor.pylaski.PylaskiProperty
 
fire() - Method in class org.kepler.gis.actor.SplitBoundingBox
Deprecated.
 
fire() - Method in class org.kepler.gis.actor.VectorCombineFiles
 
fire() - Method in class org.kepler.gis.actor.VectorFilter
 
fire() - Method in class org.kepler.gis.actor.VectorProperty
 
fire() - Method in class org.kepler.gis.actor.VectorSort
Sort the features based on the property name.
fire() - Method in class org.kepler.gis.actor.windninja.ATMCombineFiles
 
fire() - Method in class org.kepler.gis.display.ENMPCPVisualizer
 
fire() - Method in class org.kepler.gis.display.JumpGMLDisplayer
 
fire() - Method in class org.kepler.gis.display.JumpSHPDisplayer
 
fire() - Method in class org.kepler.metadata.MetadataParser
 
fire() - Method in class org.kepler.monitor.test.ActorWithProgressBar
Broadcasts the input token.
fire() - Method in class org.kepler.monitor.test.ActorWithTokenCounters
Broadcasts every other input token.
fire() - Method in class org.kepler.monitor.test.ActorWithTrafficLight
Broadcasts the input token.
fire() - Method in class org.kepler.objectmanager.cache.DataCacheGetActor
 
fire() - Method in class org.kepler.objectmanager.cache.DataCachePutActor
 
fire() - Method in class org.kepler.provenance.actor.AddProvenanceKeyValues
 
fire() - Method in class org.kepler.scriptengine.ScriptEngineActor
Invoke the fire() method in the script.
fire() - Method in class org.kepler.sms.actors.MergeActor
 
fire() - Method in class org.kepler.spark.actor.SaveableModelActor
Get the model path and make sure it's not empty.
fire() - Method in class org.kepler.spark.mllib.ConvertColumns
 
fire() - Method in class org.kepler.spark.mllib.CreateLabeledPoint
 
fire() - Method in class org.kepler.spark.mllib.CreateVectorRDD
 
fire() - Method in class org.kepler.spark.mllib.DatasetToJson
 
fire() - Method in class org.kepler.spark.mllib.DropColumns
 
fire() - Method in class org.kepler.spark.mllib.ExtractColumns
 
fire() - Method in class org.kepler.spark.mllib.GetLiveMeasurements
Waits for weather station data then packages it into a Spark data frame.
fire() - Method in class org.kepler.spark.mllib.KMeansApply
 
fire() - Method in class org.kepler.spark.mllib.KMeansClustering
 
fire() - Method in class org.kepler.spark.mllib.KMeansModel
 
fire() - Method in class org.kepler.spark.mllib.RandomForestModel
 
fire() - Method in class org.kepler.spark.mllib.RemoveNulls
 
fire() - Method in class org.kepler.spark.mllib.RemoveRowsWithNulls
 
fire() - Method in class org.kepler.spark.mllib.SantaAnaDetect
 
fire() - Method in class org.kepler.spark.mllib.SantaAnaIdentify
 
fire() - Method in class org.kepler.spark.mllib.SparkSQLQuery
 
fire() - Method in class org.kepler.spark.mllib.Standardize
 
fire() - Method in class org.kepler.spark.mllib.StandardizeApply
 
fire() - Method in class org.kepler.spark.mllib.SVMApply
 
fire() - Method in class org.kepler.spark.mllib.SVMKModel
 
fire() - Method in class org.kepler.spark.mllib.VectorAssemble
 
fire() - Method in class org.kepler.webview.actor.WebView
 
fire() - Method in class org.nees.CreateUniqueFile
Create the file using java.lang.File.createTempFile().
fire() - Method in class org.resurgence.actor.ArrayToString
Take the array and print out the elements.
fire() - Method in class org.resurgence.actor.BooleanAccumulator
Take the booleans and combine them.
fire() - Method in class org.resurgence.actor.DirectoryMaker
Create the new directory.
fire() - Method in class org.resurgence.actor.FileArrayPrinter
Take the directory and print out the file array.
fire() - Method in class org.resurgence.actor.FileCopier
Take the files and put them into the new directory.
fire() - Method in class org.resurgence.actor.PermanentStringConstant
Send the token in the value parameter to the output.
fire() - Method in class org.resurgence.actor.SimpleFileReader
Output the data read from the file as a string.
fire() - Method in class org.resurgence.actor.StatusChecker
...
fire() - Method in class org.resurgence.actor.StringAccumulator
Take the partial strings and print out the whole string.
fire() - Method in class org.resurgence.actor.StringSplitter
Take the string and split it into an array.
fire() - Method in class org.resurgence.actor.StringToInt
Consume one string token on the input port and produce a new integer token on the output port.
fire() - Method in class org.resurgence.actor.StringToLong
Consume one string token on the input port and produce a new integer token on the output port.
fire() - Method in class org.resurgence.actor.TextFileWriter
Read an input string and write it to the corresponding file.
fire() - Method in class org.resurgence.actor.TokenCounter
Consume and count all tokens and print out their number.
fire() - Method in class org.ROADnet.ObjectToRecord
Accept an ObjectToken from the input and produce a corresponding RecordToken on the output.
fire() - Method in class org.ROADnet.OrbImageSource
Reap one packet from the ORB, unstuff it as an OrbImagePacket, and output the resulting ImageToken (containing a java.awt.Image object).
fire() - Method in class org.ROADnet.OrbLogger
This method first determines how many threads are currently running in the workflow.For each of the weather elements such as (Temp,Press,Wind,Humidity) we get the appropriate filter (regular expression pattern) and narrow down the source names to unstuff for values.
fire() - Method in class org.ROADnet.OrbPacketChannelExtractor
Process a token
fire() - Method in class org.ROADnet.OrbPacketObjectSource
Reap one packet from the ORB, and broadcast it to the output port as an ObjectToken holding an OrbPacket object.
fire() - Method in class org.ROADnet.OrbSensorDataSource
Reap one packet from the ORB, unstuff it as an OrbImagePacket, and output the resulting ImageToken (containing a java.awt.Image object).
fire() - Method in class org.ROADnet.OrbWaveformSink
 
fire() - Method in class org.ROADnet.OrbWaveformSource
Reap one packet from the ORB and distribute the samples contained in channels to the output port.
fire() - Method in class org.ROADnet.QAQC
Compute the product of the input and the factor.
fire() - Method in class org.ROADnet.RecordToObject
Accept an ObjectToken from the input and produce a corresponding RecordToken on the output.
fire() - Method in class org.sdm.spa.actors.io.DirectoryCreate
Create the directory with the name taken from the input port and output either the error or an empty string along the errors port.
fire() - Method in class org.sdm.spa.actors.piw.viz.VizActor
Also for testing, if called, create the visualization frame then stop calling this actor This is just set up this way for testing and needs to be changed.
fire() - Method in class org.sdm.spa.actors.transport.GenericFileCopier
Send the token in the value parameter to the output.
fire() - Method in class org.sdm.spa.ArchiveCounter
fire
fire() - Method in class org.sdm.spa.ArrayPermute
Compute the permutations of the inputs and send to output port.
fire() - Method in class org.sdm.spa.BrowserUI
Given a ...., BrowserUI actor opens a broser ...
fire() - Method in class org.sdm.spa.CommandLine
...
fire() - Method in class org.sdm.spa.CommandLineExec
Send the exitCode and outputFileHandle(optional) to the result port.
fire() - Method in class org.sdm.spa.CreateExpressionFromQuery
 
fire() - Method in class org.sdm.spa.CreateRequestFromResult
 
fire() - Method in class org.sdm.spa.DatabaseWriter
Read a string token for the query from the input port, execute it on the database and output the query result.
fire() - Method in class org.sdm.spa.DelayStreamToASpecificElement
fire
fire() - Method in class org.sdm.spa.Email
Given a ...., Email actor ...
fire() - Method in class org.sdm.spa.EnumItemTriggered
Send the token in the value parameter to the output.
fire() - Method in class org.sdm.spa.FASTACounter
Count the number of FASTA entries.
fire() - Method in class org.sdm.spa.gui.UserInteractiveShell
Read and display the input, then wait for user input and produce the user data on the output.
fire() - Method in class org.sdm.spa.MatchDisplay
It receives GI number and the Match result in a string.
fire() - Method in class org.sdm.spa.MessageBasedWebService
Deprecated.
Get the URL address of the the location of the web service defined by the given WSDL.
fire() - Method in class org.sdm.spa.Pause
If any of the channels on the input port contain a true token, the cause postfire() to pause the Manager, display a dialog with a button to resume execution and send a true token.
fire() - Method in class org.sdm.spa.ProcessFileRT
Send the token in the value parameter to the output.
fire() - Method in class org.sdm.spa.Repeat
Deprecated.
Fire the actor.
fire() - Method in class org.sdm.spa.SoaplabAnalysis
Gets the client as input and given the standard soaplab operation, calls that specific operation on the client.
fire() - Method in class org.sdm.spa.SoaplabChooseOperation
Gets a list of input ports configured with the actor and finally outputs an object containing all the inputValues for the set_<name> operation as well as name of operation itself.
fire() - Method in class org.sdm.spa.SoaplabChooseResultType
Calls the appropriate get_<name> operation on the client and outputs the result obtained.
fire() - Method in class org.sdm.spa.SoaplabServiceStarter
For each of the connected input port, retrieve the input Values from the port ( an object containing the set_<name> operation as well its respective input Values).
fire() - Method in class org.sdm.spa.Ssh2Exec
Send the token in the value parameter to the output.
fire() - Method in class org.sdm.spa.StringReverse
If there is an input string, reverse it and produce that at the output.
fire() - Method in class org.sdm.spa.SyncOnTerminator
fire
fire() - Method in class org.sdm.spa.TextualInteractionShell
Read and display the input, then wait for user input and produce the user data on the output.
fire() - Method in class org.sdm.spa.Timestamp
Send the token in the value parameter to the output.
fire() - Method in class org.sdm.spa.WebService
Get the URL address of the the location of the web service defined by the given WSDL.
fire() - Method in class org.sdm.spa.WebServiceStub
Deprecated.
Get the URL address of the the location of the web service defined by the given WSDL.
fire() - Method in class org.sdm.spa.WSWithComplexTypes
Create and send the request, and send the response to the appropriate output ports.
fire() - Method in class org.sdm.spa.XMLAssembler
Read each input port, assemble the XML document, and send it to all output ports.
fire() - Method in class org.sdm.spa.XMLDisassembler
Read the XML input and send pieces to the correct output ports.
fire() - Method in class org.sdm.spa.XMLUpdater
Send the token in the value parameter to the output.
fire() - Method in class org.sdm.spa.XPath
Take in an XMLToken and the XPath expression, and return an ArrayToken containing XMLTokens representing the result of selecting nodes using the XPath expression.
fire() - Method in class org.sdm.spa.XSLTActor
 
fire() - Method in class org.skidlkit.TextFileReader
Read the input file name string if it is other than null ...
fire() - Method in class org.srb.DataGridTransfer
Transfer the file or directory, from the source URL to the destination URL.
fire() - Method in class org.srb.SGet
Upload the file to the SRB.
fire() - Method in class org.srb.SGetPhysicalLocation
Get the physical location of SRB logical file paths.
fire() - Method in class org.srb.SProxy
Upload the file to the SRB.
fire() - Method in class org.srb.SPut
Upload the file to the SRB.
fire() - Method in class org.srb.SRBAddMD
Add the metadata conditions to the specified file/directory.
fire() - Method in class org.srb.SRBConnect
Connects to SRB and returns a connection reference.
fire() - Method in class org.srb.SRBCreateQueryConditions
Translate user selcted conditions into an array of strings.
fire() - Method in class org.srb.SRBCreateQueryInterface
Get the physical location of SRB logical file paths.
fire() - Method in class org.srb.SRBDisconnect
Closes the SRB connection.
fire() - Method in class org.srb.SRBGetMD
Get the user defined metadata for SRB file paths.
fire() - Method in class org.srb.SRBProxyCommand
Sends a proxy command to be executed on SRB.
fire() - Method in class org.srb.SRBQueryMD
Returns an array of all the file paths satisfying the constraints.
fire() - Method in class org.srb.SRBReader
Accepts an SRBFileSystem reference and a file name and outputs the file content (Array of Bytes).
fire() - Method in class org.srb.SRBWriter
Accepts an SRBFileSystem reference and a file name and outputs the file content (Array of Bytes).
fire() - Method in class org.surge.RecordMerger
Merge RecordTokens from all input ports.
fire() - Method in class org.surge.RecordToStrings
Send the token in the value parameter to the output.
fire() - Method in class org.surge.StringsToRecord
Send the token in the value parameter to the output.
fire() - Method in class ptolemy.actor.AtomicActor
Do nothing.
fire() - Method in class ptolemy.actor.CompositeActor
If this actor is opaque, transfer any data from the input ports of this composite to the ports connected on the inside, and then invoke the fire() method of its local director.
fire() - Method in class ptolemy.actor.Director
Iterate all the deeply contained actors of the container of this director exactly once.
fire() - Method in class ptolemy.actor.DoNothingDirector
 
fire() - Method in interface ptolemy.actor.Executable
Fire the actor.
fire() - Method in class ptolemy.actor.lib.AbsoluteValue
Compute the absolute value of the input.
fire() - Method in class ptolemy.actor.lib.Accumulator
Consume at most one token from each channel of the input port, add it to the running sum, and produce the result at the output port.
fire() - Method in class ptolemy.actor.lib.AddSubtract
If there is at least one token on the input ports, add tokens from the plus port, subtract tokens from the minus port, and send the result to the output port.
fire() - Method in class ptolemy.actor.lib.ArrayAccumulate
Consume at most one ArrayToken from the input, append it to the accumulating token, and produce the accumulated result on the output.
fire() - Method in class ptolemy.actor.lib.ArrayAppend
Consume at most one ArrayToken from each channel of the input port and produce a single ArrayToken on the output port that contains all of the tokens contained in all of the arrays read from the input.
fire() - Method in class ptolemy.actor.lib.ArrayAverage
Consume at most one array from the input port and produce the average of its elements on the output port.
fire() - Method in class ptolemy.actor.lib.ArrayContains
If there is an array input, then check to see whether it contains the element given by the element port-parameter, and output true or false accordingly.
fire() - Method in class ptolemy.actor.lib.ArrayElement
Consume at most one array from the input port and produce one of its elements on the output port.
fire() - Method in class ptolemy.actor.lib.ArrayElementAsMatrix
Consume at most one array from the input port and produce one of its elements on the output port.
fire() - Method in class ptolemy.actor.lib.ArrayExtract
Consume one array from the input port and send a subarray to the output port, padding the subarray with zeros if necessary.
fire() - Method in class ptolemy.actor.lib.ArrayLength
Consume at most one array from the input port and produce its length on the output port.
fire() - Method in class ptolemy.actor.lib.ArrayLevelCrossing
Consume at most one array from the input ports and produce the index of the first bin that breaks the threshold.
fire() - Method in class ptolemy.actor.lib.ArrayMaximum
Consume at most one array from the input port and produce the maximum of its elements on the output port and the index of that element on the index port.
fire() - Method in class ptolemy.actor.lib.ArrayMinimum
Consume at most one array from the input port and produce the minimum of its elements on the output port and the index of that element on the index port.
fire() - Method in class ptolemy.actor.lib.ArrayPeakSearch
Consume at most one array from the input port and produce two arrays containing the indices and values of the identified peaks.
fire() - Method in class ptolemy.actor.lib.ArrayRemoveElement
If there is an array input, consume it and create a new array that contains all elements of the input that are not equal to the value given by the element port-parameter.
fire() - Method in class ptolemy.actor.lib.ArraySort
Consume at most one array from the input port and produce a sorted array on the output port.
fire() - Method in class ptolemy.actor.lib.ArraySum
Consume at most one array from the input port and produce the average of its elements on the output port.
fire() - Method in class ptolemy.actor.lib.ArrayToElements
If there is a token at the input, read the ArrayToken from the input port, and for each channel i of the output port, send the i-th element of this array to this channel.
fire() - Method in class ptolemy.actor.lib.ArrayToMatrix
If there is a token at the input, read the array from the input port, and construct and send to the output a matrix containing the values from the array.
fire() - Method in class ptolemy.actor.lib.ArrayUpdate
Consume one array from the input port and send a subarray to the output port, padding the subarray with zeros if necessary.
fire() - Method in class ptolemy.actor.lib.Assert
Override the base class to check the result of the evaluation of the expression.
fire() - Method in class ptolemy.actor.lib.Average
Consume at most one token from the input and compute the average of the input tokens so far.
fire() - Method in class ptolemy.actor.lib.Bernoulli
Send a random boolean to the output.
fire() - Method in class ptolemy.actor.lib.BooleanMultiplexor
Read all inputs that are known, and if the select input is true, then output the token consumed from the trueInput port, otherwise output the token from the falseInput port.
fire() - Method in class ptolemy.actor.lib.BooleanSelect
Read a token from the control port or from the input designated by the previously read input from the control port.
fire() - Method in class ptolemy.actor.lib.BooleanSwitch
Read a token from each input port.
fire() - Method in class ptolemy.actor.lib.BusAssembler
Iterate through input ports and transfer data sequentially from input channels to output channels, maintaining input to output channel mapping.
fire() - Method in class ptolemy.actor.lib.BusDisassembler
 
fire() - Method in class ptolemy.actor.lib.ClassWrapper
Read at most one token from each input port.
fire() - Method in class ptolemy.actor.lib.Clock
Deprecated.
Output the current value of the clock if the time is right and, if connected, a trigger has been received.
fire() - Method in class ptolemy.actor.lib.colt.ColtBeta
Send a random number with a Beta distribution to the output.
fire() - Method in class ptolemy.actor.lib.colt.ColtBinomial
Send a random number with a Binomial distribution to the output.
fire() - Method in class ptolemy.actor.lib.colt.ColtBinomialSelector
Send the trial distributions to the output.
fire() - Method in class ptolemy.actor.lib.colt.ColtBreitWigner
Send a random number with a BreitWigner distribution to the output.
fire() - Method in class ptolemy.actor.lib.colt.ColtChiSquare
Send a random number with a ChiSquare distribution to the output.
fire() - Method in class ptolemy.actor.lib.colt.ColtExponential
Send a random number with a Exponential distribution to the output.
fire() - Method in class ptolemy.actor.lib.colt.ColtExponentialPower
Send a random number with a ExponentialPower distribution to the output.
fire() - Method in class ptolemy.actor.lib.colt.ColtGamma
Send a random number with a Gamma distribution to the output.
fire() - Method in class ptolemy.actor.lib.colt.ColtHyperGeometric
Send a random number with a HyperGeometric distribution to the output.
fire() - Method in class ptolemy.actor.lib.colt.ColtLogarithmic
Send a random number with a Logarithmic distribution to the output.
fire() - Method in class ptolemy.actor.lib.colt.ColtNegativeBinomial
Send a random number with a NegativeBinomial distribution to the output.
fire() - Method in class ptolemy.actor.lib.colt.ColtNormal
Send a random number with a Normal distribution to the output.
fire() - Method in class ptolemy.actor.lib.colt.ColtPoisson
Send a random number with a Poisson distribution to the output.
fire() - Method in class ptolemy.actor.lib.colt.ColtPoissonSlow
Send a random number with a PoissonSlow distribution to the output.
fire() - Method in class ptolemy.actor.lib.colt.ColtStudentT
Send a random number with a StudentT distribution to the output.
fire() - Method in class ptolemy.actor.lib.colt.ColtVonMises
Send a random number with a VonMises distribution to the output.
fire() - Method in class ptolemy.actor.lib.colt.ColtZeta
Send a random number with a Zeta distribution to the output.
fire() - Method in class ptolemy.actor.lib.comm.ConvolutionalCoder
Read uncodedRate bits from the input port and shift them into the shift register.
fire() - Method in class ptolemy.actor.lib.comm.DeScrambler
Read bit from the input port and fill it into the shift register to descramble.
fire() - Method in class ptolemy.actor.lib.comm.HadamardCode
Read from the associated index port if there is any input.
fire() - Method in class ptolemy.actor.lib.comm.HammingCoder
If the attributes has changed, check the validity of uncodedRate and codedRate.
fire() - Method in class ptolemy.actor.lib.comm.HammingDecoder
If the attributes has changed, check the validity of uncodedRate and codedRate.
fire() - Method in class ptolemy.actor.lib.comm.HuffmanBasic
Generate the Huffman codebook for the given pmf, and encode the input into booleans and send them to the output port.
fire() - Method in class ptolemy.actor.lib.comm.HuffmanCoder
Generate the Huffman codebook for the given pmf, and encode the input into booleans and send them to the output port.
fire() - Method in class ptolemy.actor.lib.comm.HuffmanDecoder
Generate the Huffman codebook for the given pmf, and encode the input into booleans and send them to the output port.
fire() - Method in class ptolemy.actor.lib.comm.LempelZivCoder
Encode the input into Lempel-Ziv code while generating the code book.
fire() - Method in class ptolemy.actor.lib.comm.LempelZivDecoder
Decode the Lempel-Ziv code while generating the decode book.
fire() - Method in class ptolemy.actor.lib.comm.Scrambler
Read a bit from the input port and shift it into the shift register to scramble.
fire() - Method in class ptolemy.actor.lib.comm.Slicer
Consume the inputs and produce the corresponding symbol.
fire() - Method in class ptolemy.actor.lib.comm.ViterbiDecoder
Read n inputs and produce k outputs, where n is the number of integers in polynomialArray and k is the value of the uncodedRate parameter.
fire() - Method in class ptolemy.actor.lib.Commutator
Read blockSize tokens from each input channel and send them to the output port.
fire() - Method in class ptolemy.actor.lib.ComputeHistogram
Read at most one input token from each input channel and update the histogram.
fire() - Method in class ptolemy.actor.lib.ConfigurationSelect
Read a token from each input port.
fire() - Method in class ptolemy.actor.lib.ConfigurationSwitch
Read a token from each input port.
fire() - Method in class ptolemy.actor.lib.Const
Send the token in the value parameter to the output.
fire() - Method in class ptolemy.actor.lib.conversions.AnythingToDouble
Deprecated.
Read exactly one token from the input and output the token if it is double or a NaN token.
fire() - Method in class ptolemy.actor.lib.conversions.BooleanToAnything
Read exactly one token from the input and output the token given by either the falseValue or trueValue parameter.
fire() - Method in class ptolemy.actor.lib.conversions.CartesianToComplex
Consume exactly one token from each input port and output the converted complex token on the output port.
fire() - Method in class ptolemy.actor.lib.conversions.CartesianToPolar
Consume one double token from each of the two input ports (x and y), and output one new double token on each of the two output ports (magnitude and angle).
fire() - Method in class ptolemy.actor.lib.conversions.ComplexToCartesian
Consume a complex token from the input port and output a new double token on each of the two output ports (the real and imaginary parts of the input complex token).
fire() - Method in class ptolemy.actor.lib.conversions.ComplexToPolar
Consume one complex token on the input port and output a new double token on each of the two output ports (magnitude and angle).
fire() - Method in class ptolemy.actor.lib.conversions.DateToString
Consume one StringToken on the input port and output a new Datetoken.
fire() - Method in class ptolemy.actor.lib.conversions.DoubleToFix
Read at most one token from the input and output the converted fixed-point value with the precision given by the precision parameter, overflow strategy given by the overflow parameter, and rounding strategy given by the rounding parameter.
fire() - Method in class ptolemy.actor.lib.conversions.ExpressionToToken
Output a token that results from evaluating the expression given by the input string token.
fire() - Method in class ptolemy.actor.lib.conversions.FixToDouble
Read one FixToken from the input and output the converted DoubleToken to the output port.
fire() - Method in class ptolemy.actor.lib.conversions.FixToFix
Read at most one token from the input and convert it to a fixed-point value with the precision given by the precision parameter, overflow strategy given by the overflow parameter, and rounding strategy given by the rounding parameter.
fire() - Method in class ptolemy.actor.lib.conversions.ImageToString
 
fire() - Method in class ptolemy.actor.lib.conversions.IntArrayToString
Consume one array token of integer tokens on the input port and output a new string token on the output port.
fire() - Method in class ptolemy.actor.lib.conversions.InUnitsOf
Convert the input to the units specified by the units parameter.
fire() - Method in class ptolemy.actor.lib.conversions.json.JSONToToken
Read a JSON-formatted String of name/value pairs from the input and produce a corresponding array or record on the output.
fire() - Method in class ptolemy.actor.lib.conversions.json.TokenToJSON
Read a Token from the input and produce a corresponding JSON-formatted string on the output.
fire() - Method in class ptolemy.actor.lib.conversions.LongToDate
Consume one StringToken on the input port and output a new DoubleToken.
fire() - Method in class ptolemy.actor.lib.conversions.LongToDouble
Read exactly one token from the input and output the converted value.
fire() - Method in class ptolemy.actor.lib.conversions.PolarToCartesian
Consume a double token from each of the two input ports (magnitude and angle) and output a double token on each of the two output ports (x and y).
fire() - Method in class ptolemy.actor.lib.conversions.PolarToComplex
Consume a double token from each input port (magnitude and angle) and output a new complex token on the output port.
fire() - Method in class ptolemy.actor.lib.conversions.Round
This computes the specified rounded value of the input.
fire() - Method in class ptolemy.actor.lib.conversions.SmoothToDouble
Read exactly one token from the input and output the token the double value of the token if the token is a SmoothToken.
fire() - Method in class ptolemy.actor.lib.conversions.StringToBoolean
Consume one token, get the string value and convert it to a BooleanToken.
fire() - Method in class ptolemy.actor.lib.conversions.StringToDate
Consume one StringToken on the input port and output a new Datetoken.
fire() - Method in class ptolemy.actor.lib.conversions.StringToDouble
Consume one StringToken on the input port and output a new DoubleToken.
fire() - Method in class ptolemy.actor.lib.conversions.StringToInt
Consume one StringToken and generate an IntToken.
fire() - Method in class ptolemy.actor.lib.conversions.StringToIntArray
Consume one string token on the input port and output a new array token of integer tokens on the output port.
fire() - Method in class ptolemy.actor.lib.conversions.StringToUnsignedByteArray
Consume one string token on the input port and output a new array token of integer tokens on the output port.
fire() - Method in class ptolemy.actor.lib.conversions.StringToXML
Output the XMLToken constructed from the input string.
fire() - Method in class ptolemy.actor.lib.conversions.TokenToExpression
Output a string token whose value is an expression representing the value of the input token.
fire() - Method in class ptolemy.actor.lib.conversions.UnsignedByteArrayToString
Consume one array token of integer tokens on the input port and output a new string token on the output port.
fire() - Method in class ptolemy.actor.lib.Counter
Consume at most one token from each input and update the counter appropriately.
fire() - Method in class ptolemy.actor.lib.CurrentDate
Send the current time to the output.
fire() - Method in class ptolemy.actor.lib.CurrentMicrostep
Send the simulated physical time to the output, which is the currentTime of the enclosing DE director.
fire() - Method in class ptolemy.actor.lib.CurrentTime
Send the current time to the output.
fire() - Method in class ptolemy.actor.lib.DateConstructor
Construct a date token with all tokens present.
fire() - Method in class ptolemy.actor.lib.DateElements
Output all elements of a date if input has a date token.
fire() - Method in class ptolemy.actor.lib.DB
Read a token from the input and convert its value into a decibel representation.
fire() - Method in class ptolemy.actor.lib.Default
If the preferred input is known and present, then its token is sent to the output port.
fire() - Method in class ptolemy.actor.lib.Dictionary
If there is a writeKey input, then update the dictionary; specifically, if there is also a value input, then insert into the dictionary the key-value pair given by these two inputs.
fire() - Method in class ptolemy.actor.lib.Differential
Consume at most one token from the input port and output its value minus the value of the input read in the previous iteration.
fire() - Method in class ptolemy.actor.lib.Discard
Read one token from each input channel and discard it.
fire() - Method in class ptolemy.actor.lib.DiscreteClock
Output the current value of the clock if the clock is currently enabled and, if the trigger input is connected, a trigger has been received.
fire() - Method in class ptolemy.actor.lib.DiscreteRandomSource
Output the token selected in the prefire() method.
fire() - Method in class ptolemy.actor.lib.Distributor
Read at most N tokens from the input port, where N is the width of the output port times the blockSize parameter.
fire() - Method in class ptolemy.actor.lib.DoubleReader
Deprecated.
Output the data read in the prefire.
fire() - Method in class ptolemy.actor.lib.ElementsToArray
Consume one token from each channel of the input port, assemble those tokens into an ArrayToken, and send the result to the output.
fire() - Method in class ptolemy.actor.lib.Exec
Invoke a subprocess, read the input data (if any) and wait for the subprocess to terminate before sending any output or error data to the appropriate ports.
fire() - Method in class ptolemy.actor.lib.ExecutionTime
Read the input token, consume time, the produce on the output the actual execution time used.
fire() - Method in class ptolemy.actor.lib.Exit
Consume and discard at most one token from each input channel.
fire() - Method in class ptolemy.actor.lib.Expression
Evaluate the expression and send its result to the output.
fire() - Method in class ptolemy.actor.lib.Gaussian
Send a random number with a Gaussian distribution to the output.
fire() - Method in class ptolemy.actor.lib.gem5.Gem5Wrapper
Send the current value of the state of this actor to the output.
fire() - Method in class ptolemy.actor.lib.GetCausalityInterface
Read the causality interface from the container and produce a description of it as an output.
fire() - Method in class ptolemy.actor.lib.gui.ArrowKeyProbe
Broadcast the integer value 1 for each key pressed and 0 for each released.
fire() - Method in class ptolemy.actor.lib.gui.ArrowKeySensor
Broadcast the integer value 1 for each key pressed and 0 for each released.
fire() - Method in class ptolemy.actor.lib.gui.ConstPlaceable
Send the token in the value parameter to the output.
fire() - Method in class ptolemy.actor.lib.gui.EventButton
Fire the actor.
fire() - Method in class ptolemy.actor.lib.gui.InteractiveDialog
Read and display any input, then if a new command is available, display it and produce it on the output.
fire() - Method in class ptolemy.actor.lib.gui.InteractiveShell
Read and display the input, then wait for user input and produce the user data on the output.
fire() - Method in class ptolemy.actor.lib.gui.SketchedSource
Produce one data sample from the sketched signal on the output port.
fire() - Method in class ptolemy.actor.lib.gui.SliderSource
Output the value of the slider recorded when prefire() is last called.
fire() - Method in class ptolemy.actor.lib.hoc.ApplyFilterOverArray
Execute the filter model on each input array element until it gets as many elements as specified by the maxOutputLength parameter.
fire() - Method in class ptolemy.actor.lib.hoc.ApplyFunction
If the function is not specified, then perform identity function; otherwise, apply the specified function to its input and output the result.
fire() - Method in class ptolemy.actor.lib.hoc.ApplyFunctionOverSequence
Deprecated.
Consume the inputs, apply the function, and produce the result.
fire() - Method in class ptolemy.actor.lib.hoc.Case
Override the base class to not read inputs, since this has been done in prefire().
fire() - Method in class ptolemy.actor.lib.hoc.CaseDirector
Fire the current refinement.
fire() - Method in class ptolemy.actor.lib.hoc.CatchUpComposite
Fire any piggybacked actors and then delegate the firing to the director.
fire() - Method in class ptolemy.actor.lib.hoc.ExecuteCompositeActor
Run a complete execution of the contained model.
fire() - Method in class ptolemy.actor.lib.hoc.MobileFunction
Deprecated.
If the function is not specified, then perform identity function; otherwise, apply the specified function to its input and output the result.
fire() - Method in class ptolemy.actor.lib.hoc.MobileModel
Save the model here if there is a new model to apply. and then call super.fire().
fire() - Method in class ptolemy.actor.lib.hoc.ModelReference
Run a complete execution of the referenced model.
fire() - Method in class ptolemy.actor.lib.hoc.RunCompositeActor
Run a complete execution of the contained model.
fire() - Method in class ptolemy.actor.lib.hoc.test.PreinitializeMustBeInvoked
 
fire() - Method in class ptolemy.actor.lib.IIR
If at least one input token is available, consume a single input token, apply the filter to that input token, and compute a single output token.
fire() - Method in class ptolemy.actor.lib.image.ImageReader
Output the data read in the prefire.
fire() - Method in class ptolemy.actor.lib.image.ImageRotate
Read one java.awt.Image from each channel and rotate each Image the number of degrees indicated by the rotationInDegrees parameter.
fire() - Method in class ptolemy.actor.lib.image.ImageToString
Read one java.awt.Image from each channel and write information about each image to the output port as a StringToken.
fire() - Method in class ptolemy.actor.lib.image.PGMReader
Output the data read in the prefire.
fire() - Method in class ptolemy.actor.lib.image.URLToImage
Read on StringToken from the input, and output an ObjectToken that contains a java.awt.Image object to the output port.
fire() - Method in class ptolemy.actor.lib.Interpolator
Output the value at the current iteration count.
fire() - Method in class ptolemy.actor.lib.io.CSVReader
Output the data read in the preinitialize() or in the previous invocation of postfire(), if there is any.
fire() - Method in class ptolemy.actor.lib.io.DirectoryListing
Output an array containing file and/or directory names.
fire() - Method in class ptolemy.actor.lib.io.ExpressionReader
Deprecated.
Output the data read in the preinitialize() or postfire() if there is any.
fire() - Method in class ptolemy.actor.lib.io.FileReader
Output the data read from the file or URL as a string.
fire() - Method in class ptolemy.actor.lib.io.LineReader
Output the data read in the preinitialize() or in the previous invocation of postfire(), if there is any.
fire() - Method in class ptolemy.actor.lib.io.TokenReader
Deprecated.
Not implemented entirely yet.
fire() - Method in class ptolemy.actor.lib.Lattice
Consume one input token, if there is one, and produce one output token.
fire() - Method in class ptolemy.actor.lib.LevinsonDurbin
Consume the autocorrelation input, and calculate the predictor coefficients, reflection coefficients, and prediction error power.
fire() - Method in class ptolemy.actor.lib.Limiter
Compute the output and send it to the output port.
fire() - Method in class ptolemy.actor.lib.LinearDifferenceEquationSystem
Consume the input token, compute the system response, and produce outputs.
fire() - Method in class ptolemy.actor.lib.logic.Comparator
Consume exactly one input token from each input port, and compute the specified comparison.
fire() - Method in class ptolemy.actor.lib.logic.Equals
Consume at most one token from each input channel, and output the result of comparing these tokens using the isEqualTo() method of the Token class.
fire() - Method in class ptolemy.actor.lib.logic.IsPresent
Consume at most one token from each input channel, and output a boolean on the corresponding output channel (if there is one).
fire() - Method in class ptolemy.actor.lib.logic.LogicalNot
Consume exactly one token from the input, negate it, and send it to the output.
fire() - Method in class ptolemy.actor.lib.logic.LogicFunction
Deprecated.
Consume at most one input token from each input channel, and produce a token on the output port.
fire() - Method in class ptolemy.actor.lib.logic.LogicGate
Consume at most one input token from each input channel, and produce a token on the output port.
fire() - Method in class ptolemy.actor.lib.logic.TrueGate
Consume at most one token from each input channel, and output a boolean on the corresponding output channel (if there is one).
fire() - Method in class ptolemy.actor.lib.LookupTable
Consume at most one token from the input port and produce the element at the index specified by this token from the table array on the output port.
fire() - Method in class ptolemy.actor.lib.MathFunction
Deprecated.
Consume at most one input token from each input channel, and compute the specified math function of the input.
fire() - Method in class ptolemy.actor.lib.MatrixToArray
If there is a token at the input, read the array from the input port, and construct and send to the output a matrix containing the values from the array.
fire() - Method in class ptolemy.actor.lib.Maximum
Read at most one token from each input channel and broadcast the one with the largest value to the maximumValueoutput.
fire() - Method in class ptolemy.actor.lib.MaxIndex
Deprecated.
Read at most one token from each channel of the input port and produce the channel number of the largest one.
fire() - Method in class ptolemy.actor.lib.MicrostepDelay
Read one token from the input.
fire() - Method in class ptolemy.actor.lib.Minimum
Read at most one token from each input channel and send the one with the least value to the output.
fire() - Method in class ptolemy.actor.lib.ModifyDate
Compute the absolute value of the input.
fire() - Method in class ptolemy.actor.lib.MovingAverage
Consume the inputs and produce the output.
fire() - Method in class ptolemy.actor.lib.MovingMaximum
Deprecated.
Consume a token at the input port, and produce the greater of that value and the maintained maximum value to the output port.
fire() - Method in class ptolemy.actor.lib.Multiplexor
Read a token from the select port and from each channel of the input port, and output a token on the selected channel.
fire() - Method in class ptolemy.actor.lib.MultiplyDivide
If there is at least one token on the input ports, multiply tokens from the multiply port, divide by tokens from the divide port, and send the result to the output port.
fire() - Method in class ptolemy.actor.lib.NonStrictTest
Call super.fire() and set _firedOnce to true.
fire() - Method in class ptolemy.actor.lib.OrderedMerge
Read one token from the port that did not provide the recorded token (or inputA, on the first firing), and output the smaller of the recorded token or the newly read token.
fire() - Method in class ptolemy.actor.lib.OrderedRecordAssembler
Read one token from each input port, assemble them into a RecordToken, and send the RecordToken to the output.
fire() - Method in class ptolemy.actor.lib.PhaseUnwrap
Consume at most one input token and output a value that represents the same angle, but differs from the previous output (or from 0.0, if this is the first output), by less than 2*PI.
fire() - Method in class ptolemy.actor.lib.PoissonClock
Output the current value.
fire() - Method in class ptolemy.actor.lib.Publisher
Read at most one input token from each input channel and send it to the subscribers, if any.
fire() - Method in class ptolemy.actor.lib.PublisherNonStrictTest
Read at most one input token from each input channel and send it to the subscribers, if any.
fire() - Method in class ptolemy.actor.lib.PublisherTest
Read at most one input token from each input channel and send it to the subscribers, if any.
fire() - Method in class ptolemy.actor.lib.Pulse
Output a value if the count of iterations matches one of the entries in the indexes array.
fire() - Method in class ptolemy.actor.lib.python.PythonScript
Invoke the fire() method if defined in the script.
fire() - Method in class ptolemy.actor.lib.Quantizer
Output the quantization of the input.
fire() - Method in class ptolemy.actor.lib.r.RExpression
 
fire() - Method in class ptolemy.actor.lib.r.RExpression2
 
fire() - Method in class ptolemy.actor.lib.Ramp
Send the current value of the state of this actor to the output.
fire() - Method in class ptolemy.actor.lib.RandomInteger
Send a random integer to the output.
fire() - Method in class ptolemy.actor.lib.RandomSource
Generate a new random number if this is the first firing of the iteration.
fire() - Method in class ptolemy.actor.lib.Reader
Deprecated.
Output the data read in the prefire.
fire() - Method in class ptolemy.actor.lib.RecordAssembler
Read one token from each input port, assemble them into a RecordToken, and send the RecordToken to the output.
fire() - Method in class ptolemy.actor.lib.RecordDisassembler
Read one RecordToken from the input port and send its fields to the output ports.
fire() - Method in class ptolemy.actor.lib.RecordUpdater
Read one token from each input port, assemble them into a RecordToken that contains the union of the original input record and each of the update ports.
fire() - Method in class ptolemy.actor.lib.RecursiveLattice
Consume one input token, if there is one, and produce one output token.
fire() - Method in class ptolemy.actor.lib.Remainder
Consume at most one input token and output the remainder after dividing the input by the divisor.
fire() - Method in class ptolemy.actor.lib.RemoveNilTokens
Read tokens from the input and output all non-nil (non-missing) tokens.
fire() - Method in class ptolemy.actor.lib.ResettableTimer
If an output is scheduled to be produced, then produce it.
fire() - Method in class ptolemy.actor.lib.Rician
Send a random number with a Rician distribution to the output.
fire() - Method in class ptolemy.actor.lib.RunningMaximum
Consume a token at the input port, and produce the greater of that value and the maintained maximum value to the output port.
fire() - Method in class ptolemy.actor.lib.RunningMinimum
Consume a token at the input port, and produce the greater of that value and the maintained minimum value to the output port.
fire() - Method in class ptolemy.actor.lib.Sampler
Generate an output if the current time is one of the sampling times.
fire() - Method in class ptolemy.actor.lib.Scale
Compute the product of the input and the factor.
fire() - Method in class ptolemy.actor.lib.Select
Read an input token from the specified input channel and produce it on the output.
fire() - Method in class ptolemy.actor.lib.Sequence
If the enable input is connected, then if it has a true token, produce the next output.
fire() - Method in class ptolemy.actor.lib.Sequencer
Read a token from the sequenceNumber port and from the input port, and output the next token(s) in the sequence, or none if the next token in the sequence has not yet been seen.
fire() - Method in class ptolemy.actor.lib.SequentialClock
Deprecated.
Output the current value of the clock.
fire() - Method in class ptolemy.actor.lib.SetVariable
Read at most one token from the input port and issue a change request to update variables as indicated by the input.
fire() - Method in class ptolemy.actor.lib.SingleEvent
If the current time matches the value of the time parameter, then produce an output token with value given by the value parameter.
fire() - Method in class ptolemy.actor.lib.SingleTokenCommutator
Read at most one token from the current input channel and write that token to the output channel.
fire() - Method in class ptolemy.actor.lib.Sleep
Read input tokens, call Thread.sleep(), and then transfer tokens from inputs to outputs, at most one token from each channel.
fire() - Method in class ptolemy.actor.lib.Source
Read at most one input token from each channel of the trigger input and discard it.
fire() - Method in class ptolemy.actor.lib.string.StringCompare
Consume exactly one input token from each input port, and compute the specified string function of the input taking into account the ignoreCase parameter.
fire() - Method in class ptolemy.actor.lib.string.StringFunction
Perform the desired function on the input string, and send the the resulting string to the output port.
fire() - Method in class ptolemy.actor.lib.string.StringIndexOf
Perform the specified search and output either -1 (the string is not found) or the index of the string that is found.
fire() - Method in class ptolemy.actor.lib.string.StringLength
If there is an input string, find its length and produce the length at the output.
fire() - Method in class ptolemy.actor.lib.string.StringMatches
Pattern match a regular expression against a supplied matchString and output a true if they match and a false otherwise.
fire() - Method in class ptolemy.actor.lib.string.StringReplace
Perform pattern matching and substring replacement, and output the modified string.
fire() - Method in class ptolemy.actor.lib.string.StringSimpleReplace
Deprecated.
Perform pattern matching and substring replacement, and output the modified string.
fire() - Method in class ptolemy.actor.lib.string.StringSplit
Split the input string and send to the output.
fire() - Method in class ptolemy.actor.lib.string.StringSubstring
If there is an input string, find a substring according to the indices given by the port parameters start and stop and produce the substring at the output.
fire() - Method in class ptolemy.actor.lib.SubMatrix
Consume the input matrix and produce the output matrix.
fire() - Method in class ptolemy.actor.lib.Subscriber
Read at most one input token from each input channel and send it to the output.
fire() - Method in class ptolemy.actor.lib.SubscriptionAggregator
Read at most one input token from each input channel, aggregate them, and send the result to the output.
fire() - Method in class ptolemy.actor.lib.Switch
Read a control token, if there is one, and transfer an input token, if there is one, to the output channel specified by the most recent control token, if it is in range.
fire() - Method in class ptolemy.actor.lib.Synchronizer
Consume exactly one token from each input channel and output the tokens on the corresponding output channels.
fire() - Method in class ptolemy.actor.lib.Test
Read one token from each input channel and compare against the value specified in correctValues.
fire() - Method in class ptolemy.actor.lib.test.LoopTest2
 
fire() - Method in class ptolemy.actor.lib.test.SearchTest
Read the search parameter, if it matches "Search 50" then we've "got" data.
fire() - Method in class ptolemy.actor.lib.test.SleepFireTwice
Call super.fire() twice.
fire() - Method in class ptolemy.actor.lib.ThrowException
Read one token from each input channel that has a token, and if any token is true, invoke the model error handler.
fire() - Method in class ptolemy.actor.lib.ThrowModelError
Read one token from each input channel that has a token, and if any token is true, invoke the model error handler.
fire() - Method in class ptolemy.actor.lib.TimeDelay
Send out a token that is scheduled to be produced at the current time, if any.
fire() - Method in class ptolemy.actor.lib.TopLevelCurrentTime
Deprecated.
Send the model time of the top level to the output.
fire() - Method in class ptolemy.actor.lib.Triangular
Send a random number with a triangular distribution to the output.
fire() - Method in class ptolemy.actor.lib.TrigFunction
Compute the specified trigonometric function of the input.
fire() - Method in class ptolemy.actor.lib.tutorial.SimpleALU
If there is at least one token on each of the input ports, the first token from each port is consumed.
fire() - Method in class ptolemy.actor.lib.tutorial.StaticALU
If there is at least one token on each of the input ports, the first token from each port is consumed.
fire() - Method in class ptolemy.actor.lib.UnaryMathFunction
Consume at most one input token from each input channel, and compute the specified math function of the input.
fire() - Method in class ptolemy.actor.lib.Uniform
Send a random number with a uniform distribution to the output.
fire() - Method in class ptolemy.actor.lib.UnionDisassembler
Read one UnionToken from the input port and send its fields to the output ports.
fire() - Method in class ptolemy.actor.lib.UnionMerge
Read all available tokens from each input port, wrap each of them into a UnionToken of which the label matches the name of the originating input port.
fire() - Method in class ptolemy.actor.lib.URLDirectoryReader
Deprecated.
Output the data read in the prefire.
fire() - Method in class ptolemy.actor.lib.VariableClock
Deprecated.
If there is an input on the periodControl port, read it and set the value of the period parameter.
fire() - Method in class ptolemy.actor.lib.VariableSleep
Call Thread.sleep() the first time fire is called and then transfer tokens from inputs to outputs, one token from each channel.
fire() - Method in class ptolemy.actor.lib.VectorAssembler
Read one token from each channel of the input port, assemble those tokens into a DoubleMatrixToken, and send the result to the output.
fire() - Method in class ptolemy.actor.lib.VectorDisassembler
If there is a token at the input, read one column or row vector (i.e. a DoubleMatrixToken with one column or row) from the input port, and for each channel i of the output port, send send the ith element of this column or row vector to this channel.
fire() - Method in class ptolemy.actor.lib.WallClockTime
Output the elapsed time in seconds since the invocation of the initialize() method.
fire() - Method in class ptolemy.actor.lib.xslt.XMLInclusion
Read multiple arrays of XMLTokens from the input and combine them according to the specified template.
fire() - Method in class ptolemy.actor.lib.xslt.XSLTransformer
Consume an XMLToken from the input and apply the XSL transform specified by the styleSheetFile parameter.
fire() - Method in class ptolemy.actor.parameters.ParameterSet
Do nothing.
fire() - Method in class ptolemy.actor.process.ProcessDirector
Wait until a deadlock is detected.
fire() - Method in class ptolemy.actor.process.test.ProcessSink
 
fire() - Method in class ptolemy.actor.process.test.TestProcessActor
Record the firing and force postfire to return false.
fire() - Method in class ptolemy.actor.process.test.TypedTestProcessActor
Record the firing and force postfire to return false.
fire() - Method in class ptolemy.actor.sched.FixedPointDirector
Prefire and fire actors in the order given by the scheduler until the iteration converges.
fire() - Method in class ptolemy.actor.sched.StaticSchedulingDirector
Calculate the current schedule, if necessary, and iterate the contained actors in the order given by the schedule.
fire() - Method in class ptolemy.actor.test.IdentityActor
Fire the actor; transfer the input to the output.
fire() - Method in class ptolemy.actor.test.TestActor
Record the firing.
fire() - Method in class ptolemy.actor.test.TypedTestActor
Record the firing.
fire() - Method in class ptolemy.component.ComponentActor
If this actor is opaque, transfer any data from the input ports of this composite to the ports connected on the inside, and then invoke the fire() method of its local director.
fire() - Method in class ptolemy.domains.continuous.kernel.ContinuousDirector
Perform an integration step.
fire() - Method in class ptolemy.domains.continuous.kernel.ContinuousIntegrator
If the value at the derivative port is known, and the current step size is bigger than 0, perform an integration.
fire() - Method in class ptolemy.domains.continuous.kernel.HybridModalDirector
Fire the model model for one iteration.
fire() - Method in class ptolemy.domains.continuous.kernel.Noise
Produce a number that is linearly interpolated within the current integration step, if linearlyInterpolate is true, or the random number for the beginning of the integration step otherwise.
fire() - Method in class ptolemy.domains.continuous.lib.BandlimitedNoise
Produce a number that is linearly interpolated within the current integration step, if linearlyInterpolate is true, or the random number for the beginning of the integration step otherwise.
fire() - Method in class ptolemy.domains.continuous.lib.ContinuousMerge
Read the input channels in order until either a present input is found or we run out of channels.
fire() - Method in class ptolemy.domains.continuous.lib.ContinuousTimeDelay
 
fire() - Method in class ptolemy.domains.continuous.lib.Derivative
Produce outputs as specified in the class comment.
fire() - Method in class ptolemy.domains.continuous.lib.DifferentialSystem
Override the base class to first set the value of the parameter t to match current time, then to set the local parameters that mirror input values, and then to fire the contained actors.
fire() - Method in class ptolemy.domains.continuous.lib.EventSource
Deprecated.
Emit the discrete event that happens at the current time.
fire() - Method in class ptolemy.domains.continuous.lib.LevelCrossingDetector
Detect whether the current input compared to the input on the last iteration indicates that a level crossing in the appropriate direction has occurred, if the time is within errorTolerance of the time at which the crossing occurs.
fire() - Method in class ptolemy.domains.continuous.lib.PeriodicSampler
Generate an output if the current time is one of the sampling times and the microstep matches.
fire() - Method in class ptolemy.domains.continuous.lib.ZeroOrderHold
Output the latest token consumed from the consumeCurrentEvents() call.
fire() - Method in class ptolemy.domains.ddf.kernel.DDFDirector
Execute the model for one iteration.
fire() - Method in class ptolemy.domains.ddf.lib.ActorRecursion
Clone the composite actor referred to by the StringParameter recursionActor into itself.
fire() - Method in class ptolemy.domains.ddf.lib.DDFBooleanSelect
Fire the actor once.
fire() - Method in class ptolemy.domains.ddf.lib.DDFSelect
Fire the actor once.
fire() - Method in class ptolemy.domains.de.demo.SmartSender.SmartSender
If the output port is connected, then send a count of the firing to the output; otherwise, issue a change request that will search for an input port to connect to.
fire() - Method in class ptolemy.domains.de.kernel.DEDirector
Fire actors according to events in the event queue.
fire() - Method in class ptolemy.domains.de.kernel.DEThreadActor
Awake the thread running this actor.
fire() - Method in class ptolemy.domains.de.lib.AverageOverTime
Fire this actor.
fire() - Method in class ptolemy.domains.de.lib.DateToEvent
Read date tokens from the input and store them until the real time equals the date in the token.
fire() - Method in class ptolemy.domains.de.lib.DateToModelTime
Read DateToken on input and output corresponding model time value.
fire() - Method in class ptolemy.domains.de.lib.Derivative
Consume at most one token from the input port and output its value minus the value of the input read in the previous iteration, divided by the time gap between the two events.
fire() - Method in class ptolemy.domains.de.lib.EventButton
Deprecated.
Fire the actor.
fire() - Method in class ptolemy.domains.de.lib.EventFilter
Consume at most one token from each channel of the input port.
fire() - Method in class ptolemy.domains.de.lib.EventToDate
Output a DateToken with a date that corresponds to the current model time.
fire() - Method in class ptolemy.domains.de.lib.GetCurrentMicrostep
Deprecated.
Send the simulated physical time to the output, which is the currentTime of the enclosing DE director.
fire() - Method in class ptolemy.domains.de.lib.Inhibit
Consume at most one token from each channel of the input port.
fire() - Method in class ptolemy.domains.de.lib.Integrator
Consume at most one token from the input port and output the average of it and the previous input (linear interpolation), multiplied by the time gap between the two events.
fire() - Method in class ptolemy.domains.de.lib.Merge
Read the first available tokens from an input channel and send them to the output port.
fire() - Method in class ptolemy.domains.de.lib.MostRecent
Consume all the tokens in the input ports and record them.
fire() - Method in class ptolemy.domains.de.lib.NonInterruptibleTimer
Deprecated.
Read one token from the input.
fire() - Method in class ptolemy.domains.de.lib.PID
Consume at most one token from the input port and output the PID control.
fire() - Method in class ptolemy.domains.de.lib.Previous
If there is a previous token, then produce it on the output, and then read the input and record it for the next firing.
fire() - Method in class ptolemy.domains.de.lib.QuantizedSampler
Produce an output equal to the input if the input has crossed the quantum; otherwise, produce no output.
fire() - Method in class ptolemy.domains.de.lib.Queue
Put a new input token on the queue and/or produce output data from the queue.
fire() - Method in class ptolemy.domains.de.lib.Register
If there is a token in the trigger port, emit the previously seen inputs from the input port.
fire() - Method in class ptolemy.domains.de.lib.Server
If there is input, read it and put it in the queue.
fire() - Method in class ptolemy.domains.de.lib.SharedQueue
If there is an input at the input port, consume it.
fire() - Method in class ptolemy.domains.de.lib.SuppressSimultaneousEvents
Consume one token from the input port, and output if it is the first token seen at this point in physical time.
fire() - Method in class ptolemy.domains.de.lib.test.TestSource
 
fire() - Method in class ptolemy.domains.de.lib.TestActorPortDepth
Query the director for a description of the depths of its actors and their ports, and produce that description on the output.
fire() - Method in class ptolemy.domains.de.lib.TimeCompare
Fire this actor once.
fire() - Method in class ptolemy.domains.de.lib.TimedDelay
Deprecated.
Read one token from the input.
fire() - Method in class ptolemy.domains.de.lib.TimeGap
Beginning with the second input, produce an output that is the elapsed time since the previous input is received.
fire() - Method in class ptolemy.domains.de.lib.Timer
Deprecated.
Read one token from the input.
fire() - Method in class ptolemy.domains.de.lib.VariableDelay
Deprecated.
Update the delay parameter from the delay port and ensure the delay is not negative.
fire() - Method in class ptolemy.domains.de.lib.WaitingTime
If this firing is triggered by an event at waitee, then output the waiting time for each prior event arrival at waiter since the last arrival of waitee.
fire() - Method in class ptolemy.domains.de.lib.Wire
Deprecated.
If there is a token in on any channel of the input port, output the most recent value on all the output port channels.
fire() - Method in class ptolemy.domains.de.test.CancelFireAtTest
Send true to the output and cancel the firing at times 1.0 and 3.0.
fire() - Method in class ptolemy.domains.de.test.SuperdenseTimeTest
Respond to an HTTP request.
fire() - Method in class ptolemy.domains.modal.kernel.FSMActor
Set the values of input variables.
fire() - Method in class ptolemy.domains.modal.kernel.FSMDirector
Fire the modal model for one iteration.
fire() - Method in class ptolemy.domains.modal.kernel.ia.InterfaceAutomaton
Choose the enabled transition among the outgoing transitions of the current state.
fire() - Method in class ptolemy.domains.modal.kernel.MultirateFSMDirector
Fire the modal model.
fire() - Method in class ptolemy.domains.modal.kernel.NonStrictFSMDirector
Fire the modal model.
fire() - Method in class ptolemy.domains.modal.kernel.test.ZeroOneSource
Send the current output in the sequence.
fire() - Method in class ptolemy.domains.pn.demo.QR.ND_1
Fire the actor.
fire() - Method in class ptolemy.domains.pn.demo.QR.ND_2
Fire the actor.
fire() - Method in class ptolemy.domains.pn.demo.QR.ND_3
Fire the actor.
fire() - Method in class ptolemy.domains.pn.demo.QR.ND_4
Fire the actor.
fire() - Method in class ptolemy.domains.pn.demo.QR.ND_5
Fire the actor.
fire() - Method in class ptolemy.domains.pn.demo.QR.StreamToMatrix
Reads a stream of DoubleTokens and places these tokens in a Matrix.
fire() - Method in class ptolemy.domains.pn.kernel.test.TestDirector
Start a thread for an instance of the inner class "Notification", obtain read access on the workspace 3 times, call wait(obj) on the workspace, ask the inner class to get a write access on the workspace and return after relinquishing the read accesses on the workspace.
fire() - Method in class ptolemy.domains.pn.kernel.test.TestSink
Writes successive integers to the output
fire() - Method in class ptolemy.domains.pn.lib.Starver
Read at most one input token, and if the number of outputs has not yet exceeded the value given by limit, then produce that token on the output.
fire() - Method in class ptolemy.domains.sdf.kernel.SDFDirector
Call super.fire() and reset the _prefire flag.
fire() - Method in class ptolemy.domains.sdf.kernel.test.SDFTestConsumer
Fire the Actor Consume an input token, and append its value to the history.
fire() - Method in class ptolemy.domains.sdf.kernel.test.SDFTestDelay
This fires an actor and may be invoked several times between invocations of prefire() and postfire().
fire() - Method in class ptolemy.domains.sdf.kernel.test.SDFTestJoin
Fire the actor.
fire() - Method in class ptolemy.domains.sdf.kernel.test.SDFTestRamp
Produce several integer tokens with values with incremental values.
fire() - Method in class ptolemy.domains.sdf.kernel.test.SDFTestSplit
Consume two tokens from the input.
fire() - Method in class ptolemy.domains.sdf.kernel.test.SDFTestZeroRate1
Discard tokens received.
fire() - Method in class ptolemy.domains.sdf.kernel.test.SDFTestZeroRate2
Discard tokens received.
fire() - Method in class ptolemy.domains.sdf.lib.ArrayToSequence
Consume the input ArrayToken and produce the outputs.
fire() - Method in class ptolemy.domains.sdf.lib.Autocorrelation
Consume tokens from the input and produce a token on the output that contains an array token that represents an autocorrelation estimate of the consumed tokens.
fire() - Method in class ptolemy.domains.sdf.lib.BitsToInt
Consume numberOfBits BooleanTokens on the input.
fire() - Method in class ptolemy.domains.sdf.lib.BootstrapSampleDelay
During the first iteration, read exactly one input token, update the initialOutputs for a future run and send the token to the output.
fire() - Method in class ptolemy.domains.sdf.lib.Chop
Consume the specified number of input tokens, and produce the specified number of output tokens.
fire() - Method in class ptolemy.domains.sdf.lib.CountTrues
Read at most one token from each input channel and broadcast the one with the largest value to the maximumValueoutput.
fire() - Method in class ptolemy.domains.sdf.lib.DelayLine
Consume a token from the input, push it onto the delay line and produce the output ArrayToken containing the current state of the delay line.
fire() - Method in class ptolemy.domains.sdf.lib.DotProduct
Read a Token from each of the input ports, and output the dot product.
fire() - Method in class ptolemy.domains.sdf.lib.DoubleToMatrix
Deprecated.
Consume consecutive input tokens and produce the output matrix.
fire() - Method in class ptolemy.domains.sdf.lib.DownSample
Consume factor tokens from the input, and select one of them to send to the output based on the phase.
fire() - Method in class ptolemy.domains.sdf.lib.FFT
Consume the inputs and produce the outputs of the FFT filter.
fire() - Method in class ptolemy.domains.sdf.lib.FIR
Consume the inputs and produce the outputs of the FIR filter.
fire() - Method in class ptolemy.domains.sdf.lib.IFFT
Consume the inputs and produce the outputs of the IFFT filter.
fire() - Method in class ptolemy.domains.sdf.lib.IntToBits
Consume a single IntToken on the input.
fire() - Method in class ptolemy.domains.sdf.lib.LineCoder
Consume the inputs and produce the corresponding symbol.
fire() - Method in class ptolemy.domains.sdf.lib.LMSAdaptive
Consume the inputs, update the taps, and produce the outputs.
fire() - Method in class ptolemy.domains.sdf.lib.MatrixJoin
Consume the inputs and produce the output matrix.
fire() - Method in class ptolemy.domains.sdf.lib.MatrixSplit
Consume the input matrix and produce the output matrices.
fire() - Method in class ptolemy.domains.sdf.lib.MatrixToDouble
Deprecated.
Consume a matrix input and produce consecutive output tokens.
fire() - Method in class ptolemy.domains.sdf.lib.MatrixToSequence
Consume the input and produce the output sequence.
fire() - Method in class ptolemy.domains.sdf.lib.Repeat
Consume blockSize input tokens from the input port.
fire() - Method in class ptolemy.domains.sdf.lib.SampleDelay
Read exactly one input token and send it to the output.
fire() - Method in class ptolemy.domains.sdf.lib.SequenceToArray
Consume the inputs and produce the output ArrayToken.
fire() - Method in class ptolemy.domains.sdf.lib.SequenceToMatrix
Consume the inputs and produce the output matrix.
fire() - Method in class ptolemy.domains.sdf.lib.UpSample
Consume the input Token and produce the same token on the output.
fire() - Method in class ptolemy.domains.sdf.lib.VariableFIR
Consume the inputs and produce the outputs of the FIR filter.
fire() - Method in class ptolemy.domains.sdf.lib.VariableLattice
Consume the inputs and produce the outputs of the filter.
fire() - Method in class ptolemy.domains.sdf.lib.VariableRecursiveLattice
Consume the inputs and produce the outputs of the filter.
fire() - Method in class ptolemy.domains.sdf.lib.vq.HTVQEncode
Fire this actor.
fire() - Method in class ptolemy.domains.sdf.lib.vq.ImageContrast
Fire the actor.
fire() - Method in class ptolemy.domains.sdf.lib.vq.ImagePartition
Fire this actor.
fire() - Method in class ptolemy.domains.sdf.lib.vq.ImageSequence
Fire this actor.
fire() - Method in class ptolemy.domains.sdf.lib.vq.ImageUnpartition
Fire this actor.
fire() - Method in class ptolemy.domains.sdf.lib.vq.PSNR
Fire the actor.
fire() - Method in class ptolemy.domains.sdf.lib.vq.VQDecode
Fire this actor.
fire() - Method in class ptolemy.domains.sdf.optimize.lib.DummySource
Fire the source actor and output a frame.
fire() - Method in class ptolemy.domains.sdf.optimize.OptimizingSDFDirector
Calculate the current schedule, if necessary, and iterate the contained actors in the order given by the schedule.
fire() - Method in class ptolemy.domains.sdf.optimize.SharedBufferTransformer
Fire according to the value _nextIterationExclusive in shared or exclusive firing mode.
fire() - Method in class ptolemy.matlab.Expression
Evaluate the expression and send its result to the output.
fire() - Method in class ptolemy.vergil.actor.lib.LEDMatrix
Read a token from the row and column ports and illuminate that led until the next fire.
fire() - Method in class ptolemy.vergil.actor.lib.ModelDisplay
Read the input, if there is any, and issue a change request to apply the MoML in the input to the displayed model.
fire() - Method in class ptolemy.vergil.actor.lib.VisualModelReference
Run a complete execution of the referenced model.
fireAt(Actor, double) - Method in class ptolemy.actor.Director
Deprecated.
Instead of using double as time argument, use a time object instead. As of Ptolemy 4.1, replaced by Director.fireAt(Actor, Time)
fireAt(Actor, Time) - Method in class ptolemy.actor.Director
Request a firing of the given actor at the given model time.
fireAt(Actor, Time, int) - Method in class ptolemy.actor.Director
Request a firing of the given actor at the given model time with the given microstep.
fireAt(Actor, Time, int) - Method in class ptolemy.actor.lib.hoc.CaseDirector
Schedule a firing of the given actor at the given time.
fireAt(Actor, Time) - Method in class ptolemy.actor.util.PeriodicDirectorHelper
Request a firing of the given actor at the given absolute time, and return the time at which the specified will be fired.
fireAt(Actor, Time, int) - Method in class ptolemy.domains.continuous.kernel.ContinuousDirector
Handle firing requests from the contained actors by registering breakpoints.
fireAt(Actor, Time) - Method in class ptolemy.domains.de.kernel.DEDirector
Schedule an actor to be fired at the specified time by posting a pure event to the director, and return the time at which the specified actor will be fired.
fireAt(Actor, Time, int) - Method in class ptolemy.domains.de.kernel.DEDirector
Request a firing of the given actor at the given model time with the given microstep.
fireAt(Actor, Time, int) - Method in class ptolemy.domains.modal.kernel.FSMDirector
Schedule a firing of the given actor at the given time and microstep.
fireAt(Actor, Time) - Method in class ptolemy.domains.modal.kernel.MultirateFSMDirector
Override the base class to ignore the fireAt() call if the specified actor is the controller and the time is the current time.
fireAt(Actor, Time, int) - Method in class ptolemy.domains.pn.kernel.TimedPNDirector
Suspend the calling process until the time has advanced to at least the time specified by the method argument.
fireAt(Actor, Time, int) - Method in class ptolemy.domains.sdf.kernel.SDFDirector
Request a firing of the given actor at the given absolute time, and return the time at which the specified will be fired.
fireAtCurrentTime(Actor) - Method in class ptolemy.actor.Director
Request a firing of the given actor at the current model time or later.
fireAtCurrentTime(Actor) - Method in class ptolemy.domains.de.kernel.DEDirector
Fire the actor actor at the current model time or, if synchronizeToRealTime is enabled and we are past the initialization phase of execution, then fire the actor at the model time that corresponds to the current real time.
fireAtCurrentTime(Actor) - Method in class ptolemy.domains.modal.kernel.MultirateFSMDirector
Override the base class to ignore the fireAt() call if the specified actor is the controller.
fireAtRelativeTime(Actor, Time) - Method in class ptolemy.domains.de.kernel.DEDirector
Schedule an actor to be fired in the specified time relative to the current model time.
fireAtStart - Variable in class ptolemy.actor.lib.PoissonClock
If true, then this actor will request a firing at the start time.
fireAuthentication() - Method in class org.kepler.gui.AuthenticateAction
 
fireContainedActors() - Method in class ptolemy.actor.lib.hoc.RealTimeComposite
Deprecated.
Invoke iterations on the contained actor of the container of this director repeatedly until either it runs out of input data or prefire() returns false.
fireContainerAt(Time) - Method in class ptolemy.actor.Director
Request a firing of the container of this director at the specified time and throw an exception if the executive director does not agree to do it at the requested time.
fireContainerAt(Time, int) - Method in class ptolemy.actor.Director
Request a firing of the container of this director at the specified time, adjusted by the current offset and drift of the local clock, and the specified microstep.
fireContentsChanged() - Method in class org.ecoinformatics.seek.querybuilder.DBWhereModel
Expose the ability to send the UI a notification the model has been updated
fireExclusive - Variable in class ptolemy.domains.sdf.optimize.BufferingProfileFiring
Indicates whether this firing is to be performed exclusively (true) or shared (false).
fireOnlyWhenTriggered - Variable in class ptolemy.actor.lib.hoc.CatchUpComposite.Contents
If false (the default), then whenever any contained actor makes a fireAt() request, that request is passed up to the container, and hence this composite will be fired at the requested time.
firePropertyChange(String, Object, Object) - Method in class org.kepler.workflowrunmanager.gui.DurationCellRenderer
 
firePropertyChange(String, boolean, boolean) - Method in class org.kepler.workflowrunmanager.gui.DurationCellRenderer
 
firePropertyChange(String, Object, Object) - Method in class org.kepler.workflowrunmanager.gui.WRMDefaultTableCellRenderer
 
firePropertyChange(String, boolean, boolean) - Method in class org.kepler.workflowrunmanager.gui.WRMDefaultTableCellRenderer
 
fireStart(FiringEvent.FiringEventType, FireIdType) - Method in class org.kepler.provenance.FireState
Record the start of a firing for this actor.
FireState<FireIdType> - Class in org.kepler.provenance
A utility class to keep track of an actor's firing.
FireState(Actor, int) - Constructor for class org.kepler.provenance.FireState
Construct a FireState with an actor and its id.
FireState.PortAccessType - Enum in org.kepler.provenance
The types of port accesses.
fireStop(FiringEvent.FiringEventType) - Method in class org.kepler.provenance.FireState
Record the stop of a firing, and get the fire index for a type of fire.
fireTableModelChanged() - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelBase
Notifies the table that it has been completely updated.
fireTreeNodesChanged(TreeModelEvent) - Method in class org.sdm.spa.gui.XMLUIP.DomToTreeModelAdapter
 
fireTreeNodesInserted(TreeModelEvent) - Method in class org.sdm.spa.gui.XMLUIP.DomToTreeModelAdapter
 
fireTreeNodesRemoved(TreeModelEvent) - Method in class org.sdm.spa.gui.XMLUIP.DomToTreeModelAdapter
 
fireTreeStructureChanged(TreeModelEvent) - Method in class org.sdm.spa.gui.XMLUIP.DomToTreeModelAdapter
 
fireWorkflowRunManagerEvent(String, KeplerLSID, boolean) - Method in class org.kepler.workflowrunmanager.WorkflowRunManager
 
fireWorkflowRunManagerEvent(String, List<KeplerLSID>, boolean, Object) - Method in class org.kepler.workflowrunmanager.WorkflowRunManager
 
firing - Variable in class org.kepler.profiling.gui.ExecutionMonitorPanel.ActorInfo
The current firing number of the actor.
Firing - Class in ptolemy.actor.sched
This class is a schedule element that contains a reference to an actor and an iteration count.
Firing() - Constructor for class ptolemy.actor.sched.Firing
Construct a firing with a default iteration count equal to one and with no parent schedule.
Firing(Actor) - Constructor for class ptolemy.actor.sched.Firing
Construct a firing with a actor, an iteration count equal to one and no parent schedule.
Firing - Class in ptolemy.graph.sched
This class is a ScheduleElement that contains a reference to a firing element.
Firing() - Constructor for class ptolemy.graph.sched.Firing
Construct a firing with a default iteration count equal to one and with no parent schedule.
Firing(Object) - Constructor for class ptolemy.graph.sched.Firing
Construct a firing with a firingElement, an iteration count equal to one and no parent schedule.
Firing(Class) - Constructor for class ptolemy.graph.sched.Firing
Construct a firing with a given firing element type, an iteration count equal to one and no parent schedule.
firingCountLimit - Variable in class ptolemy.actor.lib.hoc.ExecuteCompositeActor
Indicator to run the contained model a limited number of times.
firingCountLimit - Variable in class ptolemy.actor.lib.hoc.RunCompositeActor
Indicator to run the contained model a limited number of times.
firingCountLimit - Variable in class ptolemy.actor.lib.LimitedFiringSource
If a positive integer, then the number of iterations before the actor indicates to the scheduler that it is finished by returning false in its postfire() method.
firingElementClass() - Method in class ptolemy.graph.sched.ScheduleElement
Return the class type of the firing element in this class.
firingElementIterator() - Method in class ptolemy.graph.sched.Firing
Return the firing element invocation sequence of the schedule in the form of a sequence of firing elements.
firingElementIterator() - Method in class ptolemy.graph.sched.Schedule
Return the firing element invocation sequence of the schedule in the form of a sequence of firing elements.
firingElementIterator() - Method in class ptolemy.graph.sched.ScheduleElement
Return the firing element invocation sequence of the schedule in the form of a sequence of firing elements.
firingEvent(FiringEvent) - Method in class org.kepler.provenance.ProvenanceRecorder
React to an actor firing.
firingEvent(FiringEvent) - Method in class org.kepler.webview.actor.WebViewAttribute
 
firingEvent(FiringEvent) - Method in interface ptolemy.actor.ActorFiringListener
Report an actor firing state.
FiringEvent - Class in ptolemy.actor
An event that is published by directors whenever an actor is activated.
FiringEvent(Director, Actor, FiringEvent.FiringEventType) - Constructor for class ptolemy.actor.FiringEvent
Create a new firing event with the given source, actor, and type.
FiringEvent(Director, Actor, FiringEvent.FiringEventType, int) - Constructor for class ptolemy.actor.FiringEvent
Create a new firing event with the given source, actor, type, and multiplicity.
FiringEvent.FiringEventType - Class in ptolemy.actor
A type of firing event that can be published.
firingIterator() - Method in class ptolemy.actor.sched.Firing
Return the actor invocation sequence in the form of a sequence of firings.
firingIterator() - Method in class ptolemy.actor.sched.Schedule
Return the actor invocation sequence of this schedule in the form of a sequence of firings.
firingIterator() - Method in class ptolemy.actor.sched.ScheduleElement
Return the actor invocation sequence in the form of a sequence of firings.
firingIterator() - Method in class ptolemy.graph.sched.Firing
Return the firing element invocation sequence in the form of a sequence of firings.
firingIterator() - Method in class ptolemy.graph.sched.Schedule
Return the Firing invocation sequence of this schedule in the form of a sequence of firings.
firingIterator() - Method in class ptolemy.graph.sched.ScheduleElement
Return the firing invocation sequence in the form of a sequence of firings.
firingPeriod - Variable in class ptolemy.domains.de.demo.SmartSender.SmartSender
The period at which this actor will execute.
firingQueueThreshold - Variable in class org.kepler.spark.mllib.GetLiveMeasurements
 
firings(Object) - Method in class ptolemy.graph.sched.Schedule
Get firings for the firing element.
FiringsRecordable - Interface in ptolemy.actor
Interface for entities that can report FiringEvents.
first - Variable in class org.kepler.spark.mllib.ConvertColumns
First row of dataframe for debug purposes
first - Variable in class org.kepler.spark.mllib.SparkSQLQuery
The first element of the DataFrame.
first() - Method in class ptolemy.actor.util.TotallyOrderedSet
Return the first element, ie. the smallest element.
first() - Method in class ptolemy.domains.modal.kernel.ia.StatePair
Return the first state in this pair.
first() - Method in class ptolemy.kernel.util.CrossRefList
Return the first container linked to this list, or null if the list is empty.
first() - Method in class ptolemy.kernel.util.NamedList
Get the first element.
firstOperand - Variable in class ptolemy.actor.lib.MathFunction
Deprecated.
The port for the first operand.
firstPort - Variable in class org.kepler.spark.mllib.Standardize
Outputs the first row of the new dataset only for test purpose
firstString - Variable in class ptolemy.actor.lib.string.StringCompare
The input PortParameter for the first string of type string.
fix(int, int, int) - Static method in class ptolemy.data.expr.FixPointFunctions
Create a FixPoint representing the specified integer.
fix(double, int, int) - Static method in class ptolemy.data.expr.FixPointFunctions
Create a FixPoint representing the specified double.
FIX - Static variable in class ptolemy.data.type.BaseType
An alias for the unsized fix data type, provided for backward compatibility with the previous versions of Ptolemy.
FIX_MATRIX - Static variable in class ptolemy.data.type.BaseType
The fix matrix data type.
FixedPointDirector - Class in ptolemy.actor.sched
A base class for directors that have fixed point semantics at each iteration.
FixedPointDirector() - Constructor for class ptolemy.actor.sched.FixedPointDirector
Construct a director in the default workspace with an empty string as its name.
FixedPointDirector(Workspace) - Constructor for class ptolemy.actor.sched.FixedPointDirector
Construct a director in the given workspace with an empty name.
FixedPointDirector(CompositeEntity, String) - Constructor for class ptolemy.actor.sched.FixedPointDirector
Construct a director in the given container with the given name.
FixedPointReceiver - Class in ptolemy.actor.sched
The receiver for use with FixedPointDirector or any of its subclasses.
FixedPointReceiver() - Constructor for class ptolemy.actor.sched.FixedPointReceiver
Construct an FixedPointReceiver with unknown status.
FixedPointReceiver(FixedPointDirector) - Constructor for class ptolemy.actor.sched.FixedPointReceiver
Construct an FixedPointReceiver with unknown status.
FixedPointScheduler - Class in ptolemy.actor.sched
A scheduler for the FixedPointDirector.
FixedPointScheduler(StaticSchedulingDirector, String) - Constructor for class ptolemy.actor.sched.FixedPointScheduler
Construct a scheduler in the given container with the given name.
fixGraphics() - Method in class org.kepler.gui.PlotsEditorPanel
 
fixMatrix() - Method in class ptolemy.data.FixMatrixToken
Return the content of this token as a new 2-D FixPoint matrix.
fixMatrix() - Method in class ptolemy.data.MatrixToken
Return the content of this token as a 2-D fixed point matrix.
FixMatrixToken - Class in ptolemy.data
A token that contains a 2-D FixToken matrix.
FixMatrixToken() - Constructor for class ptolemy.data.FixMatrixToken
Construct a FixMatrixToken with a one by one matrix.
FixMatrixToken(FixPoint[][]) - Constructor for class ptolemy.data.FixMatrixToken
Construct a FixMatrixToken with the specified 2-D matrix.
FixMatrixToken(String) - Constructor for class ptolemy.data.FixMatrixToken
Construct a FixMatrixToken from the specified string.
FixMatrixToken(FixPoint[][], Precision) - Constructor for class ptolemy.data.FixMatrixToken
Construct a FixMatrixToken with the specified 2-D matrix.
FixMatrixToken(Token[], int, int) - Constructor for class ptolemy.data.FixMatrixToken
Construct an FixMatrixToken from the specified array of tokens.
FixMatrixType() - Constructor for class ptolemy.data.type.MatrixType.FixMatrixType
 
fixNameWithSpaces(String) - Static method in class org.ecoinformatics.seek.querybuilder.DBUIUtils
Add brackets around names with spaces
FixPoint - Class in ptolemy.math
The FixPoint class provides a fixed point data type and a set of functions that operate on and return fixed point data.
FixPoint(BigDecimal, Quantization) - Constructor for class ptolemy.math.FixPoint
Construct a FixPoint by converting a bigDecimal to comply with a quantization specification.
FixPoint(FixPoint, Quantization) - Constructor for class ptolemy.math.FixPoint
Construct a new FixPoint object by requantizing the given FixPoint object with a new quantization specification.
FixPoint(double, Quantization) - Constructor for class ptolemy.math.FixPoint
Construct a FixPoint from a double.
FixPoint(int, Quantization) - Constructor for class ptolemy.math.FixPoint
Construct a FixPoint from an integer.
FixPoint(int) - Constructor for class ptolemy.math.FixPoint
Construct a FixPoint from an integer.
FixPoint(int, boolean) - Constructor for class ptolemy.math.FixPoint
Construct a FixPoint from an integer.
FixPoint(String, Quantization) - Constructor for class ptolemy.math.FixPoint
Construct a FixPoint by converting the BigDecimal interpretation of a string to comply with a quantization specification.
FixPoint.Error - Class in ptolemy.math
An instance of this class is used preserve backwards interface compatibility.
FixPointFunctions - Class in ptolemy.data.expr
This class provides static functions for operating on Fixpoint numbers in the Ptolemy II expression language.
FixPointQuantization - Class in ptolemy.math
The FixPointQuantization class defines the mapping of numeric values with unlimited precision to the finite precision supported by arithmetic using the FixPoint class.
FixPointQuantization(String) - Constructor for class ptolemy.math.FixPointQuantization
Construct a FixPointQuantization object based on the provided string.
FixPointQuantization(Precision, Overflow, Rounding) - Constructor for class ptolemy.math.FixPointQuantization
Construct a FixPointQuantization with specified precision, overflow and rounding.
FixToDouble - Class in ptolemy.actor.lib.conversions
This actor converts a FixToken into a DoubleToken.
FixToDouble(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.conversions.FixToDouble
Construct an actor with the given container and name.
FixToFix - Class in ptolemy.actor.lib.conversions
This actor converts a FixToken into another FixToken with a specified precision.
FixToFix(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.conversions.FixToFix
Construct an actor with the given container and name.
FixToken - Class in ptolemy.data
A token that contains an instance of FixPoint.
FixToken() - Constructor for class ptolemy.data.FixToken
Construct a token with integer 0.
FixToken(FixPoint) - Constructor for class ptolemy.data.FixToken
Construct a FixToken with the supplied FixPoint value.
FixToken(double, Precision) - Constructor for class ptolemy.data.FixToken
Construct a FixToken representing the specified value with the specified precision.
FixToken(double, int, int) - Constructor for class ptolemy.data.FixToken
Construct a FixToken representing the specified value with the specified precision.
FixToken(String) - Constructor for class ptolemy.data.FixToken
Construct a FixToken from the specified string.
FixType - Class in ptolemy.data.type
This class represents the type of fix point token objects.
FixType() - Constructor for class ptolemy.data.type.FixType
Construct a new fix type, with no integer bits and no fractional bits.
FixType(Precision) - Constructor for class ptolemy.data.type.FixType
Construct a new fix type.
fixValue() - Method in class ptolemy.data.FixToken
Return the value of this token as a FixPoint.
fixValue() - Method in class ptolemy.data.IntToken
Return the value in the token as a fixpoint.
fixValue() - Method in class ptolemy.data.ScalarToken
Return the value of this token as a FixPoint.
fixValue() - Method in class ptolemy.data.ShortToken
Return the value in the token as a fixpoint.
fixValue() - Method in class ptolemy.graph.test.TestConstant
Do nothing.
fixValue() - Method in class ptolemy.graph.test.TestVariable
Disallow the value of this term to be set.
flavors - Variable in class org.ecoinformatics.seek.querybuilder.DBTableField
 
FLIP_HORIZONTAL - Static variable in class ptolemy.vergil.toolbox.RotateOrFlipPorts
Indicator to flip ports horizontally.
FLIP_VERTICAL - Static variable in class ptolemy.vergil.toolbox.RotateOrFlipPorts
Indicator to flip ports vertically.
FLOAT - Static variable in class org.ecoinformatics.seek.dataquery.DBTablesGenerator
 
FLOAT - Static variable in class org.kepler.objectmanager.data.DataType
 
FLOAT - Static variable in interface ptolemy.data.expr.MatrixParserConstants
RegularExpression Id.
FLOAT - Static variable in class ptolemy.data.type.BaseType
The float data type.
FloatArrayMath - Class in ptolemy.math
This class provides a library for mathematical operations on float arrays.
FloatArrayMath() - Constructor for class ptolemy.math.FloatArrayMath
 
FloatBinaryOperation - Interface in ptolemy.math
A operation taking two operands of type float, and producing a value of type float.
FloatMatrixMath - Class in ptolemy.math
This class provides a library for mathematical operations on matrices of floats.
FloatToken - Class in ptolemy.data
A token that contains a 32-bit signed mantissa, signed exponent single precision floating-point number (IEEE 754).
FloatToken() - Constructor for class ptolemy.data.FloatToken
Construct a FloatToken with value 0.0.
FloatToken(float) - Constructor for class ptolemy.data.FloatToken
Construct a FloatToken with the specified value.
FloatToken(String) - Constructor for class ptolemy.data.FloatToken
Construct a FloatToken from the specified string.
FloatUnaryOperation - Interface in ptolemy.math
A operation taking one argument of type float, and producing a value of type float.
floatValue() - Method in class ptolemy.data.FloatToken
Return the value in the token as a float.
floatValue() - Method in class ptolemy.data.ScalarToken
Return the value of this token as a float In this base class, we just throw an exception.
floatValue() - Method in class ptolemy.data.ShortToken
Return the value in the token as a float.
FLOOR - Static variable in class ptolemy.math.Rounding
Singleton implementing floor rounding strategy.
Flowable - Interface in ptolemy.kernel.util
An interface for objects that have one port that serves as an input and one that serves as an output.
FloydWarshallAllPairShortestPathStrategy - Class in ptolemy.graph.analysis.strategy
Computation of the all pair shortest path of a directed graph using the Floyd-Warshall algorithm.
FloydWarshallAllPairShortestPathStrategy(Graph, ToDoubleMapping) - Constructor for class ptolemy.graph.analysis.strategy.FloydWarshallAllPairShortestPathStrategy
Construct an AllPairShortestPathAnalyzer which works using the Floyd-Warshall strategy.
FloydWarshallCycleExistenceStrategy - Class in ptolemy.graph.analysis.strategy
Computation of cycle existence in directed graphs using an all pair shortest path algorithm based on the Floyd-Warshall algorithm.
FloydWarshallCycleExistenceStrategy(Graph) - Constructor for class ptolemy.graph.analysis.strategy.FloydWarshallCycleExistenceStrategy
Construct an instance of this analyzer for a given graph.
FloydWarshallNegativeLengthCycleStrategy - Class in ptolemy.graph.analysis.strategy
Analyzer to check if a given directed graph has a negative cycle using the Floyd-Warshall all pair shortest path algorithm.
FloydWarshallNegativeLengthCycleStrategy(Graph, ToDoubleMapping) - Constructor for class ptolemy.graph.analysis.strategy.FloydWarshallNegativeLengthCycleStrategy
Constructs negative cycle detection analyzer for a given graph and given edge values.
FloydWarshallStrategy - Class in ptolemy.graph.analysis.strategy
Base class for all the analysis based on a floyd-warshall like computation.
FloydWarshallStrategy(Graph) - Constructor for class ptolemy.graph.analysis.strategy.FloydWarshallStrategy
Construct an FloydWarshallStrategy.
FloydWarshallTransitiveClosureStrategy - Class in ptolemy.graph.analysis.strategy
Computation of transitive closure of a directed graph using the Floyd-Warshall algorithm described in: Thomas H.
FloydWarshallTransitiveClosureStrategy(Graph) - Constructor for class ptolemy.graph.analysis.strategy.FloydWarshallTransitiveClosureStrategy
Construct a transitive closure analysis for a given directed graph.
FloydWarshallZeroLengthCycleStrategy - Class in ptolemy.graph.analysis.strategy
Analyzer to check if a given directed graph has a zero cycle using the Floyd-Warshall all pair shortest path algorithm.
FloydWarshallZeroLengthCycleStrategy(Graph, ToDoubleMapping) - Constructor for class ptolemy.graph.analysis.strategy.FloydWarshallZeroLengthCycleStrategy
Constructs negative cycle detection analyzer for a given graph and given edge values.
flush() - Method in class org.kepler.scriptengine.java.MemoryJavaFileManager
 
flushAfterNumData - Variable in class org.kepler.data.datasource.dataturbine.DataTurbineWriter
The number of data point between writing data.
flushAfterSeconds - Variable in class org.kepler.data.datasource.dataturbine.DataTurbineWriter
The number of seconds between writing data.
flushCaptureBuffer(Object) - Static method in class ptolemy.media.javasound.LiveSound
Flush queued data from the capture buffer.
flushCaptureBuffer(Object) - Method in interface ptolemy.media.javasound.LiveSoundInterface
Flush queued data from the capture buffer.
flushCaptureBuffer(Object) - Method in class ptolemy.media.javasound.LiveSoundJavaSE
Flush queued data from the capture buffer.
flushPlaybackBuffer(Object) - Static method in class ptolemy.media.javasound.LiveSound
Flush queued data from the playback buffer.
flushPlaybackBuffer(Object) - Method in interface ptolemy.media.javasound.LiveSoundInterface
Flush queued data from the playback buffer.
flushPlaybackBuffer(Object) - Method in class ptolemy.media.javasound.LiveSoundJavaSE
Flush queued data from the playback buffer.
focusGained(FocusEvent) - Method in class ptolemy.gui.Query.QueryFocusListener
 
focusLost(FocusEvent) - Method in class ptolemy.gui.Query.QueryFocusListener
 
FolderEntityLibrary - Class in org.kepler.moml
A convenience class to determine the different types of EntityLibraries in the trees for assigning icons.
FolderEntityLibrary() - Constructor for class org.kepler.moml.FolderEntityLibrary
 
FolderEntityLibrary(Workspace) - Constructor for class org.kepler.moml.FolderEntityLibrary
 
FolderEntityLibrary(CompositeEntity, String) - Constructor for class org.kepler.moml.FolderEntityLibrary
 
FolderFileFilter() - Constructor for class ptolemy.vergil.basic.BasicGraphFrame.FolderFileFilter
 
folderName - Variable in class org.kepler.gis.actor.kml.KMLWriter
The name of the top level folder containing the features in the output KML file.
FolderPopup - Class in org.kepler.gui.popups
 
FolderPopup(TreePath, Component) - Constructor for class org.kepler.gui.popups.FolderPopup
 
followRedirects(URL) - Static method in class ptolemy.util.FileUtilities
Given a URL, if it starts with http, the follow up to 10 redirects.
FONT_SIZE - Static variable in class org.kepler.profiling.gui.ExecutionMonitorPanel
Execution table font size for cell and column header.
fontFamily - Variable in class ptolemy.vergil.basic.export.web.Title
The font family.
fontFamily - Variable in class ptolemy.vergil.kernel.attributes.AbstractTextAttribute
The font family.
forceCollect - Variable in class org.kepler.spark.mllib.SparkSQLQuery
Option to force SQL transfer immediately
forcedCleanup - Variable in class org.sdm.spa.actors.transport.FileCopierBase
 
forceRefilter() - Method in class org.kepler.tagging.TagCache
 
forClassName(String) - Static method in class ptolemy.data.type.BaseType
Return an instance of Type of that corresponds to tokens of a class with the given name, or null if none exists.
FOREIGNKEY - Static variable in interface org.kepler.objectmanager.data.db.Constraint
 
ForeignKey - Class in org.kepler.objectmanager.data.db
This class represents a foreignkey in table level
ForeignKey() - Constructor for class org.kepler.objectmanager.data.db.ForeignKey
Default constructor
foreignKeyNames() - Method in class org.kepler.util.sql.Table
Get the foreign key names.
FOREIGNKEYSTRING - Static variable in interface org.kepler.objectmanager.data.db.Constraint
 
format - Variable in class org.kepler.actor.io.ArrayOfRecordsWriter
Formatting string for numeric data.
format - Variable in class org.kepler.actor.Logger
The format of the logger.
format(List<?>) - Static method in class org.kepler.sms.Util
 
format - Variable in class org.sdm.spa.Timestamp
 
format - Variable in class ptolemy.media.Audio
Format code; 1 for 8-bit mu-law.
formatDateToISO8601(Date) - Static method in class org.kepler.util.WorkflowRunUtil
 
formatIdOutputPort - Variable in class org.kepler.data.datasource.dataone.DataOneActor
Output sensorNameOutputPort
FormatRenderer - Class in org.kepler.workflowrunmanager.gui
 
FormatRenderer(Format) - Constructor for class org.kepler.workflowrunmanager.gui.FormatRenderer
 
formatStringFromISO8601(String) - Static method in class org.kepler.util.WorkflowRunUtil
 
formatType - Variable in class org.kepler.ddp.actor.pattern.AtomicPatternActor
The name of the data format or a fully-qualified class name to parse the data.
formComplexArray(double[], double[]) - Static method in class ptolemy.math.ComplexArrayMath
Return a new array of Complex numbers using two arrays for the real and imaginary parts.
FormDebugPanel - Class in com.jgoodies.forms.debug
A panel that paints grid bounds if and only if the panel's layout manager is a FormLayout.
FormDebugPanel() - Constructor for class com.jgoodies.forms.debug.FormDebugPanel
Constructs a FormDebugPanel with all options turned off.
FormDebugPanel(FormLayout) - Constructor for class com.jgoodies.forms.debug.FormDebugPanel
Constructs a FormDebugPanel on the given FormLayout instance that paints the grid in the foreground and paints no diagonals.
FormDebugPanel(boolean, boolean) - Constructor for class com.jgoodies.forms.debug.FormDebugPanel
Constructs a FormDebugPanel on the given FormLayout using the specified settings that are otherwise turned off.
FormDebugPanel(FormLayout, boolean, boolean) - Constructor for class com.jgoodies.forms.debug.FormDebugPanel
Constructs a FormDebugPanel on the given FormLayout using the specified settings that are otherwise turned off.
FormDebugPanel - Class in org.mlc.swing.layout
[Taken from the FormLayout codebase.
FormDebugPanel() - Constructor for class org.mlc.swing.layout.FormDebugPanel
Constructs a FormDebugPanel with all options turned off.
FormDebugPanel(FormLayout) - Constructor for class org.mlc.swing.layout.FormDebugPanel
Constructs a FormDebugPanel on the given FormLayout instance that paints the grid in the foreground and paints no diagonals.
FormDebugPanel(boolean, boolean) - Constructor for class org.mlc.swing.layout.FormDebugPanel
Constructs a FormDebugPanel on the given FormLayout using the specified settings that are otherwise turned off.
FormDebugPanel(FormLayout, boolean, boolean) - Constructor for class org.mlc.swing.layout.FormDebugPanel
Constructs a FormDebugPanel on the given FormLayout using the specified settings that are otherwise turned off.
FormDebugUtils - Class in com.jgoodies.forms.debug
Provides static methods that help you understand and fix layout problems when using the FormLayout.
FormEditor - Class in org.mlc.swing.layout
This is the main panel that is used in LayoutFrame serving as the user interface for the builder.
FormEditor(MultiContainerFrame, ContainerLayout, Container) - Constructor for class org.mlc.swing.layout.FormEditor
 
FormFactory - Class in com.jgoodies.forms.factories
A factory that creates instances of FormLayout for frequently used form layouts.
FormLayout - Class in com.jgoodies.forms.layout
FormLayout is a powerful, flexible and precise general purpose layout manager.
FormLayout() - Constructor for class com.jgoodies.forms.layout.FormLayout
Constructs an empty FormLayout.
FormLayout(String) - Constructor for class com.jgoodies.forms.layout.FormLayout
Constructs a FormLayout using the given encoded column specifications.
FormLayout(String, String) - Constructor for class com.jgoodies.forms.layout.FormLayout
Constructs a FormLayout using the given encoded column and row specifications.
FormLayout(ColumnSpec[], RowSpec[]) - Constructor for class com.jgoodies.forms.layout.FormLayout
Constructs a FormLayout using the given column and row specifications.
FormLayout.LayoutInfo - Class in com.jgoodies.forms.layout
Stores column and row origins.
FormSpec - Class in com.jgoodies.forms.layout
An abstract class that specifies columns and rows in FormLayout by their default alignment, start size and resizing behavior.
FormSpec(FormSpec.DefaultAlignment, Size, double) - Constructor for class com.jgoodies.forms.layout.FormSpec
Constructs a FormSpec for the given default alignment, size, and resize weight.
FormSpec(FormSpec.DefaultAlignment, String) - Constructor for class com.jgoodies.forms.layout.FormSpec
Constructs a FormSpec from the specified encoded description.
FormSpec.DefaultAlignment - Class in com.jgoodies.forms.layout
An ordinal-based serializable typesafe enumeration for the column and row default alignment types.
forName(String) - Static method in class ptolemy.data.type.BaseType
Return an instance of this class with the specified name, or null if none exists.
forName(String) - Static method in class ptolemy.math.Overflow
Return an instance of this class with the specified name.
forName(String) - Static method in class ptolemy.math.Rounding
Return an instance of this class with the specified name.
forwardParentDir - Variable in class org.srb.SProxy
Specify whether to output the parent directories of removed files/directories or have a sink actor.
forwards - Variable in class ptolemy.actor.lib.ArrayLevelCrossing
The direction to search from the start.
found - Variable in class org.kepler.actor.MappedLogger
The boolean return value.
foundInCache - Variable in class org.kepler.objectmanager.cache.DataCacheGetActor
 
foundResultsOutput - Variable in class ptolemy.actor.lib.test.LoopTest2
 
foundUnknown() - Method in class ptolemy.domains.modal.kernel.FSMActor
Return true if the most recent call to enabledTransition() or chooseTransition() found guard expressions or output value expressions that could not be evaluated due to unknown inputs.
fourVertices - Static variable in class org.geon.TernaryDiagram
 
Fraction - Class in ptolemy.math
A class for representing fractions.
Fraction() - Constructor for class ptolemy.math.Fraction
Create a new fraction with the value zero (0/1).
Fraction(int) - Constructor for class ptolemy.math.Fraction
Create a new fraction with the value i/1.
Fraction(int, int) - Constructor for class ptolemy.math.Fraction
Create a new fraction in lowest terms with the value Numerator/Denominator.
Fraction(Fraction) - Constructor for class ptolemy.math.Fraction
Create a new fraction with the same value as the given fraction.
FractionArrayMath - Class in ptolemy.math
A library for mathematical operations on Fraction arrays.
FractionArrayMath() - Constructor for class ptolemy.math.FractionArrayMath
 
FractionMatrixMath - Class in ptolemy.math
A library for mathematical operations on matrices of Fractions.
frame - Variable in class org.sdm.spa.gui.DoubleShellTAPTableau
The associated frame.
frame - Variable in class ptolemy.actor.gui.exec.ExecShellTableau
The frame in which text is written.
frame - Variable in class ptolemy.actor.gui.ExpressionShellTableau
The associated frame.
frame - Variable in class ptolemy.actor.lib.gui.InteractiveDialog.DialogTableau
The frame.
frame - Variable in class ptolemy.actor.lib.gui.PlotterBaseJavaSE.PlotWindowTableau
The frame.
freedom - Variable in class ptolemy.actor.lib.colt.ColtChiSquare
freedom.
freedom - Variable in class ptolemy.actor.lib.colt.ColtStudentT
freedom.
freedom - Variable in class ptolemy.actor.lib.colt.ColtVonMises
freedom.
freeMemory() - Static method in class ptolemy.data.expr.UtilityFunctions
Return the approximate number of bytes available for future object allocation.
FreeVariableModelAnalysis - Class in ptolemy.actor.util
An analysis that traverses a model to determine all the free variables in a hierarchical model.
FreeVariableModelAnalysis(Entity) - Constructor for class ptolemy.actor.util.FreeVariableModelAnalysis
Analyze the given model to return a set of names which must be defined externally for the model to be completely specified.
frequencySec - Variable in class org.kepler.actor.io.SshDirectoryList_v1_1
Specifying whether this actor should loop inside and check for files regularly and stop only when a file that matches the stopmask is found.
FROM - Static variable in class org.ecoinformatics.seek.dataquery.DBTablesGenerator
 
from - Variable in class org.kepler.modulemanager.gui.patch.ModulePair
 
fromAddress - Variable in class org.sdm.spa.Email
Email address that the email will be sent from.
fromMatrixToArray(Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new array that is filled with the contents of the matrix.
fromMatrixToArray(Complex[][], int, int) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new array that is filled with the contents of the matrix.
fromMatrixToArray(double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new array that is filled with the contents of the matrix.
fromMatrixToArray(double[][], int, int) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new array that is filled with the contents of the matrix.
fromMatrixToArray(float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Return a new array that is filled with the contents of the matrix.
fromMatrixToArray(float[][], int, int) - Static method in class ptolemy.math.FloatMatrixMath
Return a new array that is filled with the contents of the matrix.
fromMatrixToArray(Fraction[][]) - Static method in class ptolemy.math.FractionMatrixMath
Return a new array that is filled with the contents of the matrix.
fromMatrixToArray(Fraction[][], int, int) - Static method in class ptolemy.math.FractionMatrixMath
Return a new array that is filled with the contents of the matrix.
fromMatrixToArray(int[][]) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new array that is filled with the contents of the matrix.
fromMatrixToArray(int[][], int, int) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new array that is filled with the contents of the matrix.
fromMatrixToArray(long[][]) - Static method in class ptolemy.math.LongMatrixMath
Return a new array that is filled with the contents of the matrix.
fromMatrixToArray(long[][], int, int) - Static method in class ptolemy.math.LongMatrixMath
Return a new array that is filled with the contents of the matrix.
fromToken(Token) - Method in class org.kepler.gis.data.WebViewConverter
Convert from a token to a (geo)json string.
fromToken(Token) - Method in interface org.kepler.webview.data.Converter
 
FS_NAME - Static variable in class org.kepler.hadoop.actor.HDFSLoader
 
FS_NAME - Static variable in class org.kepler.hadoop.actor.HDFSUnLoader
 
FS_NAME - Static variable in class org.kepler.hadoop.actor.HDFSWriter
 
FS_NAME - Static variable in class org.kepler.hadoop.director.HadoopEngine
 
FSMActor - Class in ptolemy.domains.modal.kernel
An FSMActor contains a set of states and transitions.
FSMActor() - Constructor for class ptolemy.domains.modal.kernel.FSMActor
Construct an FSMActor in the default workspace with an empty string as its name.
FSMActor(CompositeEntity, String) - Constructor for class ptolemy.domains.modal.kernel.FSMActor
Create an FSMActor in the specified container with the specified name.
FSMActor(Workspace) - Constructor for class ptolemy.domains.modal.kernel.FSMActor
Construct an FSMActor in the specified workspace with an empty string as its name.
FSMActor.PortScope - Class in ptolemy.domains.modal.kernel
This class implements a scope, which is used to evaluate the parsed expressions.
FSMCausalityInterface - Class in ptolemy.domains.modal.kernel
This class infers the causality interface of an FSMActor by checking the guards and actions of the transitions.
FSMCausalityInterface(Actor, Dependency) - Constructor for class ptolemy.domains.modal.kernel.FSMCausalityInterface
Construct a causality interface for the specified actor.
FSMDirector - Class in ptolemy.domains.modal.kernel
An FSMDirector governs the execution of a modal model.
FSMDirector() - Constructor for class ptolemy.domains.modal.kernel.FSMDirector
Construct a director in the default workspace with an empty string as its name.
FSMDirector(Workspace) - Constructor for class ptolemy.domains.modal.kernel.FSMDirector
Construct a director in the workspace with an empty name.
FSMDirector(CompositeEntity, String) - Constructor for class ptolemy.domains.modal.kernel.FSMDirector
Construct a director in the given container with the given name.
FSMGraphController - Class in ptolemy.vergil.modal
A Graph Controller for FSM models.
FSMGraphController() - Constructor for class ptolemy.vergil.modal.FSMGraphController
Create a new basic controller with default terminal and edge interactors.
FSMGraphController.LinkCreator - Class in ptolemy.vergil.modal
An interactor that interactively drags edges from one terminal to another.
FSMGraphController.NewStateAction - Class in ptolemy.vergil.modal
An action to create a new state.
FSMGraphFrame - Class in ptolemy.vergil.modal
This is a graph editor frame for ptolemy FSM models.
FSMGraphFrame(CompositeEntity, Tableau) - Constructor for class ptolemy.vergil.modal.FSMGraphFrame
Construct a frame associated with the specified FSM model.
FSMGraphFrame(CompositeEntity, Tableau, LibraryAttribute) - Constructor for class ptolemy.vergil.modal.FSMGraphFrame
Construct a frame associated with the specified FSM model.
FSMGraphFrame.DebugMenuListener - Class in ptolemy.vergil.modal
Listener for debug menu commands.
FSMGraphModel - Class in ptolemy.vergil.modal
A graph model for graphically manipulating ptolemy FSM models.
FSMGraphModel(CompositeEntity) - Constructor for class ptolemy.vergil.modal.FSMGraphModel
Construct a new graph model whose root is the given composite entity.
FSMGraphModel.ArcModel - Class in ptolemy.vergil.modal
The model for arcs between states.
FSMGraphModel.PortModel - Class in ptolemy.vergil.modal
The model for external ports.
FSMGraphModel.StateModel - Class in ptolemy.vergil.modal
The model for an icon that represent states.
FSMGraphTableau - Class in ptolemy.vergil.modal
An editor tableau for finite state machines.
FSMGraphTableau(PtolemyEffigy, String) - Constructor for class ptolemy.vergil.modal.FSMGraphTableau
Create a new FSM editor tableau with the specified container and name, with no default library.
FSMGraphTableau(PtolemyEffigy, String, LibraryAttribute) - Constructor for class ptolemy.vergil.modal.FSMGraphTableau
Create a new FSM editor tableau with the specified container, name, and default library.
FSMGraphTableau.Factory - Class in ptolemy.vergil.modal
A factory that creates graph editing tableaux for Ptolemy models.
FSMReceiver - Class in ptolemy.domains.modal.kernel
A receiver with capacity one for which one can explicitly set the status.
FSMReceiver() - Constructor for class ptolemy.domains.modal.kernel.FSMReceiver
Construct an empty receiver with no container.
FSMReceiver(IOPort) - Constructor for class ptolemy.domains.modal.kernel.FSMReceiver
Construct an empty receiver with the specified container.
FSMTransitionParameter - Class in ptolemy.domains.modal.kernel
A parameter that contains FSM transition attributes.
FSMTransitionParameter(NamedObj, String) - Constructor for class ptolemy.domains.modal.kernel.FSMTransitionParameter
Construct an attribute with the given name contained by the specified entity.
fsmTransitionParameterName - Variable in class ptolemy.domains.modal.kernel.Transition
The name of the transition, which defaults to the name of the transition followed by the string "Parameter".
FSMViewerGraphController - Class in ptolemy.vergil.modal
A graph controller for the Ptolemy II finite-state machine viewer.
FSMViewerGraphController() - Constructor for class ptolemy.vergil.modal.FSMViewerGraphController
Create a new controller with default port, state, and transition controllers.
FTPClient - Class in org.geon
This actor serves as an interface for FTP operations (currently only upload and download are supported).
FTPClient(CompositeEntity, String) - Constructor for class org.geon.FTPClient
 
fuel - Variable in class org.kepler.gis.actor.landscape.CreateLandscape
Fuel models raster (required).
FULL - Static variable in interface ptolemy.kernel.util.Settable
Indicator that a user interface should make an instance visible.
FULL - Static variable in class ptolemy.vergil.kernel.AttributeController
Indicator to give full access to the attribute.
FullApplication - Class in ptolemy.actor.gui.jnlp
A wrapper class that calls eventually calls ptolemy.vergil.VergilApplication for use with Java Network Launching Protocol (JNLP) aka Web Start.
FullApplication() - Constructor for class ptolemy.actor.gui.jnlp.FullApplication
 
FULLNAME - Static variable in class ptolemy.kernel.util.NamedObj
Indicate that the description(int) method should include the full name.
fullScreen() - Method in class org.kepler.gui.KeplerGraphFrame
Go to full screen.
fullScreen() - Method in class ptolemy.vergil.basic.ExtendedGraphFrame
Go to full screen.
FullScreenAction(String) - Constructor for class ptolemy.vergil.basic.ExtendedGraphFrame.FullScreenAction
Construct a full screen action.
FullTreeModel - Class in ptolemy.vergil.tree
A tree model for Ptolemy II models.
FullTreeModel(CompositeEntity) - Constructor for class ptolemy.vergil.tree.FullTreeModel
Create a new tree model with the specified root.
funcIf() - Method in class ptolemy.data.expr.PtParser
 
function - Variable in class ptolemy.actor.lib.conversions.Round
The rounding strategy to use.
function - Variable in class ptolemy.actor.lib.hoc.ApplyFunction
The input port for function definition.
function - Variable in class ptolemy.actor.lib.hoc.ApplyFunctionOverSequence
Deprecated.
The input port for function definition.
function - Variable in class ptolemy.actor.lib.hoc.MobileFunction
Deprecated.
The input port for function definition.
function - Variable in class ptolemy.actor.lib.logic.LogicFunction
Deprecated.
The function to compute.
function - Variable in class ptolemy.actor.lib.MathFunction
Deprecated.
The function to compute.
function - Variable in class ptolemy.actor.lib.string.StringCompare
The comparison function to be performed.
function - Variable in class ptolemy.actor.lib.string.StringFunction
Parameter that stores the string function to be performed on the input string.
function - Variable in class ptolemy.actor.lib.TrigFunction
The function to compute.
function - Variable in class ptolemy.actor.lib.UnaryMathFunction
The function to compute.
FUNCTION - Static variable in class ptolemy.data.expr.CachedMethod
Indicator of a function (vs. method).
function() - Method in class ptolemy.data.expr.PtParser
 
FUNCTION - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
Function - Interface in ptolemy.data
The interface for functions contained by function tokens.
functionDefinition() - Method in class ptolemy.data.expr.PtParser
 
FunctionToken - Class in ptolemy.data
A token that contains a function.
FunctionToken(Function, FunctionType) - Constructor for class ptolemy.data.FunctionToken
Create a new FunctionToken that applies the given function.
FunctionToken(String) - Constructor for class ptolemy.data.FunctionToken
Create a new FunctionToken from the given string.
FunctionType - Class in ptolemy.data.type
A class representing the type of a FunctionToken.
FunctionType(Type[], Type) - Constructor for class ptolemy.data.type.FunctionType
Construct a new FunctionType with the specified argument types and the given return type.
FutureValue<V> - Class in org.ptolemy.commons
A Future implementation that just waits until its result value/exception is available.
FutureValue() - Constructor for class org.ptolemy.commons.FutureValue
Creates a future that will be waiting for its result.
FutureValue(V) - Constructor for class org.ptolemy.commons.FutureValue
Creates a future that is immediately set with its result value.
FuzzyDoubleComparator - Class in ptolemy.actor.util
Deprecated.
As Ptolemy II 4.1, use GeneralComparator instead.
FuzzyDoubleComparator() - Constructor for class ptolemy.actor.util.FuzzyDoubleComparator
Deprecated.
Construct a FuzzyDoubleComparator.
FuzzyDoubleComparator(double) - Constructor for class ptolemy.actor.util.FuzzyDoubleComparator
Deprecated.
Construct a FuzzyDoubleComparator with the given threshold.

G

GAMAAuthenticationService - Class in org.kepler.authentication
AuthenticationService is responsible for contact the GAMA service and get back the credential for the user
GAMAAuthenticationService() - Constructor for class org.kepler.authentication.GAMAAuthenticationService
 
GAMALoginGUI - Class in org.kepler.authentication.gui
LoginGUI pops up the login dialog to let user login, retrieves credential from GAMA server, and stores the credential into ProxyRepository.
GAMALoginGUI() - Constructor for class org.kepler.authentication.gui.GAMALoginGUI
The constructor is used to build all the display components
gamma - Variable in class ptolemy.actor.lib.colt.ColtBreitWigner
gamma.
gamma - Variable in class ptolemy.domains.modal.kernel.Transition
Attribute giving the orientation of a self-loop.
GAP - Static variable in class org.ecoinformatics.seek.ecogrid.EcogridPreferencesTab
Description of the Field
GarpAlgorithm - Class in org.ecoinformatics.seek.garp
GARP is a computer program for predicting species locations based on various spatial data sets of environment variables and known species locations.
GarpAlgorithm(CompositeEntity, String) - Constructor for class org.ecoinformatics.seek.garp.GarpAlgorithm
GarpAlgorithm Actor
GarpPrediction - Class in org.ecoinformatics.seek.garp
GARP is a computer program for predicting species locations based on various spatial data sets of environment variables and known species locations.
GarpPrediction(CompositeEntity, String) - Constructor for class org.ecoinformatics.seek.garp.GarpPrediction
GarpPrediction Actor
GarpPresampleLayers - Class in org.ecoinformatics.seek.garp
GARP is a computer program for predicting species locations based on various spatial data sets of environment variables and known species locations.
GarpPresampleLayers(CompositeEntity, String) - Constructor for class org.ecoinformatics.seek.garp.GarpPresampleLayers
Garp presample layer actor
GARPSummary - Class in org.ecoinformatics.seek.gis.java_gis
This actor examinesof the values in individual pixels in an ascii grid file and summarizes those values.
GARPSummary(CompositeEntity, String) - Constructor for class org.ecoinformatics.seek.gis.java_gis.GARPSummary
constructor
Gaussian - Class in ptolemy.actor.lib
Produce a random sequence with a Gaussian distribution.
Gaussian(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Gaussian
Construct an actor with the given container and name.
gaussian(double, double) - Static method in class ptolemy.data.expr.UtilityFunctions
Return a Gaussian random number.
gaussian(double, double, int) - Static method in class ptolemy.data.expr.UtilityFunctions
Return an array of Gaussian random numbers.
gaussian(double, double, int, int) - Static method in class ptolemy.data.expr.UtilityFunctions
Return a matrix of Gaussian random numbers.
GaussianSampleGenerator(double, double) - Constructor for class ptolemy.math.SignalProcessing.GaussianSampleGenerator
Construct a GaussianSampleGenerator.
gcd(int, int) - Static method in class ptolemy.math.ExtendedMath
Implement Euclid's method for finding the Greatest Common Divisor (GCD) of two numbers.
GDALTranslateActor - Class in org.ecoinformatics.seek.gis.gdal
This actor provides translation capabilities provided through the GDAL GIS library.
GDALTranslateActor(CompositeEntity, String) - Constructor for class org.ecoinformatics.seek.gis.gdal.GDALTranslateActor
Constructor
GDALWarpActor - Class in org.ecoinformatics.seek.gis.gdal
This actor provides projection capabilities provided through the GDAL GIS library.
GDALWarpActor(CompositeEntity, String) - Constructor for class org.ecoinformatics.seek.gis.gdal.GDALWarpActor
Constructor
Gem5Wrapper - Class in ptolemy.actor.lib.gem5
An actor that interacts with gem5 architectural simulator.
Gem5Wrapper(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.gem5.Gem5Wrapper
Construct an actor with the given container and name.
Gem5Wrapper.SortByCommandTime - Class in ptolemy.actor.lib.gem5
Sort by the difference between the command times.
geneID - Variable in class org.sdm.spa.actors.piw.viz.Sequence
 
GENERAL - Static variable in class ptolemy.data.type.BaseType
The general data type: The top of the lattice.
GENERAL - Static variable in class ptolemy.math.Overflow
Singleton implementing Grow overflow strategy.
GENERAL - Static variable in class ptolemy.math.Rounding
Singleton implementing general rounding strategy.
GeneralComparator - Class in ptolemy.actor.util
This class compares two comparable objects, object_1 and object_2, by calling compare(object_1, object_2).
GeneralComparator() - Constructor for class ptolemy.actor.util.GeneralComparator
 
GeneralConfigurationWriter - Class in org.kepler.configuration
A class that implements the ConfigurationWriter interface for the commons framework.
GeneralConfigurationWriter() - Constructor for class org.kepler.configuration.GeneralConfigurationWriter
constructor
GeneralToken - Class in ptolemy.data.expr
This is a token that reports its type as "general."
GeneralToken() - Constructor for class ptolemy.data.expr.GeneralToken
 
generate(Workspace, LibIndex) - Method in class org.kepler.objectmanager.library.LibraryGenerator
 
generateActorIndex(String, String, String) - Static method in class ptolemy.moml.filter.ActorIndex
Generate the index files.
generateAndSetWhereText() - Method in class org.ecoinformatics.seek.querybuilder.DBWherePanel
Generates a textual representation of the "where" clause and displays it
generateAssignmentMap(String) - Method in class ptolemy.data.expr.PtParser
Generates a parse tree from the given String.
generateBartlettWindow(int) - Static method in class ptolemy.math.SignalProcessing
Return a new array that is filled with samples of a Bartlett window of a specified length.
generateBlackmanHarrisWindow(int) - Static method in class ptolemy.math.SignalProcessing
Return a new array that is filled with samples of a Blackman Harris window of a specified length.
generateBlackmanWindow(int) - Static method in class ptolemy.math.SignalProcessing
Return a new array that is filled with samples of a Blackman window of a specified length.
generateCode(ASTPtRootNode) - Method in class ptolemy.data.expr.CParseTreeCodeGenerator
Generate code for a node.
generateCodeBook(double[]) - Method in class ptolemy.actor.lib.comm.HuffmanBasic
Generate the Huffman code book given the probability mass function.
GenerateCopyrights - Class in ptolemy.actor.gui
Generate an HTML file that contains links to the appropriate copyrights for entities in the configuration.
GenerateCopyrights() - Constructor for class ptolemy.actor.gui.GenerateCopyrights
 
generateDependencyString(Vector<String>) - Static method in class org.kepler.kar.ModuleDependencyUtil
Return a delimited string containing the given list of module dependencies.
generateDocumentationForInstance(DarwinCoreDataSource) - Static method in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreDataSource
This method allows default documentation to be added to the actor specified in the parameter.
generateDocumentationForInstance(Eml200DataSource) - Static method in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource
This method allows default documentation to be added to the actor specified in the parameter.
generateFor(ReportLayout) - Method in class org.kepler.reporting.rio.fop.ReportXMLReader
Generates SAX events for a Report object.
generateFor(Item) - Method in class org.kepler.reporting.rio.fop.ReportXMLReader
Generates SAX events for a ProjectMember object.
generateFor(ItemProperties) - Method in class org.kepler.reporting.rio.fop.ReportXMLReader
 
generateFor(ItemLabel) - Method in class org.kepler.reporting.rio.fop.ReportXMLReader
 
generateFor(ItemValue) - Method in class org.kepler.reporting.rio.fop.ReportXMLReader
Generates SAX events for a ProjectMember object.
generateGaussianCurve(double, double, int) - Static method in class ptolemy.math.SignalProcessing
Return an array with samples the Gaussian curve (the "bell curve").
generateHammingWindow(int) - Static method in class ptolemy.math.SignalProcessing
Return a new array that is filled with samples of a Hamming window of a specified length.
generateHanningWindow(int) - Static method in class ptolemy.math.SignalProcessing
Return a new array that is filled with samples of a Hanning window of a specified length.
generateHTML(Configuration) - Static method in class ptolemy.actor.gui.GenerateCopyrights
Generate HTML about the copyrights for classes that might be present in the configuration.
generateInputMethods() - Method in class org.sdm.spa.SoaplabServiceClient
To generate all the input set_ operations belonging to the derived web service.INPUT_NAME gives the actual operation name of set_
generateKAR(TableauFrame, String) - Method in class org.kepler.kar.KARBuilder
 
generateLinks(String, String, Configuration) - Static method in class ptolemy.actor.gui.HTMLAbout
Call Configuration.openModel() on relative URLs that match a regexp.
generateMessage(Nameable, Nameable, Throwable, String) - Static method in exception ptolemy.kernel.util.KernelException
Generate a properly formatted exception message.
generateMessage(Collection, Throwable, String) - Static method in exception ptolemy.kernel.util.KernelException
Generate a properly formatted exception message where the origin of the error is a collection.
generateMessage(String, Throwable, String) - Static method in exception ptolemy.kernel.util.KernelException
Generate a properly formatted detail message.
generateOutputMethods() - Method in class org.sdm.spa.SoaplabServiceClient
To generate all the output get_ operations belonging to the derived web service.INPUT_NAME gives the actual operation name of get_
generateParameters(NamedObj) - Method in class org.kepler.provenance.opm.OpenProvenanceModelXML
Deprecated.
Add Parameters for ProvenanceListener.
generateParameters(NamedObj) - Method in class org.kepler.provenance.prov.ProvRecording
Add Parameters for ProvenanceListener.
generateParameters(NamedObj) - Method in class org.kepler.provenance.Recording
Add Parameters to ProvenanceListener configuration GUI.
generateParameters(NamedObj) - Method in class org.kepler.provenance.sql.SQLRecording
Add Parameters for ProvenanceListener.
generateParameters(NamedObj) - Method in class org.kepler.provenance.sql.SQLRecordingV8
Add Parameters for ProvenanceRecorder.
generateParameters(NamedObj) - Method in class org.kepler.provenance.TextFileRecording
Add Parameters for ProvenanceListener.
generateParameters(NamedObj) - Method in class org.kepler.provenance.XMLRecording
Deprecated.
Add Parameters for ProvenanceListener.
generateParseException() - Method in class ptolemy.data.expr.MatrixParser
Generate ParseException.
generateParseException() - Method in class ptolemy.data.expr.PtParser
Generate ParseException.
generateParseException() - Method in class ptolemy.moml.unit.UParser
Generate ParseException.
generateParseTree(String) - Method in class ptolemy.data.expr.PtParser
Generates a parse tree from the given String.
generatePolynomialCurve(double[], double, double, int) - Static method in class ptolemy.math.SignalProcessing
Return an array with samples a polynomial curve.
generatePrimaryCopyrightHTML(Configuration) - Static method in class ptolemy.actor.gui.GenerateCopyrights
Generate the primary copyright.
generateRaisedCosinePulse(double, double, int) - Static method in class ptolemy.math.SignalProcessing
Return an array containing a symmetric raised-cosine pulse.
generateRectangularWindow(int) - Static method in class ptolemy.math.SignalProcessing
Return a new array that is filled with samples of a rectangular window of a specified length.
generateSimpleAssignmentParseTree(String) - Method in class ptolemy.data.expr.PtParser
Generates a parse tree from the given String, which may optionally contain an assignment.
generateSqrtRaisedCosinePulse(double, double, int) - Static method in class ptolemy.math.SignalProcessing
Return an array containing a symmetric raised-cosine pulse.
generateStringParseTree(String) - Method in class ptolemy.data.expr.PtParser
Generates a parse tree from the given String, which is interpreted in "String Mode" instead of as an operator expression.
generateUndoEntry() - Method in class ptolemy.moml.UndoContext
Generate the undo entry by processing children entries and the closing undo MoML.
generateValues(Queryable, KeplerLSID, int, TableauFrame) - Method in class org.kepler.reporting.rio.DynamicReportItem
Retrieves values for a given execution
generateValues(Queryable, KeplerLSID, int, TableauFrame) - Method in class org.kepler.reporting.rio.Item
 
generateValues(Queryable, KeplerLSID, int, TableauFrame) - Method in class org.kepler.reporting.rio.StaticReportItem
 
generateValues(Queryable, KeplerLSID, int) - Method in class org.kepler.reporting.rio.StaticReportItemHR
 
generateValues(Queryable, KeplerLSID, int) - Method in class org.kepler.reporting.rio.StaticReportItemImage
 
generateValues(Queryable, KeplerLSID, int) - Method in class org.kepler.reporting.rio.StaticReportItemLabel
 
generateValues(Queryable, KeplerLSID, int) - Method in class org.kepler.reporting.rio.StaticReportItemText
 
generateWhereSQL(boolean) - Method in class org.ecoinformatics.seek.querybuilder.DBWherePanel
Generates a textual representation of the "where" clause
GenerateWindFile - Class in org.kepler.gis.actor.farsite
Generate a wind file for FARSITE.
GenerateWindFile(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.farsite.GenerateWindFile
 
generateWindow(int, int) - Static method in class ptolemy.math.SignalProcessing
Return a new array that is filled with samples of a window of a specified length and type.
generatorClass - Variable in class ptolemy.actor.lib.colt.ColtRandomSource
The low-level random number generator (RNG) class name.
GenericFileCopier - Class in org.sdm.spa.actors.transport
Copy files between local and remote machine or between two remote machines, using scp, sftp, bbcp or srmlite protocol.
GenericFileCopier(CompositeEntity, String) - Constructor for class org.sdm.spa.actors.transport.GenericFileCopier
Construct an FileCopierBetweenRemoteMachines actor with the given container and name.
GenericJobLauncher - Class in org.kepler.actor.job
A generic job launcher actor that can launch a job using PBS, NCCS, Condor, Loadleveler, SGE, Moab or LSF, and wait till a user specified status.
GenericJobLauncher(CompositeEntity, String) - Constructor for class org.kepler.actor.job.GenericJobLauncher
 
GenericJobReconnect - Class in org.kepler.actor.job
A generic job launcher actor that can launch a job using PBS, NCCS, Condor, Loadleveler, or SGE, and wait till a user specified status.
GenericJobReconnect(CompositeEntity, String) - Constructor for class org.kepler.actor.job.GenericJobReconnect
 
geometricMean(double[]) - Static method in class ptolemy.math.DoubleArrayStat
Return the geometric mean of the elements in the array.
GeomodelGlue - Class in com.numericsolutions.geomodeltools
 
GeomodelGlue() - Constructor for class com.numericsolutions.geomodeltools.GeomodelGlue
 
GEONDatabaseResource - Class in org.kepler.dataproxy.datasource.geon
An actor that serves as a proxy to query a specific database (defined by geon id).
GEONDatabaseResource(CompositeEntity, String) - Constructor for class org.kepler.dataproxy.datasource.geon.GEONDatabaseResource
Construct an actor with the given container and name.
GEONShpResource - Class in org.kepler.dataproxy.datasource.geon
A GEON shapefile resource.
GEONShpResource(CompositeEntity, String) - Constructor for class org.kepler.dataproxy.datasource.geon.GEONShpResource
Construct an actor with the given container and name.
GeonXMLUtil - Class in org.geon
 
GeonXMLUtil() - Constructor for class org.geon.GeonXMLUtil
 
get(String) - Method in class org.geon.RockSample
 
get(int) - Method in class org.json.JSONArray
Get the object value associated with an index.
get(String) - Method in class org.json.JSONObject
Get the value object associated with a key.
get(String) - Method in class org.kepler.cloudsharing.util.WorkflowResults
Get the value for a key.
get() - Static method in class org.kepler.CommandLineArgs
 
get(String) - Static method in class org.kepler.CommandLineArgument
Get the CommandLineArgument for a specific flag.
get(String) - Static method in class org.kepler.job.JobFactory
Return an existing job.
get(String) - Static method in class org.kepler.job.JobManagerFactory
return an existing job manager
get(String, String) - Static method in class org.kepler.job.JobManagerFactory
return an existing job manager
get(String, String, String) - Static method in class org.kepler.job.JobManagerFactory
return an existing job manager OR create one now
get(JFrame) - Method in class org.kepler.kar.KARManager
 
get() - Method in class org.kepler.objectmanager.cache.CacheNamedObj
 
get(String, boolean) - Method in class org.kepler.objectmanager.repository.EcogridRepository
return an object using a ecogrid docid identifier
get(KeplerLSID, boolean) - Method in class org.kepler.objectmanager.repository.EcogridRepository
return the object from the repository that has the given lsid
get(KeplerLSID, boolean) - Method in class org.kepler.objectmanager.repository.Repository
return the object from the repository that has the given lsid
get(String, boolean) - Method in class org.kepler.objectmanager.repository.Repository
get method with a string id
get() - Method in class org.ptolemy.commons.FutureValue
 
get(long, TimeUnit) - Method in class org.ptolemy.commons.FutureValue
 
get() - Method in class ptolemy.actor.AbstractReceiver
Get a token from this receiver.
get() - Method in class ptolemy.actor.IntermediateReceiver
Delegate to the internal receiver and return whatever it returns.
get(int) - Method in class ptolemy.actor.IOPort
Get a token from the specified channel.
get(int, int) - Method in class ptolemy.actor.IOPort
Get an array of tokens from the specified channel.
get() - Method in class ptolemy.actor.Mailbox
Get the contained Token.
get() - Method in class ptolemy.actor.process.MailboxBoundaryReceiver
Get a token from this receiver.
get() - Method in class ptolemy.actor.QueueReceiver
Remove the first token (the oldest one) from the receiver and return it.
get(int) - Method in class ptolemy.actor.QueueReceiver
Return a token in the receiver or its history.
get() - Method in interface ptolemy.actor.Receiver
Get a token from this receiver.
get() - Method in class ptolemy.actor.sched.FixedPointReceiver
Return the contained token.
get(int) - Method in class ptolemy.actor.sched.Schedule
Return the element at the specified position in the list.
get(int) - Method in class ptolemy.actor.SubscriptionAggregatorPort
Get a token from the specified channel.
get(int, int) - Method in class ptolemy.actor.SubscriptionAggregatorPort
Get an array of tokens from the specified channel.
get() - Method in class ptolemy.actor.test.TestAbstractReceiver
Get a token from this receiver.
get() - Method in class ptolemy.actor.util.CalendarQueue
Return entry that is at the head of the queue (i.e. the one that will be obtained by the next take()).
get(int) - Method in class ptolemy.actor.util.FIFOQueue
Return an object in the queue or history.
get(String) - Static method in class ptolemy.data.expr.Constants
Look up the value of the constant with the given name.
get(String) - Method in class ptolemy.data.expr.ExplicitScope
Look up and return the value with the specified name in the scope.
get(String) - Method in class ptolemy.data.expr.NamedConstantsScope
Look up and return the value with the specified name in the scope.
get(String) - Method in class ptolemy.data.expr.NestedScope
Look up and return the value with the specified name in the scope.
get(String) - Method in interface ptolemy.data.expr.ParserScope
Look up and return the value with the specified name in the scope.
get(String) - Method in class ptolemy.data.expr.Variable.VariableScope
Look up and return the attribute with the specified name in the scope.
get(String) - Method in class ptolemy.data.RecordToken
Return the token with the specified label.
get(String) - Method in class ptolemy.data.type.AssociativeType
Return the type of the specified label.
get(String) - Method in class ptolemy.data.type.RecordType
Return the type of the specified label.
get(String) - Method in class ptolemy.data.type.UnionType
Return the type of the specified label.
get() - Method in class ptolemy.domains.de.kernel.DECQEventQueue
Return the earliest DE event in the queue without removing it from the queue.
get() - Method in interface ptolemy.domains.de.kernel.DEEventQueue
Return the earliest DE event in this event queue.
get() - Method in class ptolemy.domains.de.kernel.DEReceiver
Get the first token from the receiver.
get(String) - Method in class ptolemy.domains.modal.kernel.FSMActor.PortScope
Look up and return the attribute with the specified name in the scope.
get() - Method in class ptolemy.domains.modal.kernel.FSMReceiver
Get the contained Token.
get() - Method in class ptolemy.domains.pn.kernel.PNQueueReceiver
Get a token from this receiver.
get(int) - Method in class ptolemy.domains.sdf.kernel.ArrayFIFOQueue
Return an object in the queue or history.
get() - Method in class ptolemy.domains.sdf.kernel.SDFReceiver
Remove the first token (the oldest one) from the receiver and return it.
get(int) - Method in class ptolemy.domains.sdf.kernel.SDFReceiver
Return a token in the receiver or its history.
get(int) - Method in class ptolemy.graph.LabeledList
Return the element that has a specified label.
get(int) - Method in class ptolemy.graph.sched.Schedule
Return the element at the specified position in the list.
get(int) - Method in class ptolemy.kernel.util.CrossRefList
Get the container at the specified index.
get(String) - Method in class ptolemy.kernel.util.NamedList
Get an element by name.
get(long[], String) - Method in class ptolemy.matlab.Engine
Return a Token from the matlab engine using default Engine.ConversionParameters values.
get(long[], String, Engine.ConversionParameters) - Method in class ptolemy.matlab.Engine
Return a Token from the matlab engine using specified Engine.ConversionParameters values.
get(String) - Method in class ptolemy.moml.unit.Bindings
Get the value for a variable.
get(K) - Method in class ptolemy.util.MultiHashMap
Get the collection of values mapped to by a given key.
get1x1asScalars - Variable in class ptolemy.matlab.Expression
If true (checked), 1x1 matrix results are converted to ScalarTokens instead of a 1x1 MatrixToken, default is true.
Get2DPoint - Class in org.geon
Get 2D classification point for rock classification.
Get2DPoint(CompositeEntity, String) - Constructor for class org.geon.Get2DPoint
Construct an actor with the given container and name.
GET_BEGIN - Static variable in class ptolemy.actor.IOPortEvent
An event corresponding with the beginning of a token being received.
GET_END - Static variable in class ptolemy.actor.IOPortEvent
An event corresponding with the ending of a token being received.
GET_STRING_FROM_OWL_SERIALIZATION - Static variable in class org.kepler.sms.Util
 
GET_STRING_FROM_OWL_SERIALIZATION - Static variable in class org.kepler.tagging.gui.CBItems
 
getAbsoluteFileName() - Method in class org.kepler.objectmanager.cache.DataCacheObject
 
getAcceptedRating() - Method in class ptolemy.vergil.actor.DocManager
Return the Pt.AcceptedRating field, or null if none has been given.
getAccess(int) - Method in class ptolemy.kernel.util.test.AccessThread
 
getAccessToken(String, String, Handler<AsyncResult<String>>) - Static method in class org.kepler.gis.arcgis.FeatureServiceUtilities
Get an access token for ArcGIS.
getActionClass() - Method in class org.kepler.CommandLineArgument
Get the action class.
getActionFor(String, Map<String, Action>, TableauFrame) - Static method in class org.kepler.gui.MenuMapper
 
getActionMethod() - Method in class org.kepler.CommandLineArgument
Get the action method.
getActiveClassNames() - Method in class org.ecoinformatics.seek.ecogrid.SemRegIndex
getActiveClassNames Finds the active domain of class names of the index
getActiveCount() - Method in class ptolemy.actor.gui.ConfigurationApplication
Get the number of models that are active.
getActor() - Method in class org.kepler.hadoop.util.DDPPatternActorUtil
 
getActor() - Method in class org.kepler.objectmanager.ActorMetadata
return the actor this object was built from.
getActor() - Method in class org.kepler.provenance.FireState
Get the actor.
getActor() - Method in class ptolemy.actor.FiringEvent
Return the actor that is being activated.
getActor() - Method in class ptolemy.actor.process.ProcessThread
Return the actor being executed by this thread.
getActor() - Method in class ptolemy.actor.sched.Firing
Get the actor associated with this Firing.
getActor() - Method in interface ptolemy.actor.util.CausalityInterface
Return the associated actor.
getActor() - Method in class ptolemy.actor.util.DefaultCausalityInterface
Return the actor for which this is a dependency.
getActor() - Method in class ptolemy.domains.pn.kernel.event.PNProcessEvent
Return the actor corresponding to the process that generated the event.
getActorAsNamedObj(CompositeEntity) - Method in class org.kepler.objectmanager.ActorMetadata
return this actor as a ComponentEntity
getActorFiringForToken(int, boolean) - Method in class org.kepler.provenance.DefaultQuery
Get the firing id(s) of the actor(s) that read or wrote a token.
getActorFiringForToken(int, boolean) - Method in class org.kepler.provenance.prov.ProvQuery
Get the firing id(s) of the actor(s) that read or wrote a token.
getActorFiringForToken(int, boolean) - Method in interface org.kepler.provenance.Queryable
Get the firing id(s) of the actor(s) that read or wrote a token.
getActorFiringForToken(int, boolean) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the firing id(s) of the actor(s) that read or wrote a token.
getActorFiringIds(String, Integer) - Method in class org.kepler.provenance.DefaultQuery
 
getActorFiringIds(String, Integer) - Method in interface org.kepler.provenance.Queryable
Get actor fire ids based on its full name and workflow exec ID.
getActorFiringIds(String, Integer) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get actor fire ids based on its full name and workflow exec ID.
getActorFirings(int) - Method in class org.kepler.provenance.DefaultQuery
 
getActorFirings(int) - Method in class org.kepler.provenance.prov.ProvQuery
Get the actor firing ids for a workflow execution id.
getActorFirings(int) - Method in interface org.kepler.provenance.Queryable
Get all actor fire ids for a workflow exec ID.
getActorFirings(int) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get all actor fire ids for a workflow exec ID.
getActorId() - Method in class org.kepler.provenance.FireState
Get the actor's id.
getActorLibrary() - Method in class org.kepler.objectmanager.library.LibraryManager
Get the CompositeEntity version of the library.
getActorName() - Method in class org.kepler.gui.NewActorFrame
get the folder name from the user input. don't call this until the actionlistener has been fired.
getActorName(int) - Method in class org.kepler.provenance.DefaultQuery
 
getActorName(int) - Method in class org.kepler.provenance.prov.ProvQuery
Get the actor name for a firing id.
getActorName(int) - Method in interface org.kepler.provenance.Queryable
Get an actor's name for a firing id.
getActorName(int) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get an actor's name for a firing id.
getActorOrientedClass(String, VersionSpecification) - Method in interface org.ptolemy.classloading.ActorOrientedClassProvider
Returns the CompositeEntity providing the requested actor-oriented class definition, if this provider has it.
getActorPorts(NamedObj) - Method in class org.kepler.sms.actors.MergeActor
 
getActors() - Method in class org.kepler.sms.actors.MergeActor
Calculates the set of actors that are connected to this merge actor via one or more input ports.
getActorSemanticTypes(NamedObj) - Static method in class org.kepler.sms.SMSServices
 
getActorSemanticTypes(NamedObj) - Static method in class org.kepler.sms.util.SMSUtil
Copied into core module from the sms module.
getActorString() - Method in class org.kepler.moml.KeplerActorMetadata
 
getActorString() - Method in class org.kepler.objectmanager.cache.ActorCacheObject
Gets the actorString attribute of the ActorCacheObject object.
getActorType(int) - Method in class org.kepler.provenance.DefaultQuery
 
getActorType(int) - Method in interface org.kepler.provenance.Queryable
Get an actor's type for a firing id.
getActorType(int) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get an actor's type for a firing id.
getActualIndex(int) - Method in class org.sdm.spa.actors.piw.viz.Sequence
 
getAdd(String) - Method in class org.mlc.swing.layout.ComponentDef
 
getAdd() - Method in class org.mlc.swing.layout.NewComponentDialog
 
getAdded() - Method in class org.kepler.tagging.util.SetChange
 
getAdditionalListeners() - Method in class ptolemy.vergil.basic.EditorDropTarget
Return the Vector of listeners that have been registered.
getAdvancedAction() - Method in class org.kepler.gui.SearchUIJPanel
Returns the javax.swing.Action object that is called when the Advanced button is pressed.
getAlignment(CellConstraints.Alignment) - Static method in class org.mlc.swing.layout.LayoutConstraintsManager
Translates an alignment value to a string.
getAlignment(String) - Static method in class org.mlc.swing.layout.LayoutConstraintsManager
Translates a string to an alignment value.
getAlignmentLength() - Method in class org.kepler.bio.util.BlastTabularResult
 
getAll() - Static method in class org.kepler.CommandLineArgument
Get all the CommandLineArguments registered.
getAllDocs() - Static method in class org.kepler.kar.KarDoclet
Retrieve all the documentation.
getAllInputPorts(NamedObj) - Static method in class org.kepler.sms.SMSServices
 
getAllInputSemanticTypes(NamedObj) - Static method in class org.kepler.sms.SMSServices
Return all the input semantic types for the object.
getAllItemsAsListModel() - Method in class org.kepler.reporting.roml.ReportLayout
 
getAllOutputPorts(NamedObj) - Static method in class org.kepler.sms.SMSServices
 
getAllOutputSemanticTypes(NamedObj) - Static method in class org.kepler.sms.SMSServices
Return all the input semantic types for the object.
getAllPlots() - Static method in class org.kepler.plotting.Plot
 
getAllPorts(NamedObj) - Static method in class org.kepler.sms.SMSServices
Get all the ports, both "real" and "virtual" from a given named object.
getAllScopedObjectNames(NamedObj) - Static method in class ptolemy.data.expr.ModelScope
Return a list of object names in scope for variables in the given container.
getAllScopedVariableNames(Variable, NamedObj) - Static method in class ptolemy.data.expr.ModelScope
Return a list of variable names in scope for variables in the given container.
getAllSelectedServicesList() - Method in class org.ecoinformatics.seek.ecogrid.ServicesDisplayPanel
This method will return a vector which will a whole service was selected We consider the whole services was seleted: The service name was selected and all document types in the service were selected.
getAllUnSelectedServicesList() - Method in class org.ecoinformatics.seek.ecogrid.ServicesDisplayPanel
This method will return a vector which will a whole service was unselected We consider the whole services was seleted: 1. both service name and all document types in the service were unselected. 2. service name is selected, but the all documents types are unselected
getAlternateTopPack() - Method in class ptolemy.actor.gui.TableauFrame
Get the alternative pack() interface for the ptolemy.gui.Top JFrame.
getAnalysis(String) - Method in class ptolemy.actor.Manager
Get the analysis with the given name, or return null if no such analysis exists.
getAnalysis(NamedObj) - Static method in class ptolemy.actor.util.ConstVariableModelAnalysis
Return the analysis that is active for the given object.
getAnchor() - Method in class org.kepler.objectmanager.lsid.KeplerLSID
 
getAnimationDelay() - Method in class ptolemy.vergil.basic.BasicGraphController
Get the time delay for animation.
getAnnotation() - Method in class org.kepler.util.WorkflowRun
Get the WorkflowRun annotation.
getAnnotationObjects() - Method in class org.kepler.sms.gui.SemanticTypeTable
 
getAppClassName(String) - Static method in class org.kepler.webview.server.WebViewConfiguration
Get the class name of an app.
getApplet() - Method in class org.ecoinformatics.seek.querybuilder.QBApp
Returns the applet instance
getAppletInfo() - Method in class ptolemy.actor.gui.MoMLApplet
Return applet information.
getAppletInfo() - Method in class ptolemy.actor.gui.PtolemyApplet
Return a string describing this applet.
getAppletInfo() - Method in class ptolemy.gui.BasicJApplet
Return generic applet information.
getAppletInfo() - Method in class ptolemy.gui.test.GraphicalMessageHandlerApplet
Return a string describing this applet.
getAppletInfo() - Method in class ptolemy.plot.compat.PxgraphApplet
Return a string describing this applet.
getAppletInfo() - Method in class ptolemy.plot.demo.PlotDemo
Return a string describing this applet.
getAppletInfo() - Method in class ptolemy.plot.demo.PlotFourierSeries
Return a string describing this applet.
getAppletInfo() - Method in class ptolemy.plot.demo.PlotLiveDemoApplet
Return a string describing this applet.
getAppletInfo() - Method in class ptolemy.plot.HistogramApplet
Return a string describing this applet.
getAppletInfo() - Method in class ptolemy.plot.PlotApplet
Return a string describing this applet.
getAppletInfo() - Method in class ptolemy.plot.PlotLiveApplet
Return a string describing this applet.
getAppletInfo() - Method in class ptolemy.plot.plotml.EditablePlotMLApplet
Return a string describing this applet.
getAppletInfo() - Method in class ptolemy.plot.plotml.HistogramMLApplet
Return a string describing this applet.
getAppletInfo() - Method in class ptolemy.plot.plotml.PlotMLApplet
Return a string describing this applet.
getAppletInfo() - Method in class ptolemy.vergil.VergilApplet
Return a string describing this applet.
getAppProperties(String, String) - Static method in class org.kepler.webview.server.WebViewConfiguration
Get config properties for an app.
getArcModel() - Method in class ptolemy.vergil.modal.FSMGraphModel
Get the arc model.
getArgCount() - Method in class ptolemy.data.type.FunctionType
Return the number of arguments in this type.
getArgType(int) - Method in class ptolemy.data.type.FunctionType
Return the type of the given argument.
getArgTypeTerm(int) - Method in class ptolemy.data.type.FunctionType
Return the InequalityTerm representing the type of the given argument.
getArgTypeTerm(int) - Method in class ptolemy.data.type.TupleType
Return the InequalityTerm representing the type of the given argument.
getArgument(String) - Method in class org.kepler.ddp.actor.ExecutionChoice
Get the command line argument for a parameter.
getArgument(NamedObj, String) - Static method in class org.kepler.ddp.actor.ExecutionChoice
Get the command line argument for a parameter in a specific container
getArgumentNameList() - Method in class ptolemy.data.expr.ASTPtFunctionDefinitionNode
Return the list of argument names.
getArgumentParameter(String) - Method in class org.kepler.ddp.actor.ExecutionChoice
Get the parameter containing the command line argument for a parameter.
getArgumentParameter(NamedObj, String) - Static method in class org.kepler.ddp.actor.ExecutionChoice
Get the parameter containing the command line argument for a parameter in a specific container.
getArgumentTypes() - Method in class ptolemy.data.expr.ASTPtFunctionDefinitionNode
Return the type of the arguments, or null if type inference has not occurred yet.
getArray(int) - Method in class ptolemy.actor.AbstractReceiver
Get an array of tokens from this receiver.
getArray(int) - Method in interface ptolemy.actor.Receiver
Get an array of tokens from this receiver.
getArray(int) - Method in class ptolemy.domains.modal.kernel.FSMReceiver
If the argument is 1, there is a token, and the status is known, then return an array containing the one token.
getArray(int) - Method in class ptolemy.domains.sdf.kernel.SDFReceiver
Get an array of tokens from this receiver.
getAssignment() - Method in class ptolemy.data.expr.ASTPtAssignmentNode
 
getAssociatedComponent() - Method in class org.kepler.reporting.gui.DragAndDropPanel
 
getAssociatedDataForExecution(int, Map<String, String>, boolean) - Method in class org.kepler.provenance.DefaultQuery
 
getAssociatedDataForExecution(int, Map<String, String>, boolean) - Method in interface org.kepler.provenance.Queryable
Get a file associated with an execution.
getAssociatedDataForExecution(int, Map<String, String>, boolean) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get a file associated with an execution.
getAssociatedItem() - Method in class org.kepler.reporting.gui.DeleteItemButton
 
getAssociatedItem() - Method in class org.kepler.reporting.gui.DragAndDropPanel
 
getAssociatedItem() - Method in class org.kepler.reporting.gui.LabelPanel
 
getAssociatedItem() - Method in class org.kepler.reporting.gui.SectionTextReporting
 
getAssociatedItem() - Method in class org.kepler.reporting.gui.TextAreaReporting
 
getAssociatedKeysValuesForExecution(int) - Method in class org.kepler.provenance.DefaultQuery
Get any associated keys-values for an execution.
getAssociatedKeysValuesForExecution(int) - Method in interface org.kepler.provenance.Queryable
Get any associated keys-values for an execution.
getAssociatedKeysValuesForExecution(int) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get any associated keys-values for an execution.
getAssociatedObject() - Method in class ptolemy.data.type.MonotonicFunction
Return null.
getAssociatedObject() - Method in class ptolemy.data.type.TypeConstant
Return null.
getAssociatedObject() - Method in interface ptolemy.graph.InequalityTerm
Return the Object associated with this term.
getAssociatedObject() - Method in class ptolemy.graph.test.TestConstant
Return the string value.
getAssociatedObject() - Method in class ptolemy.graph.test.TestVariable
Return the string value.
getAssociatedPanel() - Method in class org.kepler.reporting.gui.DeleteItemButton
 
getAssociatedPanel() - Method in class org.kepler.reporting.gui.ReportItemButton
 
getAssociatedPanel() - Method in class org.kepler.reporting.gui.SectionTextReporting
 
getAssociatedPanel() - Method in class org.kepler.reporting.gui.TextAreaReporting
 
getAssociatedPort() - Method in class ptolemy.actor.lib.hoc.MirrorPort
Return the associated port, or null if there is none.
getAssociatedPort() - Method in class ptolemy.actor.parameters.ParameterMirrorPort
Return the associated port, or null if there is none.
getAssociatedWorkflowForWorkflowRun(KeplerLSID) - Method in class org.kepler.workflowrunmanager.WorkflowRunManager
Return the ComponenteEntity that was run to create the WorkflowRun that is identified by the given LSID.
getAttribute(String) - Method in interface org.kepler.ddp.actor.pattern.DDPPatternActor
Get the attribute with the given name.
getAttribute(String) - Method in class org.kepler.moml.KeplerActorMetadata
 
getAttribute(String) - Method in class org.kepler.objectmanager.cache.CacheObject
get the attribute with the specified name
getAttribute(String) - Method in interface org.kepler.objectmanager.cache.CacheObjectInterface
get the attribute with the specified name
getAttribute(String) - Method in class org.kepler.objectmanager.cache.WorkflowRunCacheObject
 
getAttribute(String) - Method in interface org.kepler.webview.actor.WebViewable
Get an attribute.
getAttribute(String) - Method in class ptolemy.domains.modal.modal.ModalModel
Get the attribute with the given name.
getAttribute(String) - Method in class ptolemy.kernel.CompositeEntity
Get the attribute with the given name.
getAttribute(String) - Method in class ptolemy.kernel.Entity
Get the attribute with the given name.
getAttribute(String) - Method in class ptolemy.kernel.util.NamedObj
Get the attribute with the given name.
getAttribute(String, Class) - Method in class ptolemy.kernel.util.NamedObj
Get the attribute with the given name and class.
getAttribute(String) - Method in interface ptolemy.kernel.util.ScopeExtender
Get the attribute with the given name.
getAttribute(String) - Method in class ptolemy.moml.EntityLibrary
Get the attribute with the given name.
getAttribute(String) - Method in class ptolemy.vergil.toolbox.GraphicElement
Return the value of the attribute with the given name.
getAttributeCount(String) - Method in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200Parser
returns the number of attributes in the given entity
getAttributeDefaultValue(String, String) - Method in class com.microstar.xml.XmlParser
Retrieve the default value of a declared attribute.
getAttributeDefaultValueType(String, String) - Method in class com.microstar.xml.XmlParser
Retrieve the default value type of a declared attribute.
getAttributeEnumeration(String, String) - Method in class com.microstar.xml.XmlParser
Retrieve the allowed values for an enumerated attribute type.
getAttributeExpandedValue(String, String) - Method in class com.microstar.xml.XmlParser
Retrieve the expanded value of a declared attribute.
getAttributeList() - Method in class org.sdm.spa.util.ActorInspector
 
getAttributeNames() - Method in class org.kepler.objectmanager.cache.CacheObject
 
getAttributes() - Method in class org.kepler.kar.KAREntry
get the attributes object for this entry
getAttributes() - Method in class org.kepler.moml.KeplerActorMetadata
 
getAttributes() - Method in class org.kepler.objectmanager.data.db.AttributeList
 
getAttributes() - Method in class org.kepler.objectmanager.data.db.Entity
Return the unit for this TableEntity
getAttributes() - Method in class org.kepler.objectmanager.library.LibItem
 
getAttributes() - Method in class ptolemy.kernel.util.NamedObj
Deprecated.
Use attributeList() instead.
getAttributes() - Method in class ptolemy.moml.LibraryBuilder
Get the list of Attributes associated with this LibraryBuilder.
getAttributeType(String, String) - Method in class com.microstar.xml.XmlParser
Retrieve the declared type of an attribute.
getAttributeValue(String) - Method in class org.kepler.objectmanager.library.LibItem
 
getAttrsForXML() - Method in class org.ecoinformatics.seek.datasource.EcogridDataCacheItem
 
getAttrValue(File, String, String) - Method in class org.geon.GeonXMLUtil
 
getAuthDomain() - Method in class org.kepler.objectmanager.repository.Repository
return the authentication service path
getAuthenticatedQueryPath() - Method in class org.kepler.objectmanager.repository.Repository
return the authenticated query service path
getAuthenticationService(String) - Method in class org.kepler.authentication.AuthenticationManager
return an AuthenticationService for the given domain name
getAuthenticationService(Domain) - Static method in class org.kepler.authentication.AuthenticationManager
returns an instantiation of the correct AuthenticationService based on the serviceClass listed for the domain.
getAuthNamespace() - Method in class org.kepler.util.AuthNamespace
 
getAuthor() - Method in class ptolemy.vergil.actor.DocManager
Return the author field, or the string "No author given" if none has been given.
getAuthor() - Method in class ptolemy.vergil.basic.KeplerDocumentationAttribute
Return the author.
getAuthority() - Method in class org.kepler.objectmanager.lsid.KeplerLSID
returns the authority component of this lsid
getAuthority() - Method in class org.kepler.util.AuthNamespace
 
getAuthorizationPath() - Method in class org.kepler.objectmanager.repository.Repository
return the authorization service path
getAuthorizationServerURL() - Method in class org.kepler.objectmanager.repository.EcogridRepository
Get the url for the authorization service associated with this repository
getAuthProtocol() - Method in class org.kepler.objectmanager.repository.Repository
return the protocol of the authentication
getAuthProvider() - Static method in class org.kepler.webview.server.WebViewConfiguration
Get an authentication provider based on the authentication type specified in the configuration.
getAutoCompletions() - Method in class org.kepler.tagging.gui.AutoCompleteComboBox
 
getAutomaticTypeConversion() - Method in class ptolemy.actor.TypedIOPort
Indicates whether conversion of received tokens is enabled or not.
getAuxVariables() - Method in class ptolemy.domains.continuous.kernel.ContinuousIntegrator
Return the auxiliary variables in a double array.
getAvailableAuthMethods() - Method in class org.kepler.ssh.GsiSshExec
 
getAvailableFieldNames(String) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelBase
Returns the available field names for a table
getAvailableLocations() - Method in class org.kepler.gui.ClassicViewPane
 
getAvailableLocations() - Method in class org.kepler.gui.DefaultViewPane
 
getAvailableLocations() - Method in class org.kepler.gui.DualVerticalViewPane
 
getAvailableLocations() - Method in class org.kepler.gui.SingleViewPane
 
getAvailableTableNames(int) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelBase
Returns a vector of table names and includes the name of the table identified by the aRow parameter
getAverageCharacterWidthTestString() - Method in class com.jgoodies.forms.util.DefaultUnitConverter
Returns the string used to compute the average character width.
getAwtColor() - Method in class org.kepler.sms.Color
 
getBackground() - Method in class ptolemy.actor.gui.TextEditor
Get the background color.
getBackground() - Method in class ptolemy.actor.lib.gui.SliderSource
Return the background.
getBackground() - Method in class ptolemy.actor.lib.image.ImageDisplay
Get the background.
getBackground() - Method in interface ptolemy.actor.lib.image.ImageDisplayInterface
Get the background.
getBackground() - Method in class ptolemy.actor.lib.image.ImageDisplayJavaSE
Get the background.
getBackground() - Method in class ptolemy.domains.de.lib.EventButton
Deprecated.
Get the background color.
getBackgroundColor() - Method in class org.kepler.monitor.figure.ProgressBarFigure
 
getBackgroundColor() - Method in class ptolemy.gui.QueryChooser
Returns the color for the background.
getBase() - Method in class ptolemy.kernel.util.ConfigurableAttribute
Return the base specified in the most recent call to the configure() method, or null if none.
getBase64data() - Method in class org.kepler.reporting.rio.ItemValue
 
getBaseConversion() - Method in class ptolemy.data.expr.CachedMethod.BaseConvertCachedMethod
Return the conversion that is applied to the object upon which the method is invoked.
getBaseDirectory() - Method in class ptolemy.actor.parameters.FilePortParameter
Return the directory to use as the base for relative file or URL names.
getBaseDirectory() - Method in class ptolemy.data.expr.FileParameter
Return the directory to use as the base for relative file or URL names.
getBaseDirectory() - Method in class ptolemy.kernel.attributes.FileAttribute
Deprecated.
Return the directory to use as the base for relative file or URL names.
getBaseDirectory() - Method in interface ptolemy.kernel.attributes.FileOrURLAccessor
Return the directory to use as the base for relative file or URL names.
getBaseFileName() - Method in class org.kepler.objectmanager.cache.DataCacheObject
 
getBaseUnit() - Method in class ptolemy.data.unit.UnitCategory
Return the base unit.
getBaseUnit(int) - Static method in class ptolemy.moml.unit.UnitLibrary
Find the Unit in the library that is basic (scale equal to 1), singular (all but one dimensions equal to 0).
getBaseUnitName(int) - Static method in class ptolemy.data.unit.UnitUtilities
Return the name of the base unit of the specified category.
getBasicActorLibrary() - Method in class org.ecoinformatics.seek.sms.KeplerLocalLSIDService
This operation provides access to the assigned library model.
getBasicConfig() - Method in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Get the parameter values from the GUI input.
getBasicGraphFrame(NamedObj) - Static method in class ptolemy.vergil.basic.BasicGraphFrame
Given a NamedObj, return the corresponding BasicGraphFrame.
getBasicGraphFrame(Effigy) - Static method in class ptolemy.vergil.basic.BasicGraphFrame
Given an Effigy, return the corresponding BasicGraphFrame, if any.
getBeginColumn() - Method in class ptolemy.data.expr.SimpleCharStream
Get token beginning column number.
getBeginColumn() - Method in class ptolemy.moml.unit.SimpleCharStream
Get token beginning column number.
getBeginLine() - Method in class ptolemy.data.expr.SimpleCharStream
Get token beginning line number.
getBeginLine() - Method in class ptolemy.moml.unit.SimpleCharStream
Get token beginning line number.
getBendPointList() - Method in class ptolemy.vergil.actor.LayoutHint.LayoutHintItem
Get a list of Point2D corresponding to the bend points stored in this item.
getBendPoints() - Method in class ptolemy.vergil.actor.LayoutHint.LayoutHintItem
Get the bend points stored in this hint as an array of doubles, where each two entries correspond to x and y of one bend point.
getBindings() - Method in class ptolemy.actor.injection.PtolemyModule
Return the bindings from interfaces to their implementations.
getBinFile() - Method in class org.kepler.job.Job
 
getBitScore() - Method in class org.kepler.bio.util.BlastTabularResult
 
getBitsPerSample() - Static method in class ptolemy.media.javasound.LiveSound
Return the number of bits per audio sample, which is set by the setBitsPerSample() method.
getBitsPerSample() - Method in class ptolemy.media.javasound.LiveSoundCommon
Return the number of bits per sample.
getBitsPerSample() - Method in interface ptolemy.media.javasound.LiveSoundInterface
Return the number of bits per audio sample, which is set by the setBitsPerSample() method.
getBitsPerSample() - Method in class ptolemy.media.javasound.SoundReader
Return the number of bits per audio sample.
getBlockingCause() - Method in class ptolemy.domains.pn.kernel.event.PNProcessEvent
Return the cause of the blocking state.
getBodyContent() - Method in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Get the body content.
getBoolean(int) - Method in class org.json.JSONArray
Get the boolean value associated with an index.
getBoolean(String) - Method in class org.json.JSONObject
Get the boolean value associated with a key.
getBoolean(String, boolean) - Static method in class org.kepler.util.StaticResources
Search the uiDisplayText resourcebundle for the property specified by the key parameter.
getBooleanValue(String) - Method in class org.kepler.provenance.RecordingParameters
Get the value of a boolean parameter.
getBooleanValue(String) - Method in class ptolemy.gui.Query
Get the current value in the entry with the given name and return as a boolean.
getBoolOperSymbol(String) - Static method in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIStd
Returns the symbol for the text descript
getBorderInsets(Component) - Method in class com.jgoodies.forms.factories.Borders.EmptyBorder
Returns the insets of the border.
getBorderInsets(Component) - Method in class org.kepler.reporting.gui.OvalBorder
 
getBorderTitle() - Method in class org.kepler.gui.SearchUIJPanel
Returns the border title for this search panel.
getBottomPanel() - Method in class org.kepler.gui.AbstractDialogTab
get the Component that will be displayed in the SOUTH section of the BorderLayout.
getBottomPanel() - Method in class org.kepler.gui.DialogAnnotationsTab
get the Component that will be displayed in the SOUTH section of the BorderLayout.
getBottomPanel() - Method in class org.kepler.gui.DialogGeneralTab
getBottomPanel
getBottomPanel() - Method in class org.kepler.gui.DialogParametersTab
getBottomPanel
getBottomPanel() - Method in class org.kepler.gui.DialogPortsTab
get the Component that will be displayed in the SOUTH section of the BorderLayout.
getBottomPanel() - Method in class org.kepler.gui.DialogUnitsTab
get the Component that will be displayed in the SOUTH section of the BorderLayout.
GetBoundingBox - Class in org.kepler.gis.actor
Get the bounding box for a GIS data set.
GetBoundingBox(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.GetBoundingBox
Create a new GetBoundingBox with a given container and name.
getBoundingBox(Token) - Static method in class org.kepler.gis.actor.GetBoundingBox
Get the bounding box for a GIS dataset in a token.
getBoundingBox(Token, CoordinateReferenceSystem) - Static method in class org.kepler.gis.actor.GetBoundingBox
Get the bounding box for a GIS dataset in a token with a specific crs.
getBounds() - Method in class org.ecoinformatics.seek.querybuilder.DBTableField
Returns the bounds of the item
getBounds() - Method in interface org.ecoinformatics.seek.querybuilder.DBWhereIFace
Its bounds of where it is being rendered
getBounds() - Method in class org.ecoinformatics.seek.querybuilder.DBWhereListCellBase
Returns the bounds
getBounds() - Method in class ptolemy.vergil.kernel.ShadowHighlighter
Get the bounds.
getBranchList() - Method in class ptolemy.actor.process.BranchController
Return the list of branches controlled by this controller.
getBriefName() - Method in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreMetaDataSpecification
 
getBriefName() - Method in class org.ecoinformatics.seek.datasource.eml.eml2.EML2MetadataSpecification
 
getBriefName() - Method in class org.ecoinformatics.seek.ecogrid.MetadataSpecificationInterface
 
getBriefName() - Method in class org.kepler.dataproxy.metadata.ADN.ADNMetadataSpecification
 
getBufferSize() - Method in class org.kepler.bio.stratosphere.input.FASTAInputFormat
Gets the size of the buffer internally used to parse record boundaries.
getBufferSize() - Method in class org.kepler.bio.stratosphere.input.FASTAInputFormatBySize
Gets the size of the buffer internally used to parse record boundaries.
getBufferSize() - Static method in class ptolemy.media.javasound.LiveSound
Return the suggested size of the internal capture and playback audio buffers, in samples per channel.
getBufferSize() - Method in class ptolemy.media.javasound.LiveSoundCommon
Return the suggested size of the internal capture and playback audio buffers, in samples per channel.
getBufferSize() - Method in interface ptolemy.media.javasound.LiveSoundInterface
Return the suggested size of the internal capture and playback audio buffers, in samples per channel.
getBufferSizeCapture() - Static method in class ptolemy.media.javasound.LiveSound
Return the size of the internal capture audio buffer, in samples per channel.
getBufferSizeCapture() - Method in interface ptolemy.media.javasound.LiveSoundInterface
Return the size of the internal capture audio buffer, in samples per channel.
getBufferSizeCapture() - Method in class ptolemy.media.javasound.LiveSoundJavaSE
Return the size of the internal capture audio buffer, in samples per channel.
getBufferSizePlayback() - Static method in class ptolemy.media.javasound.LiveSound
Return the size of the internal playback audio buffer, in samples per channel.
getBufferSizePlayback() - Method in interface ptolemy.media.javasound.LiveSoundInterface
Return the size of the internal playback audio buffer, in samples per channel.
getBufferSizePlayback() - Method in class ptolemy.media.javasound.LiveSoundJavaSE
Return the size of the internal playback audio buffer, in samples per channel.
getBundle(String) - Static method in class ptolemy.util.OrderedResourceBundle
Get a resource bundle using the specified base name and the default locale.
getButtonBarPad() - Method in class com.jgoodies.forms.util.LayoutStyle
Returns a pad used to separate a button bar from a component.
getButtonPanel() - Method in class org.ecoinformatics.seek.ecogrid.EcogridPreferencesTab
Method to get button panel
getCacheContent() - Method in class org.kepler.kar.KARCacheContent
 
getCachedContents() - Method in class org.kepler.objectmanager.cache.CacheManager
 
getCachedContents(String) - Method in class org.kepler.objectmanager.cache.CacheManager
 
getCachedLsids() - Method in class org.kepler.objectmanager.cache.CacheManager
Return a complete list of KeplerLSIDs for everything that is in the cache.
getCachedLsids(KeplerLSID) - Method in class org.kepler.objectmanager.cache.CacheManager
 
getCachedLsidsForClass(String) - Method in class org.kepler.objectmanager.cache.CacheManager
Get a list of LSIDs for a class name.
getCachedMethodType() - Method in class ptolemy.data.expr.CachedMethod
Return the type of this class, which is one of METHOD or FUNCTION.
getCachedResult() - Method in class ptolemy.graph.analysis.strategy.CachedStrategy
The result of the most recent cached computation of the analysis, as determined by CachedStrategy._compute(), and without conversion by CachedStrategy._convertResult(Object).
getCacheItem(DataCacheListener, String, String, String) - Static method in class org.kepler.objectmanager.cache.DataCacheManager
 
getCacheItem(DataCacheListener, String, String, String, String) - Static method in class org.kepler.objectmanager.cache.DataCacheManager
 
getCacheObject() - Method in class org.kepler.objectmanager.cache.CacheEvent
 
getCacheObject() - Method in class org.kepler.objectmanager.repository.EcogridRepositoryResults
 
getCacheObjectIterator() - Method in class org.kepler.objectmanager.cache.CacheManager
return an iterator of all of the CacheObjectInterfaces in the cache
getCacheObjectIterator(String) - Method in class org.kepler.objectmanager.cache.CacheManager
 
getCalendarInstance() - Method in class ptolemy.data.DateToken
Get the calendar instance representing this date.
getCancelAction() - Method in class org.kepler.gui.SearchUIJPanel
Returns the javax.swing.Action object that is called when the Cancel button is pressed.
getCandidateIndex() - Method in class org.kepler.plotting.Row
 
getCandidateValue() - Method in class org.kepler.plotting.Row
 
getCanvas() - Method in class org.kepler.tagging.gui.TagBarDisplayUI
 
getCapacity() - Method in class ptolemy.actor.QueueReceiver
Return the capacity, or INFINITE_CAPACITY if it is unbounded.
getCapacity() - Method in class ptolemy.actor.util.FIFOQueue
Return the queue capacity, or INFINITE_CAPACITY if it is unbounded.
getCapacity() - Method in class ptolemy.domains.sdf.kernel.ArrayFIFOQueue
Return the queue capacity.
getCapacity() - Method in class ptolemy.domains.sdf.kernel.SDFReceiver
Return the capacity, or INFINITE_CAPACITY if it is unbounded.
getCaptions() - Method in class ptolemy.plot.PlotBox
Get the captions.
getCaptions() - Method in interface ptolemy.plot.PlotBoxInterface
Get the captions.
getCardinality(Port) - Static method in class ptolemy.vergil.actor.IOPortController
Return one of {-270, -180, -90, 0, 90, 180, 270} specifying the orientation of a port.
getCaseInsensitiveName() - Method in class org.kepler.tagging.gui.CBItems.ExistingConceptCBItem
 
getCaseSensitive() - Method in class org.kepler.objectmanager.data.db.Entity
indicates whether the tableEntity is caseSensitive or not
getCatalog() - Method in class org.kepler.tagging.gui.CBItems.ExistingConceptCBItem
 
getCausalityInterface() - Method in interface ptolemy.actor.Actor
Return a causality interface for this actor.
getCausalityInterface() - Method in class ptolemy.actor.AtomicActor
Return a causality interface for this actor.
getCausalityInterface() - Method in class ptolemy.actor.CompositeActor
Return a causality interface for this actor.
getCausalityInterface() - Method in class ptolemy.actor.Director
Return a causality interface for the composite actor that contains this director.
GetCausalityInterface - Class in ptolemy.actor.lib
Actor that reads the causality interface of its container or an actor inside the container and produces a string describing it.
GetCausalityInterface(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.GetCausalityInterface
Construct an actor with the given container and name.
getCausalityInterface() - Method in class ptolemy.actor.lib.hoc.ThreadedComposite
Override the base class to return a causality interface that indicates that the output does not depend (immediately) on the input.
getCausalityInterface() - Method in class ptolemy.domains.continuous.kernel.ContinuousIntegrator
Return a causality interface for this actor.
getCausalityInterface() - Method in class ptolemy.domains.de.kernel.DEDirector
Return a causality interface for the composite actor that contains this director.
getCausalityInterface() - Method in class ptolemy.domains.de.test.SuperdenseTimeTest
Override the base class to return a causality interface that indicates that no output depends (immediately) on any input, and that also puts both input ports in an equivalence class.
getCausalityInterface() - Method in class ptolemy.domains.modal.kernel.FSMActor
Return a causality interface for this actor.
getCausalityInterface() - Method in class ptolemy.domains.modal.modal.ModalModel
Get representation of dependencies between input ports and output ports.
getCause() - Method in exception com.microstar.xml.XmlException
Get the cause of this exception.
getCause() - Method in exception org.json.JSONException
 
getCause() - Method in exception ptolemy.kernel.util.KernelException
Get the cause of this exception.
getCause() - Method in exception ptolemy.kernel.util.KernelRuntimeException
Get the cause of this exception.
getCellConstraints() - Method in class org.mlc.swing.layout.ContainerLayout
 
getCellConstraints(String) - Method in class org.mlc.swing.layout.ContainerLayout
 
getCellEditor(int, int) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIBase
Receices this notification before the editor is paced in the cell
getCellEditor(int, int) - Method in class org.kepler.plotting.DataTable
 
getCellEditor(int, int) - Method in class org.kepler.reporting.gui.PropertiesTable
 
getCellEditor() - Method in class org.kepler.workflowrunmanager.gui.GroupableTableHeader
 
getCellEditor(int) - Method in class org.kepler.workflowrunmanager.gui.GroupableTableHeader
 
getCellEditorValue() - Method in class org.kepler.plotting.table.ColorTableCellEditor
 
getCellEditorValue() - Method in class org.kepler.tagging.gui.ColorTableCellEditor
 
getCellEditorValue() - Method in class org.kepler.workflowrunmanager.gui.DateCellEditor
 
getCellEditorValue() - Method in class org.kepler.workflowrunmanager.gui.DurationCellEditor
 
getCellEditorValue() - Method in class org.kepler.workflowrunmanager.gui.ExecIdCellEditor
 
getCellEditorValue() - Method in class ptolemy.actor.gui.PortConfigurerDialog.ValidatingComboBoxCellEditor
Get the cell editor value.
getCellEditorValue() - Method in class ptolemy.actor.gui.PortConfigurerDialog.ValidatingJTextFieldCellEditor
Get the cell editor value.
getCellRenderer(int, int) - Method in class org.kepler.plotting.DataTable
 
getCenter() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Return the center location of the visible part of the pane.
getCentering() - Method in class ptolemy.gui.Top
Return true if the window is set to be centered when pack() is called.
getCenterPanel() - Method in class org.kepler.gui.AbstractDialogTab
get the Component that will be displayed in the CENTER section of the BorderLayout.
getCenterPanel() - Method in class org.kepler.gui.DialogAnnotationsTab
get the Component that will be displayed in the CENTER section of the BorderLayout.
getCenterPanel() - Method in class org.kepler.gui.DialogGeneralTab
getCenterPanel
getCenterPanel() - Method in class org.kepler.gui.DialogParametersTab
getCenterPanel
getCenterPanel() - Method in class org.kepler.gui.DialogPortsTab
get the Component that will be displayed in the CENTER section of the BorderLayout.
getCenterPanel() - Method in class org.kepler.gui.DialogUnitsTab
get the Component that will be displayed in the CENTER section of the BorderLayout.
getCenterPoint(Site) - Static method in class ptolemy.vergil.actor.KielerLayoutUtil
Get the center point of a Perimeter Site.
GetCentroids - Class in org.kepler.gis.actor
Get a the centroid(s) of a GIS data set.
GetCentroids(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.GetCentroids
 
getCGroupHeight() - Method in class org.kepler.workflowrunmanager.gui.GroupableTableHeaderUI
 
getChangeContext(Variable) - Method in class ptolemy.actor.util.ConstVariableModelAnalysis
Return the change context of the given variable.
getChanged() - Method in class org.kepler.objectmanager.ActorMetadata
get the changed flag. this is useful for keeping track of the state of the actor metadata. this flag does not affect this class in any internal way except for setting the flag.
getChangedState() - Method in class org.kepler.gui.state.StateChangeEvent
Get the value of the changedState for this event.
getChangeListeners() - Method in class ptolemy.kernel.util.NamedObj
Return a list of weak references to change listeners, or null if there is none.
getChangesForTimespan(Date, Date) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get changes within a timespan.
getChannel() - Method in class org.kepler.provenance.IOPortRefillEvent
Return the channel.
getChannel() - Method in class ptolemy.actor.IOPortEvent
Return the channel on which the token was sent or received.
getChannel() - Method in class ptolemy.actor.TokenGotEvent
Deprecated.
Return the channel the token was received on.
getChannel() - Method in class ptolemy.actor.TokenSentEvent
Deprecated.
Return the channel the token was sent on.
getChannelForReceiver(Receiver) - Method in class ptolemy.actor.IOPort
Return the corresponding channel in this port for the given receiver.
getChannelForToken(int, boolean, Integer) - Method in class org.kepler.provenance.DefaultQuery
Get the channel that a token was read or written on.
getChannelForToken(int, boolean, Integer) - Method in class org.kepler.provenance.prov.ProvQuery
Get the channel that a token was read or written on.
getChannelForToken(int, boolean, Integer) - Method in interface org.kepler.provenance.Queryable
Get the channel that a token was read or written on.
getChannelForToken(int, boolean, Integer) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the channel that a token was read or written on.
getChannelNumberList() - Method in class ptolemy.domains.modal.kernel.AbstractActionsAttribute
Return the list of channel numbers given in expression set for this attribute.
getChannels() - Static method in class ptolemy.media.javasound.LiveSound
Return the number of audio channels, which is set by the setChannels() method.
getChannels() - Method in class ptolemy.media.javasound.LiveSoundCommon
Return the number of audio channels, which is set by the setChannels() method.
getChannels() - Method in interface ptolemy.media.javasound.LiveSoundInterface
Return the number of audio channels, which is set by the setChannels() method.
getChannels() - Method in class ptolemy.media.javasound.SoundCapture
Return the number of audio channels.
getChannels() - Method in class ptolemy.media.javasound.SoundReader
Return the number of audio channels.
getCharArrayValue(String) - Method in class ptolemy.gui.Query
Get the current value in the entry with the given name and return as an array of characters.
getChart() - Method in class org.kepler.plotting.Plot
 
getChartPanel() - Method in class org.kepler.plotting.Plot
 
getCheckboxState() - Method in class org.kepler.tagging.TagReloadType.TagCacheChange
 
getChild(Object, int) - Method in class org.kepler.gui.FilteredVisibleTreeModel
 
getChild(Object, int) - Method in class org.kepler.gui.SubsetWorkflowOutlineTreeModel
Get the child of the given parent at the given index.
getChild(Object, int) - Method in class org.kepler.gui.WorkflowOutlineTreeModel
Get the child of the given parent at the given index.
getChild(Object, int) - Method in class org.kepler.profiling.gui.WorkflowOutlineTreeActorFireModel
Get the child of the given parent at the given index.
getChild(Object, int) - Method in class org.sdm.spa.gui.XMLUIP.DomToTreeModelAdapter
 
getChild(Object, int) - Method in class ptolemy.vergil.tree.ClassAndEntityTreeModel
Get the child of the given parent at the given index.
getChild(Object, int) - Method in class ptolemy.vergil.tree.CompositeTreeModel
Get the child of the given parent at the given index.
getChild(Object, int) - Method in class ptolemy.vergil.tree.EntityTreeModel
Get the child of the given parent at the given index.
getChild(Object, int) - Method in class ptolemy.vergil.tree.FullTreeModel
Get the child of the given parent at the given index.
getChildCount(Object) - Method in class org.kepler.gui.FilteredVisibleTreeModel
 
getChildCount(Object) - Method in class org.kepler.gui.SubsetWorkflowOutlineTreeModel
Returns the number of children of the given parent.
getChildCount(Object) - Method in class org.kepler.gui.WorkflowOutlineTreeModel
Return the number of children of the given parent.
getChildCount(Object) - Method in class org.kepler.profiling.gui.WorkflowOutlineTreeActorFireModel
Return the number of children of the given parent, which in this base class is the number of contained entities.
getChildCount(Object) - Method in class org.sdm.spa.gui.XMLUIP.DomToTreeModelAdapter
 
getChildCount(Object) - Method in class ptolemy.vergil.tree.ClassAndEntityTreeModel
Return the number of children of the given parent.
getChildCount(Object) - Method in class ptolemy.vergil.tree.CompositeTreeModel
Return the number of children of the given parent, which in this base class is the number of contained entities.
getChildCount(Object) - Method in class ptolemy.vergil.tree.EntityTreeModel
Return the number of children of the given parent, which in this base class is the number of contained entities.
getChildCount(Object) - Method in class ptolemy.vergil.tree.FullTreeModel
Return the number of children of the given parent.
getChildren() - Method in class ptolemy.kernel.InstantiableNamedObj
Get a list of weak references to instances of Instantiable that are children of this object.
getChildren() - Method in interface ptolemy.kernel.util.Instantiable
Return a list of weak references to instances of Instantiable that are children of this object.
getChildren() - Method in class ptolemy.kernel.util.test.TestInstantiableAttribute
 
getChildren() - Method in class ptolemy.kernel.util.test.TestInstantiableNamedObj
 
getCHListSize() - Method in class org.ecoinformatics.seek.gis.java_gis.ConvexHull
 
getChoice() - Method in class org.kepler.sms.gui.CompositePortDialog
 
getChoice() - Method in class org.kepler.sms.gui.OntoClassSearchDialog
 
getChoice() - Method in class org.kepler.sms.gui.OntoPropSearchDialog
 
getChoices() - Method in class ptolemy.data.expr.Parameter
Get choices.
getChosenValue() - Method in class ptolemy.data.expr.ChoiceParameter
Get the choice as a member of the enum class.
getClass(String, VersionSpecification) - Method in interface org.ptolemy.classloading.ModelElementClassProvider
Return the requested class for the requested version (if specified).
getClass(String, VersionSpecification) - Method in class org.ptolemy.classloading.osgi.DefaultModelElementClassProvider
Get a class by name and version.
getClass(String, VersionSpecification) - Method in class org.ptolemy.classloading.osgi.PackageBasedModelElementClassProvider
Return the requested class for the requested version (if specified).
getClassBytes() - Method in class org.kepler.scriptengine.java.MemoryJavaFileManager
 
getClasses() - Method in class org.kepler.tagging.gui.ExistingTagsPanel
 
getClassFiles() - Static method in class org.kepler.kar.SuperClassPathFinderDoclet
Get the collection of path names.
getClassId() - Method in class org.kepler.objectmanager.ActorMetadata
return the id of the class
getClassifications() - Method in class org.geon.LidarJobConfig
 
getClassLoader() - Method in class ptolemy.actor.injection.PtolemyModule
Return the (optional) specific class loader for the implementation classes.
getClassName() - Method in class org.kepler.gui.NewActorFrame
get the class name from the user input. don't call this until the actionlistener has been fired.
getClassName() - Static method in class org.kepler.kar.SuperClassPathFinderDoclet
Get the class name of the primary object.
getClassName() - Method in class org.kepler.moml.KeplerActorMetadata
 
getClassName() - Method in class org.kepler.objectmanager.ActorMetadata
return the classname of the actor object. this will be the java type classname no matter what kind of actor we are describing. for instance if it is a java class, it will be a.b.c.ClassName where the file is stored in a/b/c/ClassName.class.
getClassName() - Method in class org.kepler.objectmanager.cache.ActorCacheObject
Gets the className attribute of the ActorCacheObject object.
getClassName() - Method in class org.kepler.objectmanager.cache.CacheContent
 
getClassName() - Method in interface ptolemy.kernel.util.MoMLExportable
Return the class name.
getClassName() - Method in class ptolemy.kernel.util.NamedObj
Return the MoML class name.
getClassName() - Method in class ptolemy.vergil.actor.DocManager
Return the class name, or null if none has been given.
getClearButton() - Method in class org.kepler.plotting.Plot
 
getClientBuffer(NamedObj) - Static method in class org.kepler.webview.server.WebViewServer
Get the client buffers for a workflow.
getClip() - Method in class ptolemy.plot.EPSGraphics
 
getClipBounds() - Method in class ptolemy.plot.EPSGraphics
 
getClockDrift() - Method in class ptolemy.actor.LocalClock
Get clock drift.
getClosestUnit(Unit) - Static method in class ptolemy.moml.unit.UnitLibrary
Search Library to find Unit that has the same type and is the closest to a unit in terms of the scalars.
getClosure() - Method in class org.ecoinformatics.seek.querybuilder.DBWhereOperator
Return the close object
getCls() - Method in class org.kepler.tagging.gui.CBItems.ExistingConceptCBItem
 
getCmdLineOptions() - Method in class org.sdm.spa.actors.transport.FileCopierBase
 
getCmdWithDefaultPath(StringBuffer) - Method in class org.sdm.spa.actors.transport.FileCopierBase
This is used to set the users PATH variable, if the user has not specified the path where the protocol is installed.
getCollapseDelimiter() - Method in class org.kepler.objectmanager.data.db.Entity
Method to get if this entity can collapse consecutive delimiter
getCollapseDelimiter() - Method in class org.kepler.objectmanager.data.text.TextDelimitedDataFormat
 
getColor(String, String, String) - Static method in class org.kepler.gui.StaticGUIResources
Search the uiSettings resourcebundle for the 3 color components specified by the redComponent, greenComponent and blueComponent properties.
getColor() - Method in class org.kepler.plotting.Row
 
getColor() - Method in class org.kepler.sms.NamedOntModel
 
getColor() - Method in class org.kepler.sms.OntologyRow
 
getColor() - Method in class org.kepler.tagging.gui.DeletableColorIconLabel
Get the color of the icon
getColor() - Method in class ptolemy.plot.EPSGraphics
Get the current color.
getColor() - Method in class ptolemy.plot.PlotBox
Return whether the plot uses color.
getColor() - Method in interface ptolemy.plot.PlotBoxInterface
Return whether the plot uses color.
getColorByName(String) - Static method in class ptolemy.plot.PlotBox
Convert a color name into a Color.
getColors() - Method in class ptolemy.plot.PlotBox
Get the point colors.
getColors() - Method in interface ptolemy.plot.PlotBoxInterface
Get the point colors.
getColorScheme(Object) - Method in class org.kepler.monitor.figure.StateFigure
Returns the color scheme associated with a state.
getColumn() - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Returns the cursor's column.
getColumn() - Method in exception com.microstar.xml.XmlException
Get the column number containing the error.
getColumn(int) - Method in class org.kepler.profiling.gui.ExecutionMonitorPanel.ActorInfo
Get the object for a column in the execution table.
getColumn() - Method in class org.kepler.util.sql.Table.ForeignKey
Get the column name.
getColumn(String) - Method in class org.kepler.util.sql.Table
Get a specific column.
getColumn() - Method in class ptolemy.data.expr.SimpleCharStream
Deprecated.
getColumn() - Method in class ptolemy.moml.unit.SimpleCharStream
Deprecated.
getColumnAlterStr() - Method in class org.kepler.util.sql.DatabaseType
Get the string used in SQL statements to modify the data type of a column.
getColumnAlterStr() - Method in class org.kepler.util.sql.HSQL
Get the string used in SQL statements to modify the data type of a column.
getColumnClass(int) - Method in class org.ecoinformatics.seek.ecogrid.ServicesDisplayTableModel
Return the Class for each column so that they can be rendered correctly.
getColumnClass(int) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelAdv
Returns the Class object for a column
getColumnClass(int) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelBase
Returns the Class object for a column
getColumnClass(int) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelStd
Returns the Class object for a column
getColumnClass(int) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableOverviewModel
Returns the Class object for a column
getColumnClass(int) - Method in class org.kepler.gui.ComponentLibraryPreferencesTab.ComponentSourceTableModel
 
getColumnClass(int) - Static method in class org.kepler.plotting.Row
 
getColumnClass(int) - Method in class org.kepler.workflowrunmanager.gui.WorkflowRunManagerTableModel
 
getColumnCount() - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Returns the number of columns in the form.
getColumnCount() - Method in class com.jgoodies.forms.layout.FormLayout
Returns the number of columns in this layout.
getColumnCount() - Method in class org.ecoinformatics.seek.ecogrid.ServicesDisplayTableModel
Get the number of column
getColumnCount() - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelAdv
Returns the number of columns
getColumnCount() - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelBase
Returns the number of columns
getColumnCount() - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelStd
Returns the number of columns
getColumnCount() - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableOverviewModel
Returns the number of columns
getColumnCount() - Method in class org.kepler.gui.ComponentLibraryPreferencesTab.ComponentSourceTableModel
 
getColumnCount() - Static method in class org.kepler.plotting.Row
 
getColumnCount(Token) - Static method in class org.kepler.reporting.rio.util.TokenUtil
 
getColumnCount() - Method in class org.kepler.workflowrunmanager.gui.WorkflowRunManagerTableModel
 
getColumnCount() - Method in class org.kepler.workflowrunmanager.WRMDefaults
 
getColumnCount() - Method in class org.kepler.workflowscheduler.gui.configurationwizard.KnownWorkflowRunEngineTableModel
Get the number of column
getColumnCount() - Method in class org.kepler.workflowscheduler.gui.ScheduleTableModel
Get the number of column
getColumnCount() - Method in class org.mlc.swing.layout.ContainerLayout
 
getColumnCount() - Method in class ptolemy.actor.gui.ArrayOfRecordsPane.ArrayAsTable
Get the column count of the Matrix.
getColumnCount() - Method in class ptolemy.data.BooleanMatrixToken
Return the number of columns in the matrix.
getColumnCount() - Method in class ptolemy.data.ComplexMatrixToken
Return the number of columns in the matrix.
getColumnCount() - Method in class ptolemy.data.DoubleMatrixToken
Return the number of columns in the matrix.
getColumnCount() - Method in class ptolemy.data.expr.ASTPtMatrixConstructNode
 
getColumnCount() - Method in class ptolemy.data.expr.ConcreteMatrixToken
Return the number of columns of the contained matrix.
getColumnCount() - Method in class ptolemy.data.FixMatrixToken
Return the number of columns in the matrix.
getColumnCount() - Method in class ptolemy.data.IntMatrixToken
Return the number of columns in the matrix.
getColumnCount() - Method in class ptolemy.data.LongMatrixToken
Return the number of columns in the matrix.
getColumnCount() - Method in class ptolemy.data.MatrixToken
Return the number of columns of the matrix.
getColumnDefinition(Column) - Method in class org.kepler.util.sql.DatabaseType
Get the SQL definition of a column.
getColumnDefinition(Column, boolean) - Method in class org.kepler.util.sql.DatabaseType
Get the SQL definition of a column.
getColumnGroup(int) - Method in class org.kepler.workflowrunmanager.gui.GroupableTableColumnModel
Returns a ColumnGroup specified by an index.
getColumnGroups() - Method in class com.jgoodies.forms.layout.FormLayout
Returns a deep copy of the column groups.
getColumnGroups(TableColumn, Vector<ColumnGroup>) - Method in class org.kepler.workflowrunmanager.gui.ColumnGroup
Get the ColumnGroup list containing the required table column.
getColumnGroups(TableColumn) - Method in class org.kepler.workflowrunmanager.gui.GroupableTableColumnModel
Provides an iterator for accessing the ColumnGroups associated with a column.
getColumnIncrementSign() - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Returns the sign (-1 or 1) used to increment the cursor's column when moving to the next column.
getColumnName(int) - Method in class org.ecoinformatics.seek.ecogrid.ServicesDisplayTableModel
Get the header for given column number
getColumnName(int) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelAdv
Get the column name
getColumnName(int) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelBase
Get the column name
getColumnName(int) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelStd
Get the column name
getColumnName(int) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableOverviewModel
Get the column name
getColumnName(int) - Method in class org.kepler.gui.ComponentLibraryPreferencesTab.ComponentSourceTableModel
 
getColumnName(int) - Static method in class org.kepler.plotting.Row
 
getColumnName(String) - Method in class org.kepler.util.sql.DatabaseType
Adjust the name of a column.
getColumnName(String) - Method in class org.kepler.util.sql.HSQL
Adjust the name of a column.
getColumnName(String) - Method in class org.kepler.util.sql.Oracle
Adjust the name of a column.
getColumnName(String) - Method in class org.kepler.util.sql.PostgreSQL
Adjust the name of a column.
getColumnName() - Method in class org.kepler.util.sql.Table.ColumnConstraint
 
getColumnName(int) - Method in class org.kepler.workflowscheduler.gui.configurationwizard.KnownWorkflowRunEngineTableModel
Get the column name
getColumnName(int) - Method in class org.kepler.workflowscheduler.gui.ScheduleTableModel
Get the column name
getColumnName(int) - Method in class ptolemy.actor.gui.ArrayOfRecordsPane.ArrayAsTable
Get the name of the specified column, which is the column index as a string.
getColumnNames(String) - Method in class org.kepler.util.sql.DatabaseType
Adjust the name of multiple (comma-separated) columns.
getColumnNumber() - Method in class com.microstar.xml.driver.SAXDriver
 
getColumnNumber() - Method in class com.microstar.xml.XmlParser
Return the current column number.
getColumns() - Method in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource
Accessor to _columns member.
getColumns() - Method in class org.kepler.reporting.rio.ReportSection
 
getColumnSize(String, String) - Method in class org.kepler.util.sql.DatabaseType
Get the size of a column in a table.
getColumnSpec(int) - Method in class com.jgoodies.forms.layout.FormLayout
Returns the ColumnSpec at the specified column index.
getColumnSpec(int) - Method in class org.mlc.swing.layout.ContainerLayout
 
getColumnSpecs() - Method in class org.mlc.swing.layout.ContainerLayout
 
getColumnSpecsString() - Method in class org.mlc.swing.layout.ContainerLayout
 
getColumnToken(String, int) - Method in class com.numericsolutions.geomodeltools.invdist_power_isosearch2d
utility method that returns a column value from a string that contains multiple tokens
getCombinedPairList(List<NameValuePair>) - Method in class org.kepler.actor.rest.RESTService
 
getComboBox() - Method in class org.kepler.tagging.gui.TagBarInsertionUI
 
getComment() - Method in class org.kepler.sms.NamedOntClass
 
getComment() - Method in class org.kepler.sms.NamedOntProperty
 
getCommon() - Method in class org.kepler.tagging.util.SetChange
 
getCommunicationAspects() - Method in class ptolemy.actor.IOPort
Return the list of communication aspects in this port.
getComparator() - Method in class ptolemy.actor.util.TotallyOrderedSet
Return the comparator.
getCompleteText() - Method in class org.kepler.workflowrunmanager.DurationQueryParse
 
getCompleteText() - Method in class org.kepler.workflowrunmanager.ExecIdQueryParse
 
getCompleteText() - Method in class org.kepler.workflowrunmanager.StartTimeQueryParse
 
getCompletionDate() - Method in class org.geon.LidarJobConfig
 
getComponent() - Method in class org.kepler.objectmanager.repository.EcogridRepositoryResults
return the instantiated
getComponent(Object) - Static method in class org.kepler.reporting.rio.RIORenderer
Deprecated.
 
getComponent() - Method in class ptolemy.actor.gui.properties.GUIProperty
Return the Swing component.
getComponentByName(String) - Method in class org.mlc.swing.layout.ContainerLayout
Returns the component with the given name or null if not found
getComponentConstraints(Component) - Method in class org.mlc.swing.layout.ContainerLayout
 
getComponentDef(String, Map<String, Object>) - Method in class org.mlc.swing.layout.ButtonBarComponentBuilder
 
getComponentDef(String, Map<String, Object>) - Method in interface org.mlc.swing.layout.ComponentBuilder
 
getComponentDef(String) - Method in class org.mlc.swing.layout.ContainerLayout
 
getComponentDef(String, Map<String, Object>) - Method in class org.mlc.swing.layout.DefaultComponentBuilder
 
getComponentDef(String, Map<String, Object>) - Method in class org.mlc.swing.layout.JListComponentBuilder
 
getComponentDef(String, Map<String, Object>) - Method in class org.mlc.swing.layout.JTableComponentBuilder
 
getComponentDef(String, Map<String, Object>) - Method in class org.mlc.swing.layout.JToolBarComponentBuilder
 
getComponentDef(String, Map<String, Object>) - Method in class org.mlc.swing.layout.JTreeComponentBuilder
 
getComponentDef(String, Map<String, Object>) - Method in class org.mlc.swing.layout.SeparatorComponentBuilder
 
getComponentFactory() - Method in class com.jgoodies.forms.builder.PanelBuilder
Returns the builder's component factory.
getComponentName(Component) - Method in class org.mlc.swing.layout.ContainerLayout
 
getComponentName() - Method in class org.mlc.swing.layout.NewComponentDialog
Get the component's name
getComponentSearchTab() - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerDialog
Get the component search tab
getComponentsToNames() - Method in class org.mlc.swing.layout.ContainerLayout
 
getCompositeModel(Object) - Method in class ptolemy.vergil.actor.ActorGraphModel
Return the model for the given composite object.
getCompositeModel(Object) - Method in class ptolemy.vergil.basic.AbstractBasicGraphModel
Return the model for the given composite object.
getCompressionMethod() - Method in class org.kepler.objectmanager.data.db.Entity
Method to get compression method for distribution file
getConceptDef() - Method in class org.kepler.sms.SemanticTypeDefinition
 
getConceptId() - Method in class org.kepler.sms.NamedOntClass
 
getConceptId() - Method in class org.kepler.sms.SemanticType
return the value of the semantic type
getConceptId() - Method in class org.kepler.sms.SemanticTypeDefinition
return the value of the semantic type
getConceptIdWithLabel() - Method in class org.kepler.sms.NamedOntClass
 
getConceptName() - Method in class org.kepler.gui.NewActorFrame
get the concept name from the user input. don't call this until the actionlistener has been fired.
getConceptName() - Method in class org.kepler.gui.NewFolderFrame
get the concept name from the user input. don't call this until the actionlistener has been fired.
getConceptName(OWLClass) - Method in class org.kepler.sms.OntologyCatalog
 
getConceptName() - Method in class org.kepler.sms.SemanticType
Gets the conceptName attribute of the SemanticTypeParam object
getConceptName() - Method in class org.kepler.tagging.gui.CBItems.ConceptCBItem
 
getConceptNameWithLabel(String) - Method in class org.ecoinformatics.seek.sms.OntologyCatalog
Returns the first concept in the default onto with the given label
getConceptNameWithLabel(String) - Method in class org.kepler.sms.OntologyCatalog
Returns the first concept in the default onto with the given label
getConceptUri() - Method in class org.kepler.sms.SemanticType
 
getConceptWithLabel(String) - Method in class org.kepler.sms.OntologyCatalog
 
getConfiguration() - Static method in class org.kepler.gui.TabbedDialog
 
getConfiguration() - Method in class org.mlc.swing.layout.NewComponentDialog
Get the component's <configuration> section.
getConfiguration() - Method in class ptolemy.actor.gui.TableauFrame
Get the configuration at the top level of the hierarchy.
getConfiguration() - Method in class ptolemy.vergil.actor.DocViewer
Get the configuration specified in the constructor.
getConfiguration() - Method in class ptolemy.vergil.basic.BasicGraphController
Return the configuration that has been specified by setConfiguration(), or null if none.
getConfigure(String) - Method in class org.mlc.swing.layout.ComponentDef
 
getConfiguredObject() - Method in class ptolemy.domains.modal.kernel.Configurer
Get the object that this configurer configures.
getConfigureMenuFactory() - Method in class ptolemy.vergil.basic.BasicGraphController
Return the configuration menu factory.
getConfigureMenuFactory() - Method in class ptolemy.vergil.basic.ParameterizedNodeController
Return the configuration menu factory.
getConfigurer() - Method in interface ptolemy.domains.modal.kernel.ConfigurableEntity
Get the Configurer object for this entity.
getConfigurer() - Method in class ptolemy.domains.modal.kernel.State
Get the Configurer object for this entity.
getConfigureSource() - Method in class ptolemy.actor.gui.properties.ActionGUIProperty
Return the input source that was specified the last time the configure method was called.
getConfigureSource() - Method in class ptolemy.actor.gui.properties.GUIAction
Return the input source that was specified the last time the configure method was called.
getConfigureSource() - Method in class ptolemy.actor.gui.TableauFactory
Return the input source that was specified the last time the configure method was called.
getConfigureSource() - Method in class ptolemy.actor.LazyTypedCompositeActor
Return the input source that was specified the last time the configure method was called.
getConfigureSource() - Method in class ptolemy.actor.lib.Discard
Return null because this actor is not actually configurable.
getConfigureSource() - Method in class ptolemy.actor.lib.gui.PlotterBase
Return the input source that was specified the last time the configure method was called.
getConfigureSource() - Method in class ptolemy.domains.modal.kernel.State
Return the input source that was specified the last time the configure method was called.
getConfigureSource() - Method in interface ptolemy.kernel.util.Configurable
Return the input source that was specified the last time the configure method was called.
getConfigureSource() - Method in class ptolemy.kernel.util.ConfigurableAttribute
Return the source specified in the most recent call to the configure() method, or null if none.
getConfigureSource() - Method in class ptolemy.moml.EntityLibrary
Return the input source that was specified the last time the configure method was called.
getConfigureSource() - Method in class ptolemy.moml.MoMLModelAttribute
Return the input source that was specified the last time the configure method was called.
getConfigureSource() - Method in class ptolemy.vergil.basic.KeplerDocumentationAttribute
Get the configuration source.
getConfigureText() - Method in class ptolemy.actor.gui.properties.ActionGUIProperty
Return the text string that represents the current configuration of this object.
getConfigureText() - Method in class ptolemy.actor.gui.properties.GUIAction
Return the text string that represents the current configuration of this object.
getConfigureText() - Method in class ptolemy.actor.gui.TableauFactory
Return the text string that represents the current configuration of this object.
getConfigureText() - Method in class ptolemy.actor.LazyTypedCompositeActor
Return the text string that represents the current configuration of this object.
getConfigureText() - Method in class ptolemy.actor.lib.Discard
Return null because this actor is not actually configurable.
getConfigureText() - Method in class ptolemy.actor.lib.gui.PlotterBase
Return the text string that represents the current configuration of this object.
getConfigureText() - Method in class ptolemy.domains.modal.kernel.State
Return the text string that represents the current configuration of this object.
getConfigureText() - Method in interface ptolemy.kernel.util.Configurable
Return the text string that represents the current configuration of this object.
getConfigureText() - Method in class ptolemy.kernel.util.ConfigurableAttribute
Return the text specified in the most recent call to the configure() method, or null if none.
getConfigureText() - Method in class ptolemy.moml.EntityLibrary
Return the text string that represents the current configuration of this object.
getConfigureText() - Method in class ptolemy.moml.MoMLModelAttribute
Return the MoML description of the model, if there is one, and null otherwise.
getConfigureText() - Method in class ptolemy.vergil.basic.KeplerDocumentationAttribute
Get the configuration text.
getConnected() - Method in class ptolemy.plot.Plot
Return whether the default is to connect subsequent points with a line.
getConnected() - Method in interface ptolemy.plot.PlotInterface
Return whether the default is to connect subsequent points with a line.
getConnectedDatabaseType(ConfigurationProperty) - Static method in class org.kepler.util.sql.DatabaseFactory
Connect to a database from a ConfigurationProperty.
getConnectedDatabaseType(Map<String, String>, String) - Static method in class org.kepler.util.sql.DatabaseFactory
Get a connected database from connection parameters.
getConnection() - Method in class org.geon.DatabaseAccessor
Get the database connection.
getConnection(RecordToken) - Static method in class org.geon.OpenDBConnection
Get a JDBC Connection from a database parameter token.
getConnection() - Method in class org.kepler.actor.database.DatabaseTableCreator
Get the database connection.
getConnection() - Method in class org.kepler.dataproxy.datasource.geon.GEONDatabaseResource
Get the database connection.
getConnection() - Method in class org.kepler.util.sql.DatabaseType
Get the JDBC Connection object.
getConnectionName() - Method in class org.kepler.spark.actor.SparkConnection
Get the name used for this attribute.
getConsensus() - Method in class org.sdm.spa.actors.piw.viz.SequenceCollection
Uses the sequences to construct the consensus sequence.
getConsoleOutput() - Method in class org.ecoinformatics.seek.R.RConsole
After an R session has ended, get a String representation of the output of the R session.
getConsoleOutput() - Method in class ptolemy.actor.lib.r.RConsole
After an R session has ended, get a String representation of the output of the R session.
getConstants() - Method in class ptolemy.actor.util.GLBFunction
Return the type constants for this function, which are the type constant types for all the destination ports.
getConstantValue(Variable) - Method in class ptolemy.actor.util.ConstVariableModelAnalysis
Return the constant value of the given parameter, if the parameter is actually constant.
getConstraint(String) - Method in class org.kepler.util.sql.Table
Get a specific constraint.
getConstraints(Component) - Method in class com.jgoodies.forms.layout.FormLayout
Looks up and returns the constraints for the specified component.
getConstraints() - Method in class ptolemy.moml.unit.UnitConstraints
Get the constraints in the collection.
getConstraintValue() - Method in class org.kepler.util.sql.Table.ColumnConstraint
 
getConstVariables(NamedObj) - Method in class ptolemy.actor.util.ConstVariableModelAnalysis
Return the computed constant variables for the given container.
getConsumerReceiver() - Method in class ptolemy.actor.process.Branch
Return the consumer receiver that this branch puts data into.
getContainedLSIDs() - Method in class org.kepler.kar.KARFile
Return the LSIDs of all of the entries contained by this KARFile.
getContainedModel() - Method in class ptolemy.moml.MoMLModelAttribute
Return the contained model.
getContainedObject(String) - Method in interface ptolemy.data.expr.ContainmentExtender
Get an object with the given name within the container.
getContainedObject(String) - Method in class ptolemy.domains.modal.kernel.Configurer.ContainmentExtender
Get an object with the given name within the container.
getContainedObject(String) - Method in class ptolemy.domains.modal.kernel.ContainmentExtender
Get an object with the given name within the container.
getContainedObject(NamedObj, String) - Method in class ptolemy.kernel.util.test.TestNullNamedObj
Get an object with the specified name in the specified container.
getContainer() - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Returns the container used to build the form.
getContainer() - Method in class org.kepler.provenance.Recording
Get the container.
getContainer(ContainerLayout) - Method in class org.mlc.swing.layout.LayoutConstraintsManager
 
getContainer() - Method in class ptolemy.actor.AbstractReceiver
Return the container of this receiver, or null if there is none.
getContainer() - Method in class ptolemy.actor.IntermediateReceiver
Delegate to the internal receiver and return whatever it returns.
getContainer() - Method in class ptolemy.actor.Manager
Return the top-level composite actor for which this manager controls execution.
getContainer() - Method in interface ptolemy.actor.Receiver
Return the container of this receiver, or null if there is none.
getContainer() - Method in class ptolemy.actor.util.FIFOQueue
Return the container of the queue, or null if there is none.
getContainer() - Method in class ptolemy.domains.sdf.kernel.ArrayFIFOQueue
Return the container of the queue, or null if there is none.
getContainer() - Method in class ptolemy.kernel.ComponentEntity
Get the container entity.
getContainer() - Method in class ptolemy.kernel.ComponentRelation
Get the container entity.
getContainer() - Method in class ptolemy.kernel.Port
Get the container entity.
getContainer() - Method in class ptolemy.kernel.util.Attribute
Get the NamedObj that this Attribute is attached to.
getContainer() - Method in interface ptolemy.kernel.util.Nameable
Return the container.
getContainer() - Method in class ptolemy.kernel.util.NamedObj
Get the container.
getContainer() - Method in class ptolemy.kernel.util.Workspace
Get the container.
getContainerLayout(String) - Method in class org.mlc.swing.layout.LayoutConstraintsManager
 
getContainerOrContainerToBe() - Method in class ptolemy.vergil.icon.EditorIcon
Return the container of this object, if there is one, or if not, the container specified by setContainerToBe(), if there is one, or if not, null.
getContainers() - Method in class ptolemy.kernel.util.CrossRefList
Enumerate the containers linked to this list.
getContainingLocalRepository(File) - Method in class org.kepler.objectmanager.cache.LocalRepositoryManager
Given a file, return the local repository that it is in or null if it is not in a local repository.
getContentHandler() - Method in class com.microstar.xml.driver.SAXDriver
 
getContentHandler() - Method in class org.kepler.reporting.rio.fop.tools.AbstractObjectReader
 
getContentOfType(String) - Method in class org.kepler.kar.KARFile
Return an array of lsids of a certain type from within this kar. if the type is null return all of the lsids
getContentSize() - Method in class ptolemy.gui.Top
Return the size of the contents of this window.
getContentSize() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Return the size of the contents of this window.
getContext() - Method in class org.kepler.spark.actor.SparkConnection
Get the context using the parameters of this SparkConnection (serverName, driverMemory, numLocalWorkers, etc.).
getContext(String, int, String, String) - Static method in class org.kepler.spark.actor.SparkConnection
Get the context for a specific master.
getContext() - Method in class ptolemy.actor.lib.SetVariable
Return the change context being made explicit.
getContext() - Method in interface ptolemy.actor.util.ExplicitChangeContext
Return the change context being made explicit.
getContext() - Method in class ptolemy.domains.modal.kernel.FSMActor
Return the change context being made explicit.
getContext() - Method in class ptolemy.domains.modal.kernel.FSMDirector
Return the explicit change context.
getContext() - Method in class ptolemy.domains.sdf.lib.VariableLattice
Return the change context being made explicit.
getContext() - Method in class ptolemy.domains.sdf.lib.VariableRecursiveLattice
Return the change context being made explicit.
getContext() - Static method in class ptolemy.gui.UndeferredGraphicalMessageHandler
Get the component set by a call to setContext(), or null if none.
getContext() - Method in class ptolemy.kernel.undo.RedoChangeRequest
Return the context specified in the constructor, or null if none was specified.
getContext() - Method in class ptolemy.kernel.undo.UndoChangeRequest
Return the context specified in the constructor, or null if none was specified.
getContext() - Method in class ptolemy.moml.MoMLChangeRequest
Return the context specified in the constructor, or null if none was specified.
getController() - Method in class ptolemy.domains.modal.kernel.FSMDirector
Return the mode controller of this director.
getController() - Method in class ptolemy.domains.modal.modal.ModalModel
Get the FSM controller.
getController() - Method in class ptolemy.vergil.toolbox.PtolemyMenuFactory
Return the graph controller that created this menu factory.
getControllerInstance(GraphController) - Method in interface ptolemy.vergil.actor.ActorInteractionAddon
Get an instance of the ActorController for a given actor.
getControllerInstance(GraphController, boolean) - Method in interface ptolemy.vergil.actor.ActorInteractionAddon
Get an instance of the ActorController for a given actor.
getConversion() - Method in class org.kepler.sms.actors.SimpleMergeConversion
 
getConversion() - Method in class org.kepler.sms.actors.SimpleMergeMapping
 
getConversions() - Method in class ptolemy.data.expr.CachedMethod
Return the conversions the are applied to the arguments of this function or method.
getCount() - Method in class ptolemy.actor.lib.Recorder
Get the total number of events seen so far.
getCounts() - Method in class ptolemy.actor.parameters.test.TestSharedParameter
Return the current counts.
getCoverage(File, CoordinateReferenceSystem) - Static method in class org.kepler.gis.util.RasterUtilities
Get a coverage for a raster file.
getCreatedDate() - Method in class org.kepler.objectmanager.cache.DataCacheObject
 
getCredential() - Method in class org.kepler.authentication.AuthenticationService
 
getCredential() - Method in class org.kepler.authentication.ProxyEntity
 
getCriteria() - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
Return the criteria
getCRS() - Method in class org.kepler.gis.util.RasterUtilities.RasterInfo
 
getCurFireId() - Method in class org.kepler.provenance.FireState
Get the current (non-rw) firing index.
getCurFireId(boolean) - Method in class org.kepler.provenance.FireState
Get the current firing index.
getCurrent() - Static method in class com.jgoodies.forms.util.LayoutStyle
Returns the current LayoutStyle.
getCurrentDirectory() - Method in class ptolemy.gui.PtFileChooser
Return the current directory.
getCurrentElement() - Method in class com.microstar.xml.XmlParser
Return the current element.
getCurrentKey() - Method in class org.kepler.bio.hadoop.input.FASTARecordReader
 
getCurrentKey() - Method in class org.kepler.hadoop.io.input.DelimitedTextRecordReader
 
getCurrentKey() - Method in class org.kepler.hadoop.io.input.DuplicatedTextRecordReader
 
getCurrentKey() - Method in class org.kepler.hadoop.io.input.FileContentRecordReader
 
getCurrentKey() - Method in class org.kepler.hadoop.io.input.FilePathRecordReader
 
getCurrentKey() - Method in class org.kepler.hadoop.io.input.MultiLineRecordReader
 
getCurrentKey() - Method in class org.kepler.hadoop.io.input.TokenRecordReader
Get the key.
GetCurrentMicrostep - Class in ptolemy.domains.de.lib
Deprecated.
Use actor.lib.GetCurrentMicrostep instead.
GetCurrentMicrostep(CompositeEntity, String) - Constructor for class ptolemy.domains.de.lib.GetCurrentMicrostep
Deprecated.
Construct an actor with the given container and name.
getCurrentModule() - Static method in class org.kepler.module.workflowschedulergui.Initialize
Get the current module
getCurrentModuleProperty() - Static method in class org.kepler.module.workflowschedulergui.Initialize
Gets the property of the current module (Sensor-view).
getCurrentRefinement() - Method in class ptolemy.actor.lib.hoc.Case
Return the current refinement, or null if prefire() has not yet been invoked.
getCurrentState() - Method in class ptolemy.domains.pn.kernel.event.PNProcessEvent
Return the current state.
getCurrentStepSize() - Method in interface ptolemy.actor.continuous.ContinuousStatefulDirector
Return the current integration step size.
getCurrentStepSize() - Method in class ptolemy.domains.continuous.kernel.ContinuousDirector
Return the current integration step size.
getCurrentTime() - Method in class ptolemy.actor.AbstractReceiver
Deprecated.
As of Ptolemy II 4.1, replaced by AbstractReceiver.getModelTime()
getCurrentTime() - Method in class ptolemy.actor.Director
Deprecated.
As of Ptolemy II 4.1, replaced by Director.getModelTime()
getCurrentTime(int) - Method in class ptolemy.actor.IOPort
Deprecated.
As Ptolemy II 4.1, replaced by IOPort.getModelTime(int).
getCurrentValue() - Method in class org.kepler.bio.hadoop.input.FASTARecordReader
 
getCurrentValue() - Method in class org.kepler.hadoop.io.input.DelimitedTextRecordReader
 
getCurrentValue() - Method in class org.kepler.hadoop.io.input.DuplicatedTextRecordReader
 
getCurrentValue() - Method in class org.kepler.hadoop.io.input.FileContentRecordReader
 
getCurrentValue() - Method in class org.kepler.hadoop.io.input.FilePathRecordReader
 
getCurrentValue() - Method in class org.kepler.hadoop.io.input.MultiLineRecordReader
 
getCurrentValue() - Method in class org.kepler.hadoop.io.input.TokenRecordReader
Get the token writable.
getCurrentValue() - Method in class org.kepler.monitor.figure.ProgressBarFigure
Gets the current value associated for a determinate progress bar.
getCurrentValue() - Method in class ptolemy.actor.parameters.IntRangeParameter
Return the current value of this parameter as an integer.
getCurrSelectedItem() - Method in class org.kepler.reporting.gui.ReportDesignerPanel
 
getCustomProperties(String) - Method in class org.mlc.swing.layout.ContainerLayout
Returns custom properties for the component.
getData(String) - Method in class org.ecoinformatics.seek.sms.KeplerLocalLSIDService
 
getData() - Method in class org.kepler.hadoop.io.TaggedValue
 
getData() - Method in class org.kepler.objectmanager.cache.BufferedDataCacheObject
Returns the data as a byte array
getData() - Static method in class ptolemy.domains.pn.kernel.test.TestSink
 
getData(int) - Method in class ptolemy.plot.EditablePlot
Get the data in the specified dataset.
getDataAsStream() - Method in class org.kepler.objectmanager.cache.RawDataCacheObject
return the data as a stream
getDatabaseSchemaName() - Static method in class org.kepler.objectmanager.cache.CacheManager
Get the name of the cache database schema.
getDataCacheObject() - Method in class org.kepler.objectmanager.data.db.Entity
Method to get data cache item associated with this entity
getDataFormatArray() - Method in class org.kepler.objectmanager.data.db.Entity
Get the complex data format array
getDataInputStream() - Method in class org.kepler.objectmanager.cache.DataCacheObject
Return the data as an InputStream.
getDataItemFromEcoGrid(String, String) - Method in class org.ecoinformatics.seek.datasource.EcogridDataCacheItem
Gets the dataItemFromEcoGrid attribute of the DataCacheObject object
getDataPort() - Method in class org.kepler.plotting.Row
 
getDataset() - Method in class org.kepler.plotting.Plot
 
getDataStream() - Method in class org.kepler.objectmanager.data.text.TextComplexFormatDataReader
 
getDataType() - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
Gets the dataType
getDataType() - Method in class org.ecoinformatics.seek.querybuilder.DBTableField
Return the datatype
getDataType() - Method in class org.kepler.objectmanager.data.DataObjectDescription
Return the data type for this data item.
getDataType() - Method in class org.kepler.objectmanager.data.DateTimeDomain
Method to get data type for this domaim
getDataType() - Method in interface org.kepler.objectmanager.data.db.DSTableFieldIFace
Passes back one or more types in human readable string may want to change this to an array of type or a vector
getDataType() - Method in class org.kepler.objectmanager.data.db.DSTableKeyDef
Passes back one or more types in human readable string may want to change this to an array of type or a vector
getDataType() - Method in interface org.kepler.objectmanager.data.Domain
Method to get DataType
getDataType() - Method in class org.kepler.objectmanager.data.EnumeratedDomain
Method to get data type
getDataType() - Method in class org.kepler.objectmanager.data.NumericDomain
Method to get data type
getDataType() - Method in class org.kepler.objectmanager.data.text.TextDomain
Method to get DataType
getDataTypes() - Method in class org.kepler.objectmanager.data.DataTypeResolver
returns an array of the data types defined in the config.xml file
getDataURI() - Method in class org.kepler.gis.actor.pylaski.PylaskiUtilities.Settings
Generates the REST URI for retrieving past and present observable data.
getDataurl() - Method in class ptolemy.plot.PlotBox
Deprecated.
Use read() instead.
getDataurl() - Method in interface ptolemy.plot.PlotBoxInterface
Deprecated.
Use read() instead.
getDate() - Method in class org.kepler.io.FileInfo
 
getDateChanged() - Method in class org.kepler.objectmanager.cache.CacheContent
 
getDateTimePrecision() - Method in class org.kepler.objectmanager.data.DateTimeDomain
 
getDateTimeRenderer() - Static method in class org.kepler.workflowrunmanager.gui.FormatRenderer
 
getDay() - Method in class ptolemy.data.DateToken
Get the date of the month part of this date.
getDayOfWeek() - Method in class ptolemy.data.DateToken
Get the day of week.
getDBConnection() - Static method in class org.kepler.util.sql.DatabaseFactory
Convenience method to get connection to default kepler DB, which is currently HSQL.
getDBParamsType() - Static method in class org.geon.OpenDBConnection
Get the type of database parameter token.
getDBTableName() - Method in class org.kepler.objectmanager.data.db.Entity
 
getDeadline(NamedObj, Time) - Method in class ptolemy.actor.Director
Compute the deadline for an actor firing.
getDebuggable() - Method in class ptolemy.actor.gui.DebugListenerTableau
Return the object that this tableau is listening to, or null if none has been set.
getDebugProfile(Executable) - Method in class ptolemy.vergil.debugger.DebugController
Get the profile for an actor that is being debugged.
getDeclaration(String, Map<String, Object>) - Method in class org.mlc.swing.layout.ButtonBarComponentBuilder
 
getDeclaration(String, Map<String, Object>) - Method in interface org.mlc.swing.layout.ComponentBuilder
Returns the appropriate declaration suitable for this component
getDeclaration(String, Map<String, Object>) - Method in class org.mlc.swing.layout.DefaultComponentBuilder
 
getDeclaration(String, Map<String, Object>) - Method in class org.mlc.swing.layout.JListComponentBuilder
 
getDeclaration(String, Map<String, Object>) - Method in class org.mlc.swing.layout.JTableComponentBuilder
 
getDeclaration(String, Map<String, Object>) - Method in class org.mlc.swing.layout.JToolBarComponentBuilder
 
getDeclaration(String, Map<String, Object>) - Method in class org.mlc.swing.layout.JTreeComponentBuilder
 
getDeclaration(String, Map<String, Object>) - Method in class org.mlc.swing.layout.SeparatorComponentBuilder
 
getDeclarations(String) - Method in class org.mlc.swing.layout.ComponentDef
 
getDeclarations() - Method in class org.mlc.swing.layout.NewComponentDialog
Get the component's <declarations> section.
getDeclaredElementType() - Method in class ptolemy.data.type.ArrayType
Return the declared type of the array elements.
getDeclaredType() - Method in class ptolemy.data.expr.Variable
If setTypeEquals() has been called, then return the type specified there.
getDecorator() - Method in class ptolemy.kernel.util.DecoratorAttributes
Return the decorator that is responsible for this DecoratorAttributes instance.
getDecorator() - Method in class ptolemy.vergil.kernel.AnimationRenderer
Get the prototype decorator.
getDecoratorAttribute(Decorator, String) - Method in class ptolemy.kernel.util.NamedObj
Return the decorator attribute with the specified name for the specified decorator, or null the specified decorator provides no attribute with the specified name or the decorator does not decorate this object.
getDecoratorAttributes(Decorator) - Method in class ptolemy.kernel.util.NamedObj
Return the decorated attributes of this NamedObj, as decorated by the specified decorator.
getDefault(String) - Method in class org.kepler.workflowrunmanager.WRMDefaults
 
getDefaultAlignment() - Method in class com.jgoodies.forms.layout.FormSpec
Returns the default alignment.
getDefaultButtonHeight() - Method in class com.jgoodies.forms.util.LayoutStyle
Returns this style's default button height.
getDefaultButtonWidth() - Method in class com.jgoodies.forms.util.LayoutStyle
Returns this style's default button width.
getDefaultClassLoadingStrategy() - Static method in class ptolemy.moml.MoMLParser
Get the the current static _defaultClassLoadingStrategy instance.
getDefaultColIndex(String) - Method in class org.kepler.workflowrunmanager.WRMDefaults
 
getDefaultColor() - Static method in class org.kepler.sms.Color
 
getDefaultConceptNames() - Method in class org.ecoinformatics.seek.sms.AnnotationEngine
Not Implemented.
getDefaultContext() - Static method in class org.kepler.spark.actor.SparkConnection
Get the default context.
getDefaultDependency() - Method in interface ptolemy.actor.util.CausalityInterface
Return the default dependency.
getDefaultDependency() - Method in class ptolemy.actor.util.DefaultCausalityInterface
Return the default dependency specified in the constructor.
getDefaultDialogFont() - Method in class com.jgoodies.forms.util.DefaultUnitConverter
Lazily creates and returns the dialog font used to compute the dialog base units.
getDefaultDirectory() - Method in class org.kepler.objectmanager.cache.LocalRepositoryManager.LocalRepository
Get the default directory.
getDefaultExpression() - Method in class org.kepler.moml.DependencyAttribute
returns the default expression which is null
getDefaultExpression() - Method in class org.kepler.moml.NamedObjId
returns the default expression which is null
getDefaultExpression() - Method in class org.kepler.moml.PortAttribute
returns the default expression which is null
getDefaultExpression() - Method in class org.kepler.sms.KeplerIOPortReference
Return the default expression which is null
getDefaultExpression() - Method in class org.kepler.sms.KeplerVirtualIOPortReference
Return the default expression which is null
getDefaultExpression() - Method in class org.kepler.sms.SemanticProperty
returns the default expression which is null
getDefaultExpression() - Method in class org.kepler.sms.SemanticTypeDefinition
returns the default expression which is null
getDefaultExpression() - Method in class ptolemy.kernel.util.AbstractSettableAttribute
Return the default value of this Settable, or null if no default has been set.
getDefaultExpression() - Method in class ptolemy.kernel.util.ConfigurableAttribute
Return the default value of this Settable, if there is one.
getDefaultExpression() - Method in class ptolemy.kernel.util.Location
Return the default value of this Settable, if there is one.
getDefaultExpression() - Method in interface ptolemy.kernel.util.Settable
Return the default value of this attribute, if there is one, or null if there is none.
getDefaultExpression() - Method in class ptolemy.vergil.actor.LayoutHint
A LayoutHint has no default expression.
getDefaultExpression() - Method in class ptolemy.vergil.actor.lib.MonitorReceiverAttribute
Return the default value of this attribute, if there is one, or null if there is none.
getDefaultExpression() - Method in class ptolemy.vergil.kernel.attributes.AttributeValueAttribute
Return the default value of this attribute, if there is one, or null if there is none.
getDefaultFileName() - Method in class org.kepler.gui.kar.ExportArchiveAction
Get default KAR save filename.
getDefaultMasterSocketAddress() - Static method in class org.kepler.spark.actor.SparkConnection
Get the default Spark master socket address.
getDefaultOntology() - Method in class org.ecoinformatics.seek.sms.OntologyCatalog
Returns the default ontology model for the actor library.
getDefaultOntology() - Method in class org.kepler.sms.OntologyCatalog
Returns the default ontology model for the actor library.
getDefaultPort() - Method in class org.sdm.spa.actors.transport.BbcpCopier
 
getDefaultPort() - Method in class org.sdm.spa.actors.transport.FileCopierBase
default port for the file transfer protocol.
getDefaultPort() - Method in class org.sdm.spa.actors.transport.LocalFileCopier
 
getDefaultPort() - Method in class org.sdm.spa.actors.transport.ScpCopier
 
getDefaultPort() - Method in class org.sdm.spa.actors.transport.SftpCopier
 
getDefaultPort() - Method in class org.sdm.spa.actors.transport.SrmliteCopier
 
getDefaultProvenanceRecorder(NamedObj) - Static method in class org.kepler.provenance.ProvenanceRecorder
Get the provenance recorder with for a NamedObj.
getDefaultProvenanceStore() - Method in class org.kepler.workflowrunmanager.WRMDefaults
 
getDefaultQueryable(NamedObj) - Static method in class org.kepler.provenance.ProvenanceRecorder
Get a queryable from the default provenance recorder for a NamedObj.
getDefaultResolution() - Static method in class ptolemy.vergil.toolbox.SnapConstraint
Return the default resolution.
getDefaultScreenResolution() - Method in class com.jgoodies.forms.util.AbstractUnitConverter
Computes and returns the default resolution.
getDefaultSearchStringForColIndex(int) - Method in class org.kepler.workflowrunmanager.WRMDefaults
 
getDefaultsMap() - Static method in class org.kepler.provenance.ProvenanceRecorder
Return a Map of the default settings.
getDefaultSpacer() - Static method in class org.kepler.gui.WidgetFactory
create a non-opaque JLabel containing the given displayText, with the minimumSize and preferredSize set to the PrefMinDims Dimension
getDefaultTimeStr() - Method in class org.kepler.util.sql.DatabaseType
Get a string representing the default time.
getDefaultTimeStr() - Method in class org.kepler.util.sql.HSQL
Get a string representing the default time.
getDefaultTimeStr() - Method in class org.kepler.util.sql.Oracle
Get a string representing the default time.
getDefaultTimeStr() - Method in class org.kepler.util.sql.PostgreSQL
Get a string representing the default time.
getDefaultValue() - Method in class org.kepler.util.sql.Column
Get the default value.
getDefaultWidth() - Method in class ptolemy.actor.IOPort
Get the default width.
getDeferredToParent(NamedObj) - Static method in class ptolemy.moml.MoMLChangeRequest
Deprecated.
No longer needed; just use the specified object as a context.
getDefinition() - Method in class org.kepler.objectmanager.data.DataObjectDescription
Return the definition for this data item.
getDefinition() - Method in class org.kepler.objectmanager.data.text.TextDomain
 
getDegreeOfParallelism() - Method in class org.kepler.ddp.actor.pattern.AtomicPatternActor
Get the number of parallel instances to execute.
getDegreeOfParallelism() - Method in interface org.kepler.ddp.actor.pattern.DDPPatternActor
Get the number of parallel instances to execute.
getDegreeOfParallelism() - Method in class org.kepler.ddp.actor.pattern.SingleInputPatternActor
Get the number of parallel instances to execute.
getDeleteCmd(String) - Method in class org.kepler.job.JobSupportCondor
Get the command to remove a job from queue (either running or waiting jobs). return: the String of command
getDeleteCmd(String) - Method in class org.kepler.job.JobSupportFork
Get the command to remove a job (kill the process) return: the String of command
getDeleteCmd(String) - Method in class org.kepler.job.JobSupportLoadLeveler
Get the command to remove a job from queue (either running or waiting jobs). return: the String of command
getDeleteCmd(String) - Method in class org.kepler.job.JobSupportLSF
Get the command to remove a job from queue (either running or waiting jobs). return: the String of command
getDeleteCmd(String) - Method in class org.kepler.job.JobSupportMoab
 
getDeleteCmd(String) - Method in class org.kepler.job.JobSupportNCCS
Get the command to remove a job from queue (either running or waiting jobs). return: the String of command
getDeleteCmd(String) - Method in class org.kepler.job.JobSupportPBS
Get the command to remove a job from queue (either running or waiting jobs). return: the String of command
getDeleteCmd(String) - Method in class org.kepler.job.JobSupportSGE
Get the command to remove a job from queue (either running or waiting jobs). return: the String of command
getDeleteCmd(String) - Method in class org.kepler.job.JobSupportSLURM
Get the command to remove a job from queue (either running or waiting jobs). return: the String of command
getDeleteEdgeMoML(Object) - Method in class ptolemy.vergil.actor.ActorGraphModel
Return a MoML String that will delete the given edge from the Ptolemy model.
getDeleteEdgeMoML(Object) - Method in class ptolemy.vergil.actor.ActorGraphModel.LinkModel
Return a MoML String that will delete the given edge from the Ptolemy model.
getDeleteEdgeMoML(Object) - Method in class ptolemy.vergil.basic.AbstractBasicGraphModel
Return a MoML String that will delete the given edge from the Ptolemy model.
getDeleteEdgeMoML(Object) - Method in class ptolemy.vergil.modal.FSMGraphModel.ArcModel
Return a MoML String that will delete the given edge from the Ptolemy model.
getDeleteEdgeMoML(Object) - Method in class ptolemy.vergil.modal.FSMGraphModel
Return a MoML String that will delete the given edge from the Ptolemy model.
getDeleteNodeMoML(Object) - Method in class ptolemy.vergil.actor.ActorGraphModel.ExternalPortModel
Return a MoML String that will delete the given node from the Ptolemy model.
getDeleteNodeMoML(Object) - Method in class ptolemy.vergil.actor.ActorGraphModel
Return a MoML String that will delete the given node from the Ptolemy model.
getDeleteNodeMoML(Object) - Method in class ptolemy.vergil.actor.ActorGraphModel.IconModel
Return a MoML String that will delete the given node from the Ptolemy model.
getDeleteNodeMoML(Object) - Method in class ptolemy.vergil.actor.ActorGraphModel.PortModel
Return a MoML String that will delete the given node from the Ptolemy model.
getDeleteNodeMoML(Object) - Method in class ptolemy.vergil.actor.ActorGraphModel.VertexModel
Return a MoML String that will delete the given node from the Ptolemy model.
getDeleteNodeMoML(Object) - Method in class ptolemy.vergil.basic.AbstractBasicGraphModel
Return a MoML String that will delete the given node from the Ptolemy model.
getDeleteNodeMoML(Object) - Method in class ptolemy.vergil.basic.NamedObjNodeModel
Return a MoML String that will delete the given node from the Ptolemy model.
getDeleteNodeMoML(Object) - Method in class ptolemy.vergil.kernel.AttributeNodeModel
Return a MoML String that will delete the given node from the Ptolemy model.
getDeleteNodeMoML(Object) - Method in class ptolemy.vergil.modal.FSMGraphModel
Return a MoML String that will delete the given node from the Ptolemy model.
getDeleteNodeMoML(Object) - Method in class ptolemy.vergil.modal.FSMGraphModel.PortModel
Return a MoML String that will delete the given node from the Ptolemy model.
getDeleteNodeMoML(Object) - Method in class ptolemy.vergil.modal.FSMGraphModel.StateModel
Return a MoML String that will delete the given node from the Ptolemy model.
getDelimiter() - Method in class org.kepler.bio.stratosphere.input.FASTAInputFormat
Gets the delimiter that defines the record boundaries.
getDelimiter() - Method in class org.kepler.bio.stratosphere.input.FASTAInputFormatBySize
Gets the delimiter that defines the record boundaries.
getDelimiter() - Method in class org.kepler.objectmanager.data.db.Entity
get the delimiter used with this entity
getDenominator() - Method in class ptolemy.math.Fraction
Return the denominator of this fraction.
getDependencies() - Method in class org.kepler.kar.KARCacheError
 
getDependencies() - Method in class org.kepler.objectmanager.ActorMetadata
return a vector of the ids of the semantic type reference
getDependency(IOPort, IOPort) - Method in class ptolemy.actor.util.BreakCausalityInterface
Return the dependency between the specified input port and the specified output port.
getDependency(IOPort, IOPort) - Method in interface ptolemy.actor.util.CausalityInterface
Return the dependency between the specified input port and the specified output port.
getDependency(IOPort, IOPort) - Method in class ptolemy.actor.util.CausalityInterfaceForComposites
Return the dependency between the specified input port and the specified output port.
getDependency(IOPort, IOPort) - Method in class ptolemy.actor.util.DefaultCausalityInterface
Return the dependency between the specified input port and the specified output port.
getDependency(IOPort, IOPort) - Method in class ptolemy.domains.modal.kernel.FSMCausalityInterface
Return the dependency between the specified input port and the specified output port.
getDependency(IOPort, IOPort) - Method in class ptolemy.domains.modal.modal.MirrorCausalityInterface
Return the dependency between the specified input port and the specified output port.
getDependencyGraph() - Method in class ptolemy.actor.util.ConstVariableModelAnalysis
Return the parameter dependency graph constructed through this analysis.
getDependentJobs() - Method in class org.kepler.job.Job
Get a set of jobs that must successfully complete before this job can start.
getDependents() - Method in class ptolemy.actor.util.DependencyDeclaration
Return the list of dependents of the parameter that contains this attribute.
getDependsOn() - Method in class org.kepler.kar.karxml.KarXml.KarEntry
 
getDependsOnModule() - Method in class org.kepler.kar.karxml.KarXml.KarEntry
 
getDepth() - Method in interface org.ecoinformatics.seek.querybuilder.DBWhereIFace
Return its depth in the tree
getDepth() - Method in class org.ecoinformatics.seek.querybuilder.DBWhereListCellBase
Returns the depth
getDepthOfActor(Actor) - Method in class ptolemy.actor.util.CausalityInterfaceForComposites
Return the depth of an actor contained (deeply) by the associated composite actor.
getDepthOfPort(IOPort) - Method in class ptolemy.actor.util.CausalityInterfaceForComposites
Return the depth of a port of the associated actor or an actor contained by it.
getDerivative() - Method in class ptolemy.domains.continuous.kernel.ContinuousIntegrator
Get the current value of the derivative input port.
getDerivedLevel() - Method in interface ptolemy.kernel.util.Derivable
Get the minimum level above this object in the hierarchy where a parent-child relationship implies the existence of this object.
getDerivedLevel() - Method in class ptolemy.kernel.util.NamedObj
Get the minimum level above this object in the hierarchy where a parent-child relationship implies the existence of this object.
getDerivedList() - Method in interface ptolemy.kernel.util.Derivable
Return a list of objects derived from this one.
getDerivedList() - Method in class ptolemy.kernel.util.NamedObj
Return a list of objects derived from this one.
getDescription() - Method in class org.ecoinformatics.seek.ecogrid.EcoGridService
 
getDescription() - Method in class org.ecoinformatics.seek.querybuilder.DBFileFilter
Returns the human readable mDescription of this filter.
getDescription() - Method in enum org.kepler.plotting.PointType
 
getDescription() - Method in class org.mlc.swing.layout.ComponentDef
 
getDescription() - Method in class ptolemy.actor.Manager.State
Get a description of the state.
getDescription() - Method in class ptolemy.gui.ExtensionFilenameFilter
 
getDescription() - Method in class ptolemy.gui.PtFilenameFilter
A description of this FilenameFilter.
getDescription() - Method in class ptolemy.kernel.util.ChangeRequest
Get the description that was specified in the constructor.
getDescription() - Method in class ptolemy.math.FixPoint.Error
Deprecated.
This functionality is obsolete.
getDescription() - Method in class ptolemy.vergil.actor.DocManager
Return the description, or null if none has been given.
getDescription() - Method in class ptolemy.vergil.basic.BasicGraphFrame.FolderFileFilter
The description of this filter.
getDescription() - Method in class ptolemy.vergil.basic.KeplerDocumentationAttribute
Return the description.
getDestination(String) - Method in class ptolemy.domains.modal.kernel.AbstractActionsAttribute
Return the destination object referred to by the given name.
getDestinationNameList() - Method in class ptolemy.domains.modal.kernel.AbstractActionsAttribute
Return the list of destination names given in expression set for this attribute.
getDestinations() - Method in class ptolemy.domains.modal.kernel.AbstractActionsAttribute
Return the list of destinations of assignments in this action.
getDestinations() - Method in class ptolemy.domains.modal.kernel.Action
Return the list of destinations of assignments in this action.
getDialogBaseUnitsX(Component) - Method in class com.jgoodies.forms.util.AbstractUnitConverter
Gets and returns the horizontal dialog base units.
getDialogBaseUnitsX(Component) - Method in class com.jgoodies.forms.util.DefaultUnitConverter
Returns the cached or computed horizontal dialog base units.
getDialogBaseUnitsY(Component) - Method in class com.jgoodies.forms.util.AbstractUnitConverter
Gets and returns the vertical dialog base units.
getDialogBaseUnitsY(Component) - Method in class com.jgoodies.forms.util.DefaultUnitConverter
Returns the cached or computed vertical dialog base units for the given component.
getDialogMarginX() - Method in class com.jgoodies.forms.util.LayoutStyle
Returns this style's horizontal margin for general dialogs.
getDialogMarginY() - Method in class com.jgoodies.forms.util.LayoutStyle
Returns this style's vertical margin for general dialogs.
getDifference() - Method in class ptolemy.domains.modal.kernel.RelationNode
Return the difference information from the current evaluation of the relation node.
getDimension(String, String, int, int) - Static method in class org.kepler.gui.StaticGUIResources
Search the uiSettings resourcebundle for the width and height specified by the widthKey and heightKey properties.
getDirection(int) - Static method in class ptolemy.vergil.actor.IOPortController
Return the direction associated with the specified angle, which is assumed to be one of {-270, -180, -90, 0, 90, 180, 270}.
getDirector() - Method in interface ptolemy.actor.Actor
Return the local director, if there is one, otherwise the executive director, if there is one, otherwise null.
getDirector() - Method in class ptolemy.actor.AtomicActor
Return the director responsible for the execution of this actor.
getDirector() - Method in class ptolemy.actor.CompositeActor
Return the director responsible for execution of the contained actors.
getDirector() - Method in class ptolemy.actor.FiringEvent
Return the director that activated the actor.
getDirector() - Method in class ptolemy.actor.process.MailboxBoundaryReceiver
Return the director in charge of this receiver, or null if there is none.
getDirector() - Method in class ptolemy.domains.continuous.lib.ContinuousTransferFunction
Return the executive director, regardless what isOpaque returns.
getDirector() - Method in class ptolemy.domains.continuous.lib.LinearStateSpace
Return the executive director, regardless what isOpaque() returns.
getDirector() - Method in class ptolemy.domains.modal.kernel.FSMActor
Return the director responsible for the execution of this actor.
getDirector() - Method in class ptolemy.domains.pn.kernel.PNQueueReceiver
Return the director in charge of this receiver, or null if there is none.
getDirectory() - Method in class ptolemy.actor.gui.Configuration
Get the model directory.
getDirectory() - Method in class ptolemy.actor.gui.TableauFrame
Get the model directory in the top level configuration.
getDisplayItem() - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
Gets the DBDisplayItemIFace object
getDisplayItem(String, String) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelStd
Retrieves the Model that represents this table, then looks up the Field (DBSelectTableModelItem) and returns the item
getDisplayName() - Method in class ptolemy.actor.parameters.LocationParameter
Return a name to present to the user, which is the same as the name returned by getName().
getDisplayName() - Method in class ptolemy.kernel.util.Location
Return a name to present to the user, which is the same as the name returned by getName().
getDisplayName() - Method in interface ptolemy.kernel.util.Nameable
Return a name to present to the user.
getDisplayName() - Method in class ptolemy.kernel.util.NamedObj
Return a name to present to the user.
getDisplayName() - Method in interface ptolemy.kernel.util.Settable
Return a name to present to the user.
getDisplayName() - Method in class ptolemy.kernel.util.Workspace
Return a name to present to the user, which is the same as what is returned by getName().
getDisplayName() - Method in class ptolemy.vergil.actor.lib.MonitorReceiverAttribute
Return a name to present to the user.
getDisplayName() - Method in class ptolemy.vergil.kernel.attributes.AttributeValueAttribute
Return a name to present to the user, which is the same as the name returned by getName().
getDisplayPane() - Method in class ptolemy.actor.gui.ModelPane
Return the container for model displays.
getDisplayRedirectDir() - Method in class org.kepler.ddp.actor.pattern.AtomicPatternActor
 
getDisplayRedirectDir() - Method in interface org.kepler.ddp.actor.pattern.DDPPatternActor
Get the dir to redirect display related actors.
getDisplayRedirectDir() - Method in class org.kepler.ddp.actor.pattern.SingleInputPatternActor
Get the dir to redirect display related actors.
getDisplayRedirectDir() - Method in class org.kepler.ddp.director.DDPDirector
Get the dir to redirect display related actors.
getDisplayRedirectDir() - Method in class org.kepler.ddp.director.DDPEngine
Get the directory to redirect display related actors.
getDisplayString(String, String) - Static method in class org.kepler.util.StaticResources
Search the uiDisplayText resourcebundle for the property specified by the key parameter.
getDisplayText() - Method in class org.ecoinformatics.seek.ecogrid.EcogridPreferencesTab
Method to get display text
getDisplayTextProperty() - Static method in class org.kepler.util.StaticResources
Search for the ResourceBundle containing the UI Display Text.
getDisplayUI() - Method in class org.kepler.tagging.gui.AutoCompleteComboBox
 
getDisplayUI() - Method in class org.kepler.tagging.gui.TagBarUI
 
getDmin() - Method in class org.geon.LidarJobConfig
 
getDoc(String) - Static method in class org.kepler.kar.KarDoclet
Retrieve the documentation for a particular class after it has been created.
getDocAttribute() - Method in class ptolemy.vergil.actor.DocEffigy
Get the DocAttribute represented by this effigy, if any.
getDocAttribute(NamedObj) - Method in class ptolemy.vergil.basic.KeplerDocumentationAttribute
Return a docAttribute with the available kepler documentation.
getDocClass() - Method in class ptolemy.vergil.basic.KeplerDocumentationAttribute
Return the document class.
getDocid() - Method in class org.kepler.objectmanager.repository.EcogridRepositoryResults
return the docid of the result
getDocName() - Method in class ptolemy.vergil.basic.KeplerDocumentationAttribute
Return the document name.
getDocument() - Method in class org.kepler.kar.karxml.KarXml
 
getDocument() - Method in class ptolemy.actor.gui.TextEffigy
Return the document that this is an effigy of.
getDocumentation() - Method in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource
Get a URL pointer to the documentation for this data source.
getDocumentation() - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.ResultRecord
 
getDocumentation() - Method in interface org.kepler.dataproxy.datasource.DataSourceInterface
Get a URL pointer to the documentation for this data source.
getDocumentation() - Method in class org.kepler.dataproxy.datasource.geon.GEONDatabaseResource
Get a URL pointer to the ADN documentation for this data source.
getDocumentation() - Method in class org.kepler.dataproxy.datasource.geon.GEONShpResource
Get a URL pointer to the ADN documentation for this data source.
getDocumentation(String) - Static method in class org.kepler.dataproxy.metadata.ADN.ADNMetadataSpecification
Returns a URL to the ADN documentation
getDocumentation(Configuration, String, Effigy) - Static method in class ptolemy.actor.gui.HTMLViewer
Give a ptdoc: path, open the PtDoc viewer.
getDocumentation(Configuration, String, Effigy) - Static method in class ptolemy.vergil.basic.GetDocumentationAction
Get the documentation for a particular class.
GetDocumentationAction - Class in ptolemy.vergil.basic
This is an action that accesses the documentation for a Ptolemy object associated with a figure.
GetDocumentationAction(int) - Constructor for class ptolemy.vergil.basic.GetDocumentationAction
Construct an instance and give a preference for whether the KeplerDocumentationAttribute or the docAttribute should be displayed if both exist.
GetDocumentationAction() - Constructor for class ptolemy.vergil.basic.GetDocumentationAction
Construct an instance of this action.
getDocumentationAttribute() - Method in class org.kepler.objectmanager.ActorMetadata
 
getDocumentationAttributeClassName() - Method in class org.kepler.gui.KeplerDocApplicationSpecializer
returns the name of the documentation attribute
getDocumentationAttributeClassName() - Method in interface ptolemy.vergil.actor.DocApplicationSpecializer
Return the class name of the attribute that this specializer uses to store documentation.
getDocumentBase() - Method in class ptolemy.plot.PlotBox
Deprecated.
Use read() instead.
getDocumentBase() - Method in interface ptolemy.plot.PlotBoxInterface
Deprecated.
Use read() instead.
getDocumentTypeList() - Method in class org.ecoinformatics.seek.ecogrid.EcoGridService
Get document type list in this service
getDomain(String) - Static method in class org.kepler.authentication.AuthenticationManager
returns a Domain for a given domainName
getDomain() - Method in class org.kepler.authentication.Domain
 
getDomain() - Static method in class org.kepler.authentication.gui.DomainSelectionGUI
return the domain
getDomain() - Method in class org.kepler.authentication.ProxyEntity
 
getDomain() - Method in class org.kepler.objectmanager.data.db.Attribute
Returns the domain.
getDomain() - Method in class org.kepler.sms.KeplerIOPortSemanticLink
 
getDomain(boolean) - Method in class org.kepler.sms.NamedOntProperty
 
getDomainInfo(int) - Method in class org.kepler.objectmanager.data.EnumeratedDomain
Method getDomainInfo. get the ith domain info item, or an empty string if i is greater than the number of items
getDomainInfoCount() - Method in class org.kepler.objectmanager.data.EnumeratedDomain
Method getDomainInfoCount. get the number of items in the info vector
getDomainList() - Method in class org.kepler.authentication.DomainList
 
getDomainName() - Method in class org.kepler.gui.AuthenticateAction
Get the selected domain name.
getDomTree() - Method in class ptolemy.data.XMLToken
Return the dom document parsed from the xml string.
getDouble(int) - Method in class org.json.JSONArray
Get the double value associated with an index.
getDouble(String) - Method in class org.json.JSONObject
Get the double value associated with a key.
getDoubleValue() - Method in class ptolemy.actor.util.Time
Return the double representation of the time value of this time object.
getDoubleValue(String) - Method in class ptolemy.gui.Query
Get the current value in the entry with the given name and return as a double value.
getDragAndDropPanelDataFlavor() - Static method in class org.kepler.reporting.gui.ReportDesignerPanel
Data Flavor for the Drag and Drop Data Transfer Handler.
getDropTarget(JGraph) - Static method in class ptolemy.vergil.basic.BasicGraphFrameExtension
Return the drop target for a JGraph.
GetDSDocumentationAction() - Constructor for class org.kepler.objectmanager.data.DataSourceInstanceController.GetDSDocumentationAction
 
getDTDHandler() - Method in class com.microstar.xml.driver.SAXDriver
 
getDTDHandler() - Method in class org.kepler.reporting.rio.fop.tools.AbstractObjectReader
 
getDuration() - Method in class org.kepler.util.WorkflowRun
Get the duration in Seconds of the WorkflowRun.
getEcoGridQuery() - Method in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreMetaDataSpecification
Method to create a ecogrid query
getEcoGridQuery() - Method in class org.ecoinformatics.seek.datasource.eml.eml2.EML2MetadataSpecification
Method to create a ecogrid query
getEcoGridQuery() - Method in class org.ecoinformatics.seek.ecogrid.MetadataSpecificationInterface
This method will transfer a query group into ecogrid query base on different namespace
getEcoGridQuery() - Method in class org.kepler.dataproxy.metadata.ADN.ADNMetadataSpecification
Method to create a ecogrid query
getEcogridRepository() - Method in class org.kepler.util.ProvenanceStore
 
getEcoGridServicesController() - Method in class org.ecoinformatics.seek.ecogrid.EcogridPreferencesTab
Method to get controller
getEdgeController(Object) - Method in class ptolemy.vergil.actor.ActorViewerGraphController
Return the edge controller appropriate for the given node, which in this case is the same link controller returned by getLinkController().
getEdgeController(Object) - Method in class ptolemy.vergil.icon.EditIconGraphController
Throw an exception.
getEdgeController(Object) - Method in class ptolemy.vergil.modal.FSMViewerGraphController
Return the edge controller appropriate for the given node.
getEdgeModel(Object) - Method in class ptolemy.vergil.actor.ActorGraphModel
Return the model for the given edge object.
getEdgeModel(Object) - Method in class ptolemy.vergil.modal.FSMGraphModel
Return the model for the given edge object.
getEditingColumn() - Method in class org.kepler.workflowrunmanager.gui.GroupableTableHeader
 
getEditor(int) - Method in class org.kepler.reporting.gui.RowEditorModel
 
getEditorComponent() - Method in class org.kepler.workflowrunmanager.gui.GroupableTableHeader
 
getEditorPanel() - Method in class org.kepler.plotting.PlotEditor
 
getEffigy(NamedObj) - Method in class ptolemy.actor.gui.Configuration
Get the effigy for the specified Ptolemy model.
getEffigy(String) - Method in class ptolemy.actor.gui.ModelDirectory
Get the effigy of the model that corresponds to the specified identifier.
getEffigy() - Method in class ptolemy.actor.gui.PtolemyFrame
Override the base class to check to see whether the effigy is still the valid one for the associated model.
getEffigy() - Method in class ptolemy.actor.gui.TableauFrame
Get the effigy for the model associated with this window.
getEffigy(NamedObj) - Method in class ptolemy.actor.gui.TableauFrame
Get the effigy for the specified Ptolemy model.
getElement(int) - Method in class ptolemy.data.ArrayToken
Return the element at the specified index.
getElement(int) - Method in class ptolemy.data.TupleToken
Return the element at the specified index.
getElement(int) - Method in class ptolemy.data.UpdatedArrayToken
Return the element at the specified index.
getElementAsToken(int, int) - Method in class ptolemy.data.BooleanMatrixToken
Return the element of the matrix at the specified row and column in a BooleanToken.
getElementAsToken(int, int) - Method in class ptolemy.data.ComplexMatrixToken
Return the element of the matrix at the specified row and column in a ComplexToken.
getElementAsToken(int, int) - Method in class ptolemy.data.DoubleMatrixToken
Return the element of the matrix at the specified row and column in a DoubleToken.
getElementAsToken(int, int) - Method in class ptolemy.data.expr.ConcreteMatrixToken
Throw an ArrayIndexOutOfBoundsException.
getElementAsToken(int, int) - Method in class ptolemy.data.FixMatrixToken
Return the element of the matrix at the specified row and column in a FixToken.
getElementAsToken(int, int) - Method in class ptolemy.data.IntMatrixToken
Return the element of the matrix at the specified row and column in a IntToken.
getElementAsToken(int, int) - Method in class ptolemy.data.LongMatrixToken
Return the element of the matrix at the specified row and column in a LongToken.
getElementAsToken(int, int) - Method in class ptolemy.data.MatrixToken
Return the element of the matrix at the specified row and column wrapped in a token.
getElementAt(int) - Method in class org.ecoinformatics.seek.querybuilder.DBTableListModel
Get a single field (data item)
getElementAt(int) - Method in class org.ecoinformatics.seek.querybuilder.DBWhereModel
Gets an element in the model at a specified index
getElementAt(int, int) - Method in class ptolemy.data.BooleanMatrixToken
Return the element of the contained matrix at the specified row and column.
getElementAt(int, int) - Method in class ptolemy.data.ComplexMatrixToken
Return the element of the contained matrix at the specified row and column.
getElementAt(int, int) - Method in class ptolemy.data.DoubleMatrixToken
Return the element of the contained matrix at the specified row and column.
getElementAt(int, int) - Method in class ptolemy.data.FixMatrixToken
Return the element of the contained matrix at the specified row and column.
getElementAt(int, int) - Method in class ptolemy.data.IntMatrixToken
Return the element of the contained matrix at the specified row and column.
getElementAt(int, int) - Method in class ptolemy.data.LongMatrixToken
Return the element of the contained matrix at the specified row and column.
getElementAt(int) - Method in class ptolemy.vergil.unit.UnitSolverDialog.SolutionListModel
Return an element.
getElementContentModel(String) - Method in class com.microstar.xml.XmlParser
Look up the content model of an element.
getElementContentType(String) - Method in class com.microstar.xml.XmlParser
Look up the content type of an element.
getElementCount() - Method in class ptolemy.data.type.TupleType
Return the number of arguments in this type.
getElementName() - Method in class org.kepler.util.WorkflowRun
 
getElementName() - Method in class ptolemy.kernel.InstantiableNamedObj
Get the MoML element name.
getElementName() - Method in interface ptolemy.kernel.util.MoMLExportable
Get the XML element name.
getElementName() - Method in class ptolemy.kernel.util.NamedObj
Get the MoML element name.
getElementsById(File, String, String) - Method in class org.geon.GeonXMLUtil
 
getElementsByTagId(File, String, String) - Method in class org.geon.GeonXMLUtil
 
getElementType() - Method in class ptolemy.data.ArrayToken
Return the type contained in this ArrayToken.
getElementType() - Method in class ptolemy.data.BooleanMatrixToken
Return the Type of the tokens contained in this matrix token.
getElementType() - Method in class ptolemy.data.ComplexMatrixToken
Return the Type of the tokens contained in this matrix token.
getElementType() - Method in class ptolemy.data.DoubleMatrixToken
Return the Type of the tokens contained in this matrix token.
getElementType() - Method in class ptolemy.data.expr.ConcreteMatrixToken
Return the Type of the tokens contained in this matrix token.
getElementType() - Method in class ptolemy.data.FixMatrixToken
Return the Type of the tokens contained in this matrix token.
getElementType() - Method in class ptolemy.data.IntMatrixToken
Return the Type of the tokens contained in this matrix token.
getElementType() - Method in class ptolemy.data.LongMatrixToken
Return the Type of the tokens contained in this matrix token.
getElementType() - Method in class ptolemy.data.MatrixToken
Return the Type of the tokens contained in this matrix token.
getElementType(int) - Method in class ptolemy.data.TupleToken
Return the element type at the specified index.
getElementType() - Method in class ptolemy.data.type.ArrayType
Return the type of the array elements.
getElementType() - Method in class ptolemy.data.type.MatrixType
Return the type of the elements contained in an instance of this matrix type.
getElementType(int) - Method in class ptolemy.data.type.TupleType
Return the type of the given argument.
getElementTypeTerm() - Method in class ptolemy.data.type.ArrayType
Return the InequalityTerm representing the element type.
getEnabled() - Method in class org.ecoinformatics.seek.ecogrid.SelectableDocumentType
Method to get icon enable status
getEnabled() - Method in interface org.ecoinformatics.seek.ecogrid.SelectableObjectInterface
Method to get icon enable or not
getEnabled() - Method in class org.ecoinformatics.seek.ecogrid.SelectableServiceName
Method to get icon enable status
getEncapsulatedPortReferences() - Method in class org.kepler.sms.KeplerCompositeIOPort
 
getEnd() - Method in class org.kepler.tagging.Range
 
getEndColumn() - Method in class ptolemy.data.expr.SimpleCharStream
Get token end column number.
getEndColumn() - Method in class ptolemy.moml.unit.SimpleCharStream
Get token end column number.
getEndLine() - Method in class ptolemy.data.expr.SimpleCharStream
Get token end line number.
getEndLine() - Method in class ptolemy.moml.unit.SimpleCharStream
Get token end line number.
getEndpoint() - Method in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreDataSource
Get the endpoint of this record.
getEndPoint() - Method in class org.ecoinformatics.seek.datasource.EcogridDataCacheItem
 
getEndPoint() - Method in class org.ecoinformatics.seek.ecogrid.EcoGridService
Get end point for this service
getEndpoint() - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.ResultRecord
Get the endpoint of this record.
getEndpoint() - Method in class org.kepler.dataproxy.datasource.geon.GEONDatabaseResource
Get the endpoint of this record.
getEndpoint() - Method in class org.kepler.dataproxy.datasource.geon.GEONShpResource
Get the endpoint of this record.
getEndTime() - Method in class org.kepler.workflowscheduler.gui.Schedule
Gets the end time of the schedule
getEndTimeFormat() - Method in class org.kepler.workflowscheduler.gui.Schedule
Get the format of the end time string
getEndTimeLabel() - Method in class org.kepler.workflowscheduler.gui.Schedule
Get the label for display the end time.
getEndTimeZoneID() - Method in class org.kepler.workflowscheduler.gui.Schedule
Get the time zone id of the end time
getEngineName() - Method in class org.kepler.ddp.director.DDPDirector
Get the name of the DDP engine.
getEngineName() - Method in class org.kepler.scriptengine.java.JavaScriptEngineFactory
 
getEngineProperty(String, Nameable) - Static method in class org.kepler.ddp.Utilities
Get the ConfigurationProperty for an Engine on the configuration file.
getEngineVersion() - Method in class org.kepler.scriptengine.java.JavaScriptEngineFactory
 
getEnsembleDate(Ensemble) - Method in class org.kepler.data.conversion.binary.EnsembleActor
 
getEntities() - Method in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200Parser
Get a collection of entities.
getEntities() - Method in interface org.kepler.metadata.ParserInterface
Get a collection of the Entity objects.
getEntities() - Method in class ptolemy.kernel.CompositeEntity
Deprecated.
Use entityList() instead.
getEntitiesToDecorate(CompositeEntity) - Static method in class ptolemy.actor.ExecutionAspectHelper
Execution aspects are decorators and this method recursively computes all entities inside a given container that are decorated by execution aspects.
getEntity() - Method in class org.kepler.objectmanager.data.text.TextComplexFormatDataReader
 
getEntity(String) - Method in class ptolemy.actor.LazyTypedCompositeActor
Get a contained entity by name.
getEntity() - Method in class ptolemy.data.ActorToken
Return a clone of the entity contained by this token.
getEntity(Workspace) - Method in class ptolemy.data.ActorToken
Return a clone of the entity contained by this token.
getEntity(String) - Method in class ptolemy.kernel.CompositeEntity
Get a contained entity by name.
getEntity(String) - Method in class ptolemy.moml.EntityLibrary
Get a contained entity by name.
getEntityController() - Method in class ptolemy.vergil.actor.ActorViewerGraphController
Return the value of the entity controller.
getEntityCount() - Method in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200Parser
returns the total number of entities in the data item collection that was passed to this class when the object was created.
getEntityCount() - Method in interface org.kepler.metadata.ParserInterface
returns the total number of entities in the data item collection that was passed to this class when the object was created.
getEntityHash() - Method in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200Parser
returns a hashtable of entity names hashed to the entity description metadata that goes with each entity.
getEntityId(String, KeplerLSID) - Method in class org.kepler.provenance.DefaultQuery
 
getEntityId(String, String) - Method in class org.kepler.provenance.DefaultQuery
 
getEntityId(String, KeplerLSID) - Method in interface org.kepler.provenance.Queryable
Get the id of entity.
getEntityId(String, String) - Method in interface org.kepler.provenance.Queryable
Get the id of entity.
getEntityId(String, KeplerLSID) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the id of entity.
getEntityId(String, String) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the id of entity.
getEntityIdentifier() - Method in class org.ecoinformatics.seek.datasource.EcogridDataCacheItem
Get an entity to describe the data cache
getEntityList() - Method in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource
 
getEntityList() - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.SortableResultRecord
Method to get entity list vector
getEntityNotationName(String) - Method in class com.microstar.xml.XmlParser
Get the notation name associated with an NDATA entity.
getEntityPublicId(String) - Method in class com.microstar.xml.XmlParser
Return an external entity's public identifier, if any.
getEntityReference() - Method in class org.kepler.objectmanager.data.db.ForeignKey
Method to get referenced entity
getEntityReference() - Method in class org.kepler.objectmanager.data.db.JoinConditionConstraint
Method to get referenced entity(parent table)
getEntityResolver() - Method in class com.microstar.xml.driver.SAXDriver
 
getEntityResolver() - Method in class org.kepler.reporting.rio.fop.tools.AbstractObjectReader
 
getEntitySystemId(String) - Method in class com.microstar.xml.XmlParser
Return an external entity's system identifier.
getEntityType(String) - Method in class com.microstar.xml.XmlParser
Find the type of an entity.
getEntityType(Integer) - Method in class org.kepler.provenance.DefaultQuery
 
getEntityType(Integer) - Method in interface org.kepler.provenance.Queryable
Get the type of entity.
getEntityType(Integer) - Method in class org.kepler.provenance.sql.SQLQueryV8
 
getEntityValue(String) - Method in class com.microstar.xml.XmlParser
Return the value of an internal entity.
getEntityWorkflowId(Integer) - Method in class org.kepler.provenance.DefaultQuery
 
getEntityWorkflowId(Integer) - Method in interface org.kepler.provenance.Queryable
Get the workflow id of entity.
getEntityWorkflowId(Integer) - Method in class org.kepler.provenance.sql.SQLQueryV8
 
getEntryAttribute(KAREntry, String) - Method in class org.kepler.kar.KARManifest
get a JarEntry specific attribute
getEntryAttribute(String, String) - Method in class org.kepler.kar.KARManifest
get a JarEntry specific attribute
getEntryName(KeplerLSID) - Method in class org.kepler.kar.KARFile
 
getEntryType(KeplerLSID) - Method in class org.kepler.kar.KARFile
 
getEnumeration() - Method in class org.ecoinformatics.seek.querybuilder.DBWhereOperator
Returns an enumeration for the child of the operator
getenv(String) - Static method in class ptolemy.data.expr.UtilityFunctions
Get a variable from the environment.
getenv() - Static method in class ptolemy.data.expr.UtilityFunctions
Get a variable from the environment.
getenv(String) - Method in class ptolemy.gui.JTextAreaExec
Get the value of the environment of the subprocess.
getenv(String) - Method in interface ptolemy.util.ExecuteCommands
Get the value of the environment of the subprocess.
getenv(String) - Method in class ptolemy.util.StreamExec
Get the value of the environment of the subprocess.
getEnvelope() - Method in class org.kepler.gis.util.RasterUtilities.RasterInfo
 
getEnvironmentTime() - Method in class ptolemy.actor.Director
Get current environment time.
getEnvironmentTimeForLocalTime(Time) - Method in class ptolemy.actor.LocalClock
Get the environment time that corresponds to the given local time.
getEPSGCode(String) - Static method in class org.kepler.gis.util.GISUtilities
Get the EPSG code from a WKT.
getEpsilon() - Method in class ptolemy.math.Precision
Return the incremental value between discrete values under the given Precision format.
getEpsilonValue() - Method in class ptolemy.math.Quantization
Return the separation between quantized values.
getError() - Method in class ptolemy.math.FixPoint
Deprecated.
Overflow and rounding status no longer form part of the functionality. Use an overflow and rounding mode that gives the required behaviour or use Overflow.TRAP and/or Rounding.UNNECESSARY to throw exceptions if external interaction is required.
getErrorCodeText() - Static method in class org.ecoinformatics.seek.querybuilder.DBQueryDefParserEmitter
Return the text for the error code
getErrorForExecution(KeplerLSID) - Method in class org.kepler.provenance.DefaultQuery
 
getErrorForExecution(KeplerLSID) - Method in interface org.kepler.provenance.Queryable
Get the error for an execution.
getErrorForExecution(KeplerLSID) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the error for an execution.
getErrorHandler() - Method in class com.microstar.xml.driver.SAXDriver
 
getErrorHandler() - Method in class org.kepler.reporting.rio.fop.tools.AbstractObjectReader
 
getErrorHandler() - Static method in class ptolemy.moml.MoMLParser
Get the error handler to handle parsing errors.
getErrorMessages() - Method in class org.kepler.util.WorkflowRun
 
getErrorMsg() - Method in class org.sdm.spa.actors.transport.FileCopierBase.CopyResult
 
getErrorTolerance() - Method in interface ptolemy.actor.continuous.ContinuousStatefulDirector
Return the local truncation error tolerance.
getErrorTolerance() - Method in class ptolemy.domains.continuous.kernel.ContinuousDirector
Return the local truncation error tolerance.
getErrorTolerance() - Method in class ptolemy.domains.continuous.kernel.HybridModalDirector
Return error tolerance used for detecting enabled transitions.
geteValue() - Method in class org.kepler.bio.util.BlastTabularResult
 
getEvent() - Method in class org.kepler.ssh.SshEvent
Return the type of event.
getEventData() - Method in class org.kepler.workflowrunmanager.WorkflowRunManagerEvent
 
getEventLSIDs() - Method in class org.kepler.workflowrunmanager.WorkflowRunManagerEvent
 
getEventName() - Method in class org.kepler.workflowrunmanager.WorkflowRunManagerEvent
Type of event
getEventType() - Method in class ptolemy.actor.IOPortEvent
Return the type of event.
getExactOverflow() - Method in class ptolemy.math.Quantization
Return the overflow bit-truth.
getExactRounding() - Method in class ptolemy.math.Quantization
Return the rounding bit-truth.
getExampleType() - Method in class ptolemy.graph.NonLatticeCounterExample
Return the example type for this NonLatticeCounterExample.
getException() - Method in class ptolemy.domains.pn.kernel.event.PNProcessEvent
Return the exception associated with the event.
getExecId() - Method in class org.kepler.util.WorkflowRun
Return the execution ID.
getExecLSID() - Method in class org.kepler.util.WorkflowRun
 
getExecLSID() - Method in class org.kepler.util.WorkflowRunBuilder
 
getExecObject(String) - Static method in class org.kepler.ssh.ExecFactory
Helper method to provide the target as a complete string.
getExecObject(String, String) - Static method in class org.kepler.ssh.ExecFactory
 
getExecObject(String, String, int) - Static method in class org.kepler.ssh.ExecFactory
Return an object with ExecInterface, based on the specified target.
getExecuteCommands() - Method in class ptolemy.vergil.actor.DocBuilder
Get the command executor, which can be either non-graphical or graphical.
getExecutionAspect(NamedObj) - Method in class ptolemy.actor.Director
Find the ExecutionAspect for the actor.
getExecutionChoiceNames() - Method in class org.kepler.ddp.actor.ExecutionChoice
Get a list of execution choice names.
getExecutionClassName() - Method in class org.kepler.ddp.actor.pattern.AtomicPatternActor
Get the name of the execution class.
getExecutionClassName() - Method in interface org.kepler.ddp.actor.pattern.DDPPatternActor
Get the name of the execution class.
getExecutionClassName() - Method in class org.kepler.ddp.actor.pattern.SingleInputPatternActor
Get the name of the execution class.
getExecutionCode() - Method in class org.kepler.ddp.actor.pattern.AtomicPatternActor
Get the execution code.
getExecutionCode() - Method in interface org.kepler.ddp.actor.pattern.DDPPatternActor
Get the execution code.
getExecutionCode() - Method in class org.kepler.ddp.actor.pattern.SingleInputPatternActor
Get the execution code.
getExecutionCodeType() - Method in class org.kepler.ddp.actor.pattern.AtomicPatternActor
Get the execution code type.
getExecutionCodeType() - Method in interface org.kepler.ddp.actor.pattern.DDPPatternActor
Get the execution code type.
getExecutionCodeType() - Method in class org.kepler.ddp.actor.pattern.SingleInputPatternActor
Get the execution code type.
getExecutionForExecutionLSID(KeplerLSID) - Method in class org.kepler.provenance.DefaultQuery
 
getExecutionForExecutionLSID(KeplerLSID) - Method in interface org.kepler.provenance.Queryable
Get the execution for a specific run LSID.
getExecutionForExecutionLSID(KeplerLSID) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the execution ids for a specific exec LSID.
getExecutionForExecutionLSIDWithoutRevision(String) - Method in class org.kepler.provenance.DefaultQuery
 
getExecutionForExecutionLSIDWithoutRevision(String) - Method in interface org.kepler.provenance.Queryable
Get execution id for an execution LSID without revision.
getExecutionForExecutionLSIDWithoutRevision(String) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get execution id for an execution LSID without revision.
getExecutionForOldestReferralExecutionLSIDWithoutRevision(String) - Method in class org.kepler.provenance.DefaultQuery
 
getExecutionForOldestReferralExecutionLSIDWithoutRevision(String) - Method in interface org.kepler.provenance.Queryable
Get execution id for execution that has the given LSID as its oldest referral.
getExecutionForOldestReferralExecutionLSIDWithoutRevision(String) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get execution id for execution that has the given LSID as its oldest referral.
getExecutionIdentifier(Throwable) - Method in class ptolemy.actor.Manager
Get the execution identifier object for a throwable.
getExecutionIdsForTags(String) - Method in class org.kepler.provenance.DefaultQuery
 
getExecutionIdsForTags(String) - Method in interface org.kepler.provenance.Queryable
Get execution ids for %tagsSearchString% (case insensitive)
getExecutionIdsForTags(String) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get a list of executions for workflow(s) with tags that contain tagsSearchString (case insensitive)
getExecutionLanguageNames() - Static method in class org.kepler.ddp.Utilities
Get a list of available execution language names.
getExecutionListeners() - Method in class org.kepler.ExecutionEngine
return a vector of all of the registered ExecutionListeners
getExecutionLSID() - Method in class org.kepler.provenance.ProvenanceRecorder
Get the execution LSID.
getExecutionLSIDForExecution(Integer) - Method in class org.kepler.provenance.DefaultQuery
 
getExecutionLSIDForExecution(Integer) - Method in class org.kepler.provenance.prov.ProvQuery
Get the execution LSID for a workflow execution id.
getExecutionLSIDForExecution(Integer) - Method in interface org.kepler.provenance.Queryable
Get the execution LSID for a specific execution id.
getExecutionLSIDForExecution(Integer) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the execution LSID for a specific execution id.
getExecutionLSIDs() - Method in class org.kepler.provenance.DefaultQuery
 
getExecutionLSIDs() - Method in class org.kepler.provenance.manager.TransferComponent
Get the KeplerLSIDs for provenance executions.
getExecutionLSIDs() - Method in interface org.kepler.provenance.Queryable
Get a list of all execution LSIDs.
getExecutionLSIDs() - Method in class org.kepler.provenance.sql.SQLQueryV8
Get a list of all execution LSIDs.
getExecutionLSIDsForWorkflowRuns(String, String, Date, Date, int, int) - Method in class org.kepler.provenance.DefaultQuery
 
getExecutionLSIDsForWorkflowRuns(String, String, Date, Date, int, int) - Method in interface org.kepler.provenance.Queryable
 
getExecutionLSIDsForWorkflowRuns(String, String, Date, Date, int, int) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get a list of executions for workflow(s) that match Workflow Run Manager (WRM) search criteria.
getExecutions() - Method in class org.kepler.provenance.DefaultQuery
 
getExecutions() - Method in class org.kepler.provenance.prov.ProvQuery
Get execution ids.
getExecutions() - Method in interface org.kepler.provenance.Queryable
Get a list of all executions.
getExecutions() - Method in class org.kepler.provenance.sql.SQLQueryV8
Get a list of all executions.
getExecutionsForAnnotation(String) - Method in class org.kepler.provenance.DefaultQuery
 
getExecutionsForAnnotation(String) - Method in interface org.kepler.provenance.Queryable
Get a list of executions for a specific execution annotation.
getExecutionsForAnnotation(String) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get a list of executions for a specific execution annotation.
getExecutionsForTimespan(Date, Date) - Method in class org.kepler.provenance.DefaultQuery
 
getExecutionsForTimespan(Date, Date) - Method in interface org.kepler.provenance.Queryable
Get executions within a timespan.
getExecutionsForTimespan(Date, Date) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get executions within a timespan.
getExecutionsForType(WorkflowRun.type) - Method in class org.kepler.provenance.DefaultQuery
 
getExecutionsForType(WorkflowRun.type) - Method in interface org.kepler.provenance.Queryable
Get a list of executions corresponding to a specific type.
getExecutionsForType(WorkflowRun.type) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get a list of executions corresponding to a specific type.
getExecutionsForWorkflow(String) - Method in class org.kepler.provenance.DefaultQuery
 
getExecutionsForWorkflow(String) - Method in interface org.kepler.provenance.Queryable
Get a list of executions for a specific workflow.
getExecutionsForWorkflow(String) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get a list of executions for a specific workflow.
getExecutionsForWorkflowNameContains(String) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get a list of executions for workflow(s) with names that contain text (case insensitive).
getExecutionsForWorkflowRuns(String, String) - Method in class org.kepler.provenance.DefaultQuery
 
getExecutionsForWorkflowRuns(String, String, Date, Date, int, int) - Method in class org.kepler.provenance.DefaultQuery
 
getExecutionsForWorkflowRuns(String, String) - Method in interface org.kepler.provenance.Queryable
Get executions that have %workflowName% and %userName%.
getExecutionsForWorkflowRuns(String, String, Date, Date, int, int) - Method in interface org.kepler.provenance.Queryable
Get executions that have %workflowName% and %userName%. and startTime >= after and startTime <= before.
getExecutionsForWorkflowRuns(String, String) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get a list of executions for workflow(s) that match Workflow Run Manager (WRM) search criteria.
getExecutionsForWorkflowRuns(String, String, Date, Date, int, int) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get a list of executions for workflow(s) that match Workflow Run Manager (WRM) search criteria.
getExecutionsForWorkflowRunsAfter(String, String, Date) - Method in class org.kepler.provenance.DefaultQuery
 
getExecutionsForWorkflowRunsAfter(String, String, Date) - Method in interface org.kepler.provenance.Queryable
Get executions that have %workflowName% and %userName%. and startTime > after.
getExecutionsForWorkflowRunsAfter(String, String, Date) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get a list of executions for workflow(s) that match Workflow Run Manager (WRM) search criteria after a date.
getExecutionsForWorkflowRunsAt(String, String, String) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get a list of executions for workflow(s) that match Workflow Run Manager (WRM) search criteria "at" a date.
getExecutionsForWorkflowRunsBefore(String, String, Date) - Method in class org.kepler.provenance.DefaultQuery
 
getExecutionsForWorkflowRunsBefore(String, String, Date) - Method in interface org.kepler.provenance.Queryable
Get exections that have %workflowName% and %userName%, and startTime < before.
getExecutionsForWorkflowRunsBefore(String, String, Date) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get a list of executions for workflow(s) that match Workflow Run Manager (WRM) search criteria before a date.
getExecutionTime(NamedObj) - Method in interface ptolemy.actor.ActorExecutionAspect
Get the execution time of an actor.
getExecutionTimesForActor(KeplerLSID, KeplerLSID, String) - Method in class org.kepler.provenance.DefaultQuery
Get the execution times for an actor.
getExecutionTimesForActor(KeplerLSID, KeplerLSID, String) - Method in interface org.kepler.provenance.Queryable
Get the execution times for an actor.
getExecutionTimesForActor(KeplerLSID, KeplerLSID, String) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the execution times for an actor.
getExecutiveDirector() - Method in interface ptolemy.actor.Actor
Return the executive director, if there is one, otherwise return null.
getExecutiveDirector() - Method in class ptolemy.actor.AtomicActor
Return the executive director (same as getDirector()).
getExecutiveDirector() - Method in class ptolemy.actor.CompositeActor
Return the executive director of this CompositeActor.
getExecutiveDirector() - Method in class ptolemy.domains.modal.kernel.FSMActor
Return the executive director (same as getDirector()).
getExistingTagsPanel() - Method in class org.kepler.tagging.gui.TagBarInsertionUI
 
getExitCode() - Method in class org.sdm.spa.actors.transport.FileCopierBase.CopyResult
 
getExponent() - Method in class ptolemy.math.Precision
Return the location of the binary exponent.
getExponent() - Method in class ptolemy.moml.unit.UnitTerm
 
getExponentBitLength() - Method in class ptolemy.math.Quantization
Return the number of bits to represent the exponent.
getExportParameters() - Method in class ptolemy.vergil.basic.export.html.ExportHTMLAction
During invocation of ExportHTMLAction.writeHTML(ExportParameters, Writer), return the parameters being used.
getExportParameters() - Method in interface ptolemy.vergil.basic.export.web.WebExporter
During invocation an export, return the parameters of the export.
getExportParameters() - Method in class ptolemy.vergil.basic.export.web.WebExportParameters
Return the current parameter values in a data structure.
getExpression() - Method in class org.kepler.moml.DependencyAttribute
return the value of the id
getExpression() - Method in class org.kepler.moml.PortAttribute
return the value of the id
getExpression() - Method in class ptolemy.actor.LocalClock
Return the local time.
getExpression() - Method in class ptolemy.actor.parameters.PortParameter
Get the persistent expression.
getExpression() - Method in class ptolemy.data.expr.Variable
Get the expression currently used by this variable.
getExpression(String) - Method in class ptolemy.domains.modal.kernel.AbstractActionsAttribute
Return the expression referred to by the given name.
getExpression() - Method in class ptolemy.domains.modal.kernel.FSMTransitionParameter
Return the name of the parameter.
getExpression() - Method in class ptolemy.kernel.util.ConfigurableAttribute
Return the the result of calling value().
getExpression() - Method in class ptolemy.kernel.util.Location
Get the value that has been set by setExpression() or by setLocation(), whichever was most recently called, or return an empty string if neither has been called.
getExpression() - Method in interface ptolemy.kernel.util.Settable
Get the expression of the attribute that has been set by setExpression(), or null if there is none.
getExpression() - Method in class ptolemy.kernel.util.StringAttribute
Get the value that has been set by setExpression(), or null if there is none.
getExpression() - Method in class ptolemy.moml.unit.UnitAttribute
Get the descriptive form of this attribute.
getExpression() - Method in class ptolemy.vergil.actor.LayoutHint
Get the value that has been set by setExpression() or by setLayoutHintItem(), whichever was most recently called, or return an empty string if neither has been called.
getExpression() - Method in class ptolemy.vergil.actor.LayoutHint.LayoutHintItem
Get the String representation of the Ptolemy Expression by which this LayoutHint is persisted.
getExpression() - Method in class ptolemy.vergil.actor.lib.MonitorReceiverAttribute
Get the expression currently used by this variable.
getExpression() - Method in class ptolemy.vergil.kernel.attributes.AttributeValueAttribute
Get the value of the attribute that has been set by setExpression(), or null if there is none.
getExpressionTree() - Method in class ptolemy.data.expr.ASTPtAssignmentNode
 
getExpressionTree() - Method in class ptolemy.data.expr.ASTPtFunctionDefinitionNode
Return the parse tree of the expression for this function.
getExtendedContainer() - Method in interface ptolemy.data.expr.ContainmentExtender
Get the extended container.
getExtendedContainer() - Method in class ptolemy.domains.modal.kernel.Configurer.ContainmentExtender
Get the extended container.
getExtendedContainer() - Method in class ptolemy.domains.modal.kernel.ContainmentExtender
Get the extended container.
getExtension(File) - Method in class org.ecoinformatics.seek.querybuilder.DBFileFilter
Return the extension portion of the file's name .
getExtension(File) - Static method in class org.kepler.util.FileUtil
 
getExtension(URL) - Static method in class ptolemy.actor.gui.EffigyFactory
Return the extension on the name of the specified URL.
getExtensions() - Method in class org.kepler.scriptengine.java.JavaScriptEngineFactory
 
getExternalPortModel() - Method in class ptolemy.vergil.actor.ActorGraphModel
Get the external port model.
getExternalRates() - Method in class ptolemy.domains.sdf.kernel.SDFScheduler
Get the external port rates.
getFactory() - Method in class org.kepler.scriptengine.java.JavaScriptEngine
 
getFalseValue() - Method in class org.kepler.util.sql.DatabaseType
Get a string representation of the false value for a boolean column.
getFalseValue() - Method in class org.kepler.util.sql.HSQL
Get a string representation of the false value for a boolean column.
getFalseValue() - Method in class org.kepler.util.sql.PostgreSQL
Get a string representation of the false value for a boolean column.
getFeature(String) - Method in class com.microstar.xml.driver.SAXDriver
 
getFeature(String) - Method in class org.kepler.reporting.rio.fop.tools.AbstractObjectReader
 
getField(int) - Method in class org.ecoinformatics.seek.querybuilder.DBTableFrame
Returns a field item given an index
getFieldById(DBSelectTableModelItem) - Method in class org.ecoinformatics.seek.querybuilder.DBTableDesktopPane
Return the appropriate DBTableField from the a desktoppane table frame by its Id (or table name if the id is -1, and then the field name
getFieldByName(DSTableIFace, String) - Static method in class org.ecoinformatics.seek.querybuilder.DBUIUtils
Returns a DBTableField object by name
getFieldByName(DSSchemaIFace, String, String) - Static method in class org.ecoinformatics.seek.querybuilder.DBUIUtils
Returns a DBTableField object by name
getFieldDelimiter() - Method in class org.kepler.objectmanager.data.text.TextDelimitedDataFormat
 
getFieldFor(DBSelectTableModelItem) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelAdv
Look up in the Schema for the field in it's table Then checks to see if it is an instanceof DBTableField and returns that
getFieldFor(DBSelectTableModelItem) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelStd
Look up in the Schema for the field in it's table Then checks to see if it is an instanceof DBTableField and returns that
getFieldForRow(int) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelBase
Gets the current field for a row
getFieldForRow(int) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableOverviewModel
Gets the current field for a row
getFieldNames() - Method in class ptolemy.data.expr.ASTPtRecordConstructNode
Return the list of field names for this record construct.
getFields() - Method in class org.ecoinformatics.seek.querybuilder.DBTableFrame
Returns a Vector of the fields in the table
getFields() - Method in class org.ecoinformatics.seek.querybuilder.DBTableListModel
Returns the Vector of field object (data)
getFields() - Method in class org.kepler.objectmanager.data.db.DSTableDef
Returns a Vector of all the fields in a table
getFields() - Method in interface org.kepler.objectmanager.data.db.DSTableIFace
Returns a Vector of the fields in the table
getFields() - Method in class org.kepler.objectmanager.data.db.DSTableKeyDef
Get Vector of DSTableFieldDef objects
getFields() - Method in class org.kepler.objectmanager.data.db.Entity
Returns a Vector of the fields in the table
getFieldStartColumn() - Method in class org.kepler.objectmanager.data.text.TextWidthFixedDataFormat
Get field start column
getFieldWidth() - Method in class org.kepler.objectmanager.data.text.TextWidthFixedDataFormat
Get field width
getFigure() - Method in class org.kepler.monitor.FigureUpdater
Gets the associated figure.
getFigure() - Method in class org.kepler.monitor.MonitorIcon
 
getFigure() - Method in class ptolemy.vergil.actor.PortConnectSite
Return the parent figure specified in the constructor.
getFigure() - Method in class ptolemy.vergil.toolbox.FigureAction
Return the figure of this action.
getFigure() - Method in class ptolemy.vergil.toolbox.PortSite
Get the figure to which this site is attached.
getFigureUnder(GraphPane, Point2D, Object[]) - Static method in class ptolemy.vergil.basic.BasicGraphFrame
Return the figure that is an icon of a NamedObj and is under the specified point, or null if there is none.
getFigureUpdater() - Method in class org.kepler.monitor.MonitorAttribute
 
getFile() - Method in class org.kepler.configuration.RootConfigurationProperty
return the file that this configuration property represents
getFile() - Method in class org.kepler.kar.KARCached
 
getFile() - Method in class org.kepler.kar.KARCacheError
 
getFile() - Method in class org.kepler.kar.SaveKAR
 
getFile() - Method in class org.kepler.objectmanager.cache.CacheContent
 
getFile(String, String) - Static method in class org.kepler.objectmanager.cache.DataCacheManager
Returns NULL if the object is not in the cache.
getFile() - Method in class org.kepler.objectmanager.cache.DataCacheObject
 
getFile() - Method in class org.kepler.sms.NamedOntModel
 
getFile(File) - Static method in class org.sdm.spa.Util
 
getFileAsString(String) - Static method in class ptolemy.util.FileUtilities
Return the string contents of the file at the specified location.
getFileCopier(String) - Static method in class org.sdm.spa.actors.transport.FileCopierFactory
Returns the appropriate derived class of FileCopier based on the protocol passed.
getFileLocation() - Method in class org.kepler.kar.KARFile
 
getFileLocation() - Method in class org.kepler.objectmanager.cache.DataCacheFileObject
 
getFileName() - Method in class org.kepler.objectmanager.data.db.Entity
Returns the fileName.
getFileNameForClassName(String) - Static method in class org.kepler.kar.SuperClassPathFinderDoclet
Return the path for a fully-qualified class name.
getFileNameForm() - Method in class org.kepler.util.AuthNamespace
The purpose here is to return a unique string based on the authNamespace string that can be used for including in the name of Instance specific strings such as the .kepler directory name.
getFileNameWithoutExtension(String) - Static method in class org.kepler.util.FileUtil
Return filename without extension.
getFileOnDisk() - Method in class org.kepler.moml.FolderEntityLibrary
 
getFilePathNames() - Method in class org.kepler.sms.util.OntologyConfiguration
Get the file path names for the ontologies
getFiles() - Method in class org.kepler.cloudsharing.actor.ShareToCloud
Get the file names to be uploaded.
getFiles() - Method in class ptolemy.util.RecursiveFileFilter
Return the list of all files and directories after the filtering.
getFilteredVectors(Filter) - Method in class org.kepler.gis.data.VectorToken
Get the filtered set of features represented in this token.
getFilterFile() - Method in class org.kepler.gui.ComponentLibraryTab
 
getFinishingCause() - Method in class ptolemy.domains.pn.kernel.event.PNProcessEvent
Return the cause of the finishing state.
getFiringCount(Entity) - Method in class ptolemy.domains.sdf.kernel.SDFScheduler
Create the schedule.
getFiringElement() - Method in class ptolemy.graph.sched.Firing
Get the firing element associated with this Firing.
getFlag() - Method in class org.kepler.CommandLineArgument
Get the flag.
getFolderModel(String) - Method in class org.kepler.objectmanager.cache.LocalRepositoryManager
 
getFolderModelNode(File) - Method in class org.kepler.objectmanager.cache.LocalRepositoryManager
Given the File object for a folder in a local repository, return the corresponding DefaultMutableTreeNode object from the Folder model.
getFolderName() - Method in class org.kepler.gui.NewFolderFrame
get the folder name from the user input. don't call this until the actionlistener has been fired.
getFont() - Method in class ptolemy.plot.EPSGraphics
 
getFontMetrics(Font) - Method in class ptolemy.plot.EPSGraphics
 
getFooter() - Method in class org.kepler.reporting.rio.ReportSection
 
getForcedCleanUp() - Method in class org.kepler.ssh.GsiSshExec
 
getForcedCleanUp() - Method in class org.kepler.ssh.RemoteExec
 
getForcedCleanUp() - Method in class org.kepler.ssh.SshExec
 
getForceOpen() - Static method in class org.kepler.Kepler
Returns true if -force was specified on the command line.
getForecastURI(boolean) - Method in class org.kepler.gis.actor.pylaski.PylaskiUtilities.Settings
Generates the REST URI for retrieving future/forecast observable data.
getForecastURI() - Method in class org.kepler.gis.actor.pylaski.PylaskiUtilities.Settings
Generates the REST URI for retrieving future/forecast observable data.
getForegroundColor() - Method in class org.kepler.monitor.figure.ProgressBarFigure
 
getForegroundColor() - Method in class ptolemy.gui.QueryChooser
Returns the color for the foreground.
getForeignKey(String) - Method in class org.kepler.util.sql.Table
Get a specific foreign key.
getForm() - Method in class ptolemy.data.expr.ASTPtMatrixConstructNode
 
getFormat() - Method in class org.kepler.provenance.manager.TransferComponent
Get the provenance format.
getFormatClassName(String) - Method in class org.kepler.ddp.actor.pattern.AtomicPatternActor
Get the name of the class that provides the format type implementation for a specific engine.
getFormatString() - Method in class org.kepler.objectmanager.data.DateTimeDomain
 
getFractionBitLength() - Method in class ptolemy.math.Precision
Return the number of bits representing the fractional part.
getFractionBitLength() - Method in class ptolemy.math.Quantization
Return the number of bits representing the fractional part of the mantissa.
getFractionMissingDataPixels() - Method in class org.ecoinformatics.seek.gis.java_gis.Grid
 
getFractionPixelsWithValue(double, double) - Method in class org.ecoinformatics.seek.gis.java_gis.Grid
 
getFrame() - Method in class org.ecoinformatics.seek.querybuilder.QBApp
Returns the frame instance
getFrame() - Method in class org.kepler.gui.frame.TabbedKeplerGraphFrameEvent
Get the frame in which the state change occurs.
getFrame() - Method in class org.kepler.gui.KeplerGraphFrame.Components
Get the KeplerGraphFrame.
getFrame(NamedObj) - Method in class org.kepler.gui.ModelToFrameManager
Get the frame for a model.
getFrame() - Method in class ptolemy.actor.gui.properties.GUIAction
Get the frame in which this item is selected.
getFrame() - Method in class ptolemy.actor.gui.Tableau
Return the top-level window that implements the display of this tableau.
getFrame() - Method in interface ptolemy.actor.lib.gui.PlotterBaseInterface
Get the plotter's frame.
getFrame() - Method in class ptolemy.actor.lib.gui.PlotterBaseJavaSE
Get the plotter's frame.
getFrame() - Method in interface ptolemy.actor.lib.image.ImageDisplayInterface
Get the image's frame.
getFrame() - Method in class ptolemy.actor.lib.image.ImageDisplayJavaSE
Get the image's frame.
getFrame() - Method in class ptolemy.vergil.basic.BasicGraphController
Get the graph frame, or null if there is none.
getFrame() - Method in class ptolemy.vergil.basic.BasicGraphFrame
The frame (window) being exported to HTML.
getFrame() - Method in class ptolemy.vergil.basic.export.html.ExportHTMLAction
The frame (window) being exported to HTML.
getFrame() - Method in interface ptolemy.vergil.basic.export.web.WebExporter
The frame (window) being exported.
getFrame() - Method in class ptolemy.vergil.toolbox.FigureAction
Return the frame responsible for triggering this action, or null if none could be found.
getFrameTabs(TableauFrame) - Method in class org.kepler.gui.TabManager
Return a vector of tab pane objects for the specified TableauFrame.
getFrameViews(TableauFrame) - Method in class org.kepler.gui.ViewManager
Return a vector of ViewPane objects for the specified TableauFrame.
getFreeIdentifiers() - Method in class ptolemy.data.expr.Variable
Return the list of identifiers referenced by the current expression.
getFreeVariables(Entity) - Method in class ptolemy.actor.util.FreeVariableModelAnalysis
Return the computed free variables for the given entity.
getFromCache(String, String) - Static method in class org.sdm.spa.Util
Get Caching result It will be stored at file p1_p2;
getFromString(String) - Static method in enum org.kepler.job.JobStatusCode
 
getFullDomain() - Method in class org.kepler.authentication.Domain
 
getFullFieldName(DBTableField) - Static method in class org.ecoinformatics.seek.querybuilder.DBUIUtils
Returns the full table name/field name concatenated
getFullFieldName(String, String) - Static method in class org.ecoinformatics.seek.querybuilder.DBUIUtils
Returns the full table name/field name concatenated
getFullLabel() - Method in class ptolemy.domains.modal.kernel.Transition
Return the full label, which may include the guard expression, the output expression and the set actions.
getFullName() - Method in class org.kepler.configuration.ConfigurationProperty
returns a fully qualified name including the module and namespace
getFullName(Nameable) - Static method in exception ptolemy.kernel.util.KernelException
Get the name of a Nameable object.
getFullName() - Method in interface ptolemy.kernel.util.Nameable
Return the full name, which reflects the container object, if there is one.
getFullName() - Method in class ptolemy.kernel.util.NamedObj
Return a string of the form ".name1.name2...nameN".
getFullName() - Method in class ptolemy.kernel.util.Workspace
Get the full name.
getFullRecord() - Method in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource
Overwrite the method in Parent class -- ResultRecord
getFullRecord() - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.ResultRecord
 
getFunction() - Method in class ptolemy.data.FunctionToken
Return the function of this token.
getFunctionName() - Method in class ptolemy.data.expr.ASTPtFunctionApplicationNode
 
getFuturisticPiggybacks(Recording) - Static method in class org.kepler.provenance.ProvenanceRecorder
Return list of recordings that receive provenance events from all ProvenanceRecorders created in the future.
getGapOpenings() - Method in class org.kepler.bio.util.BlastTabularResult
 
getGlobalTime() - Method in class ptolemy.actor.Director
Return the global time for this model.
getGraphController() - Method in class org.kepler.gui.KeplerGraphFrame
Get the graph controller.
getGraphController() - Method in class ptolemy.vergil.debugger.DebugProfile
Get the GraphController.
getGraphModel() - Method in class org.kepler.gui.frame.TabbedKeplerGraphFrame.TabbedKeplerController
Override the base class to select the graph model associated with the selected pane.
getGraphModel() - Method in class ptolemy.vergil.modal.CaseGraphFrame.CaseGraphController
Override the base class to select the graph model associated with the selected pane.
getGraphPanner() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Return the JCanvasPanner instance.
getGreaterTerm() - Method in class ptolemy.graph.Inequality
Return the greater term of this inequality.
getGrid() - Method in class ptolemy.plot.PlotBox
Return whether the grid is drawn.
getGrid() - Method in interface ptolemy.plot.PlotBoxInterface
Return whether the grid is drawn.
getGridSize(RasterToken) - Static method in class org.kepler.gis.util.RasterUtilities
Get the grid size of a raster.
getGroups(User) - Static method in class org.kepler.webview.server.auth.AuthUtilities
Get the groups for a vertx user.
getGuardExpression() - Method in class ptolemy.domains.modal.kernel.Transition
Return the guard expression.
getHandler() - Method in class org.kepler.kar.KAREntry
 
getHandler() - Method in class org.kepler.kar.karxml.KarXml.KarEntry
 
getHasGZipDataFile() - Method in class org.kepler.objectmanager.data.db.Entity
Method to get if the data file is gzip
getHasTarDataFile() - Method in class org.kepler.objectmanager.data.db.Entity
Method to get if this has a tar data file
getHasZipDataFile() - Method in class org.kepler.objectmanager.data.db.Entity
Method get if the data file is zip file
getHazelcastDiscoveryDnsServiceName() - Static method in class org.kepler.webview.server.WebViewConfiguration
 
getHead(Object) - Method in class ptolemy.vergil.actor.ActorGraphModel.LinkModel
Return the head node of the given edge.
getHead() - Method in class ptolemy.vergil.actor.LayoutHint.LayoutHintItem
Get the head of this LayoutHint which is used to identify this hint.
getHead() - Method in class ptolemy.vergil.kernel.Link
Return the head of this link.
getHead(Object) - Method in class ptolemy.vergil.modal.FSMGraphModel.ArcModel
Return the head node of the given edge.
getHeader() - Method in class org.kepler.reporting.rio.ReportSection
 
getHeaderContent() - Method in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Get the head content.
getHeaderEditor() - Method in class org.kepler.workflowrunmanager.gui.ColumnGroup
 
getHeaderGraphic() - Method in class org.kepler.reporting.roml.ReportLayout
 
getHeaderRenderer() - Method in class org.kepler.workflowrunmanager.gui.ColumnGroup
Returns the TableCellRenderer for the ColumnGroup.
getHeaderValue() - Method in class org.kepler.workflowrunmanager.gui.ColumnGroup
Get the ColumnGroup header object.
getHeadSite(Figure, double, double) - Method in class ptolemy.vergil.actor.LinkController.LinkTarget
Get the head site.
getHeadSite() - Method in class ptolemy.vergil.actor.LinkManhattanConnector
Override the base class to return a different site for each connection to a multiport.
getHeadTailPoints(Connector, List<Point2D>) - Static method in class ptolemy.vergil.actor.KielerLayoutUtil
Get the starting and ending points of a connector.
getHeight() - Method in class com.jgoodies.forms.layout.FormLayout.LayoutInfo
Returns the layout's height, the size between the first and last row.
getHighestCachedLsidRevision(KeplerLSID) - Method in class org.kepler.objectmanager.cache.CacheManager
 
getHighestCacheObjectRevision(KeplerLSID) - Method in class org.kepler.objectmanager.cache.CacheManager
Return the CacheObject that has the highest revision number and matches the given LSID, return null if not found.
getHighestObjectRevision(KeplerLSID) - Method in class org.kepler.objectmanager.ObjectManager
Return the NamedObj that has the highest revision number for a given LSID after searching through all the NamedObjs accessible by the ObjectManager.
getHighestRankedFile(String) - Static method in class org.kepler.util.FileUtil
Return the highest ranked (i.e. top override) of the given relative file path.
getHistory(int) - Method in class ptolemy.actor.lib.Recorder
Get the history for the specified channel number.
getHistory() - Method in class ptolemy.domains.sdf.kernel.test.SDFTestConsumer
Return a string representing the values of the tokens that have been consumed so far by this actor, since its creation.
getHistoryCapacity() - Method in class ptolemy.actor.QueueReceiver
Return the capacity of the history queue.
getHistoryCapacity() - Method in class ptolemy.actor.util.FIFOQueue
Return the capacity of the history queue.
getHistoryCapacity() - Method in class ptolemy.domains.sdf.kernel.ArrayFIFOQueue
Return the capacity of the history queue.
getHistoryCapacity() - Method in class ptolemy.domains.sdf.kernel.SDFReceiver
Return the capacity of the history queue.
getHost() - Method in class org.sdm.spa.actors.transport.vo.ConnectionDetails
 
getHostId() - Method in class org.kepler.util.WorkflowRun
 
getHostIdForExecution(Integer) - Method in class org.kepler.provenance.DefaultQuery
 
getHostIdForExecution(Integer) - Method in interface org.kepler.provenance.Queryable
Get the host id for a specific execution id.
getHostIdForExecution(Integer) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the host id for a specific execution id.
getHour() - Method in class ptolemy.data.DateToken
Get the hour part of this date.
getHTML() - Method in interface org.kepler.webview.actor.WebViewable
 
getHTML() - Method in class org.kepler.webview.actor.WebViewAttribute
 
getHTMLPageContent() - Method in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Get the content of the whole HTML page.
getHttpServerAllowWorkflowDownloads() - Static method in class org.kepler.webview.server.WebViewConfiguration
Returns true if the http server allows workflows to be downloaded.
getHttpServerAppendIndexHtml() - Static method in class org.kepler.webview.server.WebViewConfiguration
 
getHttpServerCorsAllowOriginPattern() - Static method in class org.kepler.webview.server.WebViewConfiguration
Get the CORS allow origin pattern.
getHttpServerCorsEnabled() - Static method in class org.kepler.webview.server.WebViewConfiguration
Returns true if the http server allows CORS.
getHttpServerDirectoriesToIndex() - Static method in class org.kepler.webview.server.WebViewConfiguration
Get list of server directories that can be indexed.
getHttpServerInstances() - Static method in class org.kepler.webview.server.WebViewConfiguration
Get the number of instances of http servers to start.
getHttpServerLogPath() - Static method in class org.kepler.webview.server.WebViewConfiguration
Get the log directory and file name for the http server.
getHttpServerMetadataFileName() - Static method in class org.kepler.webview.server.WebViewConfiguration
Get the metadata file name.
getHttpServerPort() - Static method in class org.kepler.webview.server.WebViewConfiguration
 
getHttpServerRedirectHostname() - Static method in class org.kepler.webview.server.WebViewConfiguration
Get the hostname to redirect http requests to.
getHttpServerRedirectPort() - Static method in class org.kepler.webview.server.WebViewConfiguration
Get the port to redirect http requests to.
getHttpServerRedirectStatus() - Static method in class org.kepler.webview.server.WebViewConfiguration
Get the http redirect status code.
getHttpServerRootDir() - Static method in class org.kepler.webview.server.WebViewConfiguration
Returns the root directory for the HTTP Server.
getHttpServerSessionTimeout() - Static method in class org.kepler.webview.server.WebViewConfiguration
Get the timeout, in milliseconds, for the session if not accessed.
getHttpServerTableOfContentsPath() - Static method in class org.kepler.webview.server.WebViewConfiguration
Get the path regex of the http server table of contents.
getHttpServerWorkerThreads() - Static method in class org.kepler.webview.server.WebViewConfiguration
Returns the number of threads for the worker pool.
getHttpServerWorkflowTimeout() - Static method in class org.kepler.webview.server.WebViewConfiguration
Get the timeout, in milliseconds, for workflow execution.
getHttpsPEMCertPath() - Static method in class org.kepler.webview.server.WebViewConfiguration
Get the SSL PEM Certificate file path.
getHttpsPEMKeyPath() - Static method in class org.kepler.webview.server.WebViewConfiguration
Get the SSL PEM Key file path.
getHttpsServerPort() - Static method in class org.kepler.webview.server.WebViewConfiguration
Get the port number for the https server.
getI15dString(String) - Method in class com.jgoodies.forms.builder.I15dPanelBuilder
Looks up and returns the internationalized (i15d) string for the given resource key from the ResourceBundle.
getIcon() - Method in class org.kepler.monitor.MonitorAttribute
 
getIcon() - Method in class org.kepler.reporting.rio.Item
 
getIcon() - Method in class org.kepler.reporting.rio.StaticReportItemHR
 
getIcon() - Method in class org.kepler.reporting.rio.StaticReportItemImage
 
getIcon() - Method in class org.kepler.reporting.rio.StaticReportItemLabel
 
getIcon() - Method in class org.kepler.reporting.rio.StaticReportItemSection
 
getIcon() - Method in class org.kepler.reporting.rio.StaticReportItemText
 
getIconLoader() - Static method in class ptolemy.moml.MoMLParser
Get the icon loader for all MoMLParsers.
getIconModel() - Method in class ptolemy.vergil.actor.ActorGraphModel
Get the icon model.
getIconURL(String, String) - Method in class org.kepler.reporting.gui.ItemsOfInterestPanel
 
getIconURL(String, String) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
Method that sets the location for the images directory for the icons and appends ".gif" or ".png", etc. to the name of the file if you pass it the name of the image that you would like to use.
getIconURL(String, String) - Method in class org.kepler.reporting.rio.Item
 
getId() - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.SortableResultRecord
Method to get id
getId() - Method in class org.ecoinformatics.seek.querybuilder.DBQueryDefTable
Returns the Id
getId() - Method in class org.ecoinformatics.seek.querybuilder.DBTableFrame
 
getID() - Method in class org.geon.PolygonUtil
 
getId() - Method in class org.geon.RockSample
 
getID() - Method in class org.kepler.job.JobManager
 
getId() - Method in class org.kepler.kar.karxml.KarXml
 
getId() - Method in class org.kepler.moml.NamedObjId
 
getId() - Method in class org.kepler.objectmanager.ActorMetadata
return the lsid of the actor class object
getId() - Method in class org.kepler.objectmanager.data.DataObjectDescription
Return the unique ID for this data item.
getId() - Method in class org.kepler.objectmanager.data.db.AttributeList
 
getId() - Method in class org.kepler.tagging.gui.TagBarDisplayUI
 
getId() - Method in class org.kepler.tagging.gui.TagBarInsertionUI
 
getId() - Method in class org.kepler.tagging.gui.TagBarUI
 
getId(NamedObj) - Static method in class org.kepler.webview.server.WebViewId
Get the web view id for a NamedObj.
getID() - Method in class ptolemy.vergil.actor.PortConnectSite
Return the ID specified in the constructor.
getID() - Method in class ptolemy.vergil.toolbox.PortSite
Return the ID for this site, which is the number of the port.
getIdAttributeFor(NamedObj) - Static method in class org.kepler.moml.NamedObjId
Return the NamedObjId associated with the given NamedObj or null if no associated NamedObjId.
getIdentifier() - Method in class ptolemy.data.expr.ASTPtAssignmentNode
 
getIdentity() - Method in class org.kepler.bio.util.BlastTabularResult
 
getIdFor(NamedObj) - Static method in class org.kepler.moml.NamedObjId
Return the LSID for the given NamedObj.
getIDListAttributeFor(NamedObj) - Static method in class org.kepler.moml.NamedObjId
Return the KeplerIDListAttribute associated with the given NamedObj or null if no KeplerIDListAttribute exists.
getImage() - Method in class ptolemy.actor.gui.ImageTokenEffigy
Return the image represented by this effigy.
GetImage() - Method in class ptolemy.data.expr.SimpleCharStream
Get token literal value.
GetImage() - Method in class ptolemy.moml.unit.SimpleCharStream
Get token literal value.
getImageURL(String, String) - Static method in class org.kepler.reporting.gui.DragAndDropPanel
 
getImmediateDependencies(int) - Method in class org.kepler.provenance.DefaultQuery
 
getImmediateDependencies(int) - Method in interface org.kepler.provenance.Queryable
Get the token(s) that generated a token.
getImmediateDependencies(int) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the immediate tokens that generated a token.
getImpClassName() - Method in class org.kepler.hadoop.util.DDPPatternActorUtil
 
getImportedKARRunLSID(String) - Method in class org.kepler.util.RemoteStoreRunsTracker
From the tracker file, get the LSID of the WorkflowRun post KAR-import.
getImports(String) - Method in class org.mlc.swing.layout.ComponentDef
 
getImports() - Method in class org.mlc.swing.layout.NewComponentDialog
Get the component's <imports> section.
getImpulses() - Method in class ptolemy.plot.Plot
Return whether a line will be drawn from any plotted point down to the x axis.
getImpulses() - Method in interface ptolemy.plot.PlotInterface
Return whether a line will be drawn from any plotted point down to the x axis.
getIncomingPort() - Method in class ptolemy.domains.modal.kernel.State
Return the incoming port.
getIncomingPort() - Method in interface ptolemy.kernel.util.Flowable
Return the incoming port.
getIndentPrefix(int) - Static method in class ptolemy.util.StringUtilities
Return a number of spaces that is proportional to the argument.
getIndex(String, String) - Method in class com.microstar.xml.driver.SAXDriver
 
getIndex(String) - Method in class com.microstar.xml.driver.SAXDriver
 
getIndex() - Method in class org.kepler.objectmanager.library.LibraryManager
 
getIndex() - Method in class ptolemy.actor.sched.FixedPointDirector
Return the current index of the director.
getIndex() - Method in interface ptolemy.actor.SuperdenseTimeDirector
Return a superdense time index for the current time.
getIndex() - Method in class ptolemy.domains.de.kernel.DEDirector
Return a superdense time index for the current time, where the index is equal to the microstep.
getIndex() - Method in class ptolemy.domains.modal.kernel.FSMDirector
Return a superdense time index for the current time.
getIndexColumns(String) - Method in class org.kepler.util.sql.Table
Get the column(s) for an index.
getIndexes() - Method in class ptolemy.math.Interpolation
Return the reference indexes.
getIndexFile() - Method in class org.kepler.sms.util.OntologyConfiguration
 
getIndexForName(JComboBox, String) - Method in class org.ecoinformatics.seek.querybuilder.DBWherePanel
Returns the index of a String item in a combobox
getIndexOfChild(Object, Object) - Method in class org.kepler.gui.FilteredVisibleTreeModel
 
getIndexOfChild(Object, Object) - Method in class org.kepler.gui.SubsetWorkflowOutlineTreeModel
Return the index of the given child within the given parent.
getIndexOfChild(Object, Object) - Method in class org.kepler.gui.WorkflowOutlineTreeModel
Return the index of the given child within the given parent.
getIndexOfChild(Object, Object) - Method in class org.kepler.profiling.gui.WorkflowOutlineTreeActorFireModel
Return the index of the given child within the given parent.
getIndexOfChild(Object, Object) - Method in class org.sdm.spa.gui.XMLUIP.DomToTreeModelAdapter
 
getIndexOfChild(Object, Object) - Method in class ptolemy.vergil.tree.ClassAndEntityTreeModel
Return the index of the given child within the given parent.
getIndexOfChild(Object, Object) - Method in class ptolemy.vergil.tree.CompositeTreeModel
Return the index of the given child within the given parent.
getIndexOfChild(Object, Object) - Method in class ptolemy.vergil.tree.EntityTreeModel
Return the index of the given child within the given parent.
getIndexOfChild(Object, Object) - Method in class ptolemy.vergil.tree.FullTreeModel
Return the index of the given child within the given parent.
getIndexType(String) - Method in class org.kepler.util.sql.Table
Get the index type.
getIndexValue() - Method in class org.kepler.objectmanager.repository.EcogridRepositoryResults
All EcogridRepositoryResults produced by a single call to parseKarXml() will be assigned the same index value so they can later be put under a common KAR file.
getIndices - Variable in class org.kepler.actor.ArrayFilter
If true, return the indices of the array values within (or equals) min and max.
getInfo(File) - Static method in class org.kepler.gis.util.RasterUtilities
Get a RasterInfo object for a raster file.
getInfo() - Method in class org.kepler.gui.popups.LibraryPopup
 
getInfo() - Method in class ptolemy.domains.modal.kernel.ia.InterfaceAutomaton
Return a high-level description of this automaton.
GetInfo - Class in ptolemy.domains.modal.kernel.test
Display the high-level information of interface automata to stdout.
GetInfo(String[]) - Constructor for class ptolemy.domains.modal.kernel.test.GetInfo
Write the high-level description of the interface automaton to stdout.
getInfo() - Method in class ptolemy.graph.test.TestConstant
Return the information of this term.
getInfo() - Method in class ptolemy.graph.test.TestVariable
Return the information of this term.
getInitialState() - Method in class ptolemy.domains.modal.kernel.FSMActor
Return the initial state of this actor.
getInjector() - Static method in class ptolemy.actor.injection.PtolemyInjector
Return the PtolemyInjector.
getInputController() - Method in class ptolemy.actor.process.CompositeProcessDirector
Return the input branch controller of this director.
getInputMethods() - Method in class org.sdm.spa.SoaplabServiceClient
To get a list of all the InputMethods (set_) methods in the given WSDL of the client.Inputmethods were set via caliing the generateInputMethods().
getInputNames() - Method in class org.kepler.ddp.actor.ExecutionChoice
Get a list of file input names.
getInputNames(boolean) - Method in class org.kepler.ddp.actor.ExecutionChoice
Get a list of input port names.
getInputPortMappings(IOPort) - Method in class org.kepler.sms.actors.MergeActor
 
getInputPorts() - Method in class org.sdm.spa.util.ActorInspector
 
getInputRoleForTokenAndFireId(int, int) - Method in class org.kepler.provenance.DefaultQuery
 
getInputRoleForTokenAndFireId(int, int) - Method in class org.kepler.provenance.prov.ProvQuery
Get the input role (port name) of a token.
getInputRoleForTokenAndFireId(int, int) - Method in interface org.kepler.provenance.Queryable
Get the input role (port name) of a token.
getInputRoleForTokenAndFireId(int, int) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the input role (port name) of a token.
getInsertionIndexFromDrag() - Method in class org.ecoinformatics.seek.querybuilder.DBWhereModel
Returns the current insertion index depending on the current drag over item
getInsertionUI() - Method in class org.kepler.tagging.gui.TagBarUI
 
getInside(int) - Method in class ptolemy.actor.IOPort
Get a token from the specified inside channel of this port.
getInsideReceivers() - Method in class ptolemy.actor.IOPort
If the port is an opaque output port, return the receivers that receive data from all inside linked relations.
getInstance() - Static method in class com.jgoodies.forms.factories.DefaultComponentFactory
Returns the sole instance of this factory class.
getInstance() - Static method in class com.jgoodies.forms.util.DefaultUnitConverter
Lazily instantiates and returns the sole instance.
getInstance() - Static method in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreSchema
Returns the singleton
getInstance() - Static method in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
Method to get an object from this singleton class
getInstance() - Static method in class org.kepler.authentication.DomainList
 
getInstance() - Static method in class org.kepler.configuration.ConfigurationManager
singleton accessor
getInstance(boolean) - Static method in class org.kepler.configuration.ConfigurationManager
singleton accessor. set loadConfiguration to true if you want to load the configuration automatically.
getInstance(int) - Static method in enum org.kepler.ddp.Utilities.TokenType
 
getInstance() - Static method in class org.kepler.ExecutionEngine
singleton accessor
getInstance() - Static method in class org.kepler.gui.CanvasDropTargetListener
returns a singleton instance of this listener
getInstance() - Static method in class org.kepler.gui.ModelToFrameManager
Method for getting an instance of this singleton class.
getInstance() - Static method in class org.kepler.gui.PreferencesFrameTracker
Method for getting an instance of this singleton class.
getInstance() - Static method in class org.kepler.gui.state.StateChangeMonitor
Get the single instance of the StateChangeMonitor, creating it if needed.
getInstance() - Static method in class org.kepler.gui.TabManager
Method for getting an instance of this singleton class.
getInstance() - Static method in class org.kepler.gui.ViewManager
Method for getting an instance of this singleton class.
getInstance() - Static method in class org.kepler.kar.KARCacheManager
Method for getting an instance of this singleton class.
getInstance() - Static method in class org.kepler.kar.KARManager
 
getInstance() - Static method in class org.kepler.objectmanager.cache.CacheManager
create a new singleton instance of CacheManager
getInstance() - Static method in class org.kepler.objectmanager.cache.DataCacheManager
Get reference to the singleton DataCacheManager object.
getInstance() - Static method in class org.kepler.objectmanager.cache.LocalRepositoryManager
Method for getting an instance of this singleton class.
getInstance() - Static method in class org.kepler.objectmanager.library.LibraryManager
Method for getting an instance of this singleton class.
getInstance() - Static method in class org.kepler.objectmanager.lsid.LSIDGenerator
returns a singleton instance of this class
getInstance() - Static method in class org.kepler.objectmanager.ObjectManager
Method for getting an instance of this singleton class.
getInstance() - Static method in class org.kepler.objectmanager.repository.KARDownloader
 
getInstance() - Static method in class org.kepler.objectmanager.repository.RepositoryManager
Returns a singleton instance of this class
getInstance(WindowIdentifier) - Static method in class org.kepler.tagging.TaggingContextManager
 
getInstance() - Static method in class org.kepler.util.AuthNamespace
Method for getting an instance of this singleton class.
getInstance() - Static method in class org.kepler.util.WorkflowRenameManager
 
getInstance() - Static method in class org.kepler.workflow.WorkflowManager
 
getInstance() - Static method in class org.kepler.workflowrunmanager.WorkflowRunManagerManager
 
getInstance() - Static method in class org.kepler.workflowrunmanager.WRMDefaults
 
getInstance(Map<String, Object>) - Method in class org.mlc.swing.layout.ButtonBarComponentBuilder
 
getInstance(Map<String, Object>) - Method in interface org.mlc.swing.layout.ComponentBuilder
Returns an instance of this object given the specified properties
getInstance(Map<String, Object>) - Method in class org.mlc.swing.layout.DefaultComponentBuilder
 
getInstance(Map<String, Object>) - Method in class org.mlc.swing.layout.JListComponentBuilder
 
getInstance(Map<String, Object>) - Method in class org.mlc.swing.layout.JTableComponentBuilder
 
getInstance(Map<String, Object>) - Method in class org.mlc.swing.layout.JToolBarComponentBuilder
 
getInstance(Map<String, Object>) - Method in class org.mlc.swing.layout.JTreeComponentBuilder
 
getInstance() - Method in class org.mlc.swing.layout.NewComponentDialog
Get an instance of the specified component.
getInstance(Map<String, Object>) - Method in class org.mlc.swing.layout.SeparatorComponentBuilder
 
getInstance(Class<T>) - Method in class ptolemy.actor.injection.Injector
Get implementation for the provided interface based on the mappings loaded into the injector.
getInstance(boolean) - Static method in class ptolemy.data.BooleanToken
Return the instance of this class corresponding to the given boolean value.
getInstanceKeys() - Static method in class org.kepler.tagging.TaggingContextManager
 
getInstances() - Static method in class org.kepler.tagging.TaggingContextManager
 
getInt(int) - Method in class org.json.JSONArray
Get the int value associated with an index.
getInt(String) - Method in class org.json.JSONObject
Get the int value associated with a key.
getIntAttrId(Node, String) - Static method in class org.ecoinformatics.seek.querybuilder.DBUIUtils
Looks up the attr and returns the int of it or returns -1
getIntegerBitLength() - Method in class ptolemy.math.Precision
Return the number of bits representing the integer part.
getIntegerBitLength() - Method in class ptolemy.math.Quantization
Return the number of bits representing the integer part of the mantissa.
getIntegerMatrices - Variable in class ptolemy.matlab.Expression
If true, all double-valued matrix results are checked to see if all elements represent integers, and if so, an IntMatrixToken is returned, default is false for performance reasons.
getIntegratorAuxVariableCount() - Method in class ptolemy.domains.continuous.kernel.ContinuousODESolver
Return the number of auxiliary variables that an integrator should provide when solving the ODE.
getIntegratorAuxVariableCount() - Method in class ptolemy.domains.continuous.kernel.solver.ExplicitRK23Solver
Return the number of time increments plus one (to store the truncation error).
getIntegratorAuxVariableCount() - Method in class ptolemy.domains.continuous.kernel.solver.ExplicitRK45Solver
Return the number of time increments plus one (to store the truncation error).
getInterface(Class<T>) - Method in class org.kepler.scriptengine.java.JavaScriptEngine
 
getInterface(Object, Class<T>) - Method in class org.kepler.scriptengine.java.JavaScriptEngine
 
getInternalClassName() - Method in class org.kepler.objectmanager.ActorMetadata
return the internal class name of the actor object. for composites this will be ptolemy.actor.TypedCompositeActor.
getInterpreter() - Method in class org.sdm.spa.gui.DoubleShellTextAreaPanel
Get the interpreter that has been registered with setInterpreter().
getInterpreter() - Method in class ptolemy.gui.ShellTextArea
Get the interpreter that has been registered with setInterpreter().
getInterpreter() - Method in class ptolemy.gui.UserDialog
Get the interpreter that has been registered with setInterpreter().
getInterval() - Method in class org.kepler.workflowscheduler.gui.Schedule
Get the interval of the schedule
getIntervalUnit() - Method in class org.kepler.workflowscheduler.gui.IntervalUnitComboBoxAction
Get the interval unit after doing a selection
getIntervalUnit() - Method in class org.kepler.workflowscheduler.gui.Schedule
Get the interval unit
getIntMatrices - Variable in class ptolemy.matlab.Engine.ConversionParameters
If true, double matrices where all elements represent integers are returned as IntMatrixTokens (default false).
getIntValue(String) - Method in class ptolemy.gui.Query
Get the current value in the entry with the given name and return as an integer.
getInverseDistance2dGrid(Vector, String, String, float, float) - Method in class com.numericsolutions.geomodeltools.invdist_power_isosearch2d
This is the interpolation function for this class, it does an Inverse Distance Weighted (IDW) Interpolation, using a user-defined weight coefficient, and serach radius.
getIOBytesForPort(KeplerLSID, Integer, String, boolean) - Method in class org.kepler.provenance.DefaultQuery
Get the number of bytes read or written by a port.
getIOBytesForPort(KeplerLSID, Integer, String, boolean) - Method in interface org.kepler.provenance.Queryable
Get the number of bytes read or written by a port.
getIOBytesForPort(KeplerLSID, Integer, String, boolean) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the number of bytes read or written by a port.
getIOPortEventListeners() - Method in class ptolemy.actor.IOPort
Get the listeners for IOPortEvents.
getIOPorts(NamedObj) - Static method in class org.kepler.sms.SMSServices
Get all the io ports
getIsDone() - Method in class org.ecoinformatics.seek.dataquery.DBTablesGenerator
Method to get isDone status of generationg table
getIsImageEntity() - Method in class org.kepler.objectmanager.data.db.Entity
If this entity for SpatialRaster or SpatialVector
getIsSelected() - Method in class org.ecoinformatics.seek.ecogrid.SelectableDocumentType
Method to get selected status
getIsSelected() - Method in interface org.ecoinformatics.seek.ecogrid.SelectableObjectInterface
Method to get selected status
getIsSelected() - Method in class org.ecoinformatics.seek.ecogrid.SelectableServiceName
Method to get selected status
getIsTarFile() - Method in class org.ecoinformatics.seek.datasource.EcogridDataCacheItem
If this item is a tar file
getItemByName(String) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableOverviewModel
Returns DBSelectTableModelItem by name
getItemLeft() - Method in class org.ecoinformatics.seek.querybuilder.DBTableJoinItem
Return Left side item of Join
getItemProperties() - Method in class org.kepler.reporting.rio.Item
 
getItemRight() - Method in class org.ecoinformatics.seek.querybuilder.DBTableJoinItem
Return Right side item of Join
getItems() - Method in class org.kepler.objectmanager.library.LibIndex
Get all of the items.
getItems() - Method in class org.kepler.reporting.rio.ReportColumn
 
getItems(String, String) - Method in class org.sdm.spa.XMLUtil
 
getItemsOfType(int) - Method in class org.kepler.objectmanager.library.LibIndex
Get all items of the given type.
getItemsOfType(int, int) - Method in class org.kepler.objectmanager.library.LibIndex
Return items of the given type that are somewhere under the given root.
getItemVector() - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelBase
Resturns the items vector
getIterationCount() - Method in class ptolemy.actor.Manager
Return the iteration count, which is the number of iterations that have been started (but not necessarily completed).
getIterationCount() - Method in class ptolemy.actor.sched.ScheduleElement
Return the iteration count for this schedule.
getIterationCount() - Method in class ptolemy.graph.sched.ScheduleElement
Return the iteration count for this schedule.
getIterations() - Method in class ptolemy.domains.sdf.kernel.SDFDirector
Return the number of iterations.
getJars() - Method in class org.kepler.ddp.actor.pattern.AtomicPatternActor
Get a comma-separated list of jars to use with this actor.
getJars() - Method in interface org.kepler.ddp.actor.pattern.DDPPatternActor
Get a comma-separated list of jars to use with this actor.
getJars() - Method in class org.kepler.ddp.actor.pattern.SingleInputPatternActor
Get a comma-separated list of jars to use with this actor.
getJarsForLanguage(String) - Static method in class org.kepler.ddp.Utilities
Get the jars for a language.
getJavaFileForOutput(JavaFileManager.Location, String, JavaFileObject.Kind, FileObject) - Method in class org.kepler.scriptengine.java.MemoryJavaFileManager
 
getJGraph() - Method in class org.kepler.gui.frame.TabbedKeplerGraphFrame
Return the JGraph instance that this view uses to represent the ptolemy model.
getJGraph() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Return the JGraph instance that this view uses to represent the ptolemy model.
getJobConfig(String) - Method in class org.geon.LidarJobDB
 
getJobDescription() - Method in class org.geon.LidarJobConfig
 
getJobDescription(String) - Method in class org.geon.LidarJobDB
Get a job description
getJobId() - Method in class org.geon.LidarJobConfig
 
getJobID() - Method in class org.kepler.job.Job
Get the key of the Job object in the hash table.
getJobId() - Method in class org.sdm.spa.SoaplabServiceClient
To get the client's job Id which was created in setJobID via "createEmptyJob".
getJobStatus() - Method in class org.geon.LidarJobConfig
 
getJobStatus(String) - Method in class org.geon.LidarJobDB
 
getJobTitle() - Method in class org.geon.LidarJobConfig
 
getJobURI() - Method in class org.geon.LidarJobConfig
 
getJobURL() - Method in class org.geon.LidarJobConfig
 
getJoins() - Method in class org.ecoinformatics.seek.querybuilder.DBQueryDef
Returns a vector of pairs of items, meaning this vector MUST have an even number of items.
getJoins() - Method in class org.ecoinformatics.seek.querybuilder.DBTableJoin
Returns the Vector of Joins
getJSCopier() - Method in class ptolemy.vergil.basic.ExportParameters
Get the composite entity that is copying JavaScript and related files; return null if they are not being copied.
getJSONArray(int) - Method in class org.json.JSONArray
Get the JSONArray associated with an index.
getJSONArray(String) - Method in class org.json.JSONObject
Get the JSONArray value associated with a key.
getJSONObject(int) - Method in class org.json.JSONArray
Get the JSONObject associated with an index.
getJSONObject(String) - Method in class org.json.JSONObject
Get the JSONObject value associated with a key.
getJTree() - Method in class org.kepler.gui.ComponentLibraryTab
 
getKARCacheContents() - Method in class org.kepler.kar.KARCacheManager
Return all of the KARCacheContents.
getKARCacheContents(String) - Method in class org.kepler.kar.KARCacheManager
Return all of the KARCacheContents matching the specified type.
getKARCacheContents(KeplerLSID) - Method in class org.kepler.kar.KARCacheManager
Return all of the KARCacheContents matching the specified lsid.
getKARCacheContents(File) - Method in class org.kepler.kar.KARCacheManager
Return all of the KARCacheContents in the specified KAR file.
getKarCached() - Method in class org.kepler.kar.KARCacheContent
 
getKARCacheErrors() - Method in class org.kepler.kar.KARCacheManager
 
getKarEntries() - Method in class org.kepler.kar.karxml.KarXml
 
getKAREntry(KeplerLSID) - Method in class org.kepler.kar.KARFile
returns a KAREntry for the given lsid.
getKarEntry() - Method in class org.kepler.objectmanager.repository.EcogridRepositoryResults
 
getKAREntryHandlers() - Method in class org.kepler.objectmanager.cache.CacheManager
 
getKAREntryLSIDs(Hashtable<KAREntry, InputStream>) - Method in class org.kepler.kar.KARBuilder
 
getKARFile() - Method in class org.kepler.gui.kar.KAREffigy
Get the KAR file.
getKarFile() - Method in class org.kepler.kar.KARBuilder
 
getKarFile() - Method in class org.kepler.kar.KARCacheContent
 
getKarFile() - Method in class org.kepler.moml.KAREntityLibrary
 
getKarFile() - Method in class org.kepler.moml.KARErrorEntityLibrary
 
getKARFileName(String) - Method in class org.kepler.util.RemoteStoreRunsTracker
From the tracker file, get the KAR file name for a run.
getKARFileName() - Method in class org.kepler.util.WorkflowRunBuilder
 
getKarFiles() - Method in class org.kepler.objectmanager.cache.LocalRepositoryManager
Return a list of all the KAR files that were found after calling scanReposForKarFiles()
getKARFileSize(String) - Method in class org.kepler.util.RemoteStoreRunsTracker
From the tracker file, get the KAR file size for a run.
getKARFileSize() - Method in class org.kepler.util.WorkflowRunBuilder
 
getKarLSID() - Method in class org.kepler.kar.KARBuilder
 
getKarLSID() - Method in class org.kepler.objectmanager.repository.EcogridRepositoryResults
return the lsid of the kar file associated with this component
getKARLSID(String) - Method in class org.kepler.util.RemoteStoreRunsTracker
From the tracker file, get the KAR LSID for a run.
getKARLSID() - Method in class org.kepler.util.WorkflowRunBuilder
 
getKarLSID() - Method in class org.kepler.workflowscheduler.gui.Schedule
Get the kar id associated with the workflow schedule object
getKarLSID() - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerPanel
Get the kar file id associated with the workflow.
getKarName() - Method in class org.kepler.objectmanager.repository.KARDownloader
 
getKARNamespaces() - Static method in class org.kepler.kar.KARFile
 
getKarPath() - Method in class org.kepler.objectmanager.repository.KARDownloader
 
getKARVersion() - Method in class org.kepler.kar.KARFile
 
getKarVersion() - Method in class org.kepler.kar.karxml.KarXml
 
getKARVersionsConfigProperty() - Static method in class org.kepler.kar.KARFile
 
getKarXml(KARFile) - Method in class org.kepler.kar.karxml.KarXmlGenerator
Get an XML file representation for a KARFile.
getKarXml() - Method in class org.kepler.kar.karxml.KarXmlGenerator
Get an XML file representation for a KARFile.
getKarXml() - Method in class org.kepler.moml.RemoteKAREntityLibrary
Get kar xml
getKarXml(String, String, boolean) - Static method in class org.kepler.objectmanager.repository.EcogridRepository
Return karXml for a docid from a repositoryName.
getKeplerGraphFrame() - Method in class org.kepler.tagging.WindowIdentifier
 
getKeplerLSID(TableauFrame) - Method in class org.kepler.workflow.WorkflowManager
Return a List of LSIDS that are associated with the given TableauFrame.
getKey() - Method in class org.kepler.hadoop.io.KeyValuePair
 
getKeys() - Method in class org.kepler.objectmanager.data.db.ForeignKey
Method to get keys
getKeys() - Method in class org.kepler.objectmanager.data.db.JoinConditionConstraint
Method to get keys
getKeys() - Method in class org.kepler.objectmanager.data.db.NotNullConstraint
Method to get keys
getKeys() - Method in class org.kepler.objectmanager.data.db.PrimaryKey
Method to get keys
getKeys() - Method in class org.kepler.objectmanager.data.db.UniqueKey
Method to get keys
getKeys() - Method in class ptolemy.util.OrderedResourceBundle
Get an Iterator over the Set of keys, allowing retrieval of the keys in the original order as listed in the properties file.
getKeyType() - Method in class org.kepler.objectmanager.data.db.DSTableFieldDef
 
getKeyType() - Method in class org.kepler.objectmanager.data.db.DSTableKeyDef
 
getKeyType() - Method in interface org.kepler.objectmanager.data.db.DSTableKeyIFace
Return whether it is a Primary or Secondary Key
getKeyValueType(Parameter, String) - Static method in class org.kepler.ddp.actor.pattern.Types
Get the Ptolemy type for a key-value type string.
getKeyValueTypes(Parameter, String) - Static method in class org.kepler.ddp.actor.pattern.Types
Get the Ptolemy types for a key-value type string.
getLabel() - Method in class org.ecoinformatics.seek.ecogrid.DocumentType
Method to get the readable name of this document type
getLabel() - Method in class org.kepler.objectmanager.data.db.Attribute
accessor method
getLabel(Token, int) - Static method in class org.kepler.reporting.rio.util.TokenUtil
 
getLabel() - Method in class org.kepler.sms.SemanticType
 
getLabel() - Method in class org.kepler.tagging.gui.CBItems.ExistingConceptCBItem
 
getLabel() - Method in class org.kepler.tagging.gui.DeletableColorIconLabelEvent
Get the label
getLabel() - Method in class ptolemy.domains.modal.kernel.ia.InterfaceAutomatonTransition
Return the label of this transition.
getLabel() - Method in class ptolemy.domains.modal.kernel.Transition
Return a string describing this transition.
getLabel() - Method in class ptolemy.vergil.toolbox.GraphicElement
Return the label of this graphic element.
getLabelComponentPadX() - Method in class com.jgoodies.forms.util.LayoutStyle
Returns a gap used to separate a label and associated control.
getLabelLocation() - Method in class ptolemy.vergil.actor.LayoutHint.LayoutHintItem
A Point2D representing the position where a label of an edge should be positioned.
getLabelNames() - Method in class ptolemy.data.expr.ASTPtUnionConstructNode
Return the list of label names for this union construct.
getLabelNameWithConcept(String) - Method in class org.kepler.sms.OntologyCatalog
 
getLabelNameWithConcept(NamedOntClass) - Method in class org.kepler.sms.OntologyCatalog
 
getLabelNameWithConcept(OWLOntology, OWLClass) - Method in class org.kepler.sms.OntologyCatalog
 
getLabelNameWithConcept(OWLClass) - Method in class org.kepler.sms.OntologyCatalog
 
getLabels() - Method in class org.kepler.reporting.rio.Item
 
getLabels() - Method in class ptolemy.moml.unit.Unit
Get the labels for a Unit.
getLabelsString() - Method in class ptolemy.moml.unit.Unit
Create a String that is the concatenation of all the labels.
getLanguageName() - Method in class org.kepler.scriptengine.java.JavaScriptEngineFactory
 
getLanguageVersion() - Method in class org.kepler.scriptengine.java.JavaScriptEngineFactory
 
getLastChosenTransition() - Method in class ptolemy.domains.modal.kernel.FSMActor
Deprecated.
getLastChosenTransitions() - Method in class ptolemy.domains.modal.kernel.FSMActor
Get the last chosen transitions.
getLastDirectory() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Get the directory that was last accessed.
getLastExecutionForWorkflow(KeplerLSID) - Method in class org.kepler.provenance.DefaultQuery
 
getLastExecutionForWorkflow(String) - Method in class org.kepler.provenance.DefaultQuery
 
getLastExecutionForWorkflow(KeplerLSID) - Method in interface org.kepler.provenance.Queryable
Get the last execution for a workflow.
getLastExecutionForWorkflow(String) - Method in interface org.kepler.provenance.Queryable
Get the last execution for a workflow.
getLastExecutionForWorkflow(KeplerLSID) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the last execution for a workflow.
getLastExecutionForWorkflow(String) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the last execution for a workflow.
getLastExecutionLSIDForWorkflow(String) - Method in class org.kepler.provenance.DefaultQuery
 
getLastExecutionLSIDForWorkflow(KeplerLSID) - Method in class org.kepler.provenance.DefaultQuery
 
getLastExecutionLSIDForWorkflow(String) - Method in interface org.kepler.provenance.Queryable
Get the last execution LSID for a workflow.
getLastExecutionLSIDForWorkflow(KeplerLSID) - Method in interface org.kepler.provenance.Queryable
Get the last execution LSID for a workflow.
getLastExecutionLSIDForWorkflow(String) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the last execution LSID for a workflow.
getLastExecutionLSIDForWorkflow(KeplerLSID) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the last execution LSID for a workflow.
getLastModifiedTimeOfFileInCache(String) - Method in class org.kepler.kar.KARCacheManager
Get the last modified time of a file in the cache.
getLastStartFireType() - Method in class org.kepler.provenance.FireState
Get the last starting firing type seen.
getLastSubprocessReturnCode() - Method in class ptolemy.gui.JTextAreaExec
Return the return code of the last subprocess that was executed.
getLastSubprocessReturnCode() - Method in interface ptolemy.util.ExecuteCommands
Return the return code of the last subprocess that was executed.
getLastSubprocessReturnCode() - Method in class ptolemy.util.StreamExec
Return the return code of the last subprocess that was executed.
getLastTakenTransitions() - Method in class ptolemy.domains.modal.kernel.FSMActor
Get the last taken transitions.
getLatest(int) - Method in class ptolemy.actor.lib.Recorder
Get the latest input for the specified channel.
getLayout() - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Returns the instance of FormLayout used to build this form.
getLayoutAlignmentX(Container) - Method in class com.jgoodies.forms.layout.FormLayout
Returns the alignment along the x axis.
getLayoutAlignmentX(Container) - Method in class org.mlc.swing.layout.ContainerLayout
 
getLayoutAlignmentY(Container) - Method in class com.jgoodies.forms.layout.FormLayout
Returns the alignment along the y axis.
getLayoutAlignmentY(Container) - Method in class org.mlc.swing.layout.ContainerLayout
 
getLayoutConstraintsManager(InputStream) - Static method in class org.mlc.swing.layout.LayoutConstraintsManager
Returns a LayoutConstraintsManager based on an input stream for an xml file.
getLayoutConstraintsManager(Node) - Static method in class org.mlc.swing.layout.LayoutConstraintsManager
Returns a layout constraints manager given a containers node.
getLayoutConstraintsManager() - Method in class ptolemy.actor.gui.run.CustomizableRunPane
Return the layout constraints manager for this pane.
getLayoutHintItem(Object, Object) - Method in class ptolemy.vergil.actor.LayoutHint
Get the LayoutHint.LayoutHintItem stored in this LayoutHint that is identified by the head and tail of the link for which it specifies bend points.
getLayoutInfo(Container) - Static method in class com.jgoodies.forms.debug.FormDebugUtils
Computes and returns the layout's grid origins.
getLayoutInfo(Container) - Method in class com.jgoodies.forms.layout.FormLayout
Computes and returns the horizontal and vertical grid origins.
getLayoutInfo(Container) - Method in class org.mlc.swing.layout.ContainerLayout
 
getLayouts() - Method in class org.mlc.swing.layout.LayoutConstraintsManager
 
getLeadingColumn() - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Returns the index of the leading column.
getLeadingColumn() - Method in class com.jgoodies.forms.builder.DefaultFormBuilder
Returns the leading column.
getLeadingColumnOffset() - Method in class com.jgoodies.forms.builder.DefaultFormBuilder
Returns the offset of the leading column, often 0 or 1.
getLeastSignificantBitPosition() - Method in class ptolemy.math.Precision
Return the bit position of the least significant bit of the given fixed point precision.
getLeft() - Method in class org.kepler.objectmanager.library.LibItem
 
getLegend(int) - Method in class ptolemy.plot.PlotBox
Get the legend for a dataset, or null if there is none.
getLegend(int) - Method in interface ptolemy.plot.PlotBoxInterface
Get the legend for a dataset, or null if there is none.
getLegendDataset(String) - Method in class ptolemy.plot.PlotBox
Given a legend string, return the corresponding dataset or -1 if no legend was added with that legend string The legend would have been set by addLegend().
getLegendDataset(String) - Method in interface ptolemy.plot.PlotBoxInterface
Given a legend string, return the corresponding dataset or -1 if no legend was added with that legend string The legend would have been set by addLegend().
getLength() - Method in class com.microstar.xml.driver.SAXDriver
 
getLength() - Method in class org.kepler.hadoop.io.input.TokenInputSplit
Get the number of bytes in the split.
getLength() - Method in class org.kepler.util.sql.Column
Get the length of the column's type.
getLesserTerm() - Method in class ptolemy.graph.Inequality
Return the lesser term of this inequality.
getLevel() - Method in class org.kepler.objectmanager.library.LibItem
 
getLexicalTokenList() - Method in class ptolemy.data.expr.ASTPtProductNode
Return the list of lexical tokens that were used to make this node.
getLexicalTokenList() - Method in class ptolemy.data.expr.ASTPtSumNode
Return the list of lexical tokens that were used to make this node.
getLhs() - Method in class ptolemy.moml.unit.UnitConstraint
Get the left hand side.
getLibrary() - Method in class ptolemy.moml.LibraryAttribute
Return the library specified by the configure() method or the setLibrary() method, or null if it has not been set.
getLibrary() - Static method in class ptolemy.moml.unit.UnitLibrary
Return the Library.
getLibraryColor(String) - Method in class org.kepler.sms.util.OntologyConfiguration
 
getLibraryNamedOntModels() - Method in class org.kepler.sms.OntologyCatalog
Provides the set of named ontology models used in the actor library
getLibraryOntologyNames() - Method in class org.kepler.sms.OntologyCatalog
The set of ontology names for use in the catalog
getLiid() - Method in class org.kepler.gui.component.ToggleLsidAction
 
getLiid() - Method in class org.kepler.gui.popups.LibraryPopup
 
getLiid() - Method in class org.kepler.objectmanager.library.LibItem
 
getLiidFor(ComponentEntity) - Static method in class org.kepler.objectmanager.library.LibraryManager
Return the Library Index ID for the given NamedObj or -1 if an ID cannot be found.
getLiidsFor(Vector<KeplerLSID>) - Method in class org.kepler.objectmanager.library.LibraryManager
Return the LIIDs for the given set of LSIDs.
getLine() - Method in exception com.microstar.xml.XmlException
Get the line number containing the error.
getLine() - Method in class ptolemy.data.expr.SimpleCharStream
Deprecated.
getLine() - Method in class ptolemy.moml.unit.SimpleCharStream
Deprecated.
getLineGapSpec() - Method in class com.jgoodies.forms.builder.DefaultFormBuilder
Returns the row specification that is used to separate component lines.
getLineNumber() - Method in class com.microstar.xml.driver.SAXDriver
 
getLineNumber() - Method in class com.microstar.xml.XmlParser
Return the current line number.
getLineNumber() - Method in class org.kepler.objectmanager.data.text.TextDelimitedDataFormat
 
getLineNumber() - Method in class org.kepler.objectmanager.data.text.TextWidthFixedDataFormat
Get line number
getLinePad() - Method in class com.jgoodies.forms.util.LayoutStyle
Returns a narrow vertical pad used to separate lines.
getLineStyles() - Method in class ptolemy.plot.Plot
Return false if setLineStyles() has not yet been called or if setLineStyles(false) has been called, which signifies that different line styles are not to be used.
getLineStyles() - Method in interface ptolemy.plot.PlotInterface
Return false if setLineStyles() has not yet been called or if setLineStyles(false) has been called, which signifies that different line styles are not to be used.
getLink() - Method in class ptolemy.vergil.actor.LinkManhattanConnector
Return the associated link.
getLinkDomainObjects() - Method in class org.kepler.sms.gui.SemanticLinkTable
 
getLinked() - Method in class org.ecoinformatics.seek.querybuilder.DBTableField
Return whether it is a link
getLinkedVertex() - Method in class ptolemy.moml.Vertex
Return the other vertex to which there is a path from this vertex, or null if there is none.
getLinkModel() - Method in class ptolemy.vergil.actor.ActorGraphModel
Return the model for edge objects that are instance of Link.
getList() - Method in class org.ecoinformatics.seek.querybuilder.DBTableFrame
Returns the DBTableList object (GUI)
getList() - Method in class org.kepler.io.DirectoryListing
Get the list itself.
getList(List<String>) - Static method in class org.kepler.modulemanager.gui.SuitesList
 
getList(List<String>, List<String>, DefaultListModel) - Static method in class org.kepler.modulemanager.gui.SuitesList
 
getListBounds() - Method in class org.ecoinformatics.seek.querybuilder.DBTableFrame
Return the bounds of the JList item in the frame
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class org.kepler.gui.ComponentLibraryTab.IconListRenderer
 
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class org.kepler.tagging.gui.ColoredListCellRenderer
 
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class org.kepler.workflowscheduler.gui.RepositoryAndRunEngineComboBoxRenderer
Display workflow run engine name
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class ptolemy.vergil.toolbox.PtolemyListCellRenderer
 
getListeners() - Method in class org.kepler.tagging.gui.OntologyDisplayUI
 
GetLiveMeasurements - Class in org.kepler.spark.mllib
Actor for retrieving weather station data from the Firemap web socket server.
GetLiveMeasurements(CompositeEntity, String) - Constructor for class org.kepler.spark.mllib.GetLiveMeasurements
Initializes the actor's parameters and Vertex property.
getLocalFiles() - Method in class org.kepler.job.Job
Return vector of local files that should be staged to the remote site for a job.
getLocality() - Method in class ptolemy.kernel.util.ChangeRequest
If a change is localized to a particular object and objects that it contains, then that object should be returned by this method.
getLocalKarFilePath() - Method in class org.kepler.workflowscheduler.gui.LocalRemoteWorkflowMap
 
getLocalName(int) - Method in class com.microstar.xml.driver.SAXDriver
 
getLocalName() - Method in class org.kepler.sms.NamedOntClass
 
getLocalRepoName() - Method in class org.kepler.kar.KARFile
Return the name of the local repository that this KAR is stored in.
getLocalRepositories() - Method in class org.kepler.objectmanager.cache.LocalRepositoryManager
 
getLocalRepositoryName(String) - Static method in class org.kepler.objectmanager.cache.LocalRepositoryManager
Get the display name of a local repository for a module.
getLocalTime() - Method in class ptolemy.actor.LocalClock
Get current local time.
getLocalTimeForCurrentEnvironmentTime() - Method in class ptolemy.actor.LocalClock
Get the local time that corresponds to the current environment time.
getLocalTimeForEnvironmentTime(Time) - Method in class ptolemy.actor.LocalClock
Get the local time that corresponds to the given environment time.
getLocalWorkdirPath() - Method in class org.kepler.job.Job
 
getLocation() - Method in class ptolemy.actor.parameters.LocationParameter
Get the location of the center of the container in some Cartesian coordinate system.
getLocation() - Method in interface ptolemy.kernel.util.Locatable
Get the location in some cartesian coordinate system.
getLocation() - Method in class ptolemy.kernel.util.Location
Get the center location in some cartesian coordinate system.
getLocation(NamedObj) - Static method in class ptolemy.vergil.actor.KielerLayoutUtil
Find a location for the given object.
getLocation(Object) - Method in class ptolemy.vergil.basic.LocatableNodeController
Return the desired location of this node.
getLocation() - Method in class ptolemy.vergil.basic.RelativeLocation
Get the location in some cartesian coordinate system.
getLocationContainer(String) - Method in class org.kepler.gui.ClassicViewPane
 
getLocationContainer(String) - Method in class org.kepler.gui.DefaultViewPane
 
getLocationContainer(String) - Method in class org.kepler.gui.DualVerticalViewPane
 
getLocationContainer(String) - Method in class org.kepler.gui.SingleViewPane
 
getLocationContainer(String) - Method in interface org.kepler.gui.ViewPane
This method must return the Container that represents the specified ViewPaneLocation.
getLocationPoint(NamedObj) - Static method in class ptolemy.vergil.actor.KielerLayoutUtil
Get the location given by the location attribute of the given input object.
getLocationPoint(Locatable) - Static method in class ptolemy.vergil.actor.KielerLayoutUtil
Retrieve the actual position from a locatable instance.
getLocations() - Method in class org.kepler.hadoop.io.input.TokenInputSplit
Get the host locations of the split.
getLong(int) - Method in class org.json.JSONArray
Get the long value associated with an index.
getLong(String) - Method in class org.json.JSONObject
Get the long value associated with a key.
getLongValue() - Method in class ptolemy.actor.util.Time
Return the long representation of the time value of this time object.
getLSID() - Method in class org.kepler.gui.RemoveCustomKeplerDocumentationAction
 
getLsid() - Method in class org.kepler.kar.KARCacheContent
 
getLsid() - Method in class org.kepler.kar.KARCached
 
getLsid() - Method in class org.kepler.kar.KARCacheError
 
getLSID() - Method in class org.kepler.kar.KAREntry
 
getLSID() - Method in class org.kepler.kar.KARFile
 
getLsid() - Method in class org.kepler.kar.karxml.KarXml
 
getLsid() - Method in class org.kepler.kar.karxml.KarXml.KarEntry
 
getLsid() - Method in class org.kepler.moml.KeplerActorMetadata
 
getLSID() - Method in class org.kepler.objectmanager.ActorMetadata
returns the id of this object as a KeplerLSID
getLsid() - Method in class org.kepler.objectmanager.cache.CacheContent
 
getLSID() - Method in class org.kepler.objectmanager.cache.CacheObject
get the lsid for this object
getLSID() - Method in interface org.kepler.objectmanager.cache.CacheObjectInterface
get the lsid for this object
getLsid() - Method in class org.kepler.objectmanager.library.LibItem
 
getLSID() - Method in class org.kepler.objectmanager.repository.EcogridRepositoryResults
return the lsid (entityId) of the component
getLsid() - Method in class org.kepler.reporting.roml.ReportLayout
 
getLsidAuthority() - Method in class org.kepler.objectmanager.repository.Repository
 
getLsidDependencies() - Method in class org.kepler.kar.KAREntry
 
getLSIDFor(NamedObj) - Method in class org.ecoinformatics.seek.sms.KeplerLocalLSIDService
 
getLSIDPath() - Method in class org.kepler.objectmanager.repository.Repository
return the lsid service path
getLsids() - Method in class org.kepler.objectmanager.library.LibItem
 
getLSIDServerURL() - Method in class org.kepler.objectmanager.repository.EcogridRepository
return the url for the lsid service associated with this repository
getLSIDServerURL() - Method in class org.kepler.objectmanager.repository.Repository
get the url for the lsid service associated with this repository
getLsidToOpen() - Method in class org.kepler.gui.component.OpenCompositeAction
 
getLsidToView() - Method in class org.kepler.gui.lsid.LibLsidViewerAction
 
getLsidToView() - Method in class org.kepler.gui.ShowDocumentationAction
 
getMainAttribute(String) - Method in class org.kepler.kar.KARManifest
get a main manifest attribute
getMainPanel() - Method in class org.ecoinformatics.seek.ecogrid.EcogridPreferencesTab
Method to get the main panel.
getMajor() - Method in class org.ptolemy.commons.ThreeDigitVersionSpecification
Return the major (leading) verson digit.
getMajorVersion() - Method in class org.kepler.util.sql.DatabaseType
Get the major version of the schema from the version table.
getMajorVersion() - Method in class org.kepler.util.sql.Schema
Get the major version.
getMalformed() - Method in class org.kepler.util.WorkflowRunBuilder
 
getManager() - Static method in class org.kepler.authentication.AuthenticationManager
Part of singleton template, the only way to get an instance of AuthenticationManager
getManager() - Static method in class org.kepler.sms.OntologyCatalog
 
getManager() - Method in interface ptolemy.actor.Actor
Return the Manager, if there is one.
getManager() - Method in class ptolemy.actor.AtomicActor
Return the Manager responsible for execution of this actor, if there is one.
getManager() - Method in class ptolemy.actor.CompositeActor
Get the manager responsible for execution of this composite actor.
getManager() - Method in class ptolemy.domains.modal.kernel.FSMActor
Return the Manager responsible for execution of this actor, if there is one.
getManifest() - Method in class org.kepler.kar.KARBuilder
 
getManifestVersion() - Method in class org.kepler.kar.karxml.KarXml
 
getMantissaBitLength() - Method in class ptolemy.math.Quantization
Return the number of bits to represent the mantissa.
getMantissaPrecision() - Method in class ptolemy.math.FixPointQuantization
Return the precision of the mantissa of the value.
getMantissaPrecision() - Method in class ptolemy.math.Quantization
Return the precision fore the mantissa of a compliant 2's complement representation.
getManualUrl() - Method in class org.kepler.sms.NamedOntClass
 
getMap() - Method in class org.kepler.provenance.ProvenanceEvent
 
getMap(String, String) - Static method in class org.kepler.workflowscheduler.gui.LocalRemoteWorkflowMappingController
Get the map which has the given local kar file path and the repository name
getMappedName() - Method in class org.ecoinformatics.seek.querybuilder.DBTableFrame
Returns the mapped name of the table
getMappedName() - Method in class org.kepler.objectmanager.data.db.DSTableDef
Gets the name of mapped table
getMappedName() - Method in interface org.kepler.objectmanager.data.db.DSTableIFace
Returns the "mapped" name of the table (might be physical table name)
getMappedName() - Method in class org.kepler.objectmanager.data.db.Entity
Return the name for this data item.
getMappings() - Method in class org.kepler.sms.actors.MergeActor
 
getMappings() - Method in class org.kepler.sms.actors.MergeEditorDialog
 
getMarksStyle() - Method in class ptolemy.plot.Plot
Get the marks style, which is one of "none", "points", "dots", or "various".
getMarksStyle() - Method in interface ptolemy.plot.PlotInterface
Get the marks style, which is one of "none", "points", "dots", or "various".
getMasterAndPortAddress(String) - Static method in class org.kepler.spark.actor.SparkConnection
Parse a string containing the master host and port and return the socket address.
getMatrixTypeForElementType(Type) - Static method in class ptolemy.data.type.MatrixType
Return a matrix type whose element type is the given element type.
getMax() - Method in class org.kepler.objectmanager.data.DataType
return the maximum in the range for the type
getMaxDataSets() - Method in class ptolemy.plot.Plot
Deprecated. 
getMaxDataSets() - Method in interface ptolemy.plot.PlotInterface
Deprecated. 
getMaxFrequencyOverall() - Method in class org.sdm.spa.actors.piw.viz.SiteCollection
 
getMaxFrequencyPerSequence() - Method in class org.sdm.spa.actors.piw.viz.SiteCollection
 
getMaximum() - Method in class org.kepler.monitor.figure.ProgressBarFigure
Gets the maximum value in the range associated for a determinate progress bar.
getMaximumDifference() - Method in class ptolemy.domains.modal.kernel.RelationList
Return the maximum current difference of all the relations by iterating the relation list.
getMaximumSequenceLength() - Method in class org.sdm.spa.actors.piw.viz.SequenceCollection
 
getMaximumSize() - Method in class ptolemy.gui.Query
Return the preferred height, but set the width to the maximum possible value.
getMaximumSize() - Method in class ptolemy.media.Picture
Return the maximum size.
getMaximumUnscaledValue() - Method in class ptolemy.math.Precision
Return the maximum integer value before scaling so that quantization levels are represented by adjacent integers.
getMaximumUnscaledValue() - Method in class ptolemy.math.Quantization
Return the maximum quantizable value after scaling so that quantization levels are represented by adjacent integers.
getMaximumValue() - Method in class ptolemy.math.Quantization
Return the maximum quantizable value.
getMaxmum() - Method in class org.kepler.objectmanager.data.DateTimeDomain
 
getMaxmum() - Method in class org.kepler.objectmanager.data.NumericDomain
 
getMaxNormalizedKeyLen() - Method in class org.kepler.stratosphere.type.ByteArray
 
getMaxValue() - Method in class ptolemy.actor.parameters.IntRangeParameter
Return the maximum value of this parameter as an integer.
getMeasurementScale() - Method in class org.kepler.objectmanager.data.db.Attribute
accessor method
getMenu() - Method in class org.kepler.gui.KeplerGraphFrame.Components
Get the menu.
getMenuBar() - Method in class org.ecoinformatics.seek.querybuilder.QBApp
Returns the menubar
getMessage() - Method in exception com.microstar.xml.XmlException
Get the error message from the parser.
getMessage() - Method in exception ptolemy.actor.process.TerminateProcessException
Get the detail message.
getMessage() - Method in class ptolemy.actor.test.TestTypeListener
Return the last type change message.
getMessage() - Method in error ptolemy.data.expr.TokenMgrError
You can also modify the body of this method to customize your error messages.
getMessage() - Method in exception ptolemy.kernel.util.KernelException
Get the message of this exception.
getMessage() - Method in exception ptolemy.kernel.util.KernelRuntimeException
Get the message of this exception.
getMessage() - Method in error ptolemy.moml.unit.TokenMgrError
You can also modify the body of this method to customize your error messages.
getMessageHandler() - Static method in class ptolemy.util.MessageHandler
Return the message handler instance that is used by the static methods in this class.
getMessages() - Method in class ptolemy.kernel.util.RecorderListener
Get the messages recorded so far.
getMessages() - Method in class ptolemy.moml.test.RecorderErrorHandler
Get the messages recorded so far.
getMessages() - Method in class ptolemy.util.test.RecorderMessageHandler
Get the messages recorded so far.
getMetadata() - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.GetMetadataAction
Method to get the metadata(the generated html file after transfering original metadata)
getMetadata() - Method in class org.kepler.objectmanager.cache.ActorCacheObject
Return the ActorMetadata for this actor.
GetMetadataAction - Class in org.ecoinformatics.seek.ecogrid.quicksearch
This is an action to get metadata for search result item in data search result panel
GetMetadataAction(ResultRecord) - Constructor for class org.ecoinformatics.seek.ecogrid.quicksearch.GetMetadataAction
Constructor base a given ResultRecord object
GetMetadataAction(TableauFrame) - Constructor for class org.ecoinformatics.seek.ecogrid.quicksearch.GetMetadataAction
 
getMetadataSpecificationClassName() - Method in class org.ecoinformatics.seek.ecogrid.DocumentType
Method to get metadata specification class name for this document type
getMethod() - Method in class ptolemy.data.expr.CachedMethod
Return the method giving the operation associated with this object, or null if none was found.
getMethodCallSyntax(String, String, String...) - Method in class org.kepler.scriptengine.java.JavaScriptEngineFactory
 
getMethodName() - Method in class ptolemy.data.expr.ASTPtMethodCallNode
Return the name of the method invoked by this node.
getMicro() - Method in class org.ptolemy.commons.ThreeDigitVersionSpecification
Return the micro (third) verson digit.
getMicrosecond() - Method in class ptolemy.data.DateToken
Get the microsecond part of this date.
getMicrostep() - Method in class ptolemy.domains.de.kernel.DEDirector
Get the current microstep.
getMillisecond() - Method in class ptolemy.data.DateToken
Get the millisecond part of this date.
getMimeType() - Method in class ptolemy.vergil.basic.export.web.DefaultTitle
A title is of type text/html.
getMimeType() - Method in class ptolemy.vergil.basic.export.web.HTMLImage
Return image plus the appropriate file extension, e.g. image/gif
getMimeType() - Method in class ptolemy.vergil.basic.export.web.HTMLText
HTMLText is of type text/html.
getMimeType() - Method in class ptolemy.vergil.basic.export.web.IconLink
A link is of type text/html.
getMimeType() - Method in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
BasicJSPlotter is of type text/html.
getMimeType() - Method in class ptolemy.vergil.basic.export.web.Script
Script is of type text/javascript for backwards compatibility.
getMimeType() - Method in class ptolemy.vergil.basic.export.web.Title
A title is of type text/html.
getMimeType() - Method in interface ptolemy.vergil.basic.export.web.WebExportable
Return the Mime type of the content (for example, text/html).
getMimeTypes() - Method in class org.kepler.scriptengine.java.JavaScriptEngineFactory
 
getMin() - Method in class org.kepler.objectmanager.data.DataType
return the minimum in the range for the type
getMinimum() - Method in class org.kepler.monitor.figure.ProgressBarFigure
Gets the minimum value in the range associated for a determinate progress bar.
getMinimum() - Method in class org.kepler.objectmanager.data.DateTimeDomain
 
getMinimum() - Method in class org.kepler.objectmanager.data.NumericDomain
 
getMinimumConsensusLength() - Method in class org.sdm.spa.actors.piw.viz.SequenceCollection
 
getMinimumSize() - Method in class ptolemy.media.Picture
Return the minimum size.
getMinimumUnscaledValue() - Method in class ptolemy.math.Precision
Return the minimum integer value before scaling so that quantization levels are represented by adjacent integers.
getMinimumUnscaledValue() - Method in class ptolemy.math.Quantization
Return the minimum quantizable value after scaling so that quantization levels are represented by adjacent integers.
getMinimumValue() - Method in class ptolemy.math.Quantization
Return the minimum quantizable value.
getMinimumWidth() - Method in class org.kepler.gui.LibrarySearchPane
get the preferred/minimum width of this panel - calculated to allow enough space for all buttons and spacers etc
getMinimumWidth() - Method in class org.kepler.gui.SearchUIJPanel
get the preferred/minimum width of this panel - calculated to allow enough space for all buttons and spacers etc
getMinimumWidth() - Method in class org.kepler.gui.SimpleSearchUIPane
get the preferred/minimum width of this panel - calculated to allow enough space for all buttons and spacers etc
getMinor() - Method in class org.ptolemy.commons.ThreeDigitVersionSpecification
Return the minor (middle) verson digit.
getMinorVersion() - Method in class org.kepler.util.sql.DatabaseType
Get the minor version of the schema from the version table.
getMinorVersion() - Method in class org.kepler.util.sql.Schema
Get the minor version.
getMinute() - Method in class ptolemy.data.DateToken
Get the minute part of this date.
getMinValue() - Method in class ptolemy.actor.parameters.IntRangeParameter
Return the minimum value of this parameter.
getMismatches() - Method in class org.kepler.bio.util.BlastTabularResult
 
getMissingDependencies() - Method in class org.kepler.kar.KARFile
Get a map of missing module dependencies.
getMissingValueCode() - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
Method to return the vector which store the missing value code.
getMissingValueCode() - Method in class org.ecoinformatics.seek.querybuilder.DBTableField
Method to return the vector which store the missing value code.
getMissingValueCode() - Method in class org.kepler.objectmanager.data.DataObjectDescription
Method to return the vector which store the missing value code.
getMissingValueCode() - Method in interface org.kepler.objectmanager.data.db.DSTableFieldIFace
Method to return the vector which store the missing value code.
getMissingValueCode() - Method in class org.kepler.objectmanager.data.db.DSTableKeyDef
Method to return the vector which store the missing value code.
getModel() - Method in class org.ecoinformatics.seek.querybuilder.DBTableFrame
Gets the ListModel
getModel() - Method in class org.ecoinformatics.seek.querybuilder.DBWherePanel
Returns the model
getModel(String) - Static method in class org.kepler.ddp.director.DDPEngine
Get the model for a specific name.
getModel(String, String, String, boolean, String) - Static method in class org.kepler.ddp.Utilities
Load the model for a stub from a Nephele Configuration.
getModel() - Method in class org.kepler.sms.NamedOntClass
 
getModel() - Method in class org.kepler.sms.OntologyRow
 
getModel() - Method in class org.kepler.tagging.TagReloadType.TagCacheChange
 
getModel() - Method in class org.kepler.workflow.Workflow
 
getModel() - Method in class org.sdm.spa.gui.DoubleShellTAPEffigy
Return the model used to store variables.
getModel() - Method in class ptolemy.actor.gui.exec.ExecShellEffigy
Return the model used to store variables.
getModel() - Method in class ptolemy.actor.gui.ExpressionShellEffigy
Return the model used to store variables.
getModel() - Method in class ptolemy.actor.gui.ModelPane
Get the associated model.
getModel() - Method in class ptolemy.actor.gui.properties.GUIAction
Get the model contained in the current frame.
getModel() - Method in class ptolemy.actor.gui.ptjacl.TclShellEffigy
Return the model used to store variables.
getModel() - Method in class ptolemy.actor.gui.PtolemyEffigy
Return the ptolemy model that this is an effigy of.
getModel() - Method in class ptolemy.actor.gui.PtolemyFrame
Get the associated model or Ptolemy II object.
getModel() - Method in class ptolemy.actor.gui.python.PythonShellEffigy
Return the model used to store variables.
getModelContainer() - Method in class ptolemy.actor.lib.ExceptionManagerModel
Return the ExceptionManager that contains the model.
getModelErrorHandler() - Method in class ptolemy.kernel.util.NamedObj
Get the model error handler specified by setErrorHandler().
getModelFullName() - Method in class org.kepler.gui.TabbedCompositeTabComponent
 
getModelHashtable() - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelStd
Return the model hashtable
getModelHashtable() - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
Method to get model hash
getModelNextIterationTime() - Method in class ptolemy.actor.Director
Return the next time of interest in the model being executed by this director or the director of any enclosing model up the hierarchy.
getModelNextIterationTime() - Method in class ptolemy.actor.sched.FixedPointDirector
Return the next time of interest in the model being executed by this director or the director of any enclosing model up the hierarchy.
getModelNextIterationTime() - Method in class ptolemy.domains.de.kernel.DEDirector
Return the timestamp of the next event in the queue.
getModelNextIterationTime() - Method in class ptolemy.domains.modal.kernel.FSMDirector
Override the base class so that if any outgoing transition has a guard that evaluates to true, then return the current time.
getModelNextIterationTime() - Method in class ptolemy.domains.sdf.kernel.SDFDirector
Return the time value of the next iteration.
getModelStartTime() - Method in class ptolemy.actor.Director
Return the start time parameter value, if it has been explicitly set.
getModelStopTime() - Method in class ptolemy.actor.Director
Return the stop time parameter value, if it has been set, and otherwise, return a time with value Double.POSITIVE_INFINITY.
getModelStopTime() - Method in class ptolemy.actor.lib.PoissonClock
Get the stop time.
getModelStopTime() - Method in class ptolemy.actor.lib.TimedSource
Get the stop time.
getModelTime() - Method in class ptolemy.actor.AbstractReceiver
Return the current time associated with this receiver.
getModelTime() - Method in class ptolemy.actor.Director
Return the current time object of the model being executed by this director.
getModelTime(int) - Method in class ptolemy.actor.IOPort
Return the current time associated with a certain channel.
getModelTime(int, boolean) - Method in class ptolemy.actor.IOPort
Return the current time associated with a certain channel.
getModelURI(NamedObj) - Static method in class ptolemy.kernel.attributes.URIAttribute
Return the URI from which the specified model was read, or null if there is no such URI.
getModifiedLinkDomainObjects() - Method in class org.kepler.sms.gui.SemanticLinkTable
FIXME: Fill in...
getModifiedVariable() - Method in class ptolemy.actor.lib.SetVariable
Return the (presumably Settable) attribute modified by this actor.
getModifiedVariables() - Method in class ptolemy.actor.lib.SetVariable
Return a list of variables that this entity modifies.
getModifiedVariables() - Method in interface ptolemy.actor.util.ExplicitChangeContext
Return a list of variables that this entity modifies.
getModifiedVariables() - Method in class ptolemy.domains.modal.kernel.FSMActor
Return a list of variables that this entity modifies.
getModifiedVariables() - Method in class ptolemy.domains.modal.kernel.FSMDirector
Return a list of variables that are modified in a modal model.
getModifiedVariables() - Method in class ptolemy.domains.sdf.lib.VariableLattice
Return a list of variables that this entity modifies.
getModifiedVariables() - Method in class ptolemy.domains.sdf.lib.VariableRecursiveLattice
Return a list of variables that this entity modifies.
getModule(String) - Static method in class org.kepler.configuration.ConfigurationManager
get a module by name. return null if not found
getModule() - Method in class org.kepler.configuration.ConfigurationProperty
return the module associated with this property
getModuleDependencies() - Method in class org.kepler.kar.KARFile
 
getModuleDependencies() - Method in class org.kepler.kar.karxml.KarXml
 
getModuleDependencies() - Method in class org.kepler.util.WorkflowRun
Get the WorkflowRun module-dependencies.
getModules() - Static method in class ptolemy.actor.injection.ActorModuleInitializer
Get Modules used by the initializer.
getModuloUnscaledValue() - Method in class ptolemy.math.Quantization
Deprecated.
?
getMoml(NamedObj) - Method in class org.kepler.moml.GetMomlFromLSID
Get the MoMl for an actor represented by the NameObj 'dropObj'
getMoml(NamedObj) - Method in class org.kepler.objectmanager.repository.AlternateGetMoml
 
getMoml(NamedObj, String) - Method in class ptolemy.actor.DesignPatternGetMoMLAction
Generate the Moml string for the given object.
getMoML(Writer) - Method in class ptolemy.data.ActorToken
Output the MoML of the enclosed entity to the given writer.
getMoMLFilters() - Static method in class ptolemy.moml.MoMLParser
Get the List of MoMLFilters used to translate names.
getMoMLForExecution(int) - Method in class org.kepler.provenance.DefaultQuery
 
getMoMLForExecution(KeplerLSID) - Method in class org.kepler.provenance.DefaultQuery
 
getMoMLForExecution(int) - Method in class org.kepler.provenance.prov.ProvQuery
Get the MoML for an execution.
getMoMLForExecution(int) - Method in interface org.kepler.provenance.Queryable
Get workflow MoML for an execution.
getMoMLForExecution(KeplerLSID) - Method in interface org.kepler.provenance.Queryable
Get workflow MoML for an execution LSID
getMoMLForExecution(int) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get workflow MoML for an execution, using execution id
getMoMLForExecution(KeplerLSID) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get workflow MoML for an execution, using execution lsid.
getMoMLForExecutionLSIDs(List<KeplerLSID>) - Method in class org.kepler.provenance.DefaultQuery
 
getMoMLForExecutionLSIDs(List<KeplerLSID>) - Method in interface org.kepler.provenance.Queryable
Get workflow MoMLs for a list of execution lsids.
getMoMLForExecutionLSIDs(List<KeplerLSID>) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get workflow MoMLs for a list of execution lsids.
GetMomlFromLSID - Class in org.kepler.moml
This class returns moml given an LSID.
GetMomlFromLSID() - Constructor for class org.kepler.moml.GetMomlFromLSID
Constructor
getMonth() - Method in class ptolemy.data.DateToken
Get the month part of this date.
getMostSignificantBitPosition() - Method in class ptolemy.math.Precision
Return the bit position of the most significant bit of the given fixed point precision.
getMostSignificantDataBitPosition() - Method in class ptolemy.math.Precision
Return the bit position of the most significant data bit of the given fixed point precision.
getMultiValuePairsMap(ConfigurationProperty) - Static method in class org.kepler.configuration.ConfigurationUtilities
Get a map of name value pairs in the property where each key can have multiple values.
getName(int) - Method in class com.microstar.xml.driver.SAXDriver
 
getName() - Method in class org.camera.service.NameValuePair
 
getName() - Method in class org.cipres.kepler.DisplayObject
Get the object name
getName() - Method in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreMetaDataSpecification
 
getName() - Method in class org.ecoinformatics.seek.datasource.eml.eml2.EML2MetadataSpecification
 
getName() - Method in class org.ecoinformatics.seek.ecogrid.MetadataSpecificationInterface
 
getName() - Method in class org.ecoinformatics.seek.querybuilder.DBQueryDefTable
 
getName() - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
Return the name
getName() - Method in class org.ecoinformatics.seek.querybuilder.DBTableDesktopPane
Returns the name of the schema
getName() - Method in class org.ecoinformatics.seek.querybuilder.DBTableField
Return the name
getName() - Method in class org.ecoinformatics.seek.querybuilder.DBTableFrame
Returns the name of the table
getName() - Method in interface org.ecoinformatics.seek.querybuilder.DBWhereIFace
The objects name
getName() - Method in interface org.ecoinformatics.seek.querybuilder.QBBuilderInterface
A textual name for this builder
getName() - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneAdvanced
A textual name for this builder
getName() - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneIntermediate
A textual name for this builder
getName() - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
A textual name for this builder
getName() - Method in class org.kepler.actor.rest.NameValuePair
 
getName() - Method in class org.kepler.configuration.ConfigurationProperty
return the name of this property
getName() - Method in class org.kepler.dataproxy.metadata.ADN.ADNMetadataSpecification
 
getName() - Method in class org.kepler.ddp.director.DDPEngine
Get the name of the engine.
getName() - Method in class org.kepler.gui.ViewPaneLocation
Return the name of this ViewPaneLocation.
getName() - Method in class org.kepler.hadoop.util.DDPPatternActorUtil
 
getName() - Method in class org.kepler.io.FileInfo
 
getName() - Method in class org.kepler.kar.KARCacheContent
 
getName() - Method in class org.kepler.kar.KARCached
 
getName() - Method in class org.kepler.kar.KARCacheError
 
getName() - Method in class org.kepler.kar.karxml.KarXml
 
getName() - Method in class org.kepler.kar.karxml.KarXml.KarEntry
 
getName() - Method in class org.kepler.moml.KeplerActorMetadata
 
getName() - Method in class org.kepler.objectmanager.ActorMetadata
return the name of the actor
getName() - Method in class org.kepler.objectmanager.cache.CacheContent
 
getName() - Method in class org.kepler.objectmanager.cache.CacheObject
get the name of this object
getName() - Method in interface org.kepler.objectmanager.cache.CacheObjectInterface
get the name of this object
getName() - Method in class org.kepler.objectmanager.data.DataObjectDescription
Return the name for this data item.
getName() - Method in class org.kepler.objectmanager.data.DataType
return the minimum in the range for the type
getName() - Method in class org.kepler.objectmanager.data.db.DSSchemaDef
Returns the name
getName() - Method in interface org.kepler.objectmanager.data.db.DSSchemaIFace
Returns name of schema
getName() - Method in class org.kepler.objectmanager.data.db.DSTableDef
Gets the name of table
getName() - Method in interface org.kepler.objectmanager.data.db.DSTableFieldIFace
Returns one or more names.
getName() - Method in interface org.kepler.objectmanager.data.db.DSTableIFace
Returns the name of the table
getName() - Method in class org.kepler.objectmanager.data.db.DSTableKeyDef
Returns one or more names.
getName() - Method in class org.kepler.objectmanager.data.db.ForeignKey
Method to get constraint name
getName() - Method in class org.kepler.objectmanager.data.db.JoinConditionConstraint
Method to get constraint name
getName() - Method in class org.kepler.objectmanager.data.db.PrimaryKey
Method to get constrain name
getName() - Method in class org.kepler.objectmanager.data.db.UniqueKey
Method to get constrain name
getName() - Method in class org.kepler.objectmanager.library.LibItem
 
getName() - Method in class org.kepler.objectmanager.repository.EcogridRepositoryResults
return the name of the component
getName() - Method in class org.kepler.objectmanager.repository.Repository
get the name of the repository
getName() - Method in class org.kepler.reporting.rio.Item
 
getName() - Method in class org.kepler.reporting.rio.StaticReportItem
 
getName() - Method in class org.kepler.reporting.rio.StaticReportItemImage
 
getName() - Method in class org.kepler.reporting.rio.StaticReportItemSection
 
getName() - Method in class org.kepler.reporting.rio.StaticReportItemText
 
getName() - Method in class org.kepler.reporting.roml.ReportLayout
 
getName() - Method in class org.kepler.sms.NamedOntClass
 
getName() - Method in class org.kepler.sms.NamedOntModel
 
getName() - Method in class org.kepler.sms.NamedOntProperty
 
getName() - Method in class org.kepler.tagging.gui.CBItems.ExistingConceptCBItem
 
getName() - Method in class org.kepler.tagging.gui.CBItems.TruncatedNamedOntClass
 
getName() - Method in class org.kepler.util.ProvenanceStore
 
getName() - Method in class org.kepler.util.sql.Column
Get the name.
getName() - Method in enum org.kepler.util.sql.DatabaseFactory.Parameter
Get the name of the parameter.
getName() - Method in class org.kepler.util.sql.DatabaseType
Get the name of the database type.
getName() - Method in class org.kepler.util.sql.HSQL
Get the name of the type.
getName() - Method in class org.kepler.util.sql.MySQL
Get the name of the type.
getName() - Method in class org.kepler.util.sql.Oracle
Get the name of the type.
getName() - Method in class org.kepler.util.sql.PostgreSQL
Get the name of the type.
getName() - Method in class org.kepler.util.sql.Table
Get the table name.
getName() - Method in class org.kepler.workflowscheduler.gui.WorkflowRunEngine
Get the name of the workflow run engine
getName() - Method in class org.mlc.swing.layout.BeanProperty
Returns the value of the name property
getName() - Method in class org.mlc.swing.layout.ContainerLayout
Returns the value of the name property
getName() - Method in class ptolemy.actor.FiringEvent.FiringEventType
Return the string name of this event type.
getName() - Method in class ptolemy.data.expr.ASTPtLeafNode
Return the name that this node refers to.
getName() - Method in class ptolemy.gui.QueryChooser
Returns the name of the component.
getName(Nameable) - Static method in exception ptolemy.kernel.util.KernelException
Get the name of a Nameable object.
getName() - Method in interface ptolemy.kernel.util.Nameable
Return the name of the object.
getName(NamedObj) - Method in interface ptolemy.kernel.util.Nameable
Get the name of this object relative to the specified container.
getName() - Method in class ptolemy.kernel.util.NamedObj
Get the name.
getName(NamedObj) - Method in class ptolemy.kernel.util.NamedObj
Get the name of this object relative to the specified container.
getName() - Method in class ptolemy.kernel.util.test.TestNullNamedObj
Get the name.
getName() - Method in class ptolemy.kernel.util.Workspace
Get the name.
getName(NamedObj) - Method in class ptolemy.kernel.util.Workspace
Get the name.
getName(String) - Static method in class ptolemy.math.Overflow
Return an instance of this class with the specified name, or null if none exists.
getName(String) - Static method in class ptolemy.math.Rounding
Return an instance of this class with the specified name, or null if none exists.
getName() - Method in class ptolemy.vergil.toolbox.FigureAction.SourceType
Get the name of the SourceType.
getNameable1() - Method in exception ptolemy.kernel.util.KernelException
Get the first Nameable, if any, that was passed as an argument.
getNameable2() - Method in exception ptolemy.kernel.util.KernelException
Get the second Nameable, if any, that was passed as an argument.
getNameables() - Method in exception ptolemy.kernel.util.KernelRuntimeException
Get the first Nameable, if any, that was passed as an argument.
getNamedClass(String) - Method in class org.kepler.sms.NamedOntModel
 
getNamedClasses() - Method in class org.kepler.sms.NamedOntModel
gets a list of the named classes in the ontology
getNamedObj(String) - Static method in class org.kepler.webview.server.WebViewId
Get the NamedObj for a specific id.
getNamedOntClass(SemanticType) - Method in class org.kepler.sms.OntologyCatalog
Maps semantic types to their NamedOntClass objects.
getNamedOntClass(String, String) - Method in class org.kepler.sms.OntologyCatalog
Maps namespaces and local names to NamedOntClass objects
getNamedOntClass(String, boolean) - Method in class org.kepler.sms.OntologyCatalog
Returns class name with the given concept id in the ontologies managed by the catalog.
getNamedOntClass(String) - Method in class org.kepler.sms.OntologyCatalog
Returns class name with the given concept id in the ontologies managed by the catalog.
getNamedOntClasses() - Method in class org.kepler.sms.gui.OntoClassSelectionJPanel
Provides access to the selected ontology classes
getNamedOntClassFlavor() - Static method in class org.kepler.sms.gui.NamedOntClassTransferable
The only flavor associated with this transferable
getNamedOntClassFor(SemanticType) - Static method in class org.kepler.sms.SMSServices
 
getNamedOntClassFor(String) - Static method in class org.kepler.sms.SMSServices
 
getNamedOntModel(String) - Method in class org.kepler.sms.OntologyCatalog
Get the named ontology model with the given name
getNamedOntModel() - Method in class org.kepler.tagging.gui.OntologyDisplaySelectionEvent
 
getNamedOntModels() - Method in class org.kepler.sms.OntologyCatalog
 
getNamedOntModels(boolean) - Method in class org.kepler.sms.OntologyCatalog
Provides the set of named ontology models
getNamedProperties(boolean) - Method in class org.kepler.sms.NamedOntClass
 
getNamedProperties(boolean) - Method in class org.kepler.sms.NamedOntModel
gets a list of the named properties in the ontology
getNamedSubClasses(boolean) - Method in class org.kepler.sms.NamedOntClass
 
getNamedSubProperties(boolean) - Method in class org.kepler.sms.NamedOntProperty
 
getNamedSuperClasses(boolean) - Method in class org.kepler.sms.NamedOntClass
 
getNamedSuperProperties(boolean) - Method in class org.kepler.sms.NamedOntProperty
 
getNames(JSONObject) - Static method in class org.json.JSONObject
Get an array of field names from a JSONObject.
getNames(Object) - Static method in class org.json.JSONObject
Get an array of field names from an Object.
getNames() - Method in class org.kepler.objectmanager.data.DataType
 
getNames() - Method in class org.kepler.scriptengine.java.JavaScriptEngineFactory
 
getNames() - Static method in class org.kepler.util.sql.DatabaseFactory
Get all the type names.
getNameSpace() - Method in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200Parser
Get the name space of the document
getNamespace() - Method in class org.ecoinformatics.seek.ecogrid.DocumentType
Method to get namespace of the document type
getNamespace() - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.ResultRecord
Get the namespace of this record.
getNamespace() - Method in class org.kepler.configuration.ConfigurationNamespace
get the property that caused this event
getNamespace() - Method in class org.kepler.configuration.ConfigurationProperty
return the namepace
getNamespace() - Method in class org.kepler.dataproxy.datasource.geon.GEONDatabaseResource
Get the namespace of this record.
getNamespace() - Method in class org.kepler.dataproxy.datasource.geon.GEONShpResource
Get the namespace of this record.
getNamespace() - Method in class org.kepler.objectmanager.lsid.KeplerLSID
returns the namespace component of this lsid
getNameSpace() - Method in class org.kepler.sms.NamedOntClass
 
getNameSpace() - Method in class org.kepler.sms.NamedOntModel
 
getNamespace() - Method in class org.kepler.sms.SemanticType
Gets the namespace attribute of the SemanticTypeParam object
getNamespace() - Method in class org.kepler.util.AuthNamespace
 
getNamesValues() - Method in class org.kepler.provenance.RecordingParameters
Get all the parameter name-value pairs.
getNanosecond() - Method in class ptolemy.data.DateToken
Get the nanosecond part of this date.
getNarrowLinePad() - Method in class com.jgoodies.forms.util.LayoutStyle
Returns a narrow vertical pad used to separate lines.
getNeedToDoAForceExport() - Method in class org.kepler.gui.kar.ImportModuleDependenciesAction
 
getNewAuthorizedNamespace() - Method in class org.kepler.util.AuthNamespace
Don't use this method.
getNewFiles(boolean) - Method in class org.kepler.io.DirectoryListing
Get the list of 'new' files, i.e. that are in currentList and not in prevList.
getNewLSID() - Method in class org.kepler.objectmanager.lsid.LSIDGenerator
Return a new LSID using the Authority and Namespace for this Kepler Instance and the NextObjectID for this instance with a revision number of 1.
getNewPortLocation(GraphPane, BasicGraphFrame, IOPort) - Static method in class ptolemy.vergil.basic.WithIconGraphController
Get a location for a port that hasn't got a location yet.
getNewRange() - Method in class org.kepler.tagging.Transition
 
getNewString() - Method in class org.kepler.tagging.TagReloadType.SearchStringChange
 
getNewType() - Method in class ptolemy.actor.TypeEvent
Return the new type.
getNextEventTime() - Method in class ptolemy.domains.de.kernel.DEDirector
Return the timestamp of the next event in the queue.
getNextId(IOPort, int) - Method in class org.kepler.provenance.PortConnector
Get the next Id for an input port and channel.
getNextIterationTime() - Method in class ptolemy.actor.Director
Deprecated.
As of Ptolemy II 4.1, replaced by Director.getModelNextIterationTime()
getNextObject(KeplerLSID) - Method in class org.kepler.objectmanager.repository.EcogridRepository
returns the next object for the given lsid
getNextPort() - Method in class ptolemy.actor.lib.test.TestOrderedMerge
Return the port that this actor will read from on the next invocation of the fire() method.
getNextRevision(KeplerLSID) - Method in class org.kepler.objectmanager.repository.EcogridRepository
returns the next revision for the given lsid
getNextStopFiringType() - Method in class org.kepler.provenance.FireState
Get the expected firing type for stopping the firing iteration.
getNextTier() - Method in class ptolemy.vergil.actor.DocManager
Return next tier, if there is one.
getNextToken() - Method in class ptolemy.data.expr.MatrixParser
Get the next Token.
getNextToken() - Method in class ptolemy.data.expr.MatrixParserTokenManager
Get the next Token.
getNextToken() - Method in class ptolemy.data.expr.PtParser
Get the next Token.
getNextToken() - Method in class ptolemy.data.expr.PtParserTokenManager
Get the next Token.
getNextToken() - Method in class ptolemy.moml.unit.UParser
Get the next Token.
getNextToken() - Method in class ptolemy.moml.unit.UParserTokenManager
Get the next Token.
getNextUnusedGraphId() - Method in class org.kepler.gui.PlotsEditorPanel
 
getNodeController(Object) - Method in class ptolemy.vergil.actor.ActorViewerGraphController
Return the node controller appropriate for the given object.
getNodeController(Object) - Method in class ptolemy.vergil.basic.BasicGraphController
Return the node controller appropriate for the given object.
getNodeController(Object) - Method in class ptolemy.vergil.icon.EditIconGraphController
Return the node controller appropriate for the specified object.
getNodeController(Object) - Method in class ptolemy.vergil.modal.FSMViewerGraphController
Return the node controller appropriate for the given node.
getNodeCount(Object) - Method in class ptolemy.vergil.actor.ActorGraphModel.IconModel
Return the number of nodes contained in this graph or composite node.
getNodeCount(Object) - Method in class ptolemy.vergil.kernel.CompositePtolemyModel
Return the number of nodes contained in the graph for the specified composite.
getNodeList() - Method in class ptolemy.graph.NonLatticeCounterExample
Return the list of node weights in the graph associated with this counter example.
getNodeModel(Object) - Method in class ptolemy.vergil.actor.ActorGraphModel
Return the node model for the given object.
getNodeModel(Object) - Method in class ptolemy.vergil.basic.AbstractBasicGraphModel
Return the node model for the given object.
getNodeModel(Object) - Method in class ptolemy.vergil.modal.FSMGraphModel
Return the node model for the given object.
getNodeValue(Node) - Static method in class org.ecoinformatics.seek.querybuilder.DBUIUtils
------------------------------------------------------------ Gets the String value of a node.
getNonpreemptiveTransitionsReferredInputPorts(State) - Method in class ptolemy.domains.modal.kernel.NonStrictFSMDirector
Given a state, get a set of input ports referred in the guards of the preemptive transitions leaving that state.
getNormal(Point2D, Point2D) - Static method in class ptolemy.vergil.actor.KielerLayoutUtil
Get the angle in radians from the origin to the other point.
getNormal() - Method in class ptolemy.vergil.toolbox.PortSite
Get the normal of the site.
getNotationPublicId(String) - Method in class com.microstar.xml.XmlParser
Look up the public identifier for a notation.
getNotationSystemId(String) - Method in class com.microstar.xml.XmlParser
Look up the system identifier for a notation.
getNotConstVariables(NamedObj) - Method in class ptolemy.actor.util.ConstVariableModelAnalysis
Return the computed not constant variables for the given container.
getNumberMissingDataPixels() - Method in class org.ecoinformatics.seek.gis.java_gis.Grid
 
getNumberOfArguments() - Method in class ptolemy.data.expr.ExpressionFunction
Return the number of arguments of the function.
getNumberOfArguments() - Method in interface ptolemy.data.Function
Return the number of arguments of the function.
getNumberOfArguments() - Method in class ptolemy.data.FunctionToken
Return the number of arguments of the function.
getNumberOfBits() - Method in class ptolemy.math.Precision
Return the total number of bits.
getNumberOfBits() - Method in class ptolemy.math.Quantization
Return the number of bits to represent the value.
getNumberOfFirings() - Method in class org.kepler.provenance.FireState
Return the number of firings seen.
getNumberOfLevels() - Method in class ptolemy.math.Precision
Return the total number of discrete values possible.
getNumberOfLevels() - Method in class ptolemy.math.Quantization
Return the number of quantization levels in the mantissa.
getNumberOfLinks() - Method in class ptolemy.vergil.actor.PortTerminal
Return the number of links to relations that this port has.
getNumberPixelsWithValue(double, double) - Method in class org.ecoinformatics.seek.gis.java_gis.Grid
 
getNumberType() - Method in class org.kepler.objectmanager.data.DataType
return the type of the data type.
getNumCategories() - Static method in class ptolemy.data.unit.UnitUtilities
Return the number of currently registered categories.
getNumCategories() - Static method in class ptolemy.moml.unit.UnitLibrary
Return the number of categories.
getNumChildern() - Method in class org.ecoinformatics.seek.querybuilder.DBWhereOperator
Returns the number of children
getNumDataSets() - Method in class ptolemy.plot.Plot
Return the actual number of data sets.
getNumDataSets() - Method in interface ptolemy.plot.PlotInterface
Return the actual number of data sets.
getNumerator() - Method in class ptolemy.math.Fraction
Return the numerator of this fraction.
getNumFooterLines() - Method in class org.kepler.objectmanager.data.db.Entity
get the number of footer lines in the entity
getNumHeaderLines() - Method in class org.kepler.objectmanager.data.db.Entity
get the number of header lines in the entity
getNumItems() - Method in class org.ecoinformatics.seek.querybuilder.DBJoinPrcTable
 
getNumItems() - Method in class org.kepler.workflowrunmanager.DurationQueryParse
 
getNumItems() - Method in class org.kepler.workflowrunmanager.ExecIdQueryParse
 
getNumItems() - Method in class org.kepler.workflowrunmanager.StartTimeQueryParse
 
getNumRecords() - Method in class org.kepler.objectmanager.data.db.Entity
gets the number of records in the table entity
getNumResults() - Method in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreMetaDataSpecification
 
getNumResults() - Method in class org.ecoinformatics.seek.datasource.eml.eml2.EML2MetadataSpecification
 
getNumResults() - Method in class org.ecoinformatics.seek.ecogrid.MetadataSpecificationInterface
 
getNumResults() - Method in class org.kepler.dataproxy.metadata.ADN.ADNMetadataSpecification
 
getNumRows() - Method in class org.geon.LidarJobConfig
 
getNumTasks() - Method in class org.kepler.job.Job
 
getObj() - Method in class org.kepler.tagging.TagEvent
 
getObject() - Method in class org.cipres.kepler.DisplayObject
Get the object
getObject(Object) - Method in class org.kepler.gui.KeplerMenuHandler
pass the menuMapper back to the calling object
getObject() - Method in class org.kepler.objectmanager.cache.ActorCacheObject
this returns an ActorMetadata object.
getObject(KeplerLSID) - Method in class org.kepler.objectmanager.cache.CacheManager
return the CacheObjectInterface with the specified lsid.
getObject() - Method in class org.kepler.objectmanager.cache.CacheObject
return the java object associated with this CacheObject
getObject() - Method in interface org.kepler.objectmanager.cache.CacheObjectInterface
return the java object associated with this CacheObject
getObject() - Method in class org.kepler.objectmanager.cache.DataCacheObject
 
getObject() - Method in class org.kepler.objectmanager.cache.RawDataCacheObject
This returns a file object pointing to the data file.
getObject() - Method in class org.kepler.objectmanager.cache.ReportLayoutCacheObject
This returns a reportLayout object from file.
getObject() - Method in class org.kepler.objectmanager.cache.WorkflowRunCacheObject
create a WorkflowRun from workflowRunString
getObject() - Method in class org.kepler.objectmanager.lsid.KeplerLSID
returns the object component of this lsid
getObject() - Method in class org.kepler.tagging.gui.DeletableColorIconLabel
Get the text object of the icon
getObject() - Method in class ptolemy.actor.gui.RenameConfigurer
Get the object upon which this RenameConfigurer is operating.
getObject(Object) - Method in interface ptolemy.actor.gui.TopPack
Get an object.
getObject() - Method in class ptolemy.data.type.test.TestToken
Return the object contained by this token.
getObjectInRefinement(String) - Method in class ptolemy.domains.modal.kernel.State
Get a NamedObj with the given name in the refinement of this state, if any.
getObjectRevision(KeplerLSID) - Method in class org.kepler.objectmanager.ObjectManager
 
getObjects() - Method in class org.kepler.sms.SemanticTypeManager
Obtain all objects in this manager.
getObjectType(KeplerLSID) - Method in class org.kepler.objectmanager.ObjectManager
 
getObjectValue(String) - Method in class ptolemy.gui.Query
Get the current value in the entry with the given name, and return as an Object.
getOldRange() - Method in class org.kepler.tagging.Transition
 
getOldString() - Method in class org.kepler.tagging.TagReloadType.SearchStringChange
 
getOldType() - Method in class ptolemy.actor.TypeEvent
Return the old type.
getOlOpxCpxDiagraminSVG() - Static method in class org.geon.TernaryDiagram
 
getOntClass() - Method in class org.kepler.sms.gui.SemanticTypeBrowserSelectionEvent
 
getOntClasses() - Method in class org.kepler.tagging.TagCache
 
getOntModels() - Method in class org.ecoinformatics.seek.sms.OntologyCatalog
Gets the ontModels attribute of the OntologyCatalog object
getOntModels() - Method in class org.kepler.sms.OntologyCatalog
Gets the ontModels attribute of the OntologyCatalog object
getOntology() - Method in class org.kepler.sms.NamedOntClass
 
getOntology() - Method in class org.kepler.sms.NamedOntModel
 
getOntology() - Method in class org.kepler.tagging.gui.CBItems.ExistingConceptCBItem
 
getOntologyLabel(OWLOntology) - Static method in class org.kepler.sms.Util
 
getOntologyName() - Method in class org.kepler.sms.NamedOntClass
 
getOntologyName(String) - Method in class org.kepler.sms.OntologyCatalog
Maps the namespace of an ontology to the given ontology name
getOntologyNames() - Method in class org.kepler.sms.OntologyCatalog
The set of ontology names in the catalog
getOpenException() - Method in class org.kepler.gui.kar.OpenArchiveAction
Return any exception generated while trying to open the KAR.
getOpenFrames() - Static method in class org.kepler.gui.KeplerGraphFrame
 
getOperator() - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
Returns the operator name
getOperator() - Method in class org.kepler.workflowrunmanager.DurationQueryParse
 
getOperator() - Method in class org.kepler.workflowrunmanager.ExecIdQueryParse
 
getOperator() - Method in class org.kepler.workflowrunmanager.StartTimeQueryParse
 
getOperator() - Method in class ptolemy.data.expr.ASTPtBitwiseNode
Return the token that represents the operation of this node.
getOperator() - Method in class ptolemy.data.expr.ASTPtLogicalNode
Return the operator for child nodes of this node.
getOperator() - Method in class ptolemy.data.expr.ASTPtRelationalNode
Return the lexical token representing the operation of this node.
getOperator() - Method in class ptolemy.data.expr.ASTPtShiftNode
Return the lexical token representing the operation of this node.
getOperator() - Method in class ptolemy.data.expr.ASTPtUnaryNode
Return the token that represents the operation of this node.
getOperator() - Method in class ptolemy.moml.unit.UnitConstraint
 
getOption(String) - Method in interface org.kepler.webview.actor.WebViewable
Get a parameter that is an option for the client.
getOption(String) - Method in class org.kepler.webview.actor.WebViewAttribute
 
getOptions() - Method in interface org.kepler.webview.actor.WebViewable
Get a list of parameters to send as options to the client.
getOptions() - Method in class org.kepler.webview.actor.WebViewAttribute
 
getOrder() - Method in class ptolemy.math.Interpolation
Return the interpolation order.
getOrderIndex(LinkManhattanConnector) - Method in class ptolemy.vergil.actor.PortTerminal
Return the order index of the connection represented by the specified connector.
getOrderLimit() - Static method in class ptolemy.data.SmoothToken
Get the maximum order of any token (the number of derivatives).
getOrganization() - Method in class org.kepler.authentication.gui.LDAPLoginGUI
return the org
getOrientation() - Method in class org.kepler.monitor.figure.BaseFigure
 
getOrientation() - Method in class org.kepler.objectmanager.data.db.Entity
gets the orientation of the table entity
getOriginalMenuItemsMap(NamedObj, boolean) - Method in class org.kepler.gui.KeplerContextMenuFactory
get Map of name/value pairs containing menu paths of original PTII context- menu items, and their correspondign Action objects
getOriginalMenuItemsMap(NamedObj, boolean) - Method in class org.kepler.gui.KeplerSchematicContextMenuFactory
OVERRIDES PARENT CLASS TO SET isWorkflow TO TRUE get Map of name/value pairs containing menu paths of original PTII context- menu items, and their correspondign Action objects
getOriginalRunLSID(String) - Method in class org.kepler.util.RemoteStoreRunsTracker
From the tracker file, get the original LSID of the WorkflowRun in the KAR.
getOriginalRunLSIDs() - Method in class org.kepler.util.RemoteStoreRunsTracker
From the tracker file, get all original WorkflowRun LSIDs.
getOriginalServiceList() - Method in class org.ecoinformatics.seek.ecogrid.EcogridPreferencesTab
Method to get original service list(this list is for cancel button)
getOriginModule() - Method in class org.kepler.configuration.ConfigurationProperty
 
getOutgoingPort() - Method in class ptolemy.domains.modal.kernel.State
Return the outgoing port.
getOutgoingPort() - Method in interface ptolemy.kernel.util.Flowable
Return the outgoing port.
getOutput() - Method in class org.kepler.ddp.actor.pattern.stub.StubSinkActor
Get the data read from the workflow by this actor.
getOutput() - Method in class org.sdm.spa.gui.UserInteractiveShell
Get the output string to be sent.
getOutput() - Method in class org.sdm.spa.TextualInteractionShell
Get the output string to be sent.
getOutput() - Method in class ptolemy.actor.lib.gui.InteractiveShell
Get the output string to be sent.
getOutput(long[]) - Method in class ptolemy.matlab.Engine
Get last matlab stdout.
getOutputActionsReferredInputPorts(Transition) - Method in class ptolemy.domains.modal.kernel.NonStrictFSMDirector
Given a transition, get a set of input ports referred in the outputActions of that transition.
getOutputCommitter(TaskAttemptContext) - Method in class org.kepler.hadoop.io.output.TokenOutputFormat
Get the output commiter.
getOutputController() - Method in class ptolemy.actor.process.CompositeProcessDirector
Return the output branch controller of this director.
getOutputMethods() - Method in class org.sdm.spa.SoaplabServiceClient
To get a list of all the OutputMethods (get_) methods in the given WSDL of the client.Outputmethods were set via caliing the generateOutputMethods().
getOutputNames() - Method in class org.kepler.ddp.actor.ExecutionChoice
Get a list of file output names.
getOutputNames(boolean) - Method in class org.kepler.ddp.actor.ExecutionChoice
Get a list of output port names.
getOutputPorts() - Method in class org.sdm.spa.util.ActorInspector
 
getOutputRoleToken(int) - Method in class org.kepler.provenance.DefaultQuery
 
getOutputRoleToken(int) - Method in class org.kepler.provenance.prov.ProvQuery
Get the output role (port name) of a token.
getOutputRoleToken(int) - Method in interface org.kepler.provenance.Queryable
Get the output role (port name) of a token.
getOutputRoleToken(int) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the output role (port name) of a token.
getOutputStatement(String) - Method in class org.kepler.scriptengine.java.JavaScriptEngineFactory
 
getOutsideFlag() - Method in class ptolemy.actor.IOPortEvent
Return the flag indicating that the event related to the port's outside activity (true) or to its inside activity.
getOutsideFlag() - Method in class ptolemy.actor.TokenGotEvent
Deprecated.
Return the direction flag (outside or inside).
getOverflow() - Method in class ptolemy.math.Quantization
Return the overflow strategy.
getOverwriteFile(Module, File) - Static method in class org.kepler.configuration.ConfigurationManager
returns the file from the .kepler directory if it exists, returns f if it doesn't.
getOwner() - Method in class ptolemy.gui.QueryChooser
Returns the owning query object.
getPactKeyTypeForFieldInKeyValuePort(TypedIOPort, String) - Static method in class org.kepler.stratosphere.type.TypeUtilities
Get the PACT Key data type for a specific field in port with the key-value type.
getPactKeyTypeForPtolemyType(Type) - Static method in class org.kepler.stratosphere.type.TypeUtilities
Get the PACT Key type for a Ptolemy type.
getPactValueTypeForFieldInKeyValuePort(TypedIOPort, String) - Static method in class org.kepler.stratosphere.type.TypeUtilities
Get the PACT Value data type for a specific field in port with the key-value type.
getPactValueTypeForPtolemyType(Type) - Static method in class org.kepler.stratosphere.type.TypeUtilities
Get the PACT Value type for a Ptolemy type.
getPage() - Method in class ptolemy.actor.gui.HTMLViewer
Get the page displayed by this viewer.
getPaintedObject() - Method in class ptolemy.vergil.toolbox.GraphicElement
Return a new painted object that looks like this graphic element.
getPairsMap(ConfigurationProperty) - Static method in class org.kepler.configuration.ConfigurationUtilities
Return a map from a list of name value pairs contained in a property.
getPairsMap(ConfigurationProperty, boolean) - Static method in class org.kepler.configuration.ConfigurationUtilities
Return a map of name value pairs contained in a property.
getPanel() - Method in class com.jgoodies.forms.builder.PanelBuilder
Returns the panel used to build the form.
getPanel() - Method in class org.kepler.plotting.Plot
 
getParagraphPad() - Method in class com.jgoodies.forms.util.LayoutStyle
Returns a pad used to separate paragraphs.
getParaImplNames(String) - Method in class org.kepler.ddp.actor.pattern.AtomicPatternActor
Get a set of (kepler name, implementation name) pairs of input/output format parameters for the execution engine.
getParaImplNames(String) - Method in interface org.kepler.ddp.actor.pattern.DDPPatternActor
Get a set of (kepler name, implementation name) pairs of input/output format parameters for the execution engine.
getParaImplNames(String) - Method in class org.kepler.ddp.actor.pattern.SingleInputPatternActor
Get a set of (kepler name, implementation name) pairs of input/output format parameters for the execution engine.
getParameter(String) - Method in class org.kepler.scriptengine.java.JavaScriptEngineFactory
 
getParameter() - Method in class ptolemy.actor.parameters.ParameterPort
Get the associated parameter.
getParameterAndPortParameterNameValuesForFiring(int) - Method in class org.kepler.provenance.DefaultQuery
 
getParameterAndPortParameterNameValuesForFiring(int) - Method in interface org.kepler.provenance.Queryable
Get an actor's parameter and port parameter name value pairs for a firing id.
getParameterAndPortParameterNameValuesForFiring(int) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get an actor's parameter and port parameter name value pairs for a firing id.
getParameterDoc(String) - Method in class ptolemy.vergil.basic.DocAttribute
Return the documentation for the given parameter, or null if there none.
getParameterInfo() - Method in class ptolemy.actor.gui.MoMLApplet
Describe the applet parameters.
getParameterInfo() - Method in class ptolemy.actor.gui.PtolemyApplet
Describe the applet parameters.
getParameterInfo() - Method in class ptolemy.gui.BasicJApplet
Describe the applet parameters.
getParameterInfo() - Method in class ptolemy.plot.compat.PxgraphApplet
Return information about parameters.
getParameterInfo() - Method in class ptolemy.plot.PlotApplet
Return information about parameters.
getParameterInfo() - Method in class ptolemy.vergil.MoMLViewerApplet
Describe the applet parameters.
getParameterInfo() - Method in class ptolemy.vergil.VergilApplet
Describe the applet parameters.
getParameterNames() - Method in class org.kepler.ddp.actor.ExecutionChoice
Get a list of parameter names.
getParameterNameValuesForExecution(int) - Method in class org.kepler.provenance.DefaultQuery
 
getParameterNameValuesForExecution(int) - Method in interface org.kepler.provenance.Queryable
Get the parameter name value pairs for an execution.
getParameterNameValuesForExecution(int) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the parameter name value pairs for an execution.
getParameterNameValuesForFiring(int) - Method in class org.kepler.provenance.DefaultQuery
 
getParameterNameValuesForFiring(int) - Method in interface org.kepler.provenance.Queryable
Get an actor's parameter name value pairs for a firing id.
getParameterNameValuesForFiring(int) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get an actor's parameter name value pairs for a firing id.
getParameterNameValuesOfSpecificTypeForExecution(int) - Method in class org.kepler.provenance.DefaultQuery
 
getParameterNameValuesOfSpecificTypeForExecution(int) - Method in interface org.kepler.provenance.Queryable
Get the parameter name value pairs for an execution, whose parameter type is either '.Parameter' or '.StringParameter'
getParameterNameValuesOfSpecificTypeForExecution(int) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the parameter name value pairs for an execution, whose parameter type is either '.Parameter' or '.StringParameter'
getParameters() - Method in class org.kepler.ddp.actor.pattern.AtomicPatternActor
Get a set of name-value pairs of input/output format parameters for the execution engine.
getParameters() - Method in interface org.kepler.ddp.actor.pattern.DDPPatternActor
Get a set of name-value pairs of input/output format parameters for the execution engine.
getParameters() - Method in class org.kepler.ddp.actor.pattern.SingleInputPatternActor
Get a set of name-value pairs of input/output format parameters for the execution engine.
getParameters() - Method in class org.kepler.spark.operator.Operator
Get the configuration parameters.
getParameterTable(NamedObj) - Static method in class ptolemy.vergil.basic.export.web.ParameterDisplayIconScript
Get an HTML table describing the parameters of the object.
getParameterType(String) - Method in class org.kepler.ddp.actor.ExecutionChoice
Get the parameter type for a parameter.
getParameterType(NamedObj, String) - Static method in class org.kepler.ddp.actor.ExecutionChoice
Get the parameter type for a parameter in a container within this actor.
getParameterValueAtTime(Date, String, KeplerLSID) - Method in class org.kepler.provenance.DefaultQuery
 
getParameterValueAtTime(Date, String, KeplerLSID) - Method in interface org.kepler.provenance.Queryable
Get the value of a parameter at a specific time.
getParameterValueAtTime(Date, String, KeplerLSID) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the value of a parameter at a specific time.
getParameterValueLatest(String, KeplerLSID) - Method in class org.kepler.provenance.DefaultQuery
 
getParameterValueLatest(String, KeplerLSID) - Method in interface org.kepler.provenance.Queryable
Get the latest value of a parameter.
getParameterValueLatest(String, KeplerLSID) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the latest value of a parameter.
getParamValue() - Method in class ptolemy.data.expr.test.AttributeChanged
Return the cached value of the parameter.
getParent() - Method in interface org.ecoinformatics.seek.querybuilder.DBWhereIFace
Return its parent object
getParent() - Method in class org.ecoinformatics.seek.querybuilder.DBWhereListCellBase
Returns the parent
getParent() - Method in class org.kepler.configuration.ConfigurationProperty
returns the parent propert of this property.
getParent(Figure) - Method in class org.kepler.gui.KeplerContextMenuFactory
 
getParent() - Method in class org.kepler.kar.karxml.KarXml.KarEntry
 
getParent() - Method in class org.kepler.objectmanager.data.db.AttributeList
get parent entity
getParent() - Method in class org.kepler.objectmanager.library.LibItem
 
getParent() - Method in class ptolemy.actor.process.BranchController
Return the composite actor that contains this branch controller.
getParent() - Method in class ptolemy.graph.sched.ScheduleElement
Return the parent schedule element of this schedule element.
getParent() - Method in class ptolemy.kernel.InstantiableNamedObj
Return the parent of this object, or null if there is none.
getParent() - Method in interface ptolemy.kernel.util.Instantiable
Return the parent of this object, or null if there is none.
getParent() - Method in class ptolemy.kernel.util.test.TestInstantiableAttribute
 
getParent() - Method in class ptolemy.kernel.util.test.TestInstantiableNamedObj
 
getParent(Object) - Method in class ptolemy.vergil.actor.ActorGraphModel.ExternalPortModel
Return the graph parent of the given node.
getParent(Object) - Method in class ptolemy.vergil.actor.ActorGraphModel.IconModel
Return the graph parent of the given node.
getParent(Object) - Method in class ptolemy.vergil.actor.ActorGraphModel.PortModel
Return the graph parent of the given node.
getParent(Object) - Method in class ptolemy.vergil.actor.ActorGraphModel.VertexModel
Return the graph parent of the given node.
getParent() - Method in class ptolemy.vergil.basic.export.web.WebElement
Return the name of the desired parent element, or the empty string if none.
getParent(Object) - Method in class ptolemy.vergil.kernel.AttributeNodeModel
Return the graph parent of the given node.
getParent(Object) - Method in class ptolemy.vergil.modal.FSMGraphModel.PortModel
Return the graph parent of the given node.
getParent(Object) - Method in class ptolemy.vergil.modal.FSMGraphModel.StateModel
Return the graph parent of the given node.
getParentComponent() - Method in class org.kepler.gui.AnnotatedPTree
 
getParentDialog(Container) - Static method in class ptolemy.gui.QueryChooserHelper
Determine the dialog of this frame.
getParentForInsert() - Method in class org.ecoinformatics.seek.querybuilder.DBWherePanel
Return the appropriate DBWhereIFace object that the new item will be parented to
getParentFrame() - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.DatasetPanel
Implementation of TabPane getParentFrame()
getParentFrame() - Method in class org.kepler.gui.BasicLibraryPane
Implementation of TabPane getParentFrame()
getParentFrame() - Method in class org.kepler.gui.ClassicViewPane
 
getParentFrame() - Method in class org.kepler.gui.ComponentLibraryTab
Implementation of getParentFrame getName()
getParentFrame() - Method in class org.kepler.gui.DefaultViewPane
 
getParentFrame() - Method in class org.kepler.gui.DualVerticalViewPane
 
getParentFrame() - Method in class org.kepler.gui.PlotsEditorPanel
Get the container frame.
getParentFrame() - Method in class org.kepler.gui.PlotsPanel
Get the container frame.
getParentFrame() - Method in class org.kepler.gui.popups.LibraryPopup
 
getParentFrame() - Method in class org.kepler.gui.popups.NoLiidLibraryPopup
 
getParentFrame() - Method in class org.kepler.gui.SingleViewPane
 
getParentFrame() - Method in interface org.kepler.gui.TabPane
This method must return the TableauFrame this tab is associated with.
getParentFrame() - Method in class org.kepler.gui.TabPaneExtensionExample
 
getParentFrame() - Method in interface org.kepler.gui.ViewPane
This method must return the TableauFrame this view is associated with.
getParentFrame() - Method in class org.kepler.gui.WorkflowOutlineTabPane
 
getParentFrame() - Method in class org.kepler.objectmanager.cache.browser.CacheViewerTabPane
 
getParentFrame() - Method in class org.kepler.profiling.gui.ViewWatchingTabPane
Get the parent frame.
getParentFrame() - Method in class org.kepler.reporting.gui.ItemsOfInterestPanel
Implementation of getParentFrame getName()
getParentFrame() - Method in class org.kepler.reporting.gui.PropertiesPanel
Implementation of getParentFrame getName()
getParentFrame() - Method in class org.kepler.reporting.gui.ReportDesignerPanel
Implementation of getParentFrame getName()
getParentFrame() - Method in class org.kepler.reporting.gui.ReportViewerPanel
Implementation of getParentFrame getName()
getParentFrame() - Method in class org.kepler.reporting.gui.ReportViewerTOC
Implementation of getParentFrame getName()
getParentFrame() - Method in class org.kepler.workflowrunmanager.gui.WorkflowRunManagerPanel
 
getParentFrame() - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerPanel
This method must return the TableauFrame this tab is associated with.
getParentFrame() - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerParentPanel
Return the parent frame
getParentFrame() - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerServerInstallationInfoPanel
Return the parent frame
getParentFrame(Container) - Static method in class ptolemy.gui.QueryChooserHelper
Determine the parent of this frame.
getParentId() - Method in class org.kepler.moml.NamedObjId
 
getParentTableauFrame(Component) - Static method in class org.kepler.gui.GUIUtil
Get the parent TableauFrame, if any, for a Component.
getParentWindow(Component) - Static method in class org.kepler.gui.GUIUtil
The getParentWindow method will return the Window that contains the supplied Component.
getParser() - Method in class ptolemy.moml.ParserAttribute
Get the parser.
getParser(NamedObj) - Static method in class ptolemy.moml.ParserAttribute
Get a parser for the specified object.
getParser() - Static method in class ptolemy.moml.unit.UnitLibrary
Return the Parser.
getParserScope() - Method in class ptolemy.data.expr.Variable
Return the parser scope for this variable.
getParseTree(String) - Method in class ptolemy.domains.modal.kernel.AbstractActionsAttribute
Return the parse tree referred to by the given name.
getParseTreeEvaluator() - Method in class ptolemy.domains.continuous.kernel.HybridModalDirector
Return the parse tree evaluator used to evaluate guard expressions.
getParseTreeEvaluator() - Method in class ptolemy.domains.modal.kernel.FSMDirector
Return the parse tree evaluator used to evaluate guard expressions.
getParseTreeEvaluator() - Method in class ptolemy.domains.modal.kernel.Transition
Return the parse tree evaluator used by this transition to evaluate the guard expression.
getParseTreeList() - Method in class ptolemy.domains.modal.kernel.AbstractActionsAttribute
Return the list of parse trees given in expression set for this attribute.
getPartialSelectedServicesList() - Method in class org.ecoinformatics.seek.ecogrid.ServicesDisplayPanel
Method to return a partial selection serivce list.
getPartialUnselectedServiceList() - Method in class org.ecoinformatics.seek.ecogrid.ServicesDisplayPanel
This method will return a partial selected service list.
getPassphrase() - Method in class org.geon.Scp.MyUserInfo
 
getPassphrase() - Method in class org.sdm.spa.Ssh2Exec.MyUserInfo
 
getPassword() - Method in class org.geon.Scp.MyUserInfo
 
getPassword() - Method in class org.kepler.authentication.Domain
 
getPassword() - Static method in class org.kepler.authentication.gui.GAMALoginGUI
get the password from the gui
getPassword() - Method in class org.kepler.authentication.gui.LDAPLoginGUI
return the password
getPassword(InputStream, String) - Static method in class org.kepler.ssh.MaskedTextPasswordField
 
getPassword() - Method in class org.sdm.spa.Ssh2Exec.MyUserInfo
 
getPassword() - Method in class ptolemy.actor.gui.PasswordAttribute
Get the password contained by this attribute.
getPath() - Method in class org.kepler.gui.TreeAction
return the path where the folder was added
getPath() - Method in class org.kepler.kar.KARCached
 
getPath() - Method in class org.kepler.kar.KARCacheError
 
getPath() - Method in class org.kepler.kar.KARFile
Return the path where this kar file is found on disk.
getPath(LibItem) - Method in class org.kepler.objectmanager.library.LibIndex
Returns a Vector of LibItems that are the parents of the given LibItem.
getPathAsURI() - Method in class org.kepler.ddp.actor.pattern.AtomicPathActor
Get the path as a URI string.
getPattern() - Method in class org.kepler.objectmanager.data.text.TextDomain
 
getPatternLog() - Method in class ptolemy.util.StreamExec
Return the value of the pattern log.
getPeriod() - Method in class ptolemy.math.Interpolation
Return the value repetition period.
getPhysicalLineDelimiter() - Method in class org.kepler.objectmanager.data.db.Entity
 
getPicture() - Method in interface ptolemy.actor.lib.image.ImageDisplayInterface
Get the platform dependent picture that contains the image.
getPicture() - Method in class ptolemy.actor.lib.image.ImageDisplayJavaSE
Get the platform dependent picture that contains the image.
getPixelSize(Component) - Method in class com.jgoodies.forms.layout.ConstantSize
Converts the size if necessary and returns the value in pixels.
getPlagOpxCpxDiagraminSVG() - Static method in class org.geon.TernaryDiagram
 
getPlagPxHblDiagraminSVG() - Static method in class org.geon.TernaryDiagram
 
getPlagPxOlDiagraminSVG() - Static method in class org.geon.TernaryDiagram
 
getPlatform() - Static method in class org.kepler.gui.StaticGUIResources
Get the platform on which this application is running.
getPlatformContainer() - Method in class ptolemy.actor.gui.AWTContainer
Return the AWT container that this instance wraps.
getPlatformContainer() - Method in interface ptolemy.actor.injection.PortableContainer
Return the platform dependent container that this instance wraps.
getPlatformContainer() - Method in interface ptolemy.actor.lib.gui.PlotterBaseInterface
Get the platform dependent container that contains the plotter.
getPlatformContainer() - Method in class ptolemy.actor.lib.gui.PlotterBaseJavaSE
Get the platform dependent container that contains the plotter.
getPlatformContainer() - Method in interface ptolemy.actor.lib.image.ImageDisplayInterface
Get the platform dependent container that contains the image.
getPlatformContainer() - Method in class ptolemy.actor.lib.image.ImageDisplayJavaSE
Get the platform dependent container that contains the image.
getPlot() - Method in class org.kepler.plotting.PlotEditor
 
getPlot() - Method in class ptolemy.actor.gui.PlotEffigy
Return the plot that this is an effigy of.
getPlotEditor() - Method in class org.kepler.plotting.DataTable
 
getPlotEditor() - Method in class org.kepler.plotting.GraphLabelsPanel
 
getPlotEditor() - Method in class org.kepler.plotting.Plot
 
getPlotEditor() - Method in class org.kepler.plotting.Row
 
getPlotEditor() - Method in class org.kepler.plotting.TableButtonPanel
 
getPlotRectangle() - Method in class ptolemy.plot.PlotBox
Get the current plot rectangle.
getPlotRectangle() - Method in interface ptolemy.plot.PlotBoxInterface
Get the current plot rectangle.
getPlottingController() - Method in class org.kepler.plotting.DataTable
 
getPlottingController(TableauFrame) - Method in interface org.kepler.plotting.PlottingControllerFactory
 
getPlottingControllerFactory() - Static method in class org.kepler.gui.PlotsEditorPanel
 
getPlottingControllerFactory() - Method in class org.kepler.plotting.DataTable
 
getPnt() - Method in class org.ecoinformatics.seek.querybuilder.DBQueryDefTable
Returns the location as a point
GetPoint - Class in org.geon
This is a domain specific actor used within the GEON mineral classifier for calculating a calssification point given mineral composition and coordinate names.
GetPoint(CompositeEntity, String) - Constructor for class org.geon.GetPoint
Construct an actor with the given container and name.
getPoint() - Method in class org.geon.PolygonUtil
 
getPoint(double, double, double, double, double, double, double) - Static method in class org.geon.TernaryDiagram
 
getPoint(double) - Method in class ptolemy.vergil.actor.PortConnectSite
Get the position of this site.
getPointer() - Method in class org.kepler.sms.KeplerRefinementIOPort
 
getPointForGabbroOlivine(int, int, int, int, int) - Method in class org.geon.RockSample
 
getPointType() - Method in class org.kepler.plotting.Row
 
getPolygon() - Method in class org.geon.PolygonUtil
 
getPolygons() - Method in class org.ecoinformatics.seek.querybuilder.DBTableJoinItem
Returns the array of X coord locations
getPopulatedLibItem(int) - Method in class org.kepler.objectmanager.library.LibraryManager
Populate this LibItem Object from the database using the given Library Index ID.
getPopup(JTree, MouseEvent, TreePath, Component) - Method in class org.kepler.objectmanager.repository.RepositoryPopup
 
getPort(String) - Method in interface org.kepler.ddp.actor.pattern.DDPPatternActor
Get the port with the given name.
getPort() - Method in class org.kepler.monitor.MonitorAttribute
 
getPort() - Method in class org.kepler.provenance.IOPortRefillEvent
Return the port where the event occurred.
getPort() - Method in class org.kepler.sms.KeplerIOPortReference
Return the corresponding IOPort for the reference.
getPort() - Method in class org.kepler.sms.KeplerVirtualIOPortReference
 
getPort() - Method in class org.sdm.spa.actors.transport.vo.ConnectionDetails
 
getPort() - Method in class ptolemy.actor.IOPortEvent
Return the port where the event occurred.
getPort() - Method in class ptolemy.actor.parameters.PortParameter
Return the associated port.
getPort() - Method in class ptolemy.actor.TokenGotEvent
Deprecated.
Return the port that the token was received at.
getPort() - Method in class ptolemy.actor.TokenSentEvent
Deprecated.
Return the port that the token was sent from.
getPort() - Method in exception ptolemy.actor.TypedIOPort.RunTimeTypeCheckException
Return the port where the exception occurred.
getPort(String) - Method in class ptolemy.kernel.CompositeEntity
Get a contained port by name.
getPort(String) - Method in class ptolemy.kernel.Entity
Return the port contained by this entity that has the specified name.
getPort() - Method in class ptolemy.vergil.actor.PortTerminal
Return the port specified in the constructor.
getPort(String) - Method in class ptolemy.vergil.basic.KeplerDocumentationAttribute
Return the port documentation.
getPortBundles(NamedObj) - Static method in class org.kepler.sms.SMSServices
Get all the port bundles define for a given named object.
getPortDoc(String) - Method in class ptolemy.vergil.actor.DocManager
Return the documentation for the specified port, or null if there is none.
getPortDoc(String) - Method in class ptolemy.vergil.basic.DocAttribute
Return the documentation for the given port, or null if there none.
getPortHash() - Method in class ptolemy.vergil.basic.KeplerDocumentationAttribute
Return the port hash.
getPortIOType(Port) - Static method in class org.kepler.ddp.actor.ExecutionChoice
Get the IOType for a port.
getPortLastAccess() - Method in class org.kepler.provenance.FireState
Get the last port access for the actor.
getPortModel() - Method in class ptolemy.vergil.actor.ActorGraphModel
Get the port model.
getPortModel() - Method in class ptolemy.vergil.modal.FSMGraphModel
Get the port model.
getPorts() - Method in class ptolemy.kernel.Entity
Deprecated.
Use portList() instead.
getPortScope() - Method in class ptolemy.domains.modal.kernel.FSMActor
Return a scope object that has current values from input ports of this FSMActor in scope.
getPortSemanticTypes(Object) - Static method in class org.kepler.sms.SMSServices
Given a port object (TODO: convert to IOPortWrapper), returns the semantic types assigned to the port.
getPortsForActor(KeplerLSID, String) - Method in class org.kepler.provenance.DefaultQuery
 
getPortsForActor(KeplerLSID, String) - Method in interface org.kepler.provenance.Queryable
Get the ports for an actor.
getPortsForActor(KeplerLSID, String) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the ports for an actor.
getPosition() - Method in class org.kepler.reporting.rio.ItemLabel
 
getPrecision() - Method in class org.kepler.objectmanager.data.NumericDomain
 
getPrecision() - Method in class ptolemy.data.DateToken
Get the precision of this date.
getPrecision() - Method in class ptolemy.data.type.FixType
Return the precision associated with this FixType.
getPrecision() - Method in class ptolemy.math.FixPoint
Return a precision to represent this number.
getPrecision() - Method in class ptolemy.math.FixPointQuantization
Return the precision.
getPrecision() - Method in class ptolemy.math.Quantization
Return the Precision.
getPreemptiveTransitionsReferredInputPorts(State) - Method in class ptolemy.domains.modal.kernel.NonStrictFSMDirector
Given a state, get a set of input ports referred in the guards of the preemptive transitions leaving that state.
getPreference() - Method in class ptolemy.data.expr.CachedMethod.ArgumentConversion
Return the preference of this conversion, relative to other conversions.
getPreferencesFrame() - Method in class org.kepler.gui.PreferencesFrameTracker
 
getPreferredDim() - Method in class org.ecoinformatics.seek.querybuilder.DBTableField
Gets the preferred dimension
getPreferredSize() - Method in class org.ecoinformatics.seek.querybuilder.DBTableDesktopPane
Returns the preferred size of the desktop pane so it is large enough for all the tables (meaning we want to be able to scroll and see all the tables and not have them clipped)
getPreferredSize() - Method in class org.kepler.reporting.rio.gui.ImageComponent
 
getPreferredSize(JComponent) - Method in class org.kepler.workflowrunmanager.gui.GroupableTableHeaderUI
Invokes the getPreferredSize method on each UI handled by this object.
getPreferredSize() - Method in class ptolemy.media.Picture
Return the preferred size.
getPreferredSize() - Method in class ptolemy.plot.PlotBox
Get the preferred size of this component.
getPrefs() - Static method in class org.mlc.swing.layout.UserPrefs
Access the singleton instance.
getPreinitializeVersion() - Method in class ptolemy.actor.Manager
Return the workspace version on the last completion of preinitializeAndResolveTypes().
getPreloadModels() - Static method in class org.kepler.webview.server.WebViewConfiguration
Returns any models to be preloaded.
getPrepStatement(String) - Method in class org.kepler.util.sql.DatabaseType
Get a PreparedStatement from an SQL string.
getPreviewRunLSID(String) - Method in class org.kepler.util.RemoteStoreRunsTracker
From the tracker file, get the LSID of the preview WorkflowRun (the WorkflowRun that was downloaded, modified, and imported into the local reflection store).
getPreviousDifference() - Method in class ptolemy.domains.modal.kernel.RelationNode
Return the difference information from the previous evaluation of the relation node.
getPreviousMaximumDistance() - Method in class ptolemy.domains.modal.kernel.RelationList
Return the previous difference of the relation that has the maximum current difference.
getPrevPanel() - Method in class org.kepler.reporting.gui.ReportDesignerPanel
 
getPrevSelectedItem() - Method in class org.kepler.reporting.gui.ReportDesignerPanel
 
getPrevSelectedPanel(List<DragAndDropPanel>) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
getPrevSelectedPanel - figures out which panel was previously selected, so that we can de-select it, and change the colors, etc.
getPrimaryFileExtension() - Method in class org.kepler.util.sql.DatabaseType
Get the primary file extension of the database.
getPrimaryFileExtension() - Method in class org.kepler.util.sql.HSQL
Get the primary file extension of the database.
getPrimaryKey() - Method in class org.ecoinformatics.seek.querybuilder.DBTableFrame
Returns a the Primary Key Definition for the table
getPrimaryKey() - Method in class org.kepler.objectmanager.data.db.DSTableDef
Returns a DSTableKeyDef Object representing the Primary Key
getPrimaryKey() - Method in interface org.kepler.objectmanager.data.db.DSTableIFace
Returns a the Primary Key Definition for the table
getPrimaryKey() - Method in class org.kepler.objectmanager.data.db.Entity
Returns a the Primary Key Definition for the table
getPrimaryLabel() - Method in class ptolemy.moml.unit.Unit
Get the primary label of a Unit.
getPrintExeInfo() - Method in class org.kepler.ddp.actor.pattern.AtomicPatternActor
Get whether print execution summary when running workflow inside of Hadoop/Stratosphere job.
getPrintExeInfo() - Method in interface org.kepler.ddp.actor.pattern.DDPPatternActor
Get whether print execution summary when running workflow inside of Hadoop/Stratosphere job.
getPrintExeInfo() - Method in class org.kepler.ddp.actor.pattern.SingleInputPatternActor
Get whether print execution summary when running workflow inside of Hadoop/Stratosphere job.
getPrivacy() - Method in class org.kepler.cloudsharing.util.WorkflowResults
Get the Privacy for these results.
getProcessings() - Method in class org.geon.LidarJobConfig
 
getProcessResponse(String) - Method in class org.geon.ExecutionThread
 
getProcessTime() - Method in class org.geon.LidarJobConfig
 
getProducerReceiver() - Method in class ptolemy.actor.process.Branch
Return the producer receiver that this branch gets data from.
getProfile() - Method in class ptolemy.domains.pn.kernel.event.test.StringPNListener
Return a string containing a description of all the activities recorded by the listener and reset the description.
getProfile() - Method in class ptolemy.domains.pn.kernel.test.TestDirector
Return a profile which contains the various actions performed by this object.
getProgram(String...) - Method in class org.kepler.scriptengine.java.JavaScriptEngineFactory
 
getProgress() - Method in class org.kepler.bio.hadoop.input.FASTARecordReader
Get the progress within the split
getProgress() - Method in class org.kepler.hadoop.io.input.DelimitedTextRecordReader
Get the progress within the split
getProgress() - Method in class org.kepler.hadoop.io.input.DuplicatedTextRecordReader
 
getProgress() - Method in class org.kepler.hadoop.io.input.FileContentRecordReader
 
getProgress() - Method in class org.kepler.hadoop.io.input.FilePathRecordReader
 
getProgress() - Method in class org.kepler.hadoop.io.input.MultiLineRecordReader
Get the progress within the split
getProgress() - Method in class org.kepler.hadoop.io.input.TokenRecordReader
Get the progress.
GetProjection - Class in org.kepler.gis.actor.proj
Get the projection for a file.
GetProjection(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.proj.GetProjection
 
getProperties() - Method in class org.kepler.configuration.ConfigurationManager
return all properties handled by the manager
getProperties(Module) - Method in class org.kepler.configuration.ConfigurationManager
get a list of properties that belong to a module
getProperties(Module, ConfigurationNamespace) - Method in class org.kepler.configuration.ConfigurationManager
get a list of properties that belong to a certain module within a specific namespace
getProperties(Module, ConfigurationNamespace, String) - Method in class org.kepler.configuration.ConfigurationManager
get a list of properties that belong to a certain module with a specific name within a namespace
getProperties(Module, String) - Method in class org.kepler.configuration.ConfigurationManager
get a list of properties that belong to a certain module with a specific name.
getProperties() - Method in class org.kepler.configuration.ConfigurationProperty
return a list of nested properties within this property
getProperties(String) - Method in class org.kepler.configuration.ConfigurationProperty
return a list of nested properties that have a specific name.
getProperties(String, boolean) - Method in class org.kepler.configuration.ConfigurationProperty
do a recursive get through this ConfigurationProperty
getProperties(ConfigurationProperty, String, boolean) - Static method in class org.kepler.configuration.ConfigurationProperty
get properties from a configurationProperty with a given name.
getProperties() - Method in class org.kepler.reporting.rio.ItemProperties
Retrieve a list of all the property keys for this ItemProperties object
getProperties() - Method in class org.mlc.swing.layout.ButtonBarComponentBuilder
 
getProperties() - Method in interface org.mlc.swing.layout.ComponentBuilder
Returns a list of properties that are appropriate for construction
getProperties() - Method in class org.mlc.swing.layout.DefaultComponentBuilder
 
getProperties() - Method in class org.mlc.swing.layout.JListComponentBuilder
 
getProperties() - Method in class org.mlc.swing.layout.JTableComponentBuilder
 
getProperties() - Method in class org.mlc.swing.layout.JToolBarComponentBuilder
 
getProperties() - Method in class org.mlc.swing.layout.JTreeComponentBuilder
 
getProperties() - Method in class org.mlc.swing.layout.SeparatorComponentBuilder
 
getPropertiesWithPath(ConfigurationProperty, String[], boolean) - Static method in class org.kepler.configuration.ConfigurationProperty
recursively return all properties with a path denoted in s.
getProperty(String) - Method in class com.microstar.xml.driver.SAXDriver
 
getProperty() - Method in class org.kepler.configuration.ConfigurationEvent
get the property that caused this event
getProperty(Module) - Method in class org.kepler.configuration.ConfigurationManager
Returns the root property of the default configuration for a module.
getProperty(Module, ConfigurationNamespace) - Method in class org.kepler.configuration.ConfigurationManager
return the root ConfigurationProperty of the namespace.
getProperty(Module, String) - Method in class org.kepler.configuration.ConfigurationManager
get a property from the module's default namespace configuration with a given name
getProperty(Module, ConfigurationNamespace, String) - Method in class org.kepler.configuration.ConfigurationManager
return a single property from a module with a specific name in a specific namespace.
getProperty(String) - Method in class org.kepler.configuration.ConfigurationProperty
if there are more than one property with the same name, just return the first one.
getProperty(String, int) - Method in class org.kepler.configuration.ConfigurationProperty
return a property with a given name at the specified index.
getProperty(int) - Method in class org.kepler.configuration.ConfigurationProperty
get the property with the given index in the current list of properties
getProperty(String) - Method in class org.kepler.gui.LibrarySearcher
returns a user set property
getProperty(String) - Method in class org.kepler.monitor.MonitoredStatus
Gets the current value of a monitored property.
getProperty(String) - Method in class org.kepler.reporting.rio.fop.tools.AbstractObjectReader
 
getProperty(String) - Method in class org.kepler.reporting.rio.ItemProperties
 
getProperty(String) - Static method in class ptolemy.data.expr.UtilityFunctions
Deprecated.
getProperty(String) - Static method in class ptolemy.util.StringUtilities
Get the specified property from the environment.
getProperty(Object, String) - Method in class ptolemy.vergil.basic.AbstractBasicGraphModel
Return the property of the object associated with the given property name.
getProperty(String) - Method in class ptolemy.vergil.basic.KeplerDocumentationAttribute
Return the property documentation.
getPropertyDoc(String) - Method in class ptolemy.vergil.actor.DocManager
Return the documentation for the specified property (parameter or attribute), or null if there is none.
getPropertyHash() - Method in class ptolemy.vergil.basic.KeplerDocumentationAttribute
Return the property hash.
getPropertyId() - Method in class org.kepler.sms.SemanticProperty
return the value of the semantic property (the id)
getPropertyNameAt(int) - Method in class org.kepler.reporting.rio.ItemProperties
 
getPropertyNames() - Method in class org.kepler.monitor.MonitoredStatus
Gets the names of the properties of this monitored object.
getPropertyTimer() - Method in class org.kepler.monitor.MonitoredStatus
Gets the property timer.
getProposedRating() - Method in class ptolemy.vergil.actor.DocManager
Return the Pt.ProposedRating field, or null if none has been given.
getProtocolPathDest() - Method in class org.sdm.spa.actors.transport.FileCopierBase
 
getProtocolPathSrc() - Method in class org.sdm.spa.actors.transport.FileCopierBase
 
getPrototypeList() - Method in class ptolemy.kernel.InstantiableNamedObj
Return a list of prototypes for this object.
getPrototypeList() - Method in interface ptolemy.kernel.util.Derivable
Return a list of prototypes for this object.
getPrototypeList() - Method in class ptolemy.kernel.util.NamedObj
Return a list of prototypes for this object.
getProvenanceConfigurationProperty() - Method in class org.kepler.util.ProvenanceStore
 
getProvenanceRecorder(KeplerLSID) - Static method in class org.kepler.reporting.rio.util.ProvenanceUtil
 
getProvenanceRecorder() - Method in class org.kepler.workflowrunmanager.WorkflowRunManager
 
getProvenanceStore() - Method in class org.kepler.workflowrunmanager.WorkflowRunManager
 
getProvenanceStores() - Method in class org.kepler.workflowrunmanager.WRMDefaults
 
getProxy(String) - Method in class org.kepler.authentication.AuthenticationManager
This function retrieves back the user proxy within specified domain, adding ProxyEntity to AuthenticationManager's proxyRepository in the process.
getPTIIMenuActionsMap() - Method in class org.kepler.gui.MenuMapper
 
getPtolemyModel() - Method in class ptolemy.vergil.basic.AbstractBasicGraphModel
Return the Ptolemy II model associated with this graph model.
getPtolemyPreferencesWithinConfiguration(Configuration) - Static method in class ptolemy.actor.gui.PtolemyPreferences
Get the PtolemyPreferences within the specified configuration.
getPublicId() - Method in class com.microstar.xml.driver.SAXDriver
 
getPublishedPort(String) - Method in class ptolemy.actor.CompositeActor
Get the published port with named name.
getPublishedPortChannel(IOPort) - Method in class ptolemy.actor.CompositeActor
Get the channel name of a published port.
getPublishedPorts(Pattern) - Method in class ptolemy.actor.CompositeActor
Get the published ports with names that match a regular expression.
getPutPath() - Method in class org.kepler.objectmanager.repository.Repository
return the put service path
GetPylaskiMeasurements - Class in org.kepler.gis.actor.pylaski
Query Pylaski REST service for weather data.
GetPylaskiMeasurements(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.pylaski.GetPylaskiMeasurements
 
getQAPFDiagraminSVG() - Static method in class org.geon.TernaryDiagram
 
getqEnd() - Method in class org.kepler.bio.util.BlastTabularResult
 
getQName(int) - Method in class com.microstar.xml.driver.SAXDriver
 
getqStart() - Method in class org.kepler.bio.util.BlastTabularResult
 
getQualifiers() - Method in class org.ptolemy.commons.ThreeDigitVersionSpecification
Return the optional array of version qualifiers.
getQuery() - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.SearchQueryGenerator
Method to get query which generate by this class
getQueryable(boolean) - Method in class org.kepler.provenance.Recording
Get a Queryable connected to the Recording output.
getQueryable() - Method in class org.kepler.provenance.RecordPlayer
Get the queryable.
getQueryable(boolean) - Method in class org.kepler.provenance.sql.SQLRecordingV8
Get a Queryable connected to the Recording output.
getQueryable(KeplerLSID, TableauFrame) - Static method in class org.kepler.reporting.rio.util.ProvenanceUtil
 
getQueryable() - Method in class org.kepler.workflowrunmanager.WorkflowRunManager
 
getQueryId() - Method in class org.kepler.bio.util.BlastTabularResult
 
getQueryPath() - Method in class org.kepler.objectmanager.repository.Repository
return the query service path
getQueryResponse(String) - Method in class org.geon.ExecutionThread
 
getQueryServicesList() - Method in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
Finds a list of query services this is a convenience method for the more general form that takes a full list of types
getQueryTime() - Method in class org.geon.LidarJobConfig
 
getQueryValue() - Method in class ptolemy.actor.gui.PtolemyQuery.ActionableEntry
Return the contents of the entry box.
getQueryValue() - Method in interface ptolemy.gui.SettableQueryChooser
Return a string representation of the query.
getQuickSearchEcoGridQuery(String) - Method in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreMetaDataSpecification
Method to create a quick query search
getQuickSearchEcoGridQuery(String) - Method in class org.ecoinformatics.seek.datasource.eml.eml2.EML2MetadataSpecification
Method to create a quick query search
getQuickSearchEcoGridQuery(String) - Method in class org.ecoinformatics.seek.ecogrid.MetadataSpecificationInterface
This method will return a quick search query base on the given value
getQuickSearchEcoGridQuery(String) - Method in class org.kepler.dataproxy.metadata.ADN.ADNMetadataSpecification
Method to create a quick query search
getQuoteCharater() - Method in class org.kepler.objectmanager.data.text.TextDelimitedDataFormat
 
getRange() - Method in class org.kepler.sms.KeplerIOPortSemanticLink
 
getRange(boolean) - Method in class org.kepler.sms.NamedOntProperty
FIXME: Need to support non class ranges
getRankingTableauFrame() - Static method in class org.kepler.workflow.WorkflowManager
 
getRate(IOPort) - Static method in class ptolemy.actor.util.DFUtilities
Return the number of tokens that will be produced or consumed on the given port.
getRateVariable(Port, String) - Static method in class ptolemy.actor.util.DFUtilities
Get the Variable with the specified name in the given port, or with the specified name preceded by an underscore.
getRateVariables() - Method in class ptolemy.actor.lib.string.test.SDFTestScheduler
Return the _rateVariables from the parent class.
getRateVariableValue(Port, String, int) - Static method in class ptolemy.actor.util.DFUtilities
Get the integer value stored in the Variable with the specified name.
getRBNBClientName() - Method in class org.kepler.data.datasource.dataturbine.DataTurbine
Get the name of this DataTurbine client.
getReadAccess() - Method in class ptolemy.kernel.util.Workspace
Obtain permission to read objects in the workspace.
getReader(File, CoordinateReferenceSystem) - Static method in class org.kepler.gis.util.RasterUtilities
Get a reader for a raster file.
getRealStartTime() - Method in class ptolemy.actor.Manager
Get the real time at which the model began executing.
getReceiverPort() - Method in class ptolemy.actor.IOPortEvent
Return the receiver's port if this event represents a token put directly into a receiver instead of transferred via IOPort send or sendInside.
getReceivers() - Method in class ptolemy.actor.IOPort
If the port is an input, return the receivers that receive data from all linked relations.
getReceivers(IORelation) - Method in class ptolemy.actor.IOPort
If the port is an input, return receivers that handle incoming channels from the specified relation.
getReceivers(IORelation, int) - Method in class ptolemy.actor.IOPort
If the port is an input, return receivers that handle incoming channels from the specified relation.
getRecord(int) - Method in class ptolemy.actor.lib.Recorder
Deprecated.
This method is deprecated. Use getHistory().
getRecord() - Static method in class ptolemy.actor.test.TestActor
Get the record.
getRecord() - Static method in class ptolemy.actor.test.TypedTestActor
Get the record.
getRecordCount(String) - Method in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200Parser
returns the number of records in this dataItem
getRecordDelimiter() - Method in class org.kepler.objectmanager.data.db.Entity
get the recordDelimiter used with this entity
getRecordDetailList() - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.ResultRecord
Get the recordDetailsList in this entity
getRecordId() - Method in class org.ecoinformatics.seek.datasource.EcogridMetaDataCacheItem
 
getRecordId() - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.ResultRecord
Get the identifier of this record.
getRecordId() - Method in class org.kepler.dataproxy.datasource.geon.GEONDatabaseResource
Get the identifier of this record.
getRecordId() - Method in class org.kepler.dataproxy.datasource.geon.GEONShpResource
Get the identifier of this record.
getRecording() - Method in class org.kepler.provenance.ProvenanceRecorder
Get the current recording.
getRecordingParameters() - Method in class org.kepler.provenance.ProvenanceRecorder
Get current RecordingParameters.
getRecordWriter(TaskAttemptContext) - Method in class org.kepler.hadoop.io.output.TokenOutputFormat
Get the record writer.
getRecordWriter(TaskAttemptContext) - Method in class org.kepler.hadoop.io.output.ValueOnlyOutputFormat
 
getRecursiveCopyCmd(String, String, boolean) - Method in class org.kepler.ssh.SftpExec
Returns the list of sftp commands (combination of "mkdir" and "put" commands) that are required to recursively copy a directory.
getRefColumn() - Method in class org.kepler.util.sql.Table.ForeignKey
Get the referenced column name.
getReference() - Method in class org.kepler.gui.state.StateChangeEvent
 
getReference() - Method in class ptolemy.domains.sdf.optimize.lib.DummyReferenceToken
Gets the reference.
getReferencedKeys() - Method in class org.kepler.objectmanager.data.db.JoinConditionConstraint
Method to get referenced key in parent table
getReferenceId() - Method in class org.kepler.objectmanager.data.db.AttributeList
 
getReferralList() - Method in class org.kepler.util.WorkflowRun
 
getReferrals() - Method in class org.kepler.moml.NamedObjIdReferralList
This method returns a list of KeplerLSID objects.
getReferredInputPorts(Set, Set) - Method in class ptolemy.domains.modal.kernel.NonStrictFSMDirector
Given a set of ports, get those that are input ports of the container and put them in the indicated referred set.
getRefinedPort() - Method in class org.kepler.sms.KeplerRefinementIOPort
 
getRefinedState() - Method in interface ptolemy.domains.modal.kernel.RefinementActor
Return the state (or event, which subclasses state) that this actor refines.
getRefinedState() - Method in class ptolemy.domains.modal.modal.ModalController
Get the state in any ModalController within this ModalModel that has this ModalController as its refinement, if any.
getRefinedState() - Method in class ptolemy.domains.modal.modal.ModalRefinement
Get the state in any ModalRefinement within this ModalModel that has this ModalRefinement as its refinement, if any.
getRefinedState() - Method in class ptolemy.domains.modal.modal.Refinement
Get the state in any ModalController within this ModalModel that has this refinement as its refinement, if any.
getRefinement() - Method in class ptolemy.domains.modal.kernel.State
Return the refinements of this state.
getRefinement() - Method in class ptolemy.domains.modal.kernel.Transition
Return the refinements of this transition.
getRefinementClass(NamedObj) - Method in class ptolemy.domains.modal.modal.RefinementSuggestion
Return the class name of the suggested refinement that can be used to contain the given dropObject.
getRefinementClasses() - Method in class ptolemy.vergil.modal.modal.HierarchicalStateController
Return a map with the keys as the names of the refinement types, and the values as the names of the classes that implement those refinement types.
getRefinementPorts(NamedObj) - Static method in class org.kepler.sms.SMSServices
Get all the existing refinement ports defiend for a given named object.
getRefinementReferredInputPorts(State) - Method in class ptolemy.domains.modal.kernel.NonStrictFSMDirector
Given a state, get a set of input ports referred by the refinements of that state.
getRefresh() - Method in class org.ecoinformatics.seek.datasource.EcogridCompressedDataCacheItem
Method to get refresh variable
getRefTable() - Method in class org.kepler.util.sql.Table.ForeignKey
Get the referenced table name.
getRegion() - Method in class org.geon.PolygonUtil
 
getRegisteredClasses() - Static method in class ptolemy.data.expr.PtParser
Return the list of classes the parser searches when a function call is encountered.
getRegistry() - Method in class org.kepler.objectmanager.repository.Repository
get the registry of the repository
getRelatedComponentsPadX() - Method in class com.jgoodies.forms.util.LayoutStyle
Returns a horizontal gap used to separate related controls.
getRelatedComponentsPadY() - Method in class com.jgoodies.forms.util.LayoutStyle
Returns a vertical gap used to separate related controls.
getRelation(String) - Method in class ptolemy.actor.LazyTypedCompositeActor
Get a contained relation by name.
getRelation(String) - Method in class ptolemy.kernel.CompositeEntity
Get a contained relation by name.
getRelation() - Method in class ptolemy.vergil.kernel.Link
Return the relation that this link represents.
getRelationIndex(IOPort, Relation, boolean) - Static method in class ptolemy.actor.IOPort
Retrieve the index of the relation at the port.
getRelationList() - Method in class ptolemy.domains.modal.kernel.ParseTreeEvaluatorForGuardExpression
Return the list of relations (boolean-valued expressions that do not contain a logical operator, such as comparison expressions) in the guard expression of this transition.
getRelations() - Method in class ptolemy.kernel.CompositeEntity
Deprecated.
Use relationList() instead.
getRelativeLocation() - Method in class ptolemy.vergil.basic.RelativeLocation
Get the relative location, relative to the relativeTo object, if there is one, and otherwise return the absolute location.
getRelativeToNamedObj() - Method in class ptolemy.vergil.basic.RelativeLocation
If the relativeTo object exists, return it.
getReleaseLocation() - Static method in class org.kepler.modulemanager.RepositoryLocations
 
getRemoteDocumentationURLBase() - Static method in class ptolemy.vergil.actor.DocManager
Get the location of the website documentation.
getRemoteFiles() - Method in class org.kepler.job.Job
Return vector of remote files that should be copied into to remote job directory before submission.
getRemoteKarLSID() - Method in class org.kepler.workflowscheduler.gui.LocalRemoteWorkflowMap
 
getRemoteReceivers() - Method in class ptolemy.actor.IOPort
If the port is an output, return the remote receivers that can receive from the port.
getRemoteReceivers(IORelation) - Method in class ptolemy.actor.IOPort
If this port is an output, return the remote receivers that can receive data from this port through the specified relation or any relation in its relation group.
getRemoteStoreRunsTracker() - Method in class org.kepler.util.ProvenanceStore
 
getRemoved() - Method in class org.kepler.tagging.util.SetChange
 
getRepoName() - Method in class org.kepler.kar.KARCached
 
getRepoName() - Method in class org.kepler.kar.KARCacheError
 
getReport() - Method in class org.kepler.reporting.rio.fop.ReportInputSource
Returns the report.
getReportInstance() - Method in class org.kepler.gui.state.ReportingStateChangeEvent
 
getReportItemPanels() - Method in class org.kepler.reporting.gui.ReportDesignerPanel
get ReportItemPanels() gets the ReportItemPanels in general, the panels are laid out directly from the report model, but this is used for the GUI to re-arrange the panels and access report items that are associated with them.
getReportItems() - Method in class org.kepler.reporting.roml.ItemsOfInterest
 
getReportItemsAsList() - Method in class org.kepler.reporting.roml.ItemsOfInterest
 
getReportLayout(TableauFrame) - Method in class org.kepler.workflow.Workflow
 
getReportLayouts() - Method in class org.kepler.workflow.Workflow
 
getRepositories() - Method in class org.kepler.objectmanager.repository.RepositoryManager
return the list of repositories
getRepository() - Method in class org.kepler.kar.UploadToRepository
 
getRepository() - Method in class org.kepler.objectmanager.repository.Repository
get the repository url
getRepository(String) - Method in class org.kepler.objectmanager.repository.RepositoryManager
returns the repository with the given name. if it doesn't exist, this method returns null.
getRepositoryForFile(File) - Method in class org.kepler.objectmanager.cache.LocalRepositoryManager
Get the repository for a file.
getRepositoryName() - Method in class org.kepler.kar.karxml.KarXml
 
getRepositoryName() - Method in class org.kepler.workflowscheduler.gui.LocalRemoteWorkflowMap
 
getRes() - Method in class org.geon.LidarJobConfig
 
getResizeWeight() - Method in class com.jgoodies.forms.layout.FormSpec
Returns the current resize weight.
getResolution() - Method in class ptolemy.vergil.toolbox.SnapConstraint
Return the resolution for this instance.
getResource(String) - Static method in class ptolemy.util.ClassUtilities
Get the resource.
getResourceAsFile(Object, String) - Static method in class org.kepler.util.FileUtil
Get a File object from a resource on the classpath using the ClassLoader that loaded the given object.
getResourceDir(String) - Static method in class org.kepler.kar.KARFile
Return the local resource dir associated with given namespace, null if can't be found.
getResourceFileName(String) - Static method in class org.kepler.kar.KARFile
Return the local resource filename associated with given namespace, null if can't be found.
getResourceName() - Method in class org.kepler.objectmanager.cache.DataCacheObject
 
getResourceSaveJarURLAsTempFile(String) - Static method in class ptolemy.actor.gui.JNLPUtilities
Get the resource, if it is in a jar URL, then copy the resource to a temporary file first.
getResult() - Method in class ptolemy.domains.de.lib.test.Iterations
 
getResultRoot() - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.DatasetPanel
Gets the resultRoot attribute of the DatasetPanel object
getResults() - Method in class ptolemy.actor.gui.test.TestModel
Return the history of the recorder.
getResultSet() - Method in class org.ecoinformatics.seek.dataquery.DataQueryAction
Method to get resultset after excute query
getResultSet() - Method in class org.ecoinformatics.seek.dataquery.HsqlDataQueryAction
Method to get result set
getResultset() - Method in class org.ecoinformatics.seek.datasource.EcogridQueryDataCacheItem
Returns the data cached as a resultset object
getResultTree() - Method in class org.kepler.gui.ComponentLibraryTab
Get the result tree after searching.
getResultTree() - Method in class org.kepler.gui.ResultTreeRebuilder
Get the result tree
getReturnType() - Method in class ptolemy.data.expr.CachedMethod.ArrayMapCachedMethod
Override the base class to return an array type with the element type being the return type of the underlying scalar method.
getReturnType() - Method in class ptolemy.data.expr.CachedMethod
Return the type of the token that results from an invocation of this method.
getReturnType() - Method in class ptolemy.data.expr.CachedMethod.MatrixMapCachedMethod
 
getReturnType() - Method in class ptolemy.data.type.FunctionType
Return the type of the specified label.
getReuseDatasets() - Method in class ptolemy.plot.Plot
Return false if setReuseDatasets() has not yet been called or if setReuseDatasets(false) has been called.
getReuseDatasets() - Method in interface ptolemy.plot.PlotInterface
Return false if setReuseDatasets() has not yet been called or if setReuseDatasets(false) has been called.
getRevision() - Method in class org.kepler.objectmanager.lsid.KeplerLSID
return the revision componenent of this lsid
getRhs() - Method in class ptolemy.moml.unit.UnitConstraint
Get the right hand side.
getRight() - Method in class org.kepler.objectmanager.library.LibItem
 
getROHubAuthToken() - Static method in class org.kepler.webview.server.WebViewConfiguration
Returns the auth token for ROHUB.
getROHubURI() - Static method in class org.kepler.webview.server.WebViewConfiguration
Returns the URI for ROHUB REST API.
getRoot() - Method in class org.kepler.gui.FilteredVisibleTreeModel
 
getRoot() - Method in class org.sdm.spa.gui.XMLUIP.DomToTreeModelAdapter
 
getRoot() - Method in class ptolemy.actor.parameters.SharedParameter
Return the top level of the containment hierarchy, unless one of the containers is an instance of EntityLibrary, in which case, return null.
getRoot() - Method in class ptolemy.vergil.tree.EntityTreeModel
Get the root of this tree model.
getRootClasses(boolean) - Method in class org.kepler.sms.NamedOntModel
 
getRootName() - Method in class org.kepler.moml.KeplerActorMetadata
 
getRootName() - Method in class org.kepler.objectmanager.cache.ActorCacheObject
Gets the rootName attribute of the ActorCacheObject object.
getRootProperty() - Method in class org.kepler.configuration.RootConfigurationProperty
return the root property of this configuration
getRounding() - Method in class ptolemy.math.Quantization
Return the rounding strategy.
getRow() - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Returns the cursor's row.
getRow(int) - Method in class org.kepler.plotting.DataTable
 
getRowCount() - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Returns the number of rows in the form.
getRowCount() - Method in class com.jgoodies.forms.layout.FormLayout
Returns the number of rows in this layout.
getRowCount() - Method in class org.ecoinformatics.seek.ecogrid.ServicesDisplayTableModel
Get the number of row
getRowCount() - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelBase
Returns the number of rows
getRowCount() - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableOverviewModel
Returns the number of rows
getRowCount() - Method in class org.kepler.gui.ComponentLibraryPreferencesTab.ComponentSourceTableModel
 
getRowCount(Token) - Static method in class org.kepler.reporting.rio.util.TokenUtil
 
getRowCount() - Method in class org.kepler.workflowrunmanager.gui.WorkflowRunManagerTableModel
 
getRowCount() - Method in class org.kepler.workflowscheduler.gui.configurationwizard.KnownWorkflowRunEngineTableModel
Get the number of row
getRowCount() - Method in class org.kepler.workflowscheduler.gui.ScheduleTableModel
Get the number of row
getRowCount() - Method in class org.mlc.swing.layout.ContainerLayout
 
getRowCount() - Method in class ptolemy.actor.gui.ArrayOfRecordsPane.ArrayAsTable
Get the row count of the Matrix.
getRowCount() - Method in class ptolemy.data.BooleanMatrixToken
Return the number of rows in the matrix.
getRowCount() - Method in class ptolemy.data.ComplexMatrixToken
Return the number of rows in the matrix.
getRowCount() - Method in class ptolemy.data.DoubleMatrixToken
Return the number of rows in the matrix.
getRowCount() - Method in class ptolemy.data.expr.ASTPtMatrixConstructNode
 
getRowCount() - Method in class ptolemy.data.expr.ConcreteMatrixToken
Return the number of rows of the contained matrix.
getRowCount() - Method in class ptolemy.data.FixMatrixToken
Return the number of rows in the matrix.
getRowCount() - Method in class ptolemy.data.IntMatrixToken
Return the number of rows in the matrix.
getRowCount() - Method in class ptolemy.data.LongMatrixToken
Return the number of rows in the matrix.
getRowCount() - Method in class ptolemy.data.MatrixToken
Return the number of rows of the matrix.
getRowDataVectorFromStream() - Method in class org.kepler.objectmanager.data.text.TextComplexFormatDataReader
This method will read one row from inputstream and return a data vector which element is String and the value is field data.
getRowDataVectorFromStream() - Method in class org.kepler.util.DelimitedReader
This method is from data source as a input stream This method will read one row from and return a data vector which element is String and the value is field data.
getRowEditorModel() - Method in class org.kepler.reporting.gui.PropertiesTable
 
getRowGroups() - Method in class com.jgoodies.forms.layout.FormLayout
Returns a deep copy of the row groups.
getRowHeightFactor() - Method in class org.ecoinformatics.seek.ecogrid.ServicesDisplayTableModel
Method to get row height factor
getRowSpec(int) - Method in class com.jgoodies.forms.layout.FormLayout
Returns the RowSpec at the specified row index.
getRowSpec(int) - Method in class org.mlc.swing.layout.ContainerLayout
 
getRowSpecs() - Method in class org.mlc.swing.layout.ContainerLayout
 
getRowSpecsString() - Method in class org.mlc.swing.layout.ContainerLayout
 
getRun(String) - Method in class org.kepler.workflowrunmanager.WorkflowRunManager
 
getRun(KeplerLSID) - Method in class org.kepler.workflowrunmanager.WorkflowRunManager
 
getRunWithGUI() - Static method in class org.kepler.Kepler
Returns true if -nogui was specified on the command line.
getRunWorkflowLifecyclePerInput() - Method in class org.kepler.ddp.actor.pattern.SingleInputPatternActor
Check if the full lifecycle of the sub-workflow should be executed for each input.
getSampleRate() - Static method in class ptolemy.media.javasound.LiveSound
Return the current sampling rate in Hz, which is set by the setSampleRate() method.
getSampleRate() - Method in class ptolemy.media.javasound.LiveSoundCommon
Return the current sampling rate in Hz, which is set by the setSampleRate() method.
getSampleRate() - Method in interface ptolemy.media.javasound.LiveSoundInterface
Return the current sampling rate in Hz, which is set by the setSampleRate() method.
getSampleRate() - Method in class ptolemy.media.javasound.SoundCapture
Return the sampling rate in Hz.
getSampleRate() - Method in class ptolemy.media.javasound.SoundReader
Return the sampling rate in Hz.
getSamples(Object) - Static method in class ptolemy.media.javasound.LiveSound
Return an array of captured audio samples.
getSamples(Object) - Method in interface ptolemy.media.javasound.LiveSoundInterface
Return an array of captured audio samples.
getSamples(Object) - Method in class ptolemy.media.javasound.LiveSoundJavaSE
Return an array of captured audio samples.
getSamples() - Method in class ptolemy.media.javasound.SoundCapture
Return an array of captured audio samples.
getSamples() - Method in class ptolemy.media.javasound.SoundReader
Return an array of captured audio samples.
getSamplesInt() - Method in class ptolemy.media.javasound.SoundCapture
Return an array of captured audio samples.
getSampleSizeInBits() - Method in class ptolemy.media.javasound.SoundCapture
Return the number of bits per audio sample.
getSavedFilenames() - Method in class org.kepler.provenance.sql.SQLQueryV8
Get a list of files saved in the database.
getSaveInitiatorList() - Method in class org.kepler.kar.KARBuilder
 
getSaveInitiatorList() - Method in class org.kepler.kar.SaveKAR
 
getSaveKAR() - Method in class org.kepler.gui.kar.ExportArchiveAction
 
getSaveRepository() - Method in class org.kepler.objectmanager.cache.LocalRepositoryManager
 
getSaveRepository() - Method in class org.kepler.objectmanager.repository.RepositoryManager
return the repository that is currently marked as the save repository
getScalarMatrices - Variable in class ptolemy.matlab.Engine.ConversionParameters
If true (default), 1x1 matrices are returned as appropriate ScalarToken.
getScale() - Method in class ptolemy.moml.unit.Unit
Get the scale.
getSchedule() - Method in class ptolemy.actor.sched.Scheduler
Return the scheduling sequence as an instance of the Schedule class.
getScheduler() - Method in class ptolemy.actor.sched.StaticSchedulingDirector
Return the scheduler that is responsible for scheduling the directed actors.
getSchedulerURL() - Static method in class org.kepler.module.workflowschedulergui.Initialize
Get the url of the scheduler.
getSchedules() - Method in class org.kepler.workflowscheduler.gui.QueryingSchedulerServerResultParser
Get the schedules list in vector format
getSchema() - Method in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreSchema
 
getSchema() - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelBase
Returns the Schema object
getSchema() - Method in class org.ecoinformatics.seek.querybuilder.DBTableDesktopPane
Returns the Schema Object
getSchema() - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneAdvanced
Return Schema
getSchema() - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneIntermediate
Return Schema
getSchema() - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
Return Schema
getScope() - Method in class ptolemy.data.expr.Variable
Return a NamedList of the variables that the value of this variable can depend on.
getScope(NamedObj) - Static method in class ptolemy.data.expr.Variable
Return a NamedList of the variables that the value of the specified variable can depend on.
getScopedAttribute(Attribute, NamedObj, String) - Static method in class ptolemy.data.expr.ModelScope
Get the attribute with the given name in the scope of the given container.
getScopedObject(NamedObj, String) - Static method in class ptolemy.data.expr.ModelScope
Get the NamedObj with the given name in the scope of the given container.
getScopedVariable(Variable, NamedObj, String) - Static method in class ptolemy.data.expr.ModelScope
Get the variable with the given name in the scope of the given container.
getScreenResolution(Component) - Method in class com.jgoodies.forms.util.AbstractUnitConverter
Returns the components screen resolution or the default screen resolution if the component is null or has no toolkit assigned yet.
getScriptEngine() - Method in class org.kepler.scriptengine.java.JavaScriptEngineFactory
 
getScriptEngineFactoryName(String) - Static method in class org.kepler.ddp.Utilities
Get the script engine factory name for a language.
getScriptEngineName(String) - Static method in class org.kepler.ddp.Utilities
Get the script engine name for a language.
getScrollableTracksViewportHeight() - Method in class org.kepler.plotting.DataTable
 
getScrollBarModifier() - Method in class org.kepler.gui.ScrollBarModifier
returns true if the scrollbars should be enabled
getScrollPane() - Method in class org.ecoinformatics.seek.querybuilder.DBTableFrame
Returns the ScrollPane for the List
getScrollPane() - Method in class ptolemy.actor.gui.TextEditor
Return the scroll pane, if there is one, and null if not.
getScrollValue() - Method in class org.ecoinformatics.seek.querybuilder.DBTableFrame
Returns the current value of the vertical scrollbar for the JList
getSearchAction() - Method in class org.kepler.gui.SearchUIJPanel
Returns the javax.swing.Action object that is called when the Search button is pressed.
getSearchData() - Method in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreDataSource
Get the searchData of this record.
getSearcher() - Method in class org.kepler.objectmanager.library.LibIndex
 
getSearchScope() - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.DatasetPanel
Method to get EcoGridServicesController
getSearchTerm() - Method in class org.kepler.gui.LibrarySearchPane
return the search string
getSearchTerm() - Method in class org.kepler.gui.SearchUIJPanel
 
getSearchTerm() - Method in class org.kepler.gui.SimpleSearchUIPane
 
getSearchTextFieldValue() - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.DatasetPanel
Get the search text field value
getSearchTypes() - Method in class org.kepler.objectmanager.library.LibSearchConfiguration
 
getSearchValue() - Method in class org.ecoinformatics.seek.ecogrid.RegistrySearchDialog
Get the value from input text field
getSecond() - Method in class ptolemy.data.DateToken
Get the second part of this date.
getSecondaryKeys() - Method in class org.kepler.objectmanager.data.db.DSTableDef
Returns a Vector of DSTableFieldDef Objects where each object is a secondary Key
getSections() - Method in class org.kepler.reporting.roml.ReportLayout
 
getSeeAlso() - Method in class ptolemy.vergil.actor.DocManager
Return "see also" information.
getSelectableDocumentTypeList() - Method in class org.ecoinformatics.seek.ecogrid.SelectableEcoGridService
Method to get selectable DocumentType list(both selected and unselected)
getSelectableObjectLabel() - Method in class org.ecoinformatics.seek.ecogrid.SelectableDocumentType
This method come from SelecteObjectInterface.
getSelectableObjectLabel() - Method in interface org.ecoinformatics.seek.ecogrid.SelectableObjectInterface
Method to get selectable object label(for example name)
getSelectableObjectLabel() - Method in class org.ecoinformatics.seek.ecogrid.SelectableServiceName
Method from SelectedObject interface.
getSelectableServiceName() - Method in class org.ecoinformatics.seek.ecogrid.SelectableEcoGridService
Method to get selected service name
getSelectedColor() - Method in class ptolemy.gui.Query.QueryColorChooser
Get the selected color name.
getSelectedDocumentTypeList() - Method in class org.ecoinformatics.seek.ecogrid.SelectableEcoGridService
Method to get selectable DocumentType list(only selected)
getSelectedFile() - Method in class ptolemy.gui.PtFileChooser
Return the selected file as an absolute File (a File that is not relative).
getSelectedFileName() - Method in class ptolemy.gui.Query.QueryFileChooser
Get the selected file name.
getSelectedItem() - Method in class org.kepler.reporting.gui.ReportDesignerPanel
getSelectedItem and setSelectedItem are currently used to create the properties table that appears in the 'Items of Interest' panel.
getSelectedModel() - Method in class org.kepler.gui.frame.TabbedKeplerGraphFrame
Return the model associated with the selected tab.
getSelectedOverTableViewModel() - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
Method to get selected table view's model
getSelectedPanel(List<DragAndDropPanel>) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
getSelectedPanel - figures out which panel is currently selected, so that we can see if it is the same as the previously selected one, and if it isn't the same -- then change the colors, etc.
getSelectedRunsForSave() - Method in class org.kepler.workflowrunmanager.WorkflowRunManager
 
getSelectedServicesList() - Method in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
Method to get selected service with selected document types from service list vector.
getSelectedServicesList() - Method in class org.ecoinformatics.seek.ecogrid.ServicesDisplayTableModel
Method to get selected service list
getSelectedTableView() - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
Method to get selected table view
getSelectionPath() - Method in class org.kepler.gui.popups.LibraryPopup
 
getSelectionPath() - Method in class org.kepler.gui.popups.NoLiidLibraryPopup
 
getSelectionSet() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Return a set of instances of NamedObj representing the objects that are currently selected.
getSelectionString(PylaskiUtilities.Selection) - Static method in class org.kepler.gis.actor.pylaski.PylaskiUtilities
Maps the selection enums (see above) to their string counterparts.
getSelectionType() - Method in class org.kepler.gis.actor.pylaski.PylaskiUtilities.Settings
The selection type (inferred from the location settings).
getSelects() - Method in class org.ecoinformatics.seek.querybuilder.DBQueryDef
The vector of items representing the the items to be disdplayed
The items are object of class DBSelectTableModelItem
getSemanticObject(Object) - Method in class ptolemy.vergil.actor.ActorGraphModel
Return the semantic object corresponding to the given node, edge, or composite.
getSemanticObject(Object) - Method in class ptolemy.vergil.basic.AbstractBasicGraphModel
Return the semantic object corresponding to the given node, edge, or composite.
getSemanticObject(Object) - Method in class ptolemy.vergil.modal.FSMGraphModel
Return the semantic object corresponding to the given node, edge, or composite.
getSemanticProperties() - Method in class org.kepler.sms.KeplerIOPortSemanticLink
 
getSemanticType() - Method in class org.kepler.sms.RemovableSemanticType
 
getSemanticTypeHash() - Method in class org.kepler.objectmanager.ActorMetadata
 
getSemanticTypes() - Method in class org.kepler.kar.KARCacheContent
 
getSemanticTypes() - Method in class org.kepler.kar.karxml.KarXml.KarEntry
 
getSemanticTypes() - Method in class org.kepler.moml.KeplerActorMetadata
 
getSemanticTypes() - Method in class org.kepler.objectmanager.ActorMetadata
return a vector of the ids of the semantic type reference
getSemanticTypes() - Method in class org.kepler.objectmanager.cache.CacheContent
 
getSemanticTypes() - Method in class org.kepler.objectmanager.cache.CacheObject
this returns the semantic types vector
getSemanticTypes() - Method in class org.kepler.objectmanager.repository.EcogridRepositoryResults
return any semantic types associated with this component
getSemanticTypes(NamedObj) - Method in class org.kepler.sms.gui.SemanticTypeTable
 
getSemanticTypesFor(KeplerLSID) - Method in class org.kepler.objectmanager.cache.CacheManager
Return a list of Semantic Types for the given LSID.
getsEnd() - Method in class org.kepler.bio.util.BlastTabularResult
 
getSensorName() - Method in class org.kepler.plotting.Row
 
getSequence(int) - Method in class org.sdm.spa.actors.piw.viz.SequenceCollection
 
getServer() - Method in class org.kepler.data.datasource.dataturbine.DataTurbine
Get the server name and port string.
getServerTypes() - Method in class org.kepler.ddp.director.DDPEngine
Valid types of servers that can be started.
getService(String) - Method in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
Used for tying together related services Finds the EcoGridService for a given endpoint
getService(String, String) - Method in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
Finds the EcoGridService for a given serviceGroup/serviceType pairing
getServiceBinding() - Method in class org.sdm.spa.MessageBasedWebService
Deprecated.
Configure the service, port and binding info.
getServiceBinding() - Method in class org.sdm.spa.WebServiceStub
Deprecated.
Configure the service, port and binding info.
getServiceClass() - Method in class org.kepler.authentication.Domain
 
getServiceClassification() - Method in class org.ecoinformatics.seek.ecogrid.EcoGridService
Get service classification
getServiceDomain(EcoGridService) - Method in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
 
getServiceGroup() - Method in class org.ecoinformatics.seek.ecogrid.EcoGridService
 
getServiceGroupList(String) - Method in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
Finds a list of services for a given serviceGroup name
getServiceName() - Method in class org.ecoinformatics.seek.ecogrid.EcoGridService
Get service name
getServiceName() - Method in class org.ecoinformatics.seek.ecogrid.SelectableServiceName
Method to getServiceName
getServiceOperation() - Method in class org.kepler.authentication.Domain
 
getServicesDisplayPanel() - Method in class org.ecoinformatics.seek.ecogrid.EcogridPreferencesTab
Method to get service display panel
getServicesList() - Method in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
Method to get the full service list vector
getServicesList(String) - Method in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
Finds a list of services for a given serviceType name this is a convenience method for the more general form that takes a full list of types
getServicesList(Vector) - Method in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
Finds a list of services with serviceTypes in the given type list
getServiceType() - Method in class org.ecoinformatics.seek.ecogrid.EcoGridService
Get service type of this service
getServiceURL() - Method in class org.kepler.authentication.Domain
 
getSessionId() - Method in class org.kepler.kar.UploadToRepository
 
getSetActionsReferredInputPorts(Transition) - Method in class ptolemy.domains.modal.kernel.NonStrictFSMDirector
Given a transition, get a set of input ports referred in the set actions of that transition.
getSettingsMap() - Method in class org.kepler.provenance.ProvenanceRecorder
Return a Map of the settings, returns default settings if necessary
getSettingsString(String, String) - Static method in class org.kepler.util.StaticResources
Search the uiSettings resourcebundle for the property specified by the key parameter.
getShape() - Method in enum org.kepler.plotting.PointType
 
getShape() - Method in class ptolemy.vergil.kernel.RelativeLinkFigure
Get the outline shape of this figure.
getShareWith() - Method in class org.kepler.cloudsharing.util.WorkflowResults
Get who these results are shared with.
getShortName() - Method in class org.kepler.reporting.rio.DynamicReportItem
 
getShortName() - Method in class org.kepler.reporting.rio.Item
 
getShortStateDesc() - Method in class ptolemy.moml.unit.Solution
Get the state of the solution.
getSign() - Method in class ptolemy.math.Precision
Return the sign (0 = unsigned, 1 = signed).
getSimpleAuthGroup(String, String) - Static method in class org.kepler.webview.server.WebViewConfiguration
Get the authorization group.
getSince() - Method in class ptolemy.vergil.actor.DocManager
Return the since field, or null if none has been given.
getSingleUnit() - Method in class ptolemy.moml.unit.UnitExpr
If this UnitExpr has one term and it is a Unit then return that Unit.
getSite(int) - Method in class org.sdm.spa.actors.piw.viz.SiteCollection
 
getSite(String) - Method in class org.sdm.spa.actors.piw.viz.SiteCollection
 
getSize() - Method in class com.jgoodies.forms.layout.FormSpec
Returns the size.
getSize() - Method in class org.ecoinformatics.seek.querybuilder.DBTableListModel
Get the number of fields
getSize() - Method in class org.ecoinformatics.seek.querybuilder.DBWhereModel
Returns the size of the model
getSize() - Method in class org.kepler.io.FileInfo
 
getSize() - Method in class org.kepler.kar.karxml.KarXml
 
getSize() - Method in class org.kepler.reporting.rio.ReportSection
 
getSize(String, int) - Static method in class org.kepler.util.StaticResources
Search the uiSettings resourcebundle for the size property specified by the sizeKey.
getSize(JTable) - Method in class org.kepler.workflowrunmanager.gui.ColumnGroup
Get the dimension of this ColumnGroup.
getSize() - Method in class ptolemy.vergil.unit.UnitSolverDialog.SolutionListModel
Return the number of solutions.
getSmooth() - Method in class org.geon.LidarJobConfig
 
getSortedAutoCompletions() - Method in class org.kepler.tagging.gui.AutoCompleteComboBox
 
getSoundParameter() - Method in class ptolemy.media.javasound.LiveSoundEvent
Return the parameter of LiveSound that has changed.
getSource() - Method in class org.kepler.objectmanager.data.text.TextDomain
 
getSource() - Method in class org.kepler.provenance.IOPortRefillEvent
Return the source of the event.
getSource() - Method in class org.kepler.provenance.ProvenanceEvent
Return the source of the event.
getSource() - Method in class org.kepler.sms.gui.SemanticTypeBrowserSelectionEvent
 
getSource() - Method in class org.kepler.tagging.TagEvent
 
getSource() - Method in class ptolemy.actor.FiringEvent
Return the source of the event.
getSource() - Method in class ptolemy.actor.IOPortEvent
Return the port that caused this event.
getSource() - Method in class ptolemy.actor.lib.gui.HistogramPlotter
Return the input source that was specified the last time the configure method was called.
getSource() - Method in class ptolemy.actor.TypeEvent
Return the Typeable whose type is changed.
getSource() - Method in class ptolemy.domains.modal.kernel.StateEvent
Return the source of the event, which is an instance of FSMActor.
getSource() - Method in class ptolemy.kernel.util.ChangeRequest
Get the source that was specified in the constructor.
getSource() - Method in interface ptolemy.kernel.util.DebugEvent
Return the source of the event.
getSource() - Method in interface ptolemy.kernel.util.MoMLExportable
Get the source, which gives an external URL associated with an entity (presumably from which the entity was defined).
getSource() - Method in class ptolemy.kernel.util.NamedObj
Get the source, which gives an external URL associated with an entity (presumably from which the entity was defined).
getSource() - Method in class ptolemy.kernel.util.test.TestDebugEvent
Return the director that activated this event.
getSource() - Method in class ptolemy.moml.unit.UnitConstraint
Get the source of this equation.
getSourceAction() - Method in class org.kepler.gui.SearchUIJPanel
Returns the javax.swing.Action object that is called when the Source button is pressed.
getSourceActor() - Method in class org.kepler.sms.actors.SimpleMergeMapping
 
getSourceActor() - Method in class org.kepler.sms.actors.SimpleMergeSourceActor
 
getSourceActorPort() - Method in class org.kepler.sms.actors.SimpleMergeMapping
 
getSourceActorPort() - Method in class org.kepler.sms.actors.SimpleMergeSourceActorPort
 
getSourceForReport(ReportLayout) - Static method in class org.kepler.reporting.rio.fop.ReportInputSource
Returns a Source object for a Report object so it can be used as input for a JAXP transformation.
getSourceType() - Method in class org.kepler.reporting.rio.DynamicReportItem
 
getSourceType() - Method in class ptolemy.vergil.toolbox.FigureAction
Return the source type of this action, which is one of CANVAS_TYPE, CONTEXTMENU_TYPE, TOOLBAR_TYPE, MENUBAR_TYPE, HOTKEY_TYPE, or null if none was recognized.
getSpaces(int) - Static method in class org.ecoinformatics.seek.querybuilder.DBUIUtils
Returns the desired number of spaces for the depth (usually *2)
getSplits(JobContext) - Method in class org.kepler.bio.hadoop.input.FASTAInputFormat
 
getSplits(JobContext) - Method in class org.kepler.hadoop.io.input.DelimitedTextInputFormat
 
getSplits(JobContext) - Method in class org.kepler.hadoop.io.input.DuplicatedTextInputFormat
 
getSplits(JobContext) - Method in class org.kepler.hadoop.io.input.LineInputFormat
 
getSplits(JobContext) - Method in class org.kepler.hadoop.io.input.TokenInputFormat
Get the splits for a job.
getSQL() - Method in class org.ecoinformatics.seek.dataquery.DataQueryAction
Method to sql command
getSQL() - Method in class org.ecoinformatics.seek.dataquery.HsqlDataQueryAction
Get sql command
getSQLDelete(String, String) - Method in class org.kepler.util.sql.DatabaseType
Create a PrepareStatement for an SQL DELETE.
getSQLInsert(String, String, String) - Method in class org.kepler.util.sql.DatabaseType
Create a PreparedStatement for an SQL INSERT.
getSQLInsert(String, String, String, String) - Method in class org.kepler.util.sql.DatabaseType
Create a PreparedStatement for an SQL INSERT that uses an auto-increment column.
getSQLSelect(String, String) - Method in class org.kepler.util.sql.DatabaseType
Create a PreparedStatement for an SQL SELECT with no conditions.
getSQLSelect(String, String, String) - Method in class org.kepler.util.sql.DatabaseType
Create a PreparedStatement for an SQL SELECT.
getSQLString() - Method in class org.ecoinformatics.seek.querybuilder.QBApp
 
getSQLUpdate(String, String, String) - Method in class org.kepler.util.sql.DatabaseType
Create a PrepareStatement for an SQL UPDATE.
getSrid() - Method in class org.geon.LidarJobConfig
 
getSrmProtocol() - Method in class org.sdm.spa.actors.transport.SrmliteCopier
 
getSshClient(String, String, int) - Static method in class org.kepler.ssh.GsiSshSessionFactory
 
getsStart() - Method in class org.kepler.bio.util.BlastTabularResult
 
getStart() - Method in class org.kepler.tagging.Range
 
getStartButton() - Method in class ptolemy.gui.JTextAreaExec
Return the Start button.
getStartNode() - Method in interface ptolemy.graph.analysis.analyzer.SingleSourceLongestPathAnalyzer
Return the start node of this analyzer.
getStartNode() - Method in class ptolemy.graph.analysis.SingleSourceLongestPathAnalysis
Return the single source-node (start node) of this analyzer.
getStartNode() - Method in class ptolemy.graph.analysis.strategy.AllEdgeSingleSourceLongestPathStrategy
Return the single source-node (start node) of this analyzer.
getStartTime() - Method in class org.kepler.util.WorkflowRun
 
getStartTime() - Method in class org.kepler.workflowscheduler.gui.Schedule
Get the start time of the schedule
getStartTime() - Method in class ptolemy.actor.Director
Deprecated.
As of Ptolemy II 4.1, replaced by Director.getModelStartTime()
getStartTime() - Method in class ptolemy.domains.de.kernel.DEDirector
Deprecated.
As Ptolemy II 4.1, use Director.getModelStartTime() instead.
getStartTimeFormat() - Method in class org.kepler.workflowscheduler.gui.Schedule
Get the format of the start time string
getStartTimeISO8601() - Method in class org.kepler.util.WorkflowRun
 
getStartTimeLabel() - Method in class org.kepler.workflowscheduler.gui.Schedule
Get the label for display the start time.
getStartTimeZoneID() - Method in class org.kepler.workflowscheduler.gui.Schedule
Get the time zone id for the start time
getStartupCheck() - Method in class org.kepler.gui.WelcomeScreen
 
getState() - Method in class org.kepler.sms.SemanticTypeManagerMemento
Obtain the save state.
getState() - Method in class ptolemy.actor.Manager
Return the current state of execution of the manager.
getState() - Method in class ptolemy.domains.continuous.kernel.ContinuousIntegrator
Return the state of the integrator.
getState() - Method in class ptolemy.domains.modal.kernel.StateEvent
Return the state to which this event refers.
getStateDesc() - Method in class ptolemy.moml.unit.Solution
Get the state of the solution.
getStatement() - Method in class org.kepler.util.sql.DatabaseType
Get a Statement.
getStateModel() - Method in class ptolemy.vergil.modal.FSMGraphModel
Get the state model.
getStatistics(BaseStatistics) - Method in class org.kepler.bio.stratosphere.input.FASTAInputFormat
 
getStatistics(BaseStatistics) - Method in class org.kepler.bio.stratosphere.input.FASTAInputFormatBySize
 
getStatistics(BaseStatistics) - Method in class org.kepler.stratosphere.io.input.DataFileInputFormat
 
getStatus() - Method in class org.kepler.objectmanager.cache.DataCacheObject
 
getStatusCmd(String) - Method in class org.kepler.job.JobSupportCondor
Get the command to ask the status of the job. return: the String of command
getStatusCmd(String) - Method in class org.kepler.job.JobSupportFork
Get the command to ask the status of the job return: the String of command
getStatusCmd(String) - Method in class org.kepler.job.JobSupportLoadLeveler
Get the command to ask the status of the job return: the String of command
getStatusCmd(String) - Method in class org.kepler.job.JobSupportLSF
Get the command to ask the status of the job return: the String of command
getStatusCmd(String) - Method in class org.kepler.job.JobSupportMoab
Get the command to ask the status of the job return: the String of command
getStatusCmd(String) - Method in class org.kepler.job.JobSupportNCCS
Get the command to ask the status of the job return: the String of command
getStatusCmd(String) - Method in class org.kepler.job.JobSupportPBS
Get the command to ask the status of the job return: the String of command
getStatusCmd(String) - Method in class org.kepler.job.JobSupportSGE
Get the command to ask the status of the job return: the String of command
getStatusCmd(String) - Method in class org.kepler.job.JobSupportSLURM
Get the command to ask the status of the job return: the String of command
getStatusMessage() - Method in class ptolemy.actor.Manager
Return any messages, such as the amount of time consumed.
getStopTime() - Method in class ptolemy.actor.Director
Deprecated.
As of Ptolemy II 4.1, replaced by Director.getModelStopTime()
getStopTime() - Method in class ptolemy.actor.lib.PoissonClock
Deprecated.
As of Ptolemy II 4.1, replaced by PoissonClock.getModelStopTime()
getStopTime() - Method in class ptolemy.actor.lib.TimedSource
Deprecated.
As of Ptolemy II 4.1, replaced by TimedSource.getModelStopTime()
getStopTime() - Method in class ptolemy.domains.de.kernel.DEDirector
Deprecated.
As Ptolemy II 4.1, use Director.getModelStopTime() instead.
getStoredStateChangeEvent() - Method in interface org.kepler.gui.state.StoreStateChangeEvent
Get the stored state change event.
getString(int) - Method in class org.json.JSONArray
Get the string associated with an index.
getString(String) - Method in class org.json.JSONObject
Get the string associated with a key.
getString(String) - Method in class ptolemy.util.OrderedResourceBundle
Get a string for the given key from this resource bundle.
getStringParameterAsClass(String, Class[], Object[]) - Method in class ptolemy.actor.gui.Configuration
Instantiate the class named by a StringParameter in the configuration.
getStringValue(String) - Method in class org.kepler.provenance.RecordingParameters
Get the value of a string parameter.
getStringValue(Token) - Static method in class org.kepler.reporting.rio.util.TokenUtil
 
getStringValue(String) - Method in class ptolemy.gui.Query
Get the current value in the entry with the given name, and return as a String.
getStringValueForXMLTag(Element, String) - Method in class org.sdm.spa.CreateRequestFromResult
 
getSubdomain() - Method in class org.kepler.authentication.Domain
 
getSubjectId() - Method in class org.kepler.bio.util.BlastTabularResult
 
getSubmissionDate() - Method in class org.geon.LidarJobConfig
 
getSubmitCmd(String, String, Job) - Method in class org.kepler.job.JobSupportCondor
Submit command for Condor. return: the command for submission
getSubmitCmd(String, String, Job) - Method in class org.kepler.job.JobSupportFork
Submit command for fork return: the command for submission
getSubmitCmd(String, String, Job) - Method in class org.kepler.job.JobSupportLoadLeveler
Submit command for LoadLeveler return: the command for submission
getSubmitCmd(String, String, Job) - Method in class org.kepler.job.JobSupportLSF
Submit command for lsf return: the command for submission
getSubmitCmd(String, String, Job) - Method in class org.kepler.job.JobSupportMoab
Submit command for Moab return: the command for submission
getSubmitCmd(String, String, Job) - Method in class org.kepler.job.JobSupportNCCS
Submit command for NCCS return: the command for submission
getSubmitCmd(String, String, Job) - Method in class org.kepler.job.JobSupportPBS
Submit command for PBS return: the command for submission
getSubmitCmd(String, String, Job) - Method in class org.kepler.job.JobSupportSGE
Submit command for SGE return: the command for submission
getSubmitCmd(String, String, Job) - Method in class org.kepler.job.JobSupportSLURM
Submit command for SLURM return: the command for submission
getSubmitFile() - Method in class org.kepler.job.Job
 
getSubscribedPortChannel(IOPort) - Method in class ptolemy.actor.CompositeActor
Get the name of the channel that the port subscribes to.
getSubset() - Method in class org.cipres.kepler.SubsetChooser
 
getSubsetChooserPanel() - Method in class org.cipres.kepler.SubsetChooser
 
getSuccessStatus() - Method in class org.ecoinformatics.seek.dataquery.DBTablesGenerator
Method to get success status of generating table
GetSuffix(int) - Method in class ptolemy.data.expr.SimpleCharStream
Get the suffix.
GetSuffix(int) - Method in class ptolemy.moml.unit.SimpleCharStream
Get the suffix.
getSVGRenderingMethod() - Static method in class org.kepler.gui.StaticGUIResources
 
getSyntaxStyle() - Method in class ptolemy.actor.gui.TextEffigy
Return the syntax style for the document, if one has been identified, and null otherwise.
getSystemId() - Method in class com.microstar.xml.driver.SAXDriver
 
getSystemId() - Method in exception com.microstar.xml.XmlException
Get the URI of the entity containing the error.
getSystemProps() - Method in class org.resurgence.actor.StatusChecker
 
getSystemProps() - Method in class org.sdm.spa.CommandLine
 
getSystemProps() - Method in class org.sdm.spa.CommandLineExec
 
getTab(TableauFrame, String) - Method in class org.kepler.gui.TabManager
 
getTab(TableauFrame, Class) - Method in class org.kepler.gui.TabManager
returns the FIRST tab matching the given class param
getTabbedDialogMarginX() - Method in class com.jgoodies.forms.util.LayoutStyle
Returns this style's horizontal margin for dialogs that consist of a tabbed pane.
getTabbedDialogMarginY() - Method in class com.jgoodies.forms.util.LayoutStyle
Returns this style's vertical margin for dialogs that consist of a tabbed pane.
getTable() - Method in class org.ecoinformatics.seek.querybuilder.DBJoinPrcTable
 
getTable() - Method in class org.ecoinformatics.seek.querybuilder.DBTableField
Returns the owner object
getTable() - Method in class org.kepler.objectmanager.data.db.DSTableFieldDef
Returns the table for the field
getTable() - Method in class org.kepler.objectmanager.data.db.DSTableKeyDef
Returns the table for the field
getTable() - Method in class org.kepler.plotting.PlotEditor
 
getTable() - Method in class org.kepler.util.sql.Column
Get the containing table.
getTable(String) - Method in class org.kepler.util.sql.Schema
Get an existing table.
getTableau() - Method in class org.kepler.gui.TabbedCompositeTabComponent
 
getTableau() - Method in class ptolemy.actor.gui.TableauFrame
Get the tableau associated with this frame.
getTableau() - Method in interface ptolemy.actor.lib.gui.PlotterBaseInterface
Get the plotter tableau.
getTableau() - Method in class ptolemy.actor.lib.gui.PlotterBaseJavaSE
Get the plotter tableau.
getTableau() - Method in interface ptolemy.actor.lib.image.ImageDisplayInterface
Get the image tableau.
getTableau() - Method in class ptolemy.actor.lib.image.ImageDisplayJavaSE
Get the image tableau.
getTableauFactory() - Method in class ptolemy.actor.gui.Effigy
Get a tableau factory that offers views of this effigy, or null if none has been specified.
getTableByName(DSSchemaIFace, String) - Static method in class org.ecoinformatics.seek.querybuilder.DBUIUtils
Returns a table by name
getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class org.ecoinformatics.seek.ecogrid.CheckBoxTableCellEditor
Overwrite the parent class
getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class org.ecoinformatics.seek.ecogrid.TableTableCellEditor
Overwirte the parent class
getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class org.kepler.plotting.table.ColorTableCellEditor
 
getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class org.kepler.tagging.gui.ColorTableCellEditor
 
getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class org.kepler.workflowrunmanager.gui.DateCellEditor
 
getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class org.kepler.workflowrunmanager.gui.DurationCellEditor
 
getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class org.kepler.workflowrunmanager.gui.ExecIdCellEditor
 
getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class ptolemy.actor.gui.PortConfigurerDialog.ValidatingComboBoxCellEditor
 
getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class ptolemy.actor.gui.PortConfigurerDialog.ValidatingJTextFieldCellEditor
 
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.ecoinformatics.seek.ecogrid.CheckBoxTableCellRenderer
 
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.ecoinformatics.seek.ecogrid.TableTableCellRenderer
Method to render a cell with another table
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIBase.JComboBoxCellRenderer
 
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.kepler.plotting.table.ColorTableCellRenderer
 
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.kepler.tagging.gui.ColorTableCellRenderer
 
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.kepler.workflowrunmanager.gui.DurationCellRenderer
 
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.kepler.workflowrunmanager.gui.FormatRenderer
 
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.kepler.workflowrunmanager.gui.GroupableTableCellRenderer
 
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class org.kepler.workflowrunmanager.gui.WRMDefaultTableCellRenderer
 
getTableId() - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
Return the table Id
getTableJoins() - Method in class org.ecoinformatics.seek.querybuilder.DBTableDesktopPane
Returns the TableJoin Object
getTableKeyIFace() - Method in class org.ecoinformatics.seek.querybuilder.DBTableField
Get the iface obj representing the key
getTableName(String) - Method in class org.ecoinformatics.seek.dataquery.DBTableExistenceChecker
This method will return a tableName for a given URL in the storing table
getTableName() - Method in interface org.ecoinformatics.seek.querybuilder.DBDisplayItemIFace
Returns name of the table that the field belongs to
getTableName() - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
Return the table name
getTableName() - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableOverviewModel
The name of the table for this model
getTableName() - Method in class org.ecoinformatics.seek.querybuilder.DBTableField
Return the table name (returns the owner's name)
getTableName(String) - Method in class org.kepler.util.sql.DatabaseType
Get the name for a table, possibly adding a suffix.
getTableNames(String, String, String, String) - Method in class org.geon.LidarUtilities
 
getTables() - Method in class org.ecoinformatics.seek.querybuilder.DBQueryDef
Returns a vector of table names that would represent the "table" portion
getTables() - Method in class org.ecoinformatics.seek.querybuilder.DBTableDesktopPane
Returns the Vector of TableFrame Objects
getTables() - Method in class org.kepler.objectmanager.data.db.DSSchemaDef
Returns the vector of tables
getTables() - Method in interface org.kepler.objectmanager.data.db.DSSchemaIFace
Returns a Vector of table objects
getTableView() - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableOverviewModel
The table's view
getTabName() - Method in class org.ecoinformatics.seek.ecogrid.EcogridPreferencesTab
 
getTabName() - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.DatasetPanel
Implementation of TabPane getName()
getTabName() - Method in class org.ecoinformatics.seek.ecogrid.ServicesListModificationPanel
 
getTabName() - Method in class org.kepler.gui.BasicLibraryPane
Implementation of TabPane getName()
getTabName() - Method in class org.kepler.gui.ComponentLibraryPreferencesTab
 
getTabName() - Method in class org.kepler.gui.ComponentLibraryTab
Implementation of TabPane getName()
getTabName() - Method in class org.kepler.gui.kar.KARPreferencesTab
 
getTabName() - Method in class org.kepler.gui.PlotsEditorPanel
Get the name of the tab.
getTabName() - Method in class org.kepler.gui.PlotsPanel
Get the name of the tab.
getTabName() - Method in interface org.kepler.gui.PreferencesTab
This method should return the name of the tab which is used to label the tab in the PreferencesFrame.
getTabName() - Method in interface org.kepler.gui.TabPane
This method should return the name of the tab which is used to label the tab in the TabbedPane
getTabName() - Method in class org.kepler.gui.TabPaneExtensionExample
 
getTabName() - Method in class org.kepler.gui.WorkflowOutlineTabPane
 
getTabName() - Method in class org.kepler.objectmanager.cache.browser.CacheViewerTabPane
 
getTabName() - Method in class org.kepler.profiling.gui.ViewWatchingTabPane
Get the tab name.
getTabName() - Method in class org.kepler.reporting.gui.ItemsOfInterestPanel
Implementation of TabPane getName()
getTabName() - Method in class org.kepler.reporting.gui.PropertiesPanel
Implementation of TabPane getName()
getTabName() - Method in class org.kepler.reporting.gui.ReportDesignerPanel
Implementation of TabPane getName()
getTabName() - Method in class org.kepler.reporting.gui.ReportViewerPanel
Implementation of TabPane getName()
getTabName() - Method in class org.kepler.reporting.gui.ReportViewerTOC
Implementation of TabPane getName()
getTabName() - Method in class org.kepler.workflowrunmanager.gui.WorkflowRunManagerPanel
 
getTabName() - Method in class org.kepler.workflowscheduler.gui.configurationwizard.WorkflowRunEnginePreferenceTab
This method should return the name of the tab which is used to label the tab in the PreferencesFrame.
getTabName() - Method in class org.kepler.workflowscheduler.gui.configurationwizard.WorkflowSchedulerPreferenceTab
This method should return the name of the tab which is used to label the tab in the PreferencesFrame.
getTabName() - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerParentPanel
This method should return the name of the tab which is used to label the tab in the TabbedPane
getTabName() - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerServerInstallationInfoPanel
This method should return the name of the tab which is used to label the tab in the TabbedPane
getTabPanes(String) - Method in class org.kepler.gui.ClassicViewPane
 
getTabPanes(String) - Method in class org.kepler.gui.DefaultViewPane
 
getTabPanes(String) - Method in class org.kepler.gui.DualVerticalViewPane
 
getTabPanes(String) - Method in class org.kepler.gui.SingleViewPane
 
getTabPanes(String) - Method in interface org.kepler.gui.ViewPane
Look up the tab by the given name
getTabSize(int) - Method in class ptolemy.data.expr.SimpleCharStream
 
getTabSize(int) - Method in class ptolemy.moml.unit.SimpleCharStream
 
getTag() - Method in class org.kepler.hadoop.io.TaggedValue
 
getTag() - Method in class org.kepler.tagging.TagEvent
 
getTag() - Method in class org.kepler.tagging.TagReloadType
 
getTagBarDisplayUIs() - Static method in class org.kepler.tagging.gui.TagManagerUI
 
getTagBarInsertionUI() - Method in class org.kepler.tagging.TaggingContextManager
 
getTagBarOntModels() - Method in class org.kepler.sms.OntologyCatalog
 
getTagBarUI() - Method in class org.kepler.tagging.gui.TagBarDisplayUI
 
getTagBarUI() - Method in class org.kepler.tagging.gui.TagBarInsertionUI
 
getTagBarUI() - Method in class org.kepler.tagging.WindowIdentifier
 
getTagClassesForExecutionId(int) - Method in class org.kepler.provenance.DefaultQuery
 
getTagClassesForExecutionId(int) - Method in interface org.kepler.provenance.Queryable
Get a map of tags and their types (context, or tagee, currently "run" or "workflow") for an executionLSID
getTagClassesForExecutionId(int) - Method in class org.kepler.provenance.sql.SQLQueryV8
 
getTagEventListeners() - Method in class org.kepler.tagging.gui.TagBarUI
 
getTaggingContext() - Method in class org.kepler.tagging.TaggingContextManager
 
getTags(Collection<NamedObj>) - Static method in class org.kepler.tagging.Tagging
 
getTags(NamedObj) - Static method in class org.kepler.tagging.Tagging
Get the tags for a given named object
getTags() - Method in class org.kepler.util.WorkflowRun
 
getTagsAsFormattedString() - Method in class org.kepler.util.WorkflowRun
 
getTagsForExecutionId(int) - Method in class org.kepler.provenance.DefaultQuery
 
getTagsForExecutionId(int) - Method in interface org.kepler.provenance.Queryable
Get tags for an execution LSID
getTagsForExecutionId(int) - Method in class org.kepler.provenance.sql.SQLQueryV8
 
getTagTargets() - Method in class org.kepler.tagging.gui.ExistingTagsPanel
 
getTagTargets() - Method in class org.kepler.tagging.TaggingContextManager
 
getTagURNsForExecutionLSID(KeplerLSID) - Method in class org.kepler.provenance.sql.SQLQueryV8
 
getTail(Object) - Method in class ptolemy.vergil.actor.ActorGraphModel.LinkModel
Return the tail node of the specified edge.
getTail() - Method in class ptolemy.vergil.actor.LayoutHint.LayoutHintItem
Get the tail of this LayoutHint which is used to identify this hint.
getTail() - Method in class ptolemy.vergil.kernel.Link
Return the tail of this link.
getTail(Object) - Method in class ptolemy.vergil.modal.FSMGraphModel.ArcModel
Return the tail node of the specified edge.
getTailSite() - Method in class ptolemy.vergil.actor.LinkManhattanConnector
Override the base class to return a different site for each connection to a multiport.
getTarget() - Method in class org.kepler.gui.TabbedLookInsideAction
Get the target to be opened.
getTarget() - Method in class org.kepler.ssh.SshEvent
Return the target as string.
getTarget() - Method in class org.kepler.tagging.TagReloadType
 
getTarget() - Method in class ptolemy.actor.gui.DialogTableau
Get the target associated with this DialogTableau.
getTarget() - Method in class ptolemy.actor.gui.PtolemyDialog
Return the target.
getTarget() - Method in class ptolemy.vergil.toolbox.FigureAction
Return the target Ptolemy II object for this action, or null if none could be found.
getTargetClass() - Method in class ptolemy.vergil.actor.DocManager
Return the class of the target.
getTargetName() - Method in class org.kepler.sms.KeplerRefinementIOPort
 
getTargetPort() - Method in class org.kepler.sms.actors.SimpleMergeMapping
 
getTargetPort() - Method in class org.kepler.sms.actors.SimpleMergeTargetPort
 
getTargetPorts(IOPort) - Method in class org.kepler.sms.actors.MergeActor
 
getTargetPorts() - Method in class org.kepler.sms.actors.MergeEditorDialog
 
getTargetPorts(IOPort) - Method in class org.kepler.sms.actors.MergeEditorDialog
 
getTargets() - Method in class org.kepler.tagging.TagReloadType
 
getTaskStatusCmd(String) - Method in class org.kepler.job.JobSupportCondor
 
getTaskStatusCmd(String) - Method in class org.kepler.job.JobSupportFork
 
getTaskStatusCmd(String) - Method in class org.kepler.job.JobSupportLoadLeveler
 
getTaskStatusCmd(String) - Method in class org.kepler.job.JobSupportLSF
 
getTaskStatusCmd(String) - Method in class org.kepler.job.JobSupportMoab
Get the command to ask the status of each task return: the String of command
getTaskStatusCmd(String) - Method in class org.kepler.job.JobSupportNCCS
 
getTaskStatusCmd(String) - Method in class org.kepler.job.JobSupportPBS
 
getTaskStatusCmd(String) - Method in class org.kepler.job.JobSupportSGE
 
getTaskStatusCmd(String) - Method in class org.kepler.job.JobSupportSLURM
 
GetTaxa - Class in org.ecoinformatics.seek.taxon
The GetTaxa actor provides access to taxonomic data via the Taxonomic Object Service.
GetTaxa(CompositeEntity, String) - Constructor for class org.ecoinformatics.seek.taxon.GetTaxa
 
getTempFile() - Method in class org.kepler.objectmanager.cache.CacheManager
returns a temp file that is guaranteed to be around for one kepler session but could be deleted if the cache gets too full.
getTemplateNames() - Method in class org.kepler.ddp.actor.ExecutionChoice
Get the available template names.
getTension() - Method in class org.geon.LidarJobConfig
 
getTentativeState() - Method in class ptolemy.domains.continuous.kernel.ContinuousIntegrator
Return the tentative state.
getTerminal() - Method in class ptolemy.vergil.actor.PortConnectSite
Get the terminal to which this site belongs.
getText() - Method in class org.kepler.monitor.MonitorIcon
Gets the text of this icon
getText() - Method in class ptolemy.vergil.toolbox.TextEditorConfigureFactory
Return the current text of the text editor.
getText() - Method in interface ptolemy.vergil.toolbox.TextEditorFactory
Return the current text in the editor.
getText() - Method in class ptolemy.vergil.toolbox.TextEditorTableauFactory
Return the current text of the text editor.
getTextArea() - Method in interface ptolemy.actor.lib.gui.DisplayInterface
Return the object of the containing text area.
getTextArea() - Method in class ptolemy.actor.lib.gui.DisplayJavaSE
Return the object of the containing text area.
getTextHeight() - Method in class ptolemy.gui.Query
Get the preferred number of lines to be used for entry boxes created in using addTextArea().
getTextToEdit(Attribute) - Static method in class ptolemy.vergil.toolbox.TextEditorTableauFactory
Return the text value of the specified attribute.
getTextWidth() - Method in class ptolemy.gui.Query
Get the preferred width in characters to be used for entry boxes created in using addLine().
getThHfd3TaDiagraminSVG() - Static method in class org.geon.TernaryDiagram
 
getThisClass() - Method in class org.kepler.sms.NamedOntClass
 
getThisClass() - Method in class org.kepler.tagging.gui.CBItems.TruncatedNamedOntClass
 
getThreshold() - Method in class ptolemy.actor.util.FuzzyDoubleComparator
Deprecated.
Return the fuzziness threshold.
getTime() - Method in class ptolemy.data.SmoothToken
Return the time for which the values of this smooth token are valid.
getTimeHistory() - Method in class ptolemy.actor.lib.Recorder
Get the history of the time of each invocation of postfire().
getTimeInMilliseconds() - Method in class ptolemy.data.DateToken
Get time in milliseconds since January 1, 1970.
getTimeout() - Method in class org.kepler.ssh.GsiSshExec
 
getTimeout() - Method in class org.kepler.ssh.RemoteExec
 
getTimeout() - Method in class org.kepler.ssh.SshExec
 
getTimeout() - Method in class org.sdm.spa.actors.transport.FileCopierBase
 
getTimeRecord() - Method in class ptolemy.actor.lib.Recorder
Deprecated.
This method is deprecated. Use getTimeHistory().
getTimeRenderer() - Static method in class org.kepler.workflowrunmanager.gui.FormatRenderer
 
getTimeResolution() - Method in class ptolemy.actor.Director
Get the time resolution of the model.
getTimeResolution() - Method in class ptolemy.actor.LocalClock
Get the time resolution of the model.
getTimestampForTokenWrite(Integer) - Method in class org.kepler.provenance.DefaultQuery
Get the timestamp when a token was written.
getTimestampForTokenWrite(Integer) - Method in class org.kepler.provenance.prov.ProvQuery
Get the timestamp when a token was written.
getTimestampForTokenWrite(Integer) - Method in interface org.kepler.provenance.Queryable
Get the timestamp when a token was written.
getTimestampForTokenWrite(Integer) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the timestamp when a token was written.
getTimestampsForActorFiring(int) - Method in class org.kepler.provenance.DefaultQuery
 
getTimestampsForActorFiring(int) - Method in class org.kepler.provenance.prov.ProvQuery
Get the start and end timestamps of an actor firing.
getTimestampsForActorFiring(int) - Method in interface org.kepler.provenance.Queryable
Get the start and end timestamps of an actor firing.
getTimestampsForActorFiring(int) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the start and end timestamps of an actor firing.
getTimestampsForExecution(int) - Method in class org.kepler.provenance.DefaultQuery
 
getTimestampsForExecution(int) - Method in class org.kepler.provenance.prov.ProvQuery
Get the start and stop timestampes for a workflow execution id.
getTimestampsForExecution(int) - Method in interface org.kepler.provenance.Queryable
Get the start and end timestamps of an execution.
getTimestampsForExecution(int) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the start and end timestamps of an execution.
getTimestampsForTokenRead(Integer) - Method in class org.kepler.provenance.DefaultQuery
Get the timestamp(s) when a token was read.
getTimestampsForTokenRead(Integer) - Method in class org.kepler.provenance.prov.ProvQuery
Get the timestamp(s) when a token was read.
getTimestampsForTokenRead(Integer) - Method in interface org.kepler.provenance.Queryable
Get the timestamp(s) when a token was read.
getTimestampsForTokenRead(Integer) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the timestamp(s) when a token was read.
getTimeZone() - Method in class ptolemy.data.DateToken
Get the time zone of this date.
getTimezoneID() - Method in class ptolemy.data.DateToken
Get the time zone id of this date.
getTinyValue() - Method in class ptolemy.math.Quantization
Return the quantizable value nearest to and above zero.
getTitle() - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.SortableResultRecord
Method to get title
getTitle() - Method in class org.kepler.plotting.Plot
 
getTitle() - Method in class org.kepler.reporting.roml.ReportLayout
 
getTitle(WebViewable) - Static method in class org.kepler.webview.server.WebViewableUtilities
 
getTitle() - Method in class ptolemy.actor.gui.Tableau
Return the title of this tableau.
getTitle() - Method in class ptolemy.plot.PlotBox
Get the title of the graph, or an empty string if there is none.
getTitle() - Method in interface ptolemy.plot.PlotBoxInterface
Get the title of the graph, or an empty string if there is none.
getTitle() - Method in class ptolemy.vergil.icon.EditIconTableau
Override the base class to return a more reasonable title.
getToken(String) - Static method in class org.kepler.ddp.actor.pattern.DDPDataSource
Get the token for a DDPDataSource actor.
getToken() - Method in class org.kepler.hadoop.io.TokenWritable
Get the token.
getToken(int) - Method in class org.kepler.provenance.DefaultQuery
Get the Token.
getToken(int) - Method in interface org.kepler.provenance.Queryable
Get the Token.
getToken(String, String) - Static method in class org.kepler.reporting.rio.util.TokenUtil
Get the Token.
getToken() - Method in class org.kepler.stratosphere.io.input.TokenInputSplit
Get the token.
getToken() - Method in class ptolemy.actor.IOPortEvent
Return the token that was sent or received by the IOPort.
getToken() - Method in class ptolemy.actor.parameters.SharedParameter
Get the token contained by this variable.
getToken() - Method in class ptolemy.actor.TokenGotEvent
Deprecated.
Return the token that was received by the IOPort.
getToken() - Method in class ptolemy.actor.TokenSentEvent
Deprecated.
Return the token that was sent by the IOPort.
getToken() - Method in exception ptolemy.actor.TypedIOPort.RunTimeTypeCheckException
Return the token that caused the exception.
getToken() - Method in class ptolemy.data.expr.ASTPtRootNode
Return the evaluated token value of this node.
getToken() - Method in class ptolemy.data.expr.ConstraintMonitor
Override the base class to check whether the threshold constraint is satisfied.
getToken(int) - Method in class ptolemy.data.expr.MatrixParser
Get the specific Token.
getToken(int) - Method in class ptolemy.data.expr.PtParser
Get the specific Token.
getToken() - Method in class ptolemy.data.expr.Variable
Get the token contained by this variable.
getToken() - Method in class ptolemy.data.unit.BaseUnit
Get the token contained by this base unit.
getToken(int) - Method in class ptolemy.moml.unit.UParser
Get the specific Token.
getTokenArray() - Method in class ptolemy.actor.IOPortEvent
Return the array of tokens that the IOPort sent or received.
getTokenArray() - Method in class ptolemy.actor.TokenGotEvent
Deprecated.
Return the array of tokens that was received by the IOPort.
getTokenArray() - Method in class ptolemy.actor.TokenSentEvent
Deprecated.
Return the array of tokens that the IOPort sent.
getTokenClass() - Method in class org.geon.DBConnectionToken.DBConnectionType
Return the class for tokens that this basetype represents.
getTokenClass() - Method in class org.kepler.gis.data.BoundingBoxToken.BoundingBoxType
 
getTokenClass() - Method in class org.kepler.gis.data.GISToken.GISType
 
getTokenClass() - Method in class org.kepler.gis.data.RasterToken.RasterType
 
getTokenClass() - Method in class org.kepler.gis.data.VectorToken.VectorType
 
getTokenClass() - Method in class ptolemy.data.type.ActorType
Return the class for tokens that this basetype represents.
getTokenClass() - Method in class ptolemy.data.type.ArrayType
Return the class for tokens that this type represents.
getTokenClass() - Method in class ptolemy.data.type.BaseType
Return the class for tokens that this basetype represents.
getTokenClass() - Method in class ptolemy.data.type.FixType
Return the class for tokens that this type represents.
getTokenClass() - Method in class ptolemy.data.type.FunctionType
Return the class for tokens that this type represents.
getTokenClass() - Method in class ptolemy.data.type.MatrixType
Return the class for tokens that this type represents.
getTokenClass() - Method in class ptolemy.data.type.ObjectType
Return the class for tokens that this type represents.
getTokenClass() - Method in class ptolemy.data.type.RecordType
Return the class for tokens that this type represents.
getTokenClass() - Method in class ptolemy.data.type.test.TestToken.TestType
Return the class for tokens that this basetype represents.
getTokenClass() - Method in class ptolemy.data.type.TupleType
Return the class for tokens that this type represents.
getTokenClass() - Method in interface ptolemy.data.type.Type
Return the class for tokens that this type represents.
getTokenClass() - Method in class ptolemy.data.type.UnionType
Return the class for tokens that this type represents.
getTokenConsumptionRate(IOPort) - Static method in class ptolemy.actor.util.DFUtilities
Get the number of tokens that are consumed on the given port.
getTokenConsumptionRate() - Method in class ptolemy.domains.sdf.kernel.SDFIOPort
Deprecated.
Get the number of tokens that are consumed on every channel of this port.
getTokenInitConsumption(IOPort) - Static method in class ptolemy.actor.util.DFUtilities
Get the number of tokens that are initially available on the given input port after initialization.
getTokenInitProduction(IOPort) - Static method in class ptolemy.actor.util.DFUtilities
Get the number of tokens that are produced on the given port during initialization.
getTokenInitProduction() - Method in class ptolemy.domains.sdf.kernel.SDFIOPort
Deprecated.
Get the number of tokens that are produced on this port during initialization.
getTokenizedData(boolean) - Method in class org.kepler.util.DelimitedReader
returns the data as an array of vectors. each vector will have the same number of elements as there are columns in the data.
getTokenProductionRate(IOPort) - Static method in class ptolemy.actor.util.DFUtilities
Get the number of tokens that are produced on the given port.
getTokenProductionRate() - Method in class ptolemy.domains.sdf.kernel.SDFIOPort
Deprecated.
Get the number of tokens that are produced on the designated port of this Actor during each firing.
getTokens() - Method in class ptolemy.actor.gui.TokenEffigy
Return an array of the tokens in the file.
getTokensForExecution(int, boolean) - Method in class org.kepler.provenance.DefaultQuery
Get an sequence of tokens for an execution.
getTokensForExecution(int, Integer, boolean) - Method in class org.kepler.provenance.DefaultQuery
Get an sequence of tokens for an execution.
getTokensForExecution(int, Integer, boolean) - Method in class org.kepler.provenance.prov.ProvQuery
Get an sequence of tokens for an execution.
getTokensForExecution(int, boolean) - Method in interface org.kepler.provenance.Queryable
Get an sequence of tokens for an execution.
getTokensForExecution(int, Integer, boolean) - Method in interface org.kepler.provenance.Queryable
Get an sequence of tokens for an execution.
getTokensForExecution(int, Integer, boolean) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get an sequence of tokens for an execution.
getTokensForFiring(int, boolean) - Method in class org.kepler.provenance.DefaultQuery
 
getTokensForFiring(int, boolean) - Method in class org.kepler.provenance.prov.ProvQuery
Get tokens for a firing.
getTokensForFiring(int, boolean) - Method in interface org.kepler.provenance.Queryable
Get tokens for a firing.
getTokensForFiring(int, boolean) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get tokens for a firing.
getTokenType(int) - Method in class org.kepler.provenance.DefaultQuery
 
getTokenType(int) - Method in class org.kepler.provenance.prov.ProvQuery
Get the type of a token.
getTokenType(int) - Method in interface org.kepler.provenance.Queryable
Get the type of a token.
getTokenType(int) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the type of a token.
getTokenTypeForSerialization(Token) - Static method in class org.kepler.ddp.Utilities
Get the TokenType for a token.
getTokenValue(int) - Method in class org.kepler.provenance.DefaultQuery
 
getTokenValue(int) - Method in class org.kepler.provenance.prov.ProvQuery
Get the value of a token.
getTokenValue(int) - Method in interface org.kepler.provenance.Queryable
Get the value of a token.
getTokenValue(int) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the value of a token.
getTokenWritable() - Method in class org.kepler.hadoop.io.input.TokenInputSplit
Get a Writable for this split.
getToolBar() - Method in class org.kepler.gui.KeplerGraphFrame.Components
Get the toolbar.
getToolBar() - Method in class org.kepler.gui.KeplerGraphFrame
 
getToolTipText(MouseEvent) - Method in class org.mlc.swing.layout.DndList
 
getToolTipText(MouseEvent) - Method in class ptolemy.actor.gui.run.PaletteList
Return the tool tip text for an event.
getToplevel() - Method in class ptolemy.moml.MoMLParser
Get the top-level entity associated with this parser, or null if none.
getTopLevelLabel() - Method in class org.kepler.sms.NamedOntModel
 
getTopPanel() - Method in class org.kepler.gui.AbstractDialogTab
get the Component that will be displayed in the NORTH section of the BorderLayout.
getTopPanel() - Method in class org.kepler.gui.DialogAnnotationsTab
get the Component that will be displayed in the NORTH section of the BorderLayout.
getTopPanel() - Method in class org.kepler.gui.DialogGeneralTab
getTopPanel
getTopPanel() - Method in class org.kepler.gui.DialogParametersTab
getTopPanel
getTopPanel() - Method in class org.kepler.gui.DialogPortsTab
get the Component that will be displayed in the NORTH section of the BorderLayout.
getTopPanel() - Method in class org.kepler.gui.DialogUnitsTab
get the Component that will be displayed in the NORTH section of the BorderLayout.
getTotalExecutionTimeForActor(KeplerLSID, KeplerLSID, String) - Method in class org.kepler.provenance.DefaultQuery
Get the total execution time for an actor.
getTotalExecutionTimeForActor(KeplerLSID, KeplerLSID, String) - Method in interface org.kepler.provenance.Queryable
Get the total execution time for an actor.
getTotalIOBytesForActor(KeplerLSID, Integer, String, boolean) - Method in class org.kepler.provenance.DefaultQuery
Get the total number of bytes read or or written by an actor over all its ports.
getTotalIOBytesForActor(KeplerLSID, Integer, String, boolean) - Method in interface org.kepler.provenance.Queryable
Get the total number of bytes read or or written by an actor over all its ports.
getTotalNumParticularTFBS(String) - Method in class org.sdm.spa.actors.piw.viz.Sequence
Returns the number of times the given tfbs appears in this sequence.
getTotalSecondsForDuration(int) - Method in class org.kepler.workflowrunmanager.DurationQueryParse
 
getTransferData(DataFlavor) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
If the data was requested in the "java.lang.String" flavor, return the String representing the selection.
getTransferData(DataFlavor) - Method in class org.ecoinformatics.seek.querybuilder.DBTableField
If the data was requested in the "java.lang.String" flavor, return the String representing the selection.
getTransferData(DataFlavor) - Method in class org.kepler.reporting.gui.DragAndDropPanel
One of three methods defined by the Transferable interface.
getTransferData(DataFlavor) - Method in class org.kepler.reporting.gui.JLabelTransferable
 
getTransferData(DataFlavor) - Method in class org.kepler.sms.gui.NamedOntClassTransferable
Return an object that represents the data contained within this transferable with the given flavor.
getTransferData(DataFlavor) - Method in class org.mlc.swing.layout.TransferableWrapper
Get the transfer data for a flavor.
getTransferData(DataFlavor) - Method in class ptolemy.vergil.toolbox.PtolemyTransferable
Return an object that represents the data contained within this transferable with the given flavor.
getTransferDataFlavors() - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
Returns the array of mFlavors in which it can provide the data.
getTransferDataFlavors() - Method in class org.ecoinformatics.seek.querybuilder.DBTableField
Returns the array of flavors in which it can provide the data.
getTransferDataFlavors() - Method in class org.kepler.reporting.gui.DragAndDropPanel
One of three methods defined by the Transferable interface.
getTransferDataFlavors() - Method in class org.kepler.reporting.gui.JLabelTransferable
 
getTransferDataFlavors() - Method in class org.kepler.sms.gui.NamedOntClassTransferable
Return the data flavors that this transferable supports.
getTransferDataFlavors() - Method in class org.mlc.swing.layout.TransferableWrapper
Get the transfer data flavors.
getTransferDataFlavors() - Method in class ptolemy.vergil.toolbox.PtolemyTransferable
Return the data flavors that this transferable supports.
getTransferSize() - Static method in class ptolemy.media.javasound.LiveSound
Get the array length (in samples per channel) to use for capturing and playing samples via the putSamples() and getSamples() methods.
getTransferSize() - Method in class ptolemy.media.javasound.LiveSoundCommon
Get the array length (in samples per channel) to use for capturing and playing samples via the putSamples() and getSamples() methods.
getTransferSize() - Method in interface ptolemy.media.javasound.LiveSoundInterface
Get the array length (in samples per channel) to use for capturing and playing samples via the putSamples() and getSamples() methods.
getTransition() - Method in class ptolemy.domains.modal.kernel.FSMTransitionParameter
Set the transition that corresponds to the parameters.
getTransitionReferredInputPorts(List) - Method in class ptolemy.domains.modal.kernel.NonStrictFSMDirector
Given a list of transitions, get a set of referred input ports in the guard expressions of all the transitions leaving this state.
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class org.kepler.gui.OntologyTreeCellRenderer
 
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class ptolemy.vergil.tree.PtolemyTreeCellRenderer
Create a new rendition for the given object.
getTreeItemIndexInformation(int) - Method in class org.kepler.objectmanager.library.LibraryManager
Return a populated LibItem for the given liid.
getTreeModel() - Method in class org.kepler.objectmanager.library.LibraryManager
 
getTreeModel(File) - Method in class org.kepler.objectmanager.library.LibraryManager
 
getTreePath(int) - Method in class org.kepler.gui.LibrarySearchResults
returns the result at the specified index
getTrueValue() - Method in class org.kepler.util.sql.DatabaseType
Get a string representation of the true value for a boolean column.
getTrueValue() - Method in class org.kepler.util.sql.HSQL
Get a string representation of the true value for a boolean column.
getTrueValue() - Method in class org.kepler.util.sql.PostgreSQL
Get a string representation of the true value for a boolean column.
getType(int) - Method in class com.microstar.xml.driver.SAXDriver
 
getType(String) - Method in class com.microstar.xml.driver.SAXDriver
 
getType(String, String) - Method in class com.microstar.xml.driver.SAXDriver
 
getType() - Method in interface org.ecoinformatics.seek.querybuilder.QBBuilderInterface
 
getType() - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneAdvanced
 
getType() - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneIntermediate
 
getType() - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
 
getType() - Method in class org.geon.DBConnectionToken
Return the type of this token.
getType() - Method in exception org.kepler.authentication.AuthenticationException
get the type of this exception
getType() - Method in class org.kepler.gis.data.BoundingBoxToken
Get the token type.
getType() - Method in class org.kepler.gis.data.GISToken
Get the token type.
getType() - Method in class org.kepler.gis.data.RasterToken
 
getType() - Method in class org.kepler.gis.data.VectorToken
Get the token type.
getType() - Method in class org.kepler.kar.KARCacheContent
 
getType() - Method in class org.kepler.kar.KAREntry
 
getType() - Method in class org.kepler.kar.karxml.KarXml.KarEntry
 
getType() - Method in class org.kepler.objectmanager.cache.CacheContent
 
getType() - Method in class org.kepler.objectmanager.cache.DataCacheFileObject
 
getType() - Method in interface org.kepler.objectmanager.data.db.Constraint
 
getType() - Method in class org.kepler.objectmanager.data.db.ForeignKey
Method to get type
getType() - Method in class org.kepler.objectmanager.data.db.JoinConditionConstraint
Method to get type
getType() - Method in class org.kepler.objectmanager.data.db.NotNullConstraint
method to get type
getType() - Method in class org.kepler.objectmanager.data.db.PrimaryKey
Method to get constrain type
getType() - Method in class org.kepler.objectmanager.data.db.UniqueKey
Method to get constrain type
getType() - Method in class org.kepler.objectmanager.library.LibItem
 
getType() - Method in class org.kepler.reporting.rio.Item
 
getType() - Method in class org.kepler.reporting.rio.StaticReportItem
 
getType() - Method in class org.kepler.reporting.rio.StaticReportItemHR
 
getType() - Method in class org.kepler.reporting.rio.StaticReportItemImage
 
getType() - Method in class org.kepler.reporting.rio.StaticReportItemLabel
 
getType() - Method in class org.kepler.reporting.rio.StaticReportItemSection
 
getType() - Method in class org.kepler.reporting.rio.StaticReportItemText
 
getType() - Method in class org.kepler.sms.KeplerCompositeIOPort
Returns a record type of the encapsulated ports, where the labels are the port names.
getType() - Method in class org.kepler.sms.KeplerRefinementIOPort
...
getType() - Method in class org.kepler.sms.KeplerVirtualIOPort
 
getType() - Method in class org.kepler.tagging.TagReloadType
 
getType() - Method in class org.kepler.util.ProvenanceStore
 
getType() - Method in class org.kepler.util.sql.Column
Get the data type.
getType(String) - Static method in class org.kepler.util.sql.DatabaseFactory
Get the DatabaseType from a name.
getType(String) - Static method in enum org.kepler.util.sql.DatabaseFactory.Parameter
Find the Parameter from a name.
getType() - Method in class org.kepler.util.WorkflowRun
 
getType() - Method in class org.mlc.swing.layout.BeanProperty
Returns the value of the type property
getType() - Method in class ptolemy.actor.FiringEvent
Return the type of activation that this event represents.
getType() - Method in class ptolemy.actor.TypedIOPort
Return the type of this port.
getType() - Method in class ptolemy.data.ActorToken
Return the type of this token.
getType() - Method in class ptolemy.data.ArrayToken
Return the type of this ArrayToken.
getType() - Method in class ptolemy.data.AWTImageToken
 
getType() - Method in class ptolemy.data.BooleanMatrixToken
Return the type of this token.
getType() - Method in class ptolemy.data.BooleanToken
Return the type of this token.
getType() - Method in class ptolemy.data.ComplexMatrixToken
Return the type of this token.
getType() - Method in class ptolemy.data.ComplexToken
Return the type of this token.
getType() - Method in class ptolemy.data.DateToken
Return the type of this token.
getType() - Method in class ptolemy.data.DoubleMatrixToken
Return the type of this token.
getType() - Method in class ptolemy.data.DoubleToken
Return the type of this token.
getType() - Method in class ptolemy.data.EventToken
Return the type of this token.
getType() - Method in class ptolemy.data.expr.ASTPtRootNode
Return the type of this node.
getType() - Method in class ptolemy.data.expr.ConcreteMatrixToken
Return the type of this token.
getType() - Method in class ptolemy.data.expr.ConcreteScalarToken
Return the type of this token.
getType(String) - Method in class ptolemy.data.expr.ExplicitScope
Look up and return the type of the value with the specified name in the scope.
getType() - Method in class ptolemy.data.expr.GeneralToken
Return the type of this token.
getType(String) - Method in class ptolemy.data.expr.NamedConstantsScope
Look up and return the type of the value with the specified name in the scope.
getType(String) - Method in class ptolemy.data.expr.NestedScope
Look up and return the type of the value with the specified name in the scope.
getType(String) - Method in interface ptolemy.data.expr.ParserScope
Look up and return the type of the value with the specified name in the scope.
getType() - Method in class ptolemy.data.expr.UnknownToken
Return the type of this token.
getType() - Method in class ptolemy.data.expr.Variable
Get the type of this variable.
getType(String) - Method in class ptolemy.data.expr.Variable.VariableScope
Look up and return the type of the attribute with the specified name in the scope.
getType() - Method in class ptolemy.data.FixMatrixToken
Return the type of this token.
getType() - Method in class ptolemy.data.FixToken
Return the type of this token.
getType() - Method in class ptolemy.data.FloatToken
Return the type of this token.
getType() - Method in class ptolemy.data.FunctionToken
Return the type of this token.
getType() - Method in class ptolemy.data.IntMatrixToken
Return the type of this token.
getType() - Method in class ptolemy.data.IntToken
Return the type of this token.
getType() - Method in class ptolemy.data.LongMatrixToken
Return the type of this token.
getType() - Method in class ptolemy.data.LongToken
Return the type of this token.
getType() - Method in class ptolemy.data.ObjectToken
Return the type of this token.
getType() - Method in class ptolemy.data.PetiteToken
Return the type of this token.
getType() - Method in class ptolemy.data.RecordToken
Return the type of this token.
getType() - Method in class ptolemy.data.ScalarToken
Return the type of this token.
getType() - Method in class ptolemy.data.ShortToken
Return the type of this token.
getType() - Method in class ptolemy.data.StringToken
Return the type of this token.
getType() - Method in class ptolemy.data.Token
Return the type of this token.
getType() - Method in class ptolemy.data.TupleToken
Return the type of this token, which is a TupleType populated with the types of the value of this token.
getType() - Method in class ptolemy.data.type.test.TestToken
Return the type of this token.
getType() - Method in interface ptolemy.data.type.Typeable
Return the type of this object.
getType() - Method in class ptolemy.data.UnionToken
Return the type of this token.
getType() - Method in class ptolemy.data.UnsignedByteToken
Return the type of this token.
getType() - Method in class ptolemy.data.UnsizedArrayToken
Return the type of this token.
getType() - Method in class ptolemy.data.UnsizedFixToken
Return the type of this token.
getType() - Method in class ptolemy.data.XMLToken
Return the type of this token.
getType(String) - Method in class ptolemy.domains.modal.kernel.FSMActor.PortScope
Look up and return the type of the attribute with the specified name in the scope.
getType() - Method in class ptolemy.domains.modal.kernel.ia.InterfaceAutomatonTransition
Return the transition type.
getType() - Method in class ptolemy.moml.unit.Unit
Get the type (represented as a int array) of this Unit.
getType() - Method in class ptolemy.vergil.toolbox.GraphicElement
Return the type of this graphic element.
getTypeForTag(String) - Method in class org.kepler.provenance.DefaultQuery
 
getTypeForTag(String) - Method in interface org.kepler.provenance.Queryable
Get the type of a tag, null if none
getTypeForTag(String) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the type of a tag, null if none
getTypeFromString(String) - Static method in class org.kepler.ddp.actor.pattern.Types
Get the Ptolemy type from a string.
getTypeHash() - Method in class org.geon.DBConnectionToken.DBConnectionType
Return this type's node index in the (constant) type lattice.
getTypeHash() - Method in class org.kepler.gis.data.BoundingBoxToken.BoundingBoxType
 
getTypeHash() - Method in class org.kepler.gis.data.GISToken.GISType
 
getTypeHash() - Method in class org.kepler.gis.data.RasterToken.RasterType
 
getTypeHash() - Method in class org.kepler.gis.data.VectorToken.VectorType
 
getTypeHash() - Method in class ptolemy.data.type.ActorType
Return this type's node index in the (constant) type lattice.
getTypeHash() - Method in class ptolemy.data.type.BaseType.BooleanType
 
getTypeHash() - Method in class ptolemy.data.type.BaseType.ComplexType
 
getTypeHash() - Method in class ptolemy.data.type.BaseType.DateType
 
getTypeHash() - Method in class ptolemy.data.type.BaseType.DoubleType
 
getTypeHash() - Method in class ptolemy.data.type.BaseType.EventType
 
getTypeHash() - Method in class ptolemy.data.type.BaseType.FloatType
 
getTypeHash() - Method in class ptolemy.data.type.BaseType.GeneralType
 
getTypeHash() - Method in class ptolemy.data.type.BaseType
Return a perfect hash for this type.
getTypeHash() - Method in class ptolemy.data.type.BaseType.IntType
 
getTypeHash() - Method in class ptolemy.data.type.BaseType.LongType
 
getTypeHash() - Method in class ptolemy.data.type.BaseType.NilType
 
getTypeHash() - Method in class ptolemy.data.type.BaseType.PetiteType
 
getTypeHash() - Method in class ptolemy.data.type.BaseType.ScalarType
 
getTypeHash() - Method in class ptolemy.data.type.BaseType.ShortType
 
getTypeHash() - Method in class ptolemy.data.type.BaseType.StringType
 
getTypeHash() - Method in class ptolemy.data.type.BaseType.UnknownType
 
getTypeHash() - Method in class ptolemy.data.type.BaseType.UnsignedByteType
 
getTypeHash() - Method in class ptolemy.data.type.BaseType.XmlTokenType
 
getTypeHash() - Method in class ptolemy.data.type.StructuredType
Return a perfect hash for this type.
getTypeHash() - Method in class ptolemy.data.type.test.TestToken.TestType
Return this type's node index in the (constant) type lattice.
getTypeHash() - Method in interface ptolemy.data.type.Type
Return a perfect hash for this type.
getTypeMap() - Method in class org.kepler.hadoop.util.DDPPatternActorUtil
 
getTypeName() - Method in class org.kepler.kar.handlers.ActorMetadataKAREntryHandler
Method for backwards compatibility with KAR version 1.0 KAR version 2.0 and 2.1 uses the binary class name as the type.
getTypeName() - Method in class org.kepler.kar.handlers.JARKAREntryHandler
KAR version 1.0 type name.
getTypeName() - Method in class org.kepler.kar.handlers.ModuleTxtKAREntryHandler
The getTypeName() method must return the type of object that this KAREntryHandler saves.
getTypeName() - Method in class org.kepler.kar.handlers.ProvKAREntryHandler
Returns null since this is only used for 1.0 KARs.
getTypeName() - Method in class org.kepler.kar.handlers.ReportInstanceKAREntryHandler
Method for backwards compatibility with KAR version 1.0 KAR version 2.0 uses the binary class name as the type.
getTypeName() - Method in class org.kepler.kar.handlers.ReportLayoutKAREntryHandler
Method for backwards compatibility with KAR version 1.0 KAR version 2.0 uses the binary class name as the type.
getTypeName() - Method in class org.kepler.kar.handlers.WorkflowRunEntryHandler
 
getTypeName() - Method in interface org.kepler.kar.KAREntryHandler
The getTypeName() method must return the type of object that this KAREntryHandler saves.
getTypeName() - Method in class ptolemy.actor.FiringEvent.FiringEventType
Return the name of this event type.
getTypes(Object) - Method in class org.kepler.sms.SemanticTypeManager
Obtain the set of types assigned to the given object
getTypesAsNamedOntClasses(Object) - Method in class org.kepler.sms.SemanticTypeManager
 
getTypeTerm() - Method in class ptolemy.actor.TypedIOPort
Return an InequalityTerm encapsulating the type of this port.
getTypeTerm(String) - Method in class ptolemy.data.expr.ExplicitScope
Look up and return the type term for the specified name in the scope.
getTypeTerm(String) - Method in class ptolemy.data.expr.NamedConstantsScope
Look up and return the type term for the specified name in the scope.
getTypeTerm(String) - Method in class ptolemy.data.expr.NestedScope
Look up and return the type term for the specified name in the scope.
getTypeTerm(String) - Method in interface ptolemy.data.expr.ParserScope
Look up and return the type term for the specified name in the scope.
getTypeTerm() - Method in class ptolemy.data.expr.Variable
Return an InequalityTerm whose value is the type of this variable.
getTypeTerm(String) - Method in class ptolemy.data.expr.Variable.VariableScope
Look up and return the type term for the specified name in the scope.
getTypeTerm(String) - Method in class ptolemy.data.type.RecordType
Return the InequalityTerm representing the type of the specified label.
getTypeTerm() - Method in interface ptolemy.data.type.Typeable
Return an InequalityTerm representing this object.
getTypeTerm(String) - Method in class ptolemy.data.type.UnionType
Return the InequalityTerm representing the type of the specified label.
getTypeTerm(String) - Method in class ptolemy.domains.modal.kernel.FSMActor.PortScope
Look up and return the type term for the specified name in the scope.
getUISettingsProperty() - Static method in class org.kepler.util.StaticResources
Search for the ResourceBundle containing the ui settings.
getUiSVGIconMappingsByClass() - Static method in class org.kepler.util.StaticResources
get the configuration property for the svg icon class mappings
getUiSVGIconMappingsByLSID() - Static method in class org.kepler.util.StaticResources
get the configuraiton property for the svg icon lsid mappings
getUndefinedList(String) - Method in class ptolemy.data.expr.PtParser
Deprecated.
Use a visitor with a ParseTreeFreeVariableCollector instead.
getUndoInfo(NamedObj) - Static method in class ptolemy.kernel.undo.UndoStackAttribute
Get the UndoStackAttribute associated with the given object.
getUndoMoML() - Method in class ptolemy.moml.UndoContext
Get the undo MoML for this element as it currently stands.
getUnit() - Method in class org.kepler.objectmanager.data.db.Attribute
Return the unit for this Attribute
getUnit(Unit) - Static method in class ptolemy.moml.unit.UnitLibrary
Search Library for Unit equal to a particular unit.
getUnit() - Method in class ptolemy.moml.unit.UnitTerm
Get the element if it is a Unit.
getUnitByName(String) - Static method in class ptolemy.moml.unit.UnitLibrary
Search the Library for a unit with a particular name.
getUnitCategoryIndex(String) - Static method in class ptolemy.data.unit.UnitUtilities
Return the index assigned to the specified unit category.
getUnitConstraints() - Method in class ptolemy.moml.unit.UnitAttribute
Get the UnitConstraints.
getUnitConverter() - Static method in class com.jgoodies.forms.layout.Sizes
Returns the current UnitConverter.
getUnitExpr() - Method in class ptolemy.moml.unit.UnitAttribute
Get the Unit Expression.
getUnitExpr() - Method in class ptolemy.moml.unit.UnitTerm
Get the element if it is a UnitExpr.
getUnitsByType(Unit) - Static method in class ptolemy.moml.unit.UnitLibrary
Search Library for all Units with type equal to this one.
getUnitType() - Method in class org.kepler.objectmanager.data.db.Attribute
accessor method
getUnrelatedComponentsPadX() - Method in class com.jgoodies.forms.util.LayoutStyle
Returns a horizontal gap used to separate unrelated controls.
getUnrelatedComponentsPadY() - Method in class com.jgoodies.forms.util.LayoutStyle
Returns a vertical gap used to separate unrelated controls.
getUnsatisfiedDependencies(List<String>) - Static method in class org.kepler.kar.ModuleDependencyUtil
Check dependencies against currently running modules to see if they're satisfied.
getUnscaledValue() - Method in class ptolemy.math.FixPoint
Return the unscaled BigInteger value used to represent this FixPoint value.
getUnzippedFilePath(String) - Method in class org.ecoinformatics.seek.datasource.EcogridCompressedDataCacheItem
This method will get a file path which matches the given file extension in unzipped file list.
getURI(int) - Method in class com.microstar.xml.driver.SAXDriver
 
getURI() - Method in class ptolemy.kernel.attributes.URIAttribute
Get the URI that has been set by setURI(), or null if there is none.
getURL(String) - Method in class org.ecoinformatics.seek.querybuilder.QBApplet
Returns an URL from the codebase
getURL() - Method in class org.kepler.cloudsharing.fs.FileSystemClient
Get the URL for the uploaded results.
getURL() - Method in class org.kepler.objectmanager.data.db.Entity
 
GetURL - Class in org.kepler.webview.server.app
App to perform HTTP GET and return body.
GetURL() - Constructor for class org.kepler.webview.server.app.GetURL
 
getURL() - Method in class org.kepler.workflowscheduler.gui.WorkflowRunEngine
Get the url of the workflow run engine
getURL() - Method in class ptolemy.kernel.attributes.URIAttribute
Get a URL representation of the URI that has been set by setURI(), or null if there is none.
getUsage() - Method in class org.kepler.CommandLineArgument
Get a string for the command line usage.
getUser() - Method in class org.kepler.util.WorkflowRun
 
getUser() - Method in class org.sdm.spa.actors.transport.vo.ConnectionDetails
 
getUserChannelMap(String[]) - Method in class org.kepler.data.datasource.dataturbine.DataTurbine
Return a channel map that contains only channels with duration >=0 and that were requested.
getUserDefinedType() - Method in class org.kepler.reporting.rio.DynamicReportItem
 
getUserForExecution(Integer) - Method in class org.kepler.provenance.DefaultQuery
 
getUserForExecution(KeplerLSID) - Method in class org.kepler.provenance.DefaultQuery
 
getUserForExecution(KeplerLSID) - Method in interface org.kepler.provenance.Queryable
Get the user for a specific execution LSID.
getUserForExecution(Integer) - Method in interface org.kepler.provenance.Queryable
Get the user for a specific execution id.
getUserForExecution(KeplerLSID) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the user for a specific execution LSID.
getUserForExecution(Integer) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the user for a specific execution id.
getUserId() - Method in class org.geon.LidarJobConfig
 
getUserJobs(String) - Method in class org.geon.LidarJobDB
Get all of a user's job entries
getUserLevelDocumentation() - Method in class ptolemy.vergil.basic.KeplerDocumentationAttribute
Return the user level documentation.
getUsername() - Method in class org.kepler.authentication.Domain
 
getUsername() - Static method in class org.kepler.authentication.gui.GAMALoginGUI
get the username from the gui
getUsername() - Method in class org.kepler.authentication.gui.LDAPLoginGUI
return the username
getUserName() - Method in class org.kepler.authentication.ProxyEntity
 
getUsers(String) - Method in class org.geon.LidarJobDB
Get existing/pending users list.
getUTerms() - Method in class ptolemy.moml.unit.UnitExpr
Get the UnitTerms in this UnitExpr.
GetUTMZone - Class in org.kepler.gis.actor.proj
Get the UTM Zone for a gis dataset.
GetUTMZone(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.proj.GetUTMZone
 
getValaibleTimeZoneIDs() - Method in class org.kepler.workflowscheduler.gui.ServerTimeZoneIDParser
Get the ids from the server response
getValue(int) - Method in class com.microstar.xml.driver.SAXDriver
 
getValue(String) - Method in class com.microstar.xml.driver.SAXDriver
 
getValue(String, String) - Method in class com.microstar.xml.driver.SAXDriver
 
getValue() - Method in class org.camera.service.NameValuePair
 
getValue(int, int) - Method in class org.ecoinformatics.seek.gis.java_gis.Grid
 
getValue() - Method in class org.geon.DBConnectionToken
Return the java.sql.connection.
getValue() - Method in class org.kepler.actor.rest.NameValuePair
 
getValue() - Method in class org.kepler.CommandLineArgument
Get the value of the first argument.
getValue(int) - Method in class org.kepler.CommandLineArgument
Get the value of the argument at a specific index.
getValue(String) - Static method in class org.kepler.CommandLineArgument
Get the value of the first argument for a flag.
getValue() - Method in class org.kepler.configuration.ConfigurationProperty
return the value of this property.
getValue() - Method in enum org.kepler.ddp.Utilities.TokenType
 
getValue() - Method in class org.kepler.hadoop.io.KeyValuePair
 
getValue() - Method in class org.kepler.reporting.rio.ItemLabel
 
getValue() - Method in class org.kepler.reporting.rio.ItemValue
 
getValue(Token, int, int) - Static method in class org.kepler.reporting.rio.util.TokenUtil
 
getValue() - Method in class org.kepler.stratosphere.type.ByteArray
Get the byte array.
getValue() - Method in class ptolemy.actor.lib.gui.SliderSource.SliderFrame
Get the value of the slider.
getValue() - Method in class ptolemy.actor.util.ArrayElementTypeFunction
Return the current value of this monotonic function.
getValue() - Method in class ptolemy.actor.util.ArrayOfTypesFunction
Return the current value of this monotonic function.
getValue() - Method in class ptolemy.actor.util.ConstructAssociativeType
Return a RecordType with field names equal to the given port names, and field types equal to the current inferred or declared type of the corresponding ports.
getValue() - Method in class ptolemy.actor.util.ExtractFieldType
Return the current value of this monotonic function.
getValue() - Method in class ptolemy.actor.util.GLBFunction
Return the current value of this monotonic function.
getValue() - Method in class ptolemy.data.AWTImageToken
Return the java.awt.Image object associated with this token.
getValue() - Method in class ptolemy.data.DateToken
Get the time since January 1, 1970 in the given precision.
getValue() - Method in class ptolemy.data.expr.Token
An optional attribute value of the Token.
getValue() - Method in class ptolemy.data.ObjectToken
Return the value of the token, a reference to an object.
getValue() - Method in class ptolemy.data.type.MonotonicFunction
Return the current value of this monotonic function given the current value of the variables returned by getVariables().
getValue() - Method in class ptolemy.data.type.ObjectType
Get the actual value.
getValue() - Method in class ptolemy.data.type.TypeConstant
Return the constant type represented by this term.
getValue() - Method in interface ptolemy.graph.InequalityTerm
Return the value of this term.
getValue() - Method in class ptolemy.graph.test.TestConstant
Return the constant String value of this term.
getValue() - Method in class ptolemy.graph.test.TestVariable
Return the String value of this term.
getValue() - Method in class ptolemy.moml.unit.Token
An optional attribute value of the Token.
getValueAsString() - Method in class ptolemy.data.expr.Variable
Get the value of the attribute, which is the evaluated expression.
getValueAsString() - Method in class ptolemy.kernel.util.AbstractSettableAttribute
Get the value of the attribute, which is the evaluated expression.
getValueAsString() - Method in class ptolemy.kernel.util.ConfigurableAttribute
Get the value of the attribute, which is the evaluated expression.
getValueAsString() - Method in class ptolemy.kernel.util.Location
Get the value of the attribute, which is the evaluated expression.
getValueAsString() - Method in interface ptolemy.kernel.util.Settable
Get the value of the attribute, which is the evaluated expression.
getValueAsString() - Method in class ptolemy.vergil.actor.LayoutHint
Get the value of the attribute, which is the evaluated expression.
getValueAsString() - Method in class ptolemy.vergil.actor.lib.MonitorReceiverAttribute
Get the value of the attribute, which is the evaluated expression.
getValueAsString() - Method in class ptolemy.vergil.kernel.attributes.AttributeValueAttribute
Get the value of the attribute, which is the evaluated expression.
getValueAt(int, int) - Method in class org.ecoinformatics.seek.ecogrid.ServicesDisplayTableModel
Method to get value
getValueAt(int, int) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelAdv
Gets the value of the row col
getValueAt(int, int) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelBase
Gets the value of the row col
getValueAt(int, int) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelStd
Gets the value of the row, col
getValueAt(int, int) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableOverviewModel
Gets the value of the row, column
getValueAt(int, int) - Method in class org.kepler.gui.ComponentLibraryPreferencesTab.ComponentSourceTableModel
 
getValueAt(int, int) - Method in class org.kepler.workflowrunmanager.gui.WorkflowRunManagerTableModel
 
getValueAt(int, int) - Method in class org.kepler.workflowscheduler.gui.configurationwizard.KnownWorkflowRunEngineTableModel
Get the value of the cell at row and column.
getValueAt(int, int) - Method in class org.kepler.workflowscheduler.gui.ScheduleTableModel
Get the value of the cell at row and column.
getValueAt(int, int) - Method in class ptolemy.actor.gui.ArrayOfRecordsPane.ArrayAsTable
Get the specified entry as a String.
getValueByIndex(int) - Method in class org.kepler.plotting.Row
 
getValueClass() - Method in class ptolemy.data.ObjectToken
Return the class of the object contained in this token.
getValueClass() - Method in class ptolemy.data.type.ObjectType
Get the Java class specified in this type, of which the contents of ObjectTokens conforming to this type must be instances.
getValueFromName(ConfigurationProperty, String) - Static method in class org.kepler.util.StaticResources
get the value of a property based on the name
getValueList(List<ConfigurationProperty>, String, boolean) - Static method in class org.kepler.configuration.ConfigurationProperty
return a list of strings of the values of a property with a given name in the list of properties
getValues() - Method in class org.kepler.reporting.rio.Item
 
getValues() - Method in class ptolemy.math.Interpolation
Return the reference values.
getVariable(String) - Method in class ptolemy.data.expr.Variable
Look up and return the attribute with the specified name in the scope.
getVariable(String) - Method in class ptolemy.data.expr.Variable.VariableScope
Look up and return the attribute with the specified name in the scope.
getVariable() - Method in class ptolemy.moml.unit.UnitTerm
Get the element if it is a variable.
getVariables() - Method in class ptolemy.actor.util.ArrayElementTypeFunction
Return the type variables for this function, which is the type term of the specified typeable, unless it has a constant type, in which case return an empty array.
getVariables() - Method in class ptolemy.actor.util.ArrayOfTypesFunction
Return the type variables for this function, which is the type term of the specified typeable, unless it has a constant type, in which case return an empty array.
getVariables() - Method in class ptolemy.actor.util.ConstructAssociativeType
Return the type variables for this function, which are the type variables for all the ports that do not have declared types.
getVariables() - Method in class ptolemy.actor.util.ExtractFieldType
Return the type variables in this inequality term.
getVariables() - Method in class ptolemy.actor.util.GLBFunction
Return the type variables for this function, which are the type variables for all the destination ports.
getVariables() - Method in class ptolemy.data.type.MonotonicFunction
Return the type variables in this inequality term.
getVariables() - Method in class ptolemy.data.type.TypeConstant
Return an array of size zero.
getVariables() - Method in interface ptolemy.graph.InequalityTerm
Return an array of variables contained in this term.
getVariables() - Method in class ptolemy.graph.test.TestConstant
Return an array of size zero.
getVariables() - Method in class ptolemy.graph.test.TestVariable
Return an array of size one.
getVariablesWithChangeContext(NamedObj) - Method in class ptolemy.actor.util.ConstVariableModelAnalysis
Return the set of variables anywhere in the model that have the given container as least change context.
getVectorLength() - Method in class ptolemy.actor.IOPortEvent
Return the number of tokens in the array sent by the IOPort.
getVectorLength() - Method in class ptolemy.actor.TokenGotEvent
Deprecated.
Return the number of tokens in the array taken at the IOPort.
getVectorLength() - Method in class ptolemy.actor.TokenSentEvent
Deprecated.
Return the number of tokens in the array sent by the IOPort.
getVectors() - Method in class org.kepler.gis.data.VectorToken
Get the set of features represented in this token.
getVerboseString() - Method in class ptolemy.actor.util.ExtractFieldType
Return an additional string describing the current value of this function.
getVerboseString() - Method in class ptolemy.data.type.MonotonicFunction
Return an additional string describing the current value of this function.
getVersion() - Method in class org.kepler.kar.KARCached
 
getVersion() - Method in class org.kepler.kar.KARCacheError
 
getVersion() - Method in class ptolemy.kernel.util.Workspace
Get the version number.
getVersion() - Method in class ptolemy.vergil.actor.DocManager
Return the version field, or null if none has been given.
getVersion() - Method in class ptolemy.vergil.basic.KeplerDocumentationAttribute
Return the version.
getVersionString() - Method in class org.kepler.util.sql.DatabaseType
Get a string of the version from the version table.
getVersionString() - Method in class org.kepler.util.sql.Schema
Get the version string that includes the major and minor versions.
getVertexModel() - Method in class ptolemy.vergil.actor.ActorGraphModel
Get the vertex model.
getView() - Method in class org.kepler.reporting.rio.StaticReportItem
 
getView() - Method in class org.kepler.reporting.rio.StaticReportItemHR
 
getView() - Method in class org.kepler.reporting.rio.StaticReportItemImage
 
getView() - Method in class org.kepler.reporting.rio.StaticReportItemLabel
 
getView() - Method in class org.kepler.reporting.rio.StaticReportItemSection
 
getView() - Method in class org.kepler.reporting.rio.StaticReportItemText
 
getViewArea(TableauFrame) - Method in class org.kepler.gui.ViewManager
 
getViewComboBox(TableauFrame) - Method in class org.kepler.gui.ViewManager
Return a combo box that contains all of the views for the specified parent frame.
getViewName() - Method in class org.kepler.gui.ClassicViewPane
 
getViewName() - Method in class org.kepler.gui.DefaultViewPane
 
getViewName() - Method in class org.kepler.gui.DualVerticalViewPane
 
getViewName() - Method in class org.kepler.gui.SingleViewPane
 
getViewName() - Method in class org.kepler.gui.state.ViewStateChangeEvent
Get the value of the viewName for this event.
getViewName() - Method in interface org.kepler.gui.ViewPane
This method should return the name of the view which is used to label the view in the View selection list.
getViewPane(TableauFrame, String) - Method in class org.kepler.gui.ViewManager
Return a ViewPane reference for the given TableauFrame and viewName.
getViewSelector(TableauFrame) - Method in class org.kepler.gui.ViewManager
Method to return a JComponent as a view selector.
getVirtualBinNumber(Object) - Method in interface ptolemy.actor.util.CQComparator
Given an entry, return a virtual bin number for the entry.
getVirtualBinNumber(Object) - Method in class ptolemy.actor.util.test.DoubleCQComparator
Given an entry, a zero reference, and a bin width, return a virtual bin number for the entry.
getVirtualBinNumber(Object) - Method in class ptolemy.actor.util.TimedEvent.TimeComparator
Given an entry, return a virtual bin number for the entry.
getVisibility() - Method in class org.kepler.moml.DependencyAttribute
NamedObjIds should be invisible to the user
getVisibility() - Method in class org.kepler.moml.NamedObjId
NamedObjIds should be invisible to the user
getVisibility() - Method in class org.kepler.moml.PortAttribute
NamedObjIds should be invisible to the user
getVisibility() - Method in class org.kepler.sms.KeplerIOPortReference
Set visibility to NOT_EDITABLE
getVisibility() - Method in class org.kepler.sms.KeplerVirtualIOPortReference
Set visibility to NOT_EDITABLE
getVisibility() - Method in class org.kepler.sms.SemanticProperty
SemanticTypes should be invisible to the user
getVisibility() - Method in class org.kepler.sms.SemanticTypeDefinition
 
getVisibility() - Method in class ptolemy.actor.LocalClock
The LocalClock is not editable, thus visibility is always set to NOT_EDITABLE.
getVisibility() - Method in class ptolemy.data.expr.Variable
Get the visibility of this variable, as set by setVisibility().
getVisibility() - Method in class ptolemy.domains.modal.kernel.FSMTransitionParameter
Get visibility.
getVisibility() - Method in class ptolemy.kernel.util.ConfigurableAttribute
Get the visibility of this attribute, as set by setVisibility().
getVisibility() - Method in class ptolemy.kernel.util.Location
Get the visibility of this attribute, as set by setVisibility().
getVisibility() - Method in interface ptolemy.kernel.util.Settable
Get the visibility of this Settable, as set by setVisibility().
getVisibility() - Method in class ptolemy.kernel.util.StringAttribute
Get the visibility of this attribute, as set by setVisibility().
getVisibility() - Method in class ptolemy.moml.unit.UnitAttribute
Get the visibility of this attribute, as set by setVisibility().
getVisibility() - Method in class ptolemy.vergil.actor.LayoutHint
Get the visibility of this Settable, as set by setVisibility().
getVisibility() - Method in class ptolemy.vergil.actor.lib.MonitorReceiverAttribute
Get the visibility of this Settable, as set by setVisibility().
getVisibility() - Method in class ptolemy.vergil.kernel.attributes.AttributeValueAttribute
Get the visibility of this Settable, as set by setVisibility().
getVisibleCanvasRectangle() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Return the rectangle representing the visible part of the pane, transformed into canvas coordinates.
getVisibleRectangle() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Return the rectangle representing the visible part of the pane, in pixel coordinates on the screen.
getWaitingThread() - Method in class ptolemy.actor.Manager
Return a thread that is waiting and can be interrupted in the event that a change request is made, or null to indicate that there is no thread waiting.
getWarningMsg() - Method in class org.sdm.spa.actors.transport.FileCopierBase.CopyResult
 
getWebName() - Method in class ptolemy.vergil.basic.export.web.WebAttribute
Return the web name of this element; for example, "myElement" in <div name="myElement"> </div> in HTML.
getWebName() - Method in class ptolemy.vergil.basic.export.web.WebElement
Return the web name of this element; for example, "myElement" in <div name="myElement"/> in HTML.
getWeight() - Method in class ptolemy.graph.Element
Return the weight that has been associated with this element.
getWhere() - Method in class org.ecoinformatics.seek.querybuilder.DBQueryDef
A copy of the where object and all of its children.
getWidth() - Method in class com.jgoodies.forms.layout.FormLayout.LayoutInfo
Returns the layout's width, the size between the first and the last column origin.
getWidth() - Method in class ptolemy.actor.IOPort
Return the width of the port.
getWidth() - Method in class ptolemy.actor.IORelation
Return the width of the IORelation, which is always at least one.
getWidthFromConstraints() - Method in class ptolemy.actor.IOPort
Get the width from the constraints put on the width of this port if the width is fully determined.
getWidthInside() - Method in class ptolemy.actor.IOPort
Return the inside width of this port.
getWidthInside() - Method in class ptolemy.actor.SubscriptionAggregatorPort
Return the inside width of this port, which in this class is always 1.
getWildcardFileListing(String, String) - Method in class org.kepler.ssh.SftpExec
Anand: Receives the remote wildcard and returns list of files matching the pattern
getwildcardFileListingBBCP(String, String) - Method in class org.kepler.ssh.SshExec
 
getWindowId() - Method in class org.kepler.tagging.TaggingContextManager
 
getWorkbenchContext() - Method in class org.kepler.gis.display.JumpMapTab
Gets the workbenchContext attribute of the JumpMapTab object
getWorkdirPath() - Method in class org.kepler.job.Job
 
getWorkflow(TableauFrame, KeplerLSID) - Method in class org.kepler.workflow.WorkflowManager
 
getWorkflowForExecution(Integer) - Method in class org.kepler.provenance.DefaultQuery
Get the workflow object for a execution id.
getWorkflowForExecution(Integer) - Method in interface org.kepler.provenance.Queryable
Get the workflow object for a execution id.
getWorkflowId() - Method in class org.kepler.workflowscheduler.gui.Schedule
Get the workflow id associated with this schedule
getWorkflowId() - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerPanel
Get the id of the workflow (LSID format)
getWorkflowJobName() - Method in class org.kepler.workflowscheduler.gui.Schedule
Get the workflow job name.
getWorkflowLocation() - Method in class org.kepler.workflowscheduler.gui.Schedule
Get the workflow location repository
getWorkflowLSID() - Method in class org.kepler.objectmanager.cache.CacheNamedObj
 
getWorkflowLSID() - Method in class org.kepler.objectmanager.repository.EcogridRepositoryLibrarySearcher.NondraggableTreeItem
 
getWorkflowLSID() - Method in class org.kepler.reporting.roml.ReportLayout
 
getWorkflowLSID() - Method in class org.kepler.util.WorkflowRun
Return the LSID of the workflow that this WorkflowRun was generated from.
getWorkflowLSID() - Method in class org.kepler.workflowscheduler.gui.LocalRemoteWorkflowMap
 
getWorkflowName() - Method in class org.kepler.kar.karxml.KarXml.KarEntry
 
getWorkflowName() - Method in class org.kepler.objectmanager.cache.CacheNamedObj
 
getWorkflowName() - Method in class org.kepler.objectmanager.repository.EcogridRepositoryLibrarySearcher.NondraggableTreeItem
 
getWorkflowName(KeplerLSID) - Method in class org.kepler.provenance.DefaultQuery
 
getWorkflowName(KeplerLSID) - Method in interface org.kepler.provenance.Queryable
Get a workflow name.
getWorkflowName(KeplerLSID) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get a workflow name.
getWorkflowName() - Method in class org.kepler.util.WorkflowRun
Return the name of the workflow that this run was generated from.
getWorkflowName() - Method in class org.kepler.workflowscheduler.gui.LocalRemoteWorkflowMap
 
getWorkflowName() - Method in class org.kepler.workflowscheduler.gui.Schedule
Get the workflow name associated with the schedule
getWorkflowName() - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerPanel
Get the name of the workflow
getWorkflowNameForExecution(KeplerLSID) - Method in class org.kepler.provenance.DefaultQuery
 
getWorkflowNameForExecution(KeplerLSID) - Method in interface org.kepler.provenance.Queryable
Get a workflow name for an execution LSID.
getWorkflowNameForExecution(KeplerLSID) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get a workflow name for an execution LSID.
getWorkflowRunDestination() - Method in class org.kepler.workflowscheduler.gui.Schedule
Get the destination repository which will store the workflwo run
getWorkflowRunEngine() - Method in class org.kepler.workflowscheduler.gui.Schedule
Get the workflow run engine which will run the workflow
getWorkflowRunEngineList() - Static method in class org.kepler.module.workflowschedulergui.Initialize
Get the list of workflow run engine.
getWorkflowRunForRow(int) - Method in class org.kepler.workflowrunmanager.gui.WorkflowRunManagerTableModel
get workflowRun for row
getWorkflowRunManagerRecording() - Method in class org.kepler.workflowrunmanager.WorkflowRunManager
 
getWorkflowRuns() - Method in class org.kepler.workflowrunmanager.WorkflowRunManager
 
getWorkflowRunsForExecutionLSIDs(List<KeplerLSID>) - Method in class org.kepler.provenance.DefaultQuery
 
getWorkflowRunsForExecutionLSIDs(List<KeplerLSID>) - Method in interface org.kepler.provenance.Queryable
Get "workflow runs" for a list of execution LSIDs.
getWorkflowRunsForExecutionLSIDs(List<KeplerLSID>) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get WorkflowRuns for a list of execution LSIDs
getWorkflowRunsForRows(int[]) - Method in class org.kepler.workflowrunmanager.gui.WorkflowRunManagerTableModel
get workflowRun(s) for rows
getWorkflowRunsForUser(String) - Method in class org.kepler.provenance.DefaultQuery
Get workflow runs for a user.
getWorkflowRunsForUser(String) - Method in interface org.kepler.provenance.Queryable
Get workflow runs for a user.
getWorkflowRunsForUser(String) - Method in class org.kepler.provenance.sql.SQLQueryV8
 
getWorkflowRunsForWorkflow(KeplerLSID) - Method in class org.kepler.workflowrunmanager.WorkflowRunManager
Return runs from the list in memory that are associated with particular workflow.
getWorkflows() - Method in class org.kepler.provenance.DefaultQuery
 
getWorkflows() - Method in interface org.kepler.provenance.Queryable
Get a list of workflow names.
getWorkflows() - Method in class org.kepler.provenance.sql.SQLQueryV8
Get a list of workflow names.
getWorkflowSemanticTypes() - Method in class org.kepler.util.WorkflowRun
 
getWritableFile() - Method in class ptolemy.actor.gui.Effigy
Return a writable file for the URI given by the uri parameter of this effigy, if there is one, or return null if there is not.
getWriteAccess - Variable in class ptolemy.kernel.util.test.TestWorkspace2.Notification
 
getWriteAccess() - Method in class ptolemy.kernel.util.Workspace
Obtain permission to write to objects in the workspace.
getWRM(TableauFrame) - Method in class org.kepler.workflowrunmanager.WorkflowRunManagerManager
 
getWRM(TableauFrame, ProvenanceStore) - Method in class org.kepler.workflowrunmanager.WorkflowRunManagerManager
 
getWsdlURL() - Method in class org.ecoinformatics.seek.ecogrid.EcoGridService
Get wsdl url for this service
getX() - Method in class com.jgoodies.forms.layout.FormLayout.LayoutInfo
Returns the layout's horizontal origin, the origin of the first column.
getX() - Method in class ptolemy.vergil.actor.PortConnectSite
Get the horizontal position of this site with the normal that was set up by the constructor.
getX() - Method in class ptolemy.vergil.toolbox.FigureAction
Return the horizontal position of the action, or 0 if this is not relevant (e.g., the action was triggered by a toolbar button).
getX() - Method in class ptolemy.vergil.toolbox.PortSite
Get the x-coordinate of the site.
getXAutoRange() - Method in class ptolemy.plot.PlotBox
Get the range for X values of the data points registered so far.
getXAutoRange() - Method in interface ptolemy.plot.PlotBoxInterface
Get the range for X values of the data points registered so far.
getXLabel() - Method in class ptolemy.plot.PlotBox
Get the label for the X (horizontal) axis, or null if none has been set.
getXLabel() - Method in interface ptolemy.plot.PlotBoxInterface
Get the label for the X (horizontal) axis, or null if none has been set.
getXLog() - Method in class ptolemy.plot.PlotBox
Return whether the X axis is drawn with a logarithmic scale.
getXLog() - Method in interface ptolemy.plot.PlotBoxInterface
Return whether the X axis is drawn with a logarithmic scale.
getXmax() - Method in class org.geon.LidarJobConfig
 
getXmin() - Method in class org.geon.LidarJobConfig
 
getXML() - Method in class org.kepler.configuration.ConfigurationProperty
return the xml version of this property
getXml() - Method in class org.kepler.hadoop.util.DDPPatternActorUtil
 
getXml() - Method in class org.kepler.kar.karxml.KarXml.KarEntry
 
getXML() - Method in class org.mlc.swing.layout.LayoutConstraintsManager
Get an XML representation of the FormLayout constraints for all containers in this manager.
getXMLFiles() - Method in class org.kepler.objectmanager.cache.LocalRepositoryManager
Return a list of all the XML files that were found after calling scanReposForXMLFiles()
getXMLIcon(NamedObj, String) - Static method in class ptolemy.vergil.icon.XMLIcon
Instantiate an XMLIcon in a NamedObj.
getXMLIcon(Workspace, String) - Static method in class ptolemy.vergil.icon.XMLIcon
Instantiate an XMLIcon in a Workspace.
getXPath() - Method in class org.ecoinformatics.seek.ecogrid.RegistrySearchDialog
Method to get the selected xpath in combobox.
getXPath(String) - Method in class org.ecoinformatics.seek.ecogrid.RegistrySearchDialog
This method will retrun a xpath for optionLabel.
getXRange() - Method in class ptolemy.plot.PlotBox
Get the X range.
getXRange() - Method in interface ptolemy.plot.PlotBoxInterface
Get the X range.
getXTicks() - Method in class ptolemy.plot.PlotBox
Get the X ticks that have been specified, or null if none.
getXTicks() - Method in interface ptolemy.plot.PlotBoxInterface
Get the X ticks that have been specified, or null if none.
getXYPlot() - Method in class org.kepler.plotting.Plot
 
getY() - Method in class com.jgoodies.forms.layout.FormLayout.LayoutInfo
Returns the layout's vertical origin, the origin of the first row.
getY() - Method in class ptolemy.vergil.actor.PortConnectSite
Get the vertical position of this site with the normal that was set up by the constructor.
getY() - Method in class ptolemy.vergil.toolbox.FigureAction
Return the vertical position of the action, or 0 if this is not relevant (e.g., the action was triggered by a toolbar button).
getY() - Method in class ptolemy.vergil.toolbox.PortSite
Get the y-coordinate of the site.
getYAutoRange() - Method in class ptolemy.plot.PlotBox
Get the range for Y values of the data points registered so far.
getYAutoRange() - Method in interface ptolemy.plot.PlotBoxInterface
Get the range for Y values of the data points registered so far.
getYear() - Method in class ptolemy.data.DateToken
Get the year of this date.
getYLabel() - Method in class ptolemy.plot.PlotBox
Get the label for the Y (vertical) axis, or null if none has been set.
getYLabel() - Method in interface ptolemy.plot.PlotBoxInterface
Get the label for the Y (vertical) axis, or null if none has been set.
getYLog() - Method in class ptolemy.plot.PlotBox
Return whether the Y axis is drawn with a logarithmic scale.
getYLog() - Method in interface ptolemy.plot.PlotBoxInterface
Return whether the Y axis is drawn with a logarithmic scale.
getYmax() - Method in class org.geon.LidarJobConfig
 
getYmin() - Method in class org.geon.LidarJobConfig
 
getYRange() - Method in class ptolemy.plot.PlotBox
Get the Y range.
getYRange() - Method in interface ptolemy.plot.PlotBoxInterface
Get the Y range.
getYTicks() - Method in class ptolemy.plot.PlotBox
Get the Y ticks that have been specified, or null if none.
getYTicks() - Method in interface ptolemy.plot.PlotBoxInterface
Get the Y ticks that have been specified, or null if none.
getZrTid100Srd2DiagraminSVG() - Static method in class org.geon.TernaryDiagram
 
getZrTid100Y3DiagraminSVG() - Static method in class org.geon.TernaryDiagram
 
GIS - Static variable in class org.kepler.gis.data.GISToken
The GIS type.
GISBufferActor - Class in org.ecoinformatics.seek.gis.grass
 
GISBufferActor(CompositeEntity, String) - Constructor for class org.ecoinformatics.seek.gis.grass.GISBufferActor
his actor takes a raster grid and assigns a 'buffed regoin around the cells with values of 1.
GISClassChanges - Class in org.kepler.moml.filter
This class updates Ptolemy's ClassChanges MoML filter with GIS classes that have been renamed or deleted.
gisdbase - Variable in class org.ecoinformatics.seek.gis.grass.GrassExportActor
 
gisdbase - Variable in class org.ecoinformatics.seek.gis.grass.GrassImportActor
 
GISHullActor - Class in org.ecoinformatics.seek.gis.grass
The purpose of this actor is to take a set of (x, y) points and return the points that define the convex hull around the input.
GISHullActor(CompositeEntity, String) - Constructor for class org.ecoinformatics.seek.gis.grass.GISHullActor
 
GISHullActorJ - Class in org.ecoinformatics.seek.gis.java_gis
The purpose of this actor is to take a set of (x, y) points and return the points that define the convex hull around the input.
GISHullActorJ(CompositeEntity, String) - Constructor for class org.ecoinformatics.seek.gis.java_gis.GISHullActorJ
 
GISPropertyClassChanges - Class in org.kepler.moml.filter
This class updates Ptolemy's PropertyClassChanges MoML filter with Kepler GIS actors that have property class changes.
GISRasterActor - Class in org.ecoinformatics.seek.gis.grass
This actor crease a spatial raster grid usng the ConvexHull polygon.
GISRasterActor(CompositeEntity, String) - Constructor for class org.ecoinformatics.seek.gis.grass.GISRasterActor
 
gisrc - Variable in class org.ecoinformatics.seek.gis.grass.GrassExportActor
 
gisrc - Variable in class org.ecoinformatics.seek.gis.grass.GrassImportActor
 
GISToken - Class in org.kepler.gis.data
Token containing GIS data.
GISToken() - Constructor for class org.kepler.gis.data.GISToken
 
GISToken.GISType - Class in org.kepler.gis.data
 
GISType() - Constructor for class org.kepler.gis.data.GISToken.GISType
 
GISUtilities - Class in org.kepler.gis.util
Misc.
GISWriter - Class in org.kepler.gis.actor.io
Base class actor for writing GIS data sets.
GISWriter(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.io.GISWriter
Create a new GISWriter in a container with the specified name.
GLBFunction - Class in ptolemy.actor.util
This class implements a monotonic function that returns the greatest lower bound (GLB) of its arguments.
GLBFunction(TypedIOPort) - Constructor for class ptolemy.actor.util.GLBFunction
Construct a GLBFunction that finds the greatest lower bound of the type variable of the destination ports connected to the TypedIOPort that is given as an argument.
global - Variable in class ptolemy.actor.lib.Publisher
Specification of whether the published data is global.
global - Variable in class ptolemy.actor.lib.Subscriber
Specification of whether the data is subscribed globally.
global - Variable in class ptolemy.actor.PubSubPort
Specification of whether the published data is global.
globalMetadataPortName - Static variable in class org.kepler.dataproxy.datasource.opendap.OpendapDataSource
 
globalTimeResolution - Variable in class ptolemy.actor.LocalClock
The time precision used by this director.
GLUE_COLSPEC - Static variable in class com.jgoodies.forms.factories.FormFactory
An unmodifyable ColumnSpec that has an initial width of 0 pixels and that grows.
GLUE_ROWSPEC - Static variable in class com.jgoodies.forms.factories.FormFactory
An unmodifyable RowSpec that has an initial height of 0 pixels and that grows.
GMLStringPort - Variable in class org.kepler.gis.display.JumpGMLDisplayer
Description of the Field
go() - Method in class ptolemy.actor.test.ManagerLeak
 
gotRowVectorFromSource() - Method in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource
This method will read a row vector from data source, either from resultset which excuted by data query or delimiterdReader which reader from data inputtream - _reader.
GradientAdaptiveLattice - Class in ptolemy.actor.lib
An adaptive FIR filter with a lattice structure.
GradientAdaptiveLattice(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.GradientAdaptiveLattice
Construct an actor with the given container and name.
granularity - Variable in class org.kepler.date.DateDifference
Specifies the granularity of difference between dates, e.g., hours, days, months, etc.
granularity - Variable in class ptolemy.actor.lib.ExecutionTime
The granularity of the computation.
graph() - Method in class ptolemy.graph.analysis.Analysis
The graph associated with the analysis.
graph() - Method in interface ptolemy.graph.analysis.analyzer.GraphAnalyzer
Return the graph associated with this analyzer.
graph() - Method in class ptolemy.graph.analysis.strategy.CachedStrategy
The graph associated with the Strategy.
Graph - Class in ptolemy.graph
A graph with optionally-weighted nodes and edges.
Graph() - Constructor for class ptolemy.graph.Graph
Construct an empty graph.
Graph(int) - Constructor for class ptolemy.graph.Graph
Construct an empty graph with enough storage allocated for the specified number of nodes.
Graph(int, int) - Constructor for class ptolemy.graph.Graph
Construct an empty graph with enough storage allocated for the specified number of edges, and number of nodes.
GraphActionException - Exception in ptolemy.graph
Exception for graph action errors.
GraphActionException(String) - Constructor for exception ptolemy.graph.GraphActionException
Constructor with an argument of text description.
GraphActionException(Throwable, String) - Constructor for exception ptolemy.graph.GraphActionException
Constructor with an argument of text description.
GraphAnalyzer - Interface in ptolemy.graph.analysis.analyzer
A base interface for all the graph analyzers.
GraphConstructionException - Exception in ptolemy.graph
The exception of modifying graph elements in wrong ways.
GraphConstructionException(String) - Constructor for exception ptolemy.graph.GraphConstructionException
Constructor with an argument of text description.
graphDump(Graph) - Static method in exception ptolemy.graph.GraphException
Return a dump of this graph suitable to be appended to an error message.
GraphElementException - Exception in ptolemy.graph
The exception of accessing graph elements in wrong ways.
GraphElementException(String) - Constructor for exception ptolemy.graph.GraphElementException
Constructor for a given message.
GraphElementException(Element, Graph, String) - Constructor for exception ptolemy.graph.GraphElementException
Constructor with arguments of element, graph, and a message.
GraphException - Exception in ptolemy.graph
Base exception for graph errors.
GraphException() - Constructor for exception ptolemy.graph.GraphException
The default constructor without arguments.
GraphException(String) - Constructor for exception ptolemy.graph.GraphException
Constructor with an argument of text description.
graphHeight - Variable in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Parameter specifying the height of the figure.
GraphicalActorMetadata - Class in org.kepler.gui
 
GraphicalActorMetadata(InputStream) - Constructor for class org.kepler.gui.GraphicalActorMetadata
Constructor.
GraphicalActorMetadata(NamedObj) - Constructor for class org.kepler.gui.GraphicalActorMetadata
builds a new ActorMetadata object from an existing NamedObj
GraphicalActorMetadata(ActorMetadata) - Constructor for class org.kepler.gui.GraphicalActorMetadata
add the graphical handlers to the actormetadata object
GraphicalMessageHandler - Class in ptolemy.gui
This is a message handler that reports errors in a graphical dialog box.
GraphicalMessageHandler() - Constructor for class ptolemy.gui.GraphicalMessageHandler
 
GraphicalMessageHandlerApplet - Class in ptolemy.gui.test
An applet that bring up a toplevel, standalone Vergil frame.
GraphicalMessageHandlerApplet() - Constructor for class ptolemy.gui.test.GraphicalMessageHandlerApplet
 
GraphicElement - Class in ptolemy.vergil.toolbox
An GraphicElement is an atomic piece of a graphical representation.
GraphicElement(String) - Constructor for class ptolemy.vergil.toolbox.GraphicElement
Create a new GraphicElement with the given type.
graphicsFileName - Variable in class org.ecoinformatics.seek.R.RExpression
The name of the default graphics output file created by the actor
graphicsFileName - Variable in class org.ecoinformatics.seek.R.RExpression2
The name of the default graphics output file created by the actor
graphicsFileName - Variable in class ptolemy.actor.lib.r.RExpression
The name of the default graphics output file created by the actor.
graphicsFileName - Variable in class ptolemy.actor.lib.r.RExpression2
The name of the default graphics output file created by the actor.
graphicsFormat - Variable in class org.ecoinformatics.seek.R.RExpression
The graphics output format.
graphicsFormat - Variable in class org.ecoinformatics.seek.R.RExpression2
The graphics output format.
graphicsFormat - Variable in class ptolemy.actor.lib.r.RExpression
The graphics output format.
graphicsFormat - Variable in class ptolemy.actor.lib.r.RExpression2
The graphics output format.
graphicsOutput - Variable in class org.ecoinformatics.seek.R.RExpression
If true, then create a graphics output port.
graphicsOutput - Variable in class org.ecoinformatics.seek.R.RExpression2
If true, then create a graphics output port.
graphicsOutput - Variable in class ptolemy.actor.lib.r.RExpression
If true, then create a graphics output port.
graphicsOutput - Variable in class ptolemy.actor.lib.r.RExpression2
If true, then create a graphics output port.
graphicsOutputFile - Variable in class org.ecoinformatics.seek.R.RExpression
 
GraphInvalidStateException - Exception in ptolemy.graph
Exception for graph invalid state action errors.
GraphInvalidStateException(String) - Constructor for exception ptolemy.graph.GraphInvalidStateException
Construct an exception with a detail message.
GraphInvalidStateException(Throwable, String) - Constructor for exception ptolemy.graph.GraphInvalidStateException
Construct an exception with a detail message that includes the name of the first argument, the cause and the third argument string.
GraphLabelsPanel - Class in org.kepler.plotting
Created by IntelliJ IDEA.
GraphLabelsPanel(PlotEditor) - Constructor for class org.kepler.plotting.GraphLabelsPanel
 
GraphProperty - Enum in org.kepler.plotting
Created by IntelliJ IDEA.
GraphReader - Class in ptolemy.actor
This class provides methods for converting Ptolemy II models into generic graph representations.
GraphReader() - Constructor for class ptolemy.actor.GraphReader
Construct a new graph reader.
GraphStateException - Exception in ptolemy.graph
The exception of computing a function of graph with wrong states.
GraphStateException(String) - Constructor for exception ptolemy.graph.GraphStateException
Constructor with an argument of text description.
GraphTopologyException - Exception in ptolemy.graph
The exception thrown due to incorrect graph topology.
GraphTopologyException(String) - Constructor for exception ptolemy.graph.GraphTopologyException
Constructor with an argument of text description.
GraphWeightException - Exception in ptolemy.graph
Exception for unweighted graphs or graphs with improper weights.
GraphWeightException(String) - Constructor for exception ptolemy.graph.GraphWeightException
Constructor for a given message.
GraphWeightException(Object, Element, Graph, String) - Constructor for exception ptolemy.graph.GraphWeightException
Constructor with arguments of weight, element, graph, and a message.
graphWidth - Variable in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Parameter specifying the width of the figure.
grass_gisbase - Variable in class org.ecoinformatics.seek.gis.grass.GrassExportActor
 
grass_gisbase - Variable in class org.ecoinformatics.seek.gis.grass.GrassImportActor
 
GrassExportActor - Class in org.ecoinformatics.seek.gis.grass
This actor exports a GRASS database object into an ARC file.
GrassExportActor(CompositeEntity, String) - Constructor for class org.ecoinformatics.seek.gis.grass.GrassExportActor
Grass Export Actor.
GrassImportActor - Class in org.ecoinformatics.seek.gis.grass
This actor imports an ARC file into the GRASS database. it does not produce any tangible output, rather it just writes the info the the GRASS DB and fires a trigger to say that it's done.
GrassImportActor(CompositeEntity, String) - Constructor for class org.ecoinformatics.seek.gis.grass.GrassImportActor
Grass Import Actor. imports an arc file into the grass database.
GRColorChanges - Class in ptolemy.moml.filter
This class filters MoML files for backward compatibility between GR models constructed in version 4.0 or earlier.
GRColorChanges() - Constructor for class ptolemy.moml.filter.GRColorChanges
 
GREATER_THAN - Static variable in interface ptolemy.actor.util.Dependency
Return value of compareTo() if this is greater than the argument.
GREATER_THAN - Static variable in class ptolemy.domains.modal.kernel.RelationType
Relation type a relation node that is evaluated to be false and the left token is greater than the right token, while the relation operation is not equal or inequal.
greaterThan(Fraction) - Method in class ptolemy.math.Fraction
Test if this Fraction is greater than the input.
greatestElement(Set<T>) - Method in interface ptolemy.graph.CPO
Compute the greatest element of a subset.
greatestElement(Set<Object>) - Method in class ptolemy.graph.DirectedAcyclicGraph
Compute the greatest element of a subset.
greatestLowerBound(Object, Object) - Method in interface ptolemy.graph.CPO
Compute the greatest lower bound (GLB) of two elements.
greatestLowerBound(Set<T>) - Method in interface ptolemy.graph.CPO
Compute the greatest lower bound (GLB) of a subset.
greatestLowerBound(Object, Object) - Method in class ptolemy.graph.DirectedAcyclicGraph
Compute the greatest lower bound (GLB) of two elements.
greatestLowerBound(Set<Object>) - Method in class ptolemy.graph.DirectedAcyclicGraph
Compute the greatest lower bound (GLB) of a subset.
Grid - Class in org.ecoinformatics.seek.gis.java_gis
 
Grid() - Constructor for class org.ecoinformatics.seek.gis.java_gis.Grid
 
Grid(int, int, double, double, double, double) - Constructor for class org.ecoinformatics.seek.gis.java_gis.Grid
 
Grid(File) - Constructor for class org.ecoinformatics.seek.gis.java_gis.Grid
 
Grid(File, boolean) - Constructor for class org.ecoinformatics.seek.gis.java_gis.Grid
 
grid1FileName - Variable in class org.ecoinformatics.seek.gis.java_gis.MergeGrids
The first grid file (*.asc format) to be merged
grid2FileName - Variable in class org.ecoinformatics.seek.gis.java_gis.MergeGrids
The second grid file (*.asc format) to be merged
gridArrayPrefix - Static variable in class org.kepler.dataproxy.datasource.opendap.TypeMapper
Name prefix for The primary data array in a grid.
gridcert - Variable in class org.kepler.actor.ssh.SshSession
The string representation of the file path for the Grid Certificate file if the user wants to connect to an GSI-SSH server without having to enter the password all the time (the passphrase for the certificate will be asked once).
gridContents - Variable in class com.numericsolutions.geomodeltools.DensityGridActor
 
gridDensityByArray(String[], String[], float) - Static method in class com.numericsolutions.geomodeltools.GeomodelGlue
function in the nsgrid.cpp code
gridDensityByArrayDimension(String[], float, float, float, float, float, float, float, float) - Static method in class com.numericsolutions.geomodeltools.GeomodelGlue
 
gridFilenameArrayPort - Variable in class org.ecoinformatics.seek.gis.java_gis.AddGrids
A string array of filenames of grid files to be added
gridHeight - Variable in class com.jgoodies.forms.layout.CellConstraints
Describes the component's vertical grid extent (number of cells).
gridMapPrefix - Static variable in class org.kepler.dataproxy.datasource.opendap.TypeMapper
Name refix for a map vector in a grid.
GridOverlay - Class in org.geon
A template actor used in Gravity modeling design workflow.
GridOverlay(CompositeEntity, String) - Constructor for class org.geon.GridOverlay
 
gridproxy - Variable in class org.kepler.actor.ssh.SshSession
The string representation of the file path for the Grid Certificate Proxy file if the user wants to connect to an GSI-SSH server without having to enter the password all the time.
GridRescaler - Class in org.ecoinformatics.seek.gis.java_gis
This actor converts an ascii raster grid file into another ascii grid file with different extent and cell spacing A ASC grid file is read as input.
GridRescaler(CompositeEntity, String) - Constructor for class org.ecoinformatics.seek.gis.java_gis.GridRescaler
constructor
GridReset - Class in org.ecoinformatics.seek.gis.java_gis
This actor is for transforming some range of values in a grid to some other value.
GridReset(CompositeEntity, String) - Constructor for class org.ecoinformatics.seek.gis.java_gis.GridReset
constructor
gridWidth - Variable in class com.jgoodies.forms.layout.CellConstraints
Describes the component's horizontal grid extend (number of cells).
gridX - Variable in class com.jgoodies.forms.layout.CellConstraints
Describes the component's horizontal grid origin (starts at 1).
gridY - Variable in class com.jgoodies.forms.layout.CellConstraints
Describes the component's vertical grid origin (starts at 1).
Groovy - Class in org.kepler.scriptengine
An actor whose execution is defined by a Groovy script.
Groovy(Workspace) - Constructor for class org.kepler.scriptengine.Groovy
Construct a new Groovy for a specified workspace.
Groovy(CompositeEntity, String) - Constructor for class org.kepler.scriptengine.Groovy
Construct a new Groovy with the given container and name.
GroupableTableCellRenderer - Class in org.kepler.workflowrunmanager.gui
ColumnGroup, GroupableTableColumnModel, GroupableTableHeader, GroupableTableHeaderUI and GroupableTableCellRenderer taken from a post by Steve Webb (16/09/04).
GroupableTableCellRenderer() - Constructor for class org.kepler.workflowrunmanager.gui.GroupableTableCellRenderer
 
GroupableTableColumnModel - Class in org.kepler.workflowrunmanager.gui
Class which extends the functionality of DefaultColumnTableModel to also provide capabilities to group columns.
GroupableTableColumnModel() - Constructor for class org.kepler.workflowrunmanager.gui.GroupableTableColumnModel
 
GroupableTableHeader - Class in org.kepler.workflowrunmanager.gui
This is the object which manages the header of the JTable and also provides functionality for groupable headers.
GroupableTableHeader(GroupableTableColumnModel) - Constructor for class org.kepler.workflowrunmanager.gui.GroupableTableHeader
Constructs a GroupableTableHeader which is initialized with cm as the column model.
GroupableTableHeaderUI - Class in org.kepler.workflowrunmanager.gui
This class paints groupable header cells.
GroupableTableHeaderUI() - Constructor for class org.kepler.workflowrunmanager.gui.GroupableTableHeaderUI
 
GroupableTableHeaderUI.MouseInputHandler - Class in org.kepler.workflowrunmanager.gui
 
groupingComparatorClass - Variable in class org.kepler.ddp.actor.pattern.Reduce
The name of the GroupingComparatorClass, used only in hadoop for group input data of reducers.
groupNameProperty - Variable in class org.kepler.gis.actor.kml.KMLWriter
The name of the property specifying the group name.
GROW - Static variable in class ptolemy.math.Overflow
Singleton implementing Grow overflow strategy.
GROWING_BUTTON_COLSPEC - Static variable in class com.jgoodies.forms.factories.FormFactory
Describes a logical horizontal column for a growing button.
GsiSshExec - Class in org.kepler.ssh
This class provides functionality to use an GSISSH session to execute remote commands and to transfer files on a remote machine.
GsiSshExec(String, String) - Constructor for class org.kepler.ssh.GsiSshExec
 
GsiSshExec(String, String, int) - Constructor for class org.kepler.ssh.GsiSshExec
 
GsiSshExec(String) - Constructor for class org.kepler.ssh.GsiSshExec
 
GsiSshSessionFactory - Class in org.kepler.ssh
This class provides a factory to store gsi ssh sessions.
GT - Static variable in class org.camera.service.ServiceUtils
 
GT - Static variable in class org.json.XML
The Character '>'.
GT - Static variable in class org.kepler.actor.rest.ServiceUtils
 
GT - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
GT_INX - Static variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIStd
 
GTE - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
guardExpression - Variable in class ptolemy.domains.modal.kernel.Transition
Attribute specifying the guard expression.
guessSamplingRate(Vector<Object>) - Method in class org.kepler.data.datasource.dataturbine.DataTurbine
 
GUIAction - Class in ptolemy.actor.gui.properties
A helper class to handle actions in GUI properties.
GUIAction(NamedObj, String) - Constructor for class ptolemy.actor.gui.properties.GUIAction
Construct an item with the given name contained by the specified entity.
GuiClass - Class in org.kepler.tagging.gui
Created by IntelliJ IDEA.
GuiClass() - Constructor for class org.kepler.tagging.gui.GuiClass
 
GUIProperty - Class in ptolemy.actor.gui.properties
Base class for the properties that can be used to configure a tableau.
GUIProperty(NamedObj, String) - Constructor for class ptolemy.actor.gui.properties.GUIProperty
Construct a GUI property with the given name contained by the specified entity.
GUIProperty(NamedObj, String, JComponent) - Constructor for class ptolemy.actor.gui.properties.GUIProperty
Construct a GUI property with the given name contained by the specified entity with the given Java Swing component.
GUIProperty(NamedObj, String, JComponent, Object) - Constructor for class ptolemy.actor.gui.properties.GUIProperty
Construct a GUI property with the given name contained by the specified entity with the given Java Swing component and the given layout constraint.
GUIProperty(NamedObj, String, Object) - Constructor for class ptolemy.actor.gui.properties.GUIProperty
Construct a GUI property with the given name contained by the specified entity with the given layout constraint.
GUIReportItemManager - Class in org.kepler.reporting.rio
 
GUIReportItemManager() - Constructor for class org.kepler.reporting.rio.GUIReportItemManager
 
GUIRunCIPRes - Class in org.cipres.kepler
This actor calls external Cipres applications with GUIGen interfaces.
GUIRunCIPRes(CompositeEntity, String) - Constructor for class org.cipres.kepler.GUIRunCIPRes
Construct GUIRunCIPRes source with the given container and name.
GUIUtil - Class in org.kepler.gui
A class to hold useful GUI utility methods.
GUIUtil() - Constructor for class org.kepler.gui.GUIUtil
 
GZIP - Static variable in class org.kepler.objectmanager.data.db.Entity
 

H

HadamardCode - Class in ptolemy.actor.lib.comm
Produce a Hadamard codeword by selecting a row from a Hadamard matrix.
HadamardCode(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.comm.HadamardCode
Construct an actor with the given container and name.
hadError - Variable in class org.sdm.spa.WSWithComplexTypes
Outputs true if error was ignored invoking method.
hadException() - Method in class ptolemy.vergil.actor.DocManager
Return true if an exception was encountered parsing the DocML data.
HadoopDirector - Class in org.kepler.hadoop.director
A DDP director that uses the Hadoop engine to convert DDP pattern actors (Map, Reduce, Cross, CoGroup, and Match) and I/O actors (DDPDataSink and DDPDataSource) into a Hadoop job and runs it on the server.
HadoopDirector(CompositeEntity, String) - Constructor for class org.kepler.hadoop.director.HadoopDirector
Create a new HadoopDirector in a container with a specific name.
HadoopDirector(Workspace) - Constructor for class org.kepler.hadoop.director.HadoopDirector
Create a new HadoopDirector for a workspace.
HadoopEngine - Class in org.kepler.hadoop.director
An engine than runs workflows in Hadoop.
HadoopEngine(DDPDirector) - Constructor for class org.kepler.hadoop.director.HadoopEngine
 
HALF_CEILING - Static variable in class ptolemy.math.Rounding
Singleton implementing half ceiling rounding strategy.
HALF_DOWN - Static variable in class ptolemy.math.Rounding
Singleton implementing half down rounding strategy.
HALF_EVEN - Static variable in class ptolemy.math.Rounding
Singleton implementing half even rounding strategy.
HALF_FLOOR - Static variable in class ptolemy.math.Rounding
Singleton implementing half floor rounding strategy.
HALF_UP - Static variable in class ptolemy.math.Rounding
Singleton implementing half up rounding strategy.
hAlign - Variable in class com.jgoodies.forms.layout.CellConstraints
Describes the component's horizontal alignment.
HammingCoder - Class in ptolemy.actor.lib.comm
Encode the information symbols into Hamming code.
HammingCoder(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.comm.HammingCoder
Construct an actor with the given container and name.
HammingDecoder - Class in ptolemy.actor.lib.comm
Decode a (n, k) Hamming code, where n is specified by parameter codedRate and k is specified by parameter uncodedRate.
HammingDecoder(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.comm.HammingDecoder
Construct an actor with the given container and name.
handle(RoutingContext) - Method in class org.kepler.webview.server.auth.WebViewAuthHandlerImpl
 
handle(RoutingContext) - Method in class org.kepler.webview.server.handler.ActorHandler
 
handle(RoutingContext) - Method in class org.kepler.webview.server.handler.BaseHandler
Do nothing.
handle(RoutingContext) - Method in class org.kepler.webview.server.handler.LoginHandler
 
handle(RoutingContext) - Method in class org.kepler.webview.server.handler.NoMatchHandler
 
handle(RoutingContext) - Method in class org.kepler.webview.server.handler.RunIdHandler
 
handle(RoutingContext) - Method in class org.kepler.webview.server.handler.RunsHandler
 
handle(RoutingContext) - Method in class org.kepler.webview.server.handler.TableOfContentsHandler
 
handle(ServerWebSocket) - Method in class org.kepler.webview.server.handler.WebSocketServerBaseHandler
 
handle(RoutingContext) - Method in class org.kepler.webview.server.handler.WorkflowHandler
 
handle(ServerWebSocket) - Method in class org.kepler.webview.server.handler.WorkflowWebSocketHandler
 
handleAction(ActionEvent) - Method in class org.kepler.gui.kar.ExportActorArchiveAction
Invoked when an action occurs.
handleAction(ActionEvent) - Method in class org.kepler.gui.kar.ExportArchiveAction
This method will set up the SaveKAR object in the case of saving a workflow.
handleAction(ActionEvent) - Method in class org.kepler.workflowrunmanager.gui.kar.ExportRunsArchiveAction
 
handleAddEvent() - Method in class org.kepler.tagging.gui.OntologyEditorUI
TODO
handleBinary(RoutingContext) - Method in class org.kepler.webview.server.handler.RunIdHandler
Handle a request to get the workflow for a specific run.
handleConfigureEvent() - Method in class org.kepler.tagging.gui.OntologyDisplayUI
TODO
handleDocumentationAttributeDoesNotExist(Frame, NamedObj) - Method in class org.kepler.gui.KeplerDocApplicationSpecializer
handle the case where the component does not have a KeplerDocumentation attribute
handleDocumentationAttributeDoesNotExist(Frame, NamedObj) - Method in interface ptolemy.vergil.actor.DocApplicationSpecializer
Handle the state where the documentation attribute does not exist and the user tried to edit the docs.
handleDocumentationNotFound(String, Effigy) - Method in class org.kepler.gui.KeplerDocApplicationSpecializer
handle the case where the user tried to edit documentation and the attribute does not exist.
handleDocumentationNotFound(String, Effigy) - Method in interface ptolemy.vergil.actor.DocApplicationSpecializer
Handle the state where there is no documentation attribute and the user tried to view the documentation.
handleError(String, NamedObj, Throwable) - Method in class ptolemy.actor.gui.ConfigurationApplication.IgnoreErrorHandler
Ignore the error.
handleError(String, NamedObj, Throwable) - Method in interface ptolemy.moml.ErrorHandler
Handle an error.
handleError(String, NamedObj, Throwable) - Method in class ptolemy.moml.SimpleErrorHandler
Handle an error by throwing an exception.
handleError(String, NamedObj, Throwable) - Method in class ptolemy.moml.StreamErrorHandler
Handle an error by printing a description of the error to the stream specified in the constructor.
handleError(String, NamedObj, Throwable) - Method in class ptolemy.moml.test.RecorderErrorHandler
Handle an error by printing a description of the error to the stream specified in the constructor.
handleError(String, NamedObj, Throwable) - Method in class ptolemy.vergil.VergilErrorHandler
Handle an error.
handleException(NamedObj, Throwable) - Method in class ptolemy.actor.lib.CatchExceptionAttribute
Handle an exception according to the specified policy: continue: Not implemented yet Consume the exception and return control to the director.
handleException(NamedObj, Throwable) - Method in class ptolemy.actor.lib.ExceptionManager
Handle an exception according to the specified policy: continue: Not implemented yet Consume the exception and return control to the director.
handleException(NamedObj, Throwable) - Method in class ptolemy.actor.lib.TestExceptionAttribute
Handle an exception thrown in a test.
handleException(NamedObj, Throwable) - Method in class ptolemy.actor.lib.TestExceptionHandler
Deprecated.
Handle an exception thrown in a test.
handleException(NamedObj, Throwable) - Method in interface ptolemy.kernel.util.ExceptionHandler
Handle an exception.
handleInitiatorList() - Method in class org.kepler.kar.KARBuilder
Handle the creation of the KAREntry objects for the Save Initiator List.
handleMetadata(NamedObj) - Method in class org.kepler.icon.IconMetadataHandler
add the SVG icon to the namedobj
handleMetadata(NamedObj) - Method in interface org.kepler.objectmanager.MetadataHandler
 
handleModelError(NamedObj, IllegalActionException) - Method in class ptolemy.domains.modal.kernel.FSMActor
Handle a model error.
handleModelError(NamedObj, IllegalActionException) - Method in class ptolemy.domains.modal.kernel.FSMDirector
Return true if the model errors are handled.
handleModelError(NamedObj, IllegalActionException) - Method in class ptolemy.domains.modal.modal.ModalModel
Handle a model error.
handleModelError(NamedObj, IllegalActionException) - Method in class ptolemy.kernel.util.BasicModelErrorHandler
Handle a model error by throwing the specified exception.
handleModelError(NamedObj, IllegalActionException) - Method in interface ptolemy.kernel.util.ModelErrorHandler
Handle a model error.
handleModelError(NamedObj, IllegalActionException) - Method in class ptolemy.kernel.util.NamedObj
Handle a model error.
handleModelError(NamedObj, IllegalActionException) - Method in class ptolemy.kernel.util.Workspace
Handle a model error by throwing the specified exception.
handleNewEvent() - Method in class org.kepler.tagging.gui.OntologyDisplayUI
 
handlePublishEvent() - Method in class org.kepler.tagging.gui.OntologyDisplayUI
TODO
HANDLER - Static variable in class org.kepler.kar.KAREntry
Name object for handler manifest attribute used for identifying which KAREntry handler was used to write this KAREntry.
handler - Variable in class org.kepler.reporting.rio.fop.tools.AbstractObjectReader
Proxy for easy SAX event generation
HandlerBase - Class in com.microstar.xml
Convenience base class for AElfred handlers.
HandlerBase() - Constructor for class com.microstar.xml.HandlerBase
 
handleRegisterEvent() - Method in class org.kepler.tagging.gui.OntologyDisplayUI
TODO
handleRemoveEvent() - Method in class org.kepler.tagging.gui.OntologyEditorUI
TODO
handleRunApp(RoutingContext) - Method in class org.kepler.webview.server.handler.RunWorkflowHandler
 
handleRunWorkflow(RoutingContext) - Method in class org.kepler.webview.server.handler.RunWorkflowHandler
 
handlesClass(String) - Static method in class org.kepler.kar.handlers.ActorMetadataKAREntryHandler
If the typeName is equal to or a subclass of any of the handled class types, then we return true.
HandlesInternalLinks - Interface in ptolemy.moml
A marker interface to suppress generation of links in undo.
handleStateChange(StateChangeEvent) - Method in class org.kepler.gui.frame.MultiCompositeTableau
React to changes in the selected tab in a TabbedKeplerGraphFrame.
handleStateChange(StateChangeEvent) - Method in interface org.kepler.gui.state.StateChangeListener
This method is called if there is a change in the state of the application.
handleStateChange(StateChangeEvent) - Method in class org.kepler.profiling.gui.PreviousExecutionPanel
React to a state change.
handleStateChange(StateChangeEvent) - Method in class org.kepler.profiling.gui.ViewWatchingTabPane
Handle view change events.
handleStateChange(StateChangeEvent) - Method in class org.kepler.profiling.gui.WorkflowRunOutlineTabPane
 
handleStateChange(StateChangeEvent) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
 
handleStateChange(StateChangeEvent) - Method in class org.kepler.reporting.gui.ReportViewerPanel
 
handleStateChange(StateChangeEvent) - Method in class org.kepler.reporting.gui.ReportViewerTOC
 
handleStateChange(StateChangeEvent) - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerDialog
Method will be called when configuration is done
handlesType(String) - Method in class org.kepler.kar.handlers.ActorMetadataKAREntryHandler
If the typeName is equal to or a subclass of any of the handled class types, then we return true.
handlesType(String) - Method in class org.kepler.kar.handlers.JARKAREntryHandler
JARs are not supported in KAR version 2.0 and 2.1
handlesType(String) - Method in class org.kepler.kar.handlers.ModuleTxtKAREntryHandler
This method should return true if this KAREntryHandler can handle the specified type.
handlesType(String) - Method in class org.kepler.kar.handlers.ProvKAREntryHandler
Get the KAR entry type we handle.
handlesType(String) - Method in class org.kepler.kar.handlers.ReportInstanceKAREntryHandler
 
handlesType(String) - Method in class org.kepler.kar.handlers.ReportLayoutKAREntryHandler
 
handlesType(String) - Method in class org.kepler.kar.handlers.WorkflowRunEntryHandler
 
handlesType(String) - Method in interface org.kepler.kar.KAREntryHandler
This method should return true if this KAREntryHandler can handle the specified type.
handleSubclassesEvent() - Method in class org.kepler.tagging.gui.OntologyEditorUI
TODO
handleThrowable(Throwable) - Method in class org.kepler.gis.display.JumpFrame
Description of the Method
handleThrowable(Throwable) - Method in class org.kepler.gis.display.JumpMapTab
Description of the Method
has(String) - Method in class org.json.JSONObject
Determine if the JSONObject contains a specific key.
hasAnchor() - Method in class org.kepler.objectmanager.lsid.KeplerLSID
 
hasBackwardMapping() - Method in interface ptolemy.graph.analysis.analyzer.Transformer
Specify if this transformer has a mapping from the transformed version to the original version or not.
hasBackwardMapping() - Method in class ptolemy.graph.analysis.MirrorTransformation
Specify if this transformation has a mapping from the transformed version to the original version or not.
hasBackwardMapping() - Method in class ptolemy.graph.analysis.strategy.ClusterNodesTransformerStrategy
Specify if this transformation has a mapping from the transformed version to the original version or not.
hasBackwardMapping() - Method in class ptolemy.graph.analysis.strategy.MirrorTransformerStrategy
Specify if this transformation has a mapping from the transformed version to the original version or not.
hasBranches() - Method in class ptolemy.actor.process.BranchController
Return true if this branch controller controls one or more branches; return false otherwise.
hasConnectionValues() - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.ResultRecord
Determine if the recordId and endpoint attributes have valid values for use in retrieving the record for parsing.
hasContainer(String) - Method in class org.mlc.swing.layout.LayoutFrame
 
hasContainer(String) - Method in interface org.mlc.swing.layout.MultiContainerFrame
Return true if the frame has a container with the specified name.
hasContainer(String) - Method in class ptolemy.actor.gui.run.RunLayoutFrame
Return true if the frame has a container with the specified name.
hasCycle() - Method in interface ptolemy.graph.analysis.analyzer.CycleExistenceAnalyzer
Return true if the graph under analysis has at least one cycle.
hasCycle() - Method in class ptolemy.graph.analysis.CycleExistenceAnalysis
Check if the graph under analysis has at least one cycle.
hasCycle() - Method in class ptolemy.graph.analysis.strategy.FloydWarshallCycleExistenceStrategy
Check acyclic property of the graph.
hasEntry(String) - Method in class ptolemy.gui.Query
Return whether an entry exists with the specified name.
hasEvent() - Method in class ptolemy.domains.modal.kernel.RelationList
Return true if there exists an event caused by the type change of any relation.
hasEvent() - Method in class ptolemy.domains.modal.kernel.RelationNode
Return true if the relation node has its type changed, and if the current type is equal/inequal or the current type changes from less_than to bigger_than or bigger_than to less_than.
hasException() - Method in class org.kepler.objectmanager.repository.EcogridRepositoryResults
returns true if the kar caching thread has thrown an exception
hasForwardMapping() - Method in interface ptolemy.graph.analysis.analyzer.Transformer
Specify if this transformer has a mapping from the original version to the transformed version or not.
hasForwardMapping() - Method in class ptolemy.graph.analysis.MirrorTransformation
Specify if this transformation has a mapping from the original version to the transformed version or not.
hasForwardMapping() - Method in class ptolemy.graph.analysis.strategy.ClusterNodesTransformerStrategy
Specify if this transformation has a mapping from the original version to the transformed version or not.
hasForwardMapping() - Method in class ptolemy.graph.analysis.strategy.MirrorTransformerStrategy
Specify if this transformation has a mapping from the original version to the transformed version or not.
hasGCP() - Method in class org.kepler.gis.util.RasterUtilities.RasterInfo
 
hash - Static variable in class org.geon.Scp
 
hash - Static variable in class org.sdm.spa.Ssh2Exec
 
HASH_INVALID - Static variable in interface ptolemy.data.type.Type
Used to indicate that the type comparison cache is invalid.
hashCode() - Method in class com.jgoodies.forms.layout.ConstantSize
Returns a hash code value for the object.
hashCode() - Method in class org.geon.DBConnectionToken
Return a hash code value for this token.
hashCode() - Method in class org.kepler.objectmanager.cache.LocalRepositoryManager.LocalRepository
Get the hash code of this LocalRepository.
hashCode() - Method in class org.kepler.objectmanager.lsid.KeplerLSID
 
hashCode() - Method in class org.kepler.sms.NamedOntClass
 
hashCode() - Method in class org.kepler.sms.NamedOntModel
 
hashCode() - Method in class org.kepler.spark.type.RecordValue
 
hashCode() - Method in class org.kepler.stratosphere.type.ByteArray
 
hashCode() - Method in class org.kepler.tagging.gui.CBItems.ExistingConceptCBItem
 
hashCode() - Method in class org.kepler.tagging.gui.DeletableColorIconLabel
 
hashCode() - Method in class org.kepler.tagging.Range
 
hashCode() - Method in class org.kepler.tagging.WindowIdentifier
 
hashCode() - Method in class org.ptolemy.commons.ThreeDigitVersionSpecification
Return the hash code of this object.
hashCode() - Method in class org.sdm.spa.actors.piw.viz.TranscriptionFactorBindingSite
 
hashCode() - Method in class ptolemy.actor.util.BooleanDependency
Return the same hashCode that that Java Boolean object would return had it the same value, which is the integer 1231 if this object represents true, and the integer 1237 if this object represents false.
hashCode() - Method in class ptolemy.actor.util.RealDependency
Return the same hashCode that that Java Double object would return had it the same value.
hashCode() - Method in class ptolemy.actor.util.SuperdenseDependency
Return the same hashCode that that Java Double object would return had it the same value as the real part of the value of this dependency.
hashCode() - Method in class ptolemy.actor.util.SuperdenseTime
Return the hash code for the SuperdenseTime object.
hashCode() - Method in class ptolemy.actor.util.Time
Return the hash code for the time object.
hashCode() - Method in class ptolemy.actor.util.TimedEvent
Return the hash code for the TimedEvent object.
hashCode() - Method in class ptolemy.data.ArrayToken
Return a hash code value for this token.
hashCode() - Method in class ptolemy.data.BooleanMatrixToken
Return a hash code value for this token.
hashCode() - Method in class ptolemy.data.BooleanToken
Return a hash code value for this token.
hashCode() - Method in class ptolemy.data.ComplexMatrixToken
Return a hash code value for this token.
hashCode() - Method in class ptolemy.data.ComplexToken
Return a hash code value for this token.
hashCode() - Method in class ptolemy.data.DoubleMatrixToken
Return a hash code value for this token.
hashCode() - Method in class ptolemy.data.DoubleToken
Return a hash code value for this token.
hashCode() - Method in class ptolemy.data.EventToken
Return a hash code value for this token.
hashCode() - Method in class ptolemy.data.expr.CachedMethod
Return the hash code.
hashCode() - Method in class ptolemy.data.FixMatrixToken
Return a hash code value for this token.
hashCode() - Method in class ptolemy.data.FixToken
Return a hash code value for this value.
hashCode() - Method in class ptolemy.data.FloatToken
Return a hash code value for this token.
hashCode() - Method in class ptolemy.data.IntMatrixToken
Return a hash code value for this token.
hashCode() - Method in class ptolemy.data.IntToken
Return a hash code value for this token.
hashCode() - Method in class ptolemy.data.LongMatrixToken
Return a hash code value for this token.
hashCode() - Method in class ptolemy.data.LongToken
Return a hash code value for this token.
hashCode() - Method in class ptolemy.data.ObjectToken
Return a hash code value for this token.
hashCode() - Method in class ptolemy.data.OrderedRecordToken
Return a hash code value for this token.
hashCode() - Method in class ptolemy.data.PetiteToken
Return a hash code value for this token.
hashCode() - Method in class ptolemy.data.RecordToken
Return a hash code value for this token.
hashCode() - Method in class ptolemy.data.ShortToken
Return a hash code value for this token.
hashCode() - Method in class ptolemy.data.SmoothToken
Return the hash code for the SmoothToken object.
hashCode() - Method in class ptolemy.data.StringToken
Return a hash code value for this token.
hashCode() - Method in class ptolemy.data.TupleToken
Return a hash code value for this token.
hashCode() - Method in class ptolemy.data.type.ArrayType
Return a hash code value for this object.
hashCode() - Method in class ptolemy.data.type.BaseType
Return a hash code value for this object.
hashCode() - Method in class ptolemy.data.type.FixType
Return a hash code value for this object.
hashCode() - Method in class ptolemy.data.type.FunctionType
Return a hash code value for this object.
hashCode() - Method in class ptolemy.data.type.MatrixType
Return a hash code value for this object.
hashCode() - Method in class ptolemy.data.type.ObjectType
Return the hash code for this object.
hashCode() - Method in class ptolemy.data.type.RecordType
Return a hash code value for this object.
hashCode() - Method in class ptolemy.data.type.TupleType
Return a hash code value for this object.
hashCode() - Method in class ptolemy.data.type.TypeConstant
Return the hashCode of the type.
hashCode() - Method in class ptolemy.data.type.UnionType
Return a hash code value for this object.
hashCode() - Method in class ptolemy.data.UnionToken
Return a hash code value for this token.
hashCode() - Method in class ptolemy.data.UnsignedByteToken
Return a hash code value for this token.
hashCode() - Method in class ptolemy.data.XMLToken
Return the hash code for the XMLToken object.
hashCode() - Method in class ptolemy.domains.de.kernel.DEEvent
Return the hash code for the event object.
hashCode() - Method in class ptolemy.domains.modal.kernel.ia.StatePair
Override the base class method to ensure that the pairs that are equal (according to the equals() method) have the same hash code.
hashCode() - Method in class ptolemy.graph.Graph
Returns the hash code for this graph.
hashCode() - Method in class ptolemy.graph.Inequality
Return the hashCode of this object.
hashCode() - Method in class ptolemy.graph.LabeledList
Return the hash code value for this list.
hashCode() - Method in class ptolemy.graph.mapping.MapMapping
Return the hash code of this MapMapping.
hashCode() - Method in class ptolemy.kernel.attributes.RequireVersion
Return a hash code value for attribute.
hashCode() - Method in class ptolemy.kernel.attributes.VersionAttribute
Return a hash code value for attribute.
hashCode() - Method in class ptolemy.math.Complex
Return a hash code value for this Complex.
hashCode() - Method in class ptolemy.math.FixPoint
Return a hash code value for this value.
hashCode() - Method in class ptolemy.math.FixPointQuantization
Return a hash code value for this FixPointQuantization.
hashCode() - Method in class ptolemy.math.Fraction
Return a hash code value for this Fraction.
hashCode() - Method in class ptolemy.math.Overflow
Return a hash code value for this object.
hashCode() - Method in class ptolemy.math.Precision
Return a hash code value for this Precision.
hashCode() - Method in class ptolemy.math.Quantization
Return a hash code value for this Quantization.
hashCode() - Method in class ptolemy.math.Rounding
Return a hash code value for this object.
hashCode() - Method in class ptolemy.moml.unit.Unit
Return a hash code value for this Unit.
hasInput(String) - Method in class org.kepler.ddp.actor.ExecutionChoice
Returns true if there is an input with the given name.
hasInput() - Method in class ptolemy.domains.modal.kernel.FSMActor
Test whether new input tokens have been received at the input ports.
hasInput(Port) - Method in class ptolemy.domains.modal.kernel.FSMActor
Test whether new input tokens have been received at the given input port.
hasKnownLength() - Method in class ptolemy.data.type.ArrayType
Return true if the length of this array type has been determined.
hasLeafValue() - Method in class org.kepler.configuration.ConfigurationProperty
return true if this property has a string value
hasLocation(String) - Method in class org.kepler.gui.ClassicViewPane
 
hasLocation(String) - Method in class org.kepler.gui.DefaultViewPane
 
hasLocation(String) - Method in class org.kepler.gui.DualVerticalViewPane
 
hasLocation(String) - Method in class org.kepler.gui.SingleViewPane
 
hasLocation(String) - Method in interface org.kepler.gui.ViewPane
This method must return true if the supplied location name matches the name of one of the supported ViewPaneLocations for this ViewPane.
hasLocation(Object) - Method in class ptolemy.vergil.basic.LocatableNodeController
Return true if the node is associated with a desired location.
hasMissingValue() - Method in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200Parser
if the entity has missing value declaretion
hasModifiedAnnotationObjects() - Method in class org.kepler.sms.gui.SemanticTypeTable
 
hasModifiedSemTypes() - Method in class org.kepler.sms.gui.ActorSemanticTypeEditorPane
 
hasModifiedSemTypes() - Method in class org.kepler.sms.gui.PortSemanticTypeEditorPane
 
hasNameSpace() - Method in class org.kepler.sms.NamedOntClass
 
hasNegativeLengthCycle() - Method in interface ptolemy.graph.analysis.analyzer.NegativeLengthCycleAnalyzer
Return true if a negative cycle exists in the graph under analysis.
hasNegativeLengthCycle() - Method in class ptolemy.graph.analysis.NegativeLengthCycleAnalysis
Return true if a negative cycle exists in the graph under analysis.
hasNegativeLengthCycle() - Method in class ptolemy.graph.analysis.strategy.FloydWarshallNegativeLengthCycleStrategy
Return true if a negative cycle exists in the graph under analysis.
hasNestedProperties() - Method in class org.kepler.configuration.ConfigurationProperty
return true if this property has nested properties
hasNewerSchema(Schema) - Method in class org.kepler.util.sql.DatabaseType
Returns true of the database schema is newer than the schema definition.
hasNewToken(int) - Method in class ptolemy.actor.IOPort
Return true if the specified channel has a new token to deliver via the get() method.
hasNewTokenInside(int) - Method in class ptolemy.actor.IOPort
Return true if the specified channel has a token to deliver via the getInside() method.
hasNext() - Method in class ptolemy.actor.LazyTypedCompositeActor.ContainedObjectsIterator
Return true if the iteration has more elements.
hasNext() - Method in class ptolemy.kernel.CompositeEntity.ContainedObjectsIterator
Return true if the iteration has more elements.
hasNext() - Method in class ptolemy.kernel.Entity.ContainedObjectsIterator
Return true if the iteration has more elements.
hasNext() - Method in class ptolemy.kernel.util.NamedObj.ContainedObjectsIterator
Return true if the iteration has more elements.
hasOlderSchema(Schema) - Method in class org.kepler.util.sql.DatabaseType
Returns true if the database schema is older than the schema definition.
hasOutput(String) - Method in class org.kepler.ddp.actor.ExecutionChoice
Returns true if there is an output with the given name.
hasReferral(KeplerLSID) - Method in class org.kepler.moml.NamedObjIdReferralList
 
hasReportingLayout() - Method in class org.kepler.kar.karxml.KarXml.KarEntry
 
hasReportLayout() - Method in class org.kepler.kar.karxml.KarXml
 
hasReportLayout() - Method in class org.kepler.kar.karxml.KarXmlGenerator
Determine if the generated kar xml has a report layout.
hasReportLayout - Static variable in class org.kepler.workflowscheduler.gui.SchedulerAbstractAction
 
hasRoom() - Method in class ptolemy.actor.AbstractReceiver
Return true if the receiver has room to put a token into it (via the put() method).
hasRoom(int) - Method in class ptolemy.actor.AbstractReceiver
Return true if the receiver has room to put the specified number of tokens into it (via the put() method).
hasRoom() - Method in class ptolemy.actor.IntermediateReceiver
Delegate to the internal receiver and return whatever it returns.
hasRoom(int) - Method in class ptolemy.actor.IntermediateReceiver
Delegate to the internal receiver and return whatever it returns.
hasRoom(int) - Method in class ptolemy.actor.IOPort
Return true if the specified channel can accept a token via the put() method.
hasRoom() - Method in class ptolemy.actor.Mailbox
Return true if this mailbox is empty.
hasRoom(int) - Method in class ptolemy.actor.Mailbox
Return true if the argument is 1 and the mailbox is empty, and otherwise return false.
hasRoom() - Method in class ptolemy.actor.QueueReceiver
Return true if the next call to put() will succeed without a NoRoomException.
hasRoom(int) - Method in class ptolemy.actor.QueueReceiver
Return true if the queue has room to put the given number of tokens into it (via the put() method).
hasRoom() - Method in interface ptolemy.actor.Receiver
Return true if the receiver has room to put a token into it (via the put() method).
hasRoom(int) - Method in interface ptolemy.actor.Receiver
Return true if the receiver has room to put the specified number of tokens into it (via the put() method).
hasRoom() - Method in class ptolemy.actor.sched.FixedPointReceiver
Return true if the status of the receiver is unknown.
hasRoom(int) - Method in class ptolemy.actor.sched.FixedPointReceiver
If the argument is 1, return true if the status of the receiver is unknown.
hasRoom() - Method in class ptolemy.actor.test.TestAbstractReceiver
Return true if the receiver has room to put a token into it (via the put() method).
hasRoom(int) - Method in class ptolemy.actor.test.TestAbstractReceiver
Return true if the receiver has room to put the specified number of tokens into it (via the put() method).
hasRoom() - Method in class ptolemy.domains.de.kernel.DEReceiver
Return true, indicating that there is always room.
hasRoom(int) - Method in class ptolemy.domains.de.kernel.DEReceiver
Return true if the receiver has room for putting the given number of tokens into it (via the put() method).
hasRoom() - Method in class ptolemy.domains.modal.kernel.FSMReceiver
Return true.
hasRoom(int) - Method in class ptolemy.domains.modal.kernel.FSMReceiver
Return true if the argument is 1, and otherwise return false.
hasRoom() - Method in class ptolemy.domains.pn.kernel.PNQueueReceiver
Return true, since a channel in the Kahn process networks model of computation is of infinite capacity and always has room.
hasRoom(int) - Method in class ptolemy.domains.pn.kernel.PNQueueReceiver
Return true, since a channel in the Kahn process networks model of computation is of infinite capacity and always has room.
hasRoom() - Method in class ptolemy.domains.sdf.kernel.SDFReceiver
Return true if put() will succeed in accepting a token.
hasRoom(int) - Method in class ptolemy.domains.sdf.kernel.SDFReceiver
Return true if put() will succeed in accepting the specified number of tokens.
hasRoomInside(int) - Method in class ptolemy.actor.IOPort
Return true if the specified channel can accept a token via the putInside() method.
hasSameType(Unit) - Method in class ptolemy.moml.unit.Unit
Return true if the Unit has the same type as another Unit.
hasTag(NamedOntClass) - Method in class org.kepler.tagging.gui.ExistingTagsPanel
 
hasTarget(Entity) - Method in class ptolemy.actor.gui.DialogTableau
Determines if a particular Entity is associated with this DialogTableau.
hasTheSameTagAndDepthAs(DEEvent) - Method in class ptolemy.domains.de.kernel.DEEvent
Return true if this event has the same tag with the specified one, and their depths are the same.
hasTheSameTagAs(DEEvent) - Method in class ptolemy.domains.de.kernel.DEEvent
Return true if this event has the same tag as the argument DE event.
hasToken() - Method in class ptolemy.actor.AbstractReceiver
Return true if the receiver contains a token that can be obtained by calling the get() method.
hasToken(int) - Method in class ptolemy.actor.AbstractReceiver
Return true if the receiver contains the specified number of tokens.
hasToken() - Method in class ptolemy.actor.IntermediateReceiver
Delegate to the internal receiver and return whatever it returns.
hasToken(int) - Method in class ptolemy.actor.IntermediateReceiver
Delegate to the internal receiver and return whatever it returns.
hasToken(int) - Method in class ptolemy.actor.IOPort
Return true if the port is persistent (see IOPort.defaultValue), or if the most recent input was an SmoothToken, or if the specified channel has a token to deliver via the get() method.
hasToken(int, int) - Method in class ptolemy.actor.IOPort
Return true if the specified channel has the specified number of tokens to deliver via the get() method.
hasToken() - Method in class ptolemy.actor.Mailbox
Return true if this mailbox is not empty.
hasToken(int) - Method in class ptolemy.actor.Mailbox
Return true if the argument is 1 and this mailbox is not empty, and otherwise return false.
hasToken() - Method in class ptolemy.actor.QueueReceiver
Return true if the next call to get() will succeed without a a NoTokenException.
hasToken(int) - Method in class ptolemy.actor.QueueReceiver
Return true if the specified number of tokens is available in the queue.
hasToken() - Method in interface ptolemy.actor.Receiver
Return true if the receiver contains a token that can be obtained by calling the get() method.
hasToken(int) - Method in interface ptolemy.actor.Receiver
Return true if the receiver contains the specified number of tokens.
hasToken() - Method in class ptolemy.actor.sched.FixedPointReceiver
Return true if the receiver contains a token, and false otherwise.
hasToken(int) - Method in class ptolemy.actor.sched.FixedPointReceiver
If the argument is 1, return true if the receiver contains a token, and false otherwise.
hasToken(int) - Method in class ptolemy.actor.SubscriptionAggregatorPort
Return true if any input channel has a token.
hasToken(int, int) - Method in class ptolemy.actor.SubscriptionAggregatorPort
Return true if every input channel that has tokens has enough tokens.
hasToken() - Method in class ptolemy.actor.test.TestAbstractReceiver
Return true if the receiver contains a token that can be obtained by calling the get() method.
hasToken(int) - Method in class ptolemy.actor.test.TestAbstractReceiver
Return true if the receiver contains the specified number of tokens.
hasToken() - Method in class ptolemy.domains.de.kernel.DEReceiver
Return true if there is at least one token available to the get() method.
hasToken(int) - Method in class ptolemy.domains.de.kernel.DEReceiver
Return true if there are numberOfTokens tokens tokens available to the get() method.
hasToken() - Method in class ptolemy.domains.modal.kernel.FSMReceiver
Return true if this mailbox is not empty.
hasToken(int) - Method in class ptolemy.domains.modal.kernel.FSMReceiver
Return true if the argument is 1 and this receiver is not empty, and otherwise return false.
hasToken() - Method in class ptolemy.domains.pn.kernel.PNQueueReceiver
Return true, since a call to the get() method of the receiver will always return a token if the call to get() ever returns.
hasToken(int) - Method in class ptolemy.domains.pn.kernel.PNQueueReceiver
Return true, since a call to the get() method of the receiver will always return a token if the call to get() ever returns.
hasToken() - Method in class ptolemy.domains.sdf.kernel.SDFReceiver
Return true if get() will succeed in returning a token.
hasToken(int) - Method in class ptolemy.domains.sdf.kernel.SDFReceiver
Return true if get() will succeed in returning a token the given number of times.
hasTokenInside(int) - Method in class ptolemy.actor.IOPort
Return true if the port is persisent or the specified channel has a token to deliver via the getInside() method.
hasTrigger - Variable in class org.sdm.spa.BrowserUI
A boolean parameter indicating whether trigger port has to be activated in order to schedule the actor.
hasTrigger - Variable in class org.sdm.spa.CommandLine
 
hasTrigger - Variable in class org.sdm.spa.CommandLineExec
Unhide the trigger port when this parameter is true.
hasTrigger - Variable in class org.sdm.spa.MessageBasedWebService
Deprecated.
This is an parameter to activate the optional startTrigger port.
hasTrigger - Variable in class org.sdm.spa.WebService
This is an parameter to activate the optional startTrigger port.
hasTrigger - Variable in class org.sdm.spa.WebServiceStub
Deprecated.
 
hasTrigger - Variable in class org.srb.SProxy
Specify whether to add a trigger port.
hasTrigger - Variable in class org.srb.SRBProxyCommand
Unhide the trigger port when this parameter is true.
HasTypeConstraints - Interface in ptolemy.data.type
Interface for objects that have type constraints.
hasUndoableChildren() - Method in class ptolemy.moml.UndoContext
Return whether or not child nodes need to generate MoML.
hasUndoMoML() - Method in class ptolemy.moml.UndoContext
Return whether or not this context has any undo MoML to be processed.
hasUnknownSemTypes() - Method in class org.kepler.sms.gui.SemanticTypeTable
 
hasWeight() - Method in class ptolemy.graph.Element
Return true if and only if this is a weighted element.
hasWidthConstraints() - Method in class ptolemy.actor.IOPort
Return whether there are constraints on the width of this port.
hasZeroLengthCycle() - Method in interface ptolemy.graph.analysis.analyzer.ZeroLengthCycleAnalyzer
Return true if a zero-length cycle exists in the graph under analysis.
hasZeroLengthCycle() - Method in class ptolemy.graph.analysis.strategy.FloydWarshallZeroLengthCycleStrategy
Return true if a zero length cycle exists in the graph under analysis.
hasZeroLengthCycle() - Method in class ptolemy.graph.analysis.ZeroLengthCycleAnalysis
Return true if a zero length cycle exists in the graph under analysis.
haveShutdown() - Static method in class org.kepler.module.workflowrunmanager.Shutdown
Returns true if shutdownModule has been called.
HDFS_NAME - Static variable in class org.kepler.hadoop.actor.HDFSWriter
 
HDFS_NAME - Static variable in class org.kepler.hadoop.director.HadoopEngine
 
HDFSLoader - Class in org.kepler.hadoop.actor
This class load files/directories to HDFS.
HDFSLoader(CompositeEntity, String) - Constructor for class org.kepler.hadoop.actor.HDFSLoader
 
hdfsPaths - Variable in class org.kepler.hadoop.actor.HDFSRemover
The full paths on HDFS that need to be deleted.
hdfsPathsOut - Variable in class org.kepler.hadoop.actor.HDFSRemover
The full paths on HDFS that need to be deleted.
HDFSRemover - Class in org.kepler.hadoop.actor
This class remove files/directories at HDFS.
HDFSRemover(CompositeEntity, String) - Constructor for class org.kepler.hadoop.actor.HDFSRemover
 
HDFSUnLoader - Class in org.kepler.hadoop.actor
This class copies HDFS data into local file system.
HDFSUnLoader(CompositeEntity, String) - Constructor for class org.kepler.hadoop.actor.HDFSUnLoader
 
HDFSWriter - Class in org.kepler.hadoop.actor
This class write tokens to HDFS.
HDFSWriter(CompositeEntity, String) - Constructor for class org.kepler.hadoop.actor.HDFSWriter
 
HEAD - Static variable in class ptolemy.vergil.basic.export.web.WebElement
A special constant indicating that the <head/> element should be the parent.
header - Variable in class org.kepler.actor.Logger
The header information to be printed with the log.
header - Variable in class org.kepler.workflowrunmanager.gui.GroupableTableHeaderUI.MouseInputHandler
 
HEADER_ROW - Static variable in class org.kepler.workflowrunmanager.gui.GroupableTableHeader
 
headerEditor - Variable in class org.kepler.workflowrunmanager.gui.ColumnGroup
 
headerGraphic - Variable in class org.kepler.reporting.roml.ReportLayout
 
headerInfo() - Method in class ptolemy.moml.unit.Solution
Create a human readable presentation of the parts of the solution that won't change as a result of the operations necessary to carry out the Gaussian elimination.
headerParameter - Variable in class ptolemy.actor.lib.xslt.XMLInclusion
The xml header.
HEADNAME - Static variable in class org.ecoinformatics.seek.ecogrid.ServicesDisplayPanel
 
HEIGHT - Static variable in class org.ecoinformatics.seek.ecogrid.EcogridPreferencesTab
Description of the Field
height - Static variable in class org.geon.TernaryDiagram
 
height - Variable in class org.kepler.gis.actor.conversions.VectorToRaster
The height of the raster in pixels.
height - Variable in class ptolemy.actor.gui.style.TextStyle
The height (in lines) of the text box.
height - Variable in class ptolemy.actor.lib.gui.MatrixViewer
The height of the table in pixels.
height - Variable in class ptolemy.vergil.basic.export.web.WebContent
Parameter specifying the height of the editing box.
height - Variable in class ptolemy.vergil.kernel.attributes.FilledShapeAttribute
The vertical extent.
helpFile - Variable in class ptolemy.actor.gui.TableauFrame
The name of the default file to open when Help is invoked.
helpURL - Variable in class ptolemy.vergil.basic.layout.AbstractLayoutConfiguration
Customized help file to be displayed by the layout configuration dialog.
HEX_LITERAL - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
hidden(Edge) - Method in class ptolemy.graph.Graph
Return true if a given edge is hidden in this graph.
hiddenEdgeCount() - Method in class ptolemy.graph.Graph
Return the number of hidden edges in the graph.
hiddenEdges() - Method in class ptolemy.graph.Graph
Return all the hidden edges in this graph in the form of a collection.
HiddenStyle - Class in ptolemy.actor.gui.style
This attribute annotates user settable attributes to specify a version of the line style which is invisible.
HiddenStyle() - Constructor for class ptolemy.actor.gui.style.HiddenStyle
Construct an attribute in the default workspace with an empty string as its name.
HiddenStyle(Workspace) - Constructor for class ptolemy.actor.gui.style.HiddenStyle
Construct an attribute in the given workspace with an empty string as its name.
HiddenStyle(NamedObj, String) - Constructor for class ptolemy.actor.gui.style.HiddenStyle
Construct an attribute with the specified container and name.
hide - Variable in class org.ecoinformatics.seek.ecogrid.quicksearch.ResultRecord
 
hide - Variable in class org.sdm.spa.BrowserUI
 
hide - Variable in class org.sdm.spa.CommandLine
 
hide - Variable in class org.sdm.spa.CommandLineExec
The attribute to hide or show the trigger port without deleting it.
hide - Variable in class org.sdm.spa.MessageBasedWebService
Deprecated.
 
hide - Variable in class org.sdm.spa.WebService
 
hide - Variable in class org.srb.SRBProxyCommand
 
hide(boolean) - Method in class ptolemy.domains.modal.kernel.FSMTransitionParameter
If hide is true, hide the parameter and display transition parameters next to the transition.
HideAnnotationNames - Class in ptolemy.moml.filter
When this class is registered with the MoMLParser.addMoMLFilter() method, it will cause MoMLParser to add a _hideName property property for any annotations.
HideAnnotationNames() - Constructor for class ptolemy.moml.filter.HideAnnotationNames
 
hideCon - Variable in class org.kepler.dataproxy.datasource.geon.GEONDatabaseResource
 
hideEdge(Edge) - Method in class ptolemy.graph.Graph
Hide an edge if the edge exists in the graph and is not already hidden.
hideMdasDomain - Variable in class org.srb.SProxy
 
hideMenuBar() - Method in class ptolemy.gui.Top
If called before the first time pack() is called, this method will prevent the appearance of a menu bar.
hideNewPath - Variable in class org.srb.SProxy
 
hidePermission - Variable in class org.srb.SProxy
 
hideTagManagerFrame() - Static method in class org.kepler.tagging.gui.TagManagerUI
 
hideTP - Variable in class org.kepler.actor.ssh.ExecuteCmd
_hide parameter of thirdParty.
hideTrigger - Variable in class org.srb.SProxy
 
hideUserName - Variable in class org.srb.SProxy
 
HierarchicalConfigurer(Query, String, Settable, Component) - Constructor for class ptolemy.actor.gui.PtolemyQuery.HierarchicalConfigurer
Create a panel containing an entry box and a button.
HierarchicalStateController - Class in ptolemy.vergil.modal.modal
This class provides interaction with nodes that represent hierarchical states in an FSM graph.
HierarchicalStateController(GraphController) - Constructor for class ptolemy.vergil.modal.modal.HierarchicalStateController
Create a state controller associated with the specified graph controller.
HierarchicalStateController(GraphController, AttributeController.Access) - Constructor for class ptolemy.vergil.modal.modal.HierarchicalStateController
Create a state controller associated with the specified graph controller.
HierarchicalStateController.AddRefinementAction - Class in ptolemy.vergil.modal.modal
An action to add a new refinement.
HierarchicalStateController.RemoveRefinementAction - Class in ptolemy.vergil.modal.modal
Action to remove refinements.
HierarchicalStateControllerFactory - Class in ptolemy.vergil.modal.modal
This is attribute that produces a custom node controller for hierarchical states.
HierarchicalStateControllerFactory(NamedObj, String) - Constructor for class ptolemy.vergil.modal.modal.HierarchicalStateControllerFactory
Construct a new attribute with the given container and name.
hierarchyChanged() - Method in class ptolemy.actor.AbstractInitializableAttribute
Notify this object that the containment hierarchy above it has changed.
hierarchyChanged() - Method in class ptolemy.actor.lib.ExceptionManager
Notify this object that the containment hierarchy above it has changed.
hierarchyChanged() - Method in class ptolemy.actor.PublisherPort
Notify this object that the containment hierarchy above it has changed.
hierarchyChanged() - Method in class ptolemy.actor.PubSubPort
Notify this object that the containment hierarchy above it has changed.
hierarchyChanged() - Method in class ptolemy.actor.SubscriberPort
Notify this object that the containment hierarchy above it has changed.
hierarchyChanged() - Method in class ptolemy.data.expr.AbstractInitializableParameter
Notify this object that the containment hierarchy above it has changed.
hierarchyChanged() - Method in class ptolemy.data.expr.ConstraintMonitor.ConstraintMonitorAttributes
Notify this object that the containment hierarchy above it has changed.
hierarchyChanged() - Method in interface ptolemy.kernel.util.HierarchyListener
Notify this object that the containment hierarchy above it has changed.
HierarchyListener - Interface in ptolemy.kernel.util
Interface for objects that need to be notified of hierarchy changes above them.
hierarchyWillChange() - Method in class ptolemy.actor.AbstractInitializableAttribute
Notify this object that the containment hierarchy above it will be changed.
hierarchyWillChange() - Method in class ptolemy.actor.lib.ExceptionManager
Notify this object that the containment hierarchy above it will be changed.
hierarchyWillChange() - Method in class ptolemy.actor.PublisherPort
Notify this object that the containment hierarchy above it will be changed, which results in publisher ports being unregistered.
hierarchyWillChange() - Method in class ptolemy.actor.PubSubPort
Notify this object that the containment hierarchy above it will be changed, which results in this port being removed from the set of initializables of the container.
hierarchyWillChange() - Method in class ptolemy.actor.SubscriberPort
Notify this object that the containment hierarchy above it will be changed, which results in the channel being unlinked from the publisher.
hierarchyWillChange() - Method in class ptolemy.data.expr.AbstractInitializableParameter
Notify this object that the containment hierarchy above it will be changed, which results in
hierarchyWillChange() - Method in class ptolemy.data.expr.ConstraintMonitor.ConstraintMonitorAttributes
Record the current decorator.
hierarchyWillChange() - Method in interface ptolemy.kernel.util.HierarchyListener
Notify this object that the containment hierarchy above it will be changed.
HIGH_QUALITY - Static variable in class org.kepler.monitor.MonitoredStatus.State
 
highColor - Variable in class ptolemy.vergil.icon.ConstraintMonitorIcon
Color of the box to use when the constraint is above the threshold.
HIGHER - Static variable in interface ptolemy.graph.CPO
One of the return values of compare, indicating that the first element is higher than the second.
highlightColor - Variable in class ptolemy.vergil.basic.DependencyHighlighter
The highlight color.
highlightError(Nameable) - Method in class ptolemy.vergil.basic.BasicGraphController
Highlight the specified object and all its containers to indicate that it is the source of an error.
hilbert(int) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new matrix, which is defined by Aij = 1/(i+j+1), the Hilbert matrix.
hilbert(int) - Static method in class ptolemy.math.FloatMatrixMath
Return a new matrix, which is defined by Aij = 1/(i+j+1), the Hilbert matrix.
Histogram - Class in ptolemy.plot
A histogram plotter.
Histogram() - Constructor for class ptolemy.plot.Histogram
 
HistogramApplet - Class in ptolemy.plot
A Histogram.
HistogramApplet() - Constructor for class ptolemy.plot.HistogramApplet
 
HistogramDemo - Class in ptolemy.plot.demo
A Histogram demo.
HistogramDemo() - Constructor for class ptolemy.plot.demo.HistogramDemo
 
HistogramMLApplet - Class in ptolemy.plot.plotml
This applet reads a URL giving a PlotML file that contains data.
HistogramMLApplet() - Constructor for class ptolemy.plot.plotml.HistogramMLApplet
 
HistogramMLApplication - Class in ptolemy.plot.plotml
An application that can histogram data in PlotML format from a URL or from files specified on the command line.
HistogramMLApplication() - Constructor for class ptolemy.plot.plotml.HistogramMLApplication
Construct a histogram with no command-line arguments.
HistogramMLApplication(String[]) - Constructor for class ptolemy.plot.plotml.HistogramMLApplication
Construct a plot with the specified command-line arguments.
HistogramMLApplication(Histogram, String[]) - Constructor for class ptolemy.plot.plotml.HistogramMLApplication
Construct a plot with the specified command-line arguments and instance of plot.
HistogramMLParser - Class in ptolemy.plot.plotml
This class constructs a histogram from specifications in PlotML (Plot Markup Language), which is an XML language.
HistogramMLParser(Histogram) - Constructor for class ptolemy.plot.plotml.HistogramMLParser
Construct an parser to parse commands for the specified plot object.
HistogramPlotter - Class in ptolemy.actor.lib.gui
A histogram plotter.
HistogramPlotter(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.gui.HistogramPlotter
Construct an actor with the given container and name.
history - Variable in class ptolemy.domains.modal.kernel.Transition
Parameter specifying whether the refinements of the destination state are initialized when the transition is taken.
historyElementList() - Method in class ptolemy.actor.QueueReceiver
Deprecated.
Used historyElementList() instead.
historyElementList() - Method in class ptolemy.actor.util.FIFOQueue
List the objects in the history, which are the N most recent objects taken from the queue, beginning with the oldest, where N is less than or equal to the history capacity.
historyElements() - Method in class ptolemy.actor.QueueReceiver
Deprecated.
Used historyElementList() instead.
historyElements() - Method in class ptolemy.actor.util.FIFOQueue
Deprecated.
Use historyElementList() instead.
historyElements() - Method in class ptolemy.domains.sdf.kernel.ArrayFIFOQueue
Enumerate the objects in the history, which are the N most recent objects taken from the queue, beginning with the oldest, where N is less than or equal to the history capacity.
historyElements() - Method in class ptolemy.domains.sdf.kernel.SDFReceiver
Enumerate the tokens stored in the history queue, which are the N most recent tokens taken from the receiver, beginning with the oldest, where N is less than or equal to the history capacity.
historyLength - Variable in class org.sdm.spa.gui.DoubleShellTextAreaPanel
Size of the history to keep.
historyLength - Variable in class ptolemy.gui.ShellTextArea
Size of the history to keep.
historySize() - Method in class ptolemy.actor.QueueReceiver
Return the number of tokens in history.
historySize() - Method in class ptolemy.actor.util.FIFOQueue
Return the number of objects in the history.
historySize() - Method in class ptolemy.domains.sdf.kernel.ArrayFIFOQueue
Return the number of objects in the history.
historySize() - Method in class ptolemy.domains.sdf.kernel.SDFReceiver
Return the number of tokens in history.
hit(Rectangle2D) - Method in class ptolemy.vergil.unit.BasicEdgeHighlighter
Return false.
holdLastOutput - Variable in class ptolemy.actor.lib.Sequence
A flag indicating whether to interpret the values as an infinite sequence where the last value is repeated forever.
home - Variable in class org.ecoinformatics.seek.R.RExpression
 
HORIZONTAL - Static variable in class ptolemy.actor.gui.ModelPane
Indicator to use a horizontal layout.
horizontalAlign - Variable in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Parameter specifying the horizontal position of the legend on the figure.
host - Variable in class org.geon.FTPClient
host server name.
host - Variable in class org.geon.Scp
Host to connect to.
host - Variable in class org.kepler.gis.actor.pylaski.PylaskiUtilities.Settings
 
host - Variable in class org.sdm.spa.Email
The SMTP host of the from address.
host - Variable in class org.sdm.spa.Ssh2Exec
Host to connect to.
hostname - Variable in class org.kepler.provenance.ProvenanceRecorder
Local hostname.
HostStr - Variable in class org.sdm.spa.ProcessFileRT
 
HOTKEY_TYPE - Static variable in class ptolemy.vergil.toolbox.FigureAction
When the action was fired from a hotkey.
HOUR - Static variable in class org.kepler.workflowscheduler.gui.Schedule
 
hour - Variable in class ptolemy.actor.lib.DateConstructor
The hour of the day.
hour - Variable in class ptolemy.actor.lib.DateElements
Hour of date received on input.
HR - Static variable in class org.kepler.reporting.rio.StaticReportItemHR
 
hrrrx - Variable in class org.kepler.gis.actor.pylaski.GetPylaskiMeasurements
 
HSQL - Class in org.kepler.util.sql
An implementation of DatabaseType for HSQL.
HSQL() - Constructor for class org.kepler.util.sql.HSQL
Only this package (DatabaseFactory) can instantiate.
HsqlDataQueryAction - Class in org.ecoinformatics.seek.dataquery
This class will handle data query action base on Hsql sql engine
HsqlDataQueryAction() - Constructor for class org.ecoinformatics.seek.dataquery.HsqlDataQueryAction
Default constructor.
HSQLManager - Class in org.kepler.module.core
A class to start and stop the two HSQL databases managed by the core module: KeplerData/modules/core/coreDB .kepler/cache-2.1/cachedata/hsqldb The HSQL servers are run in a separate process.
HSQLManager() - Constructor for class org.kepler.module.core.HSQLManager
 
HSQLManager - Class in org.kepler.module.provenance
A class to start and stop the HSQL database managed by the provenance module: KeplerData/modules/provenance/provenanceDB The HSQL server is run in a separate process.
HSQLManager() - Constructor for class org.kepler.module.provenance.HSQLManager
 
html - Variable in class org.kepler.webview.actor.WebViewAttribute
 
html - Variable in class org.srb.SRBCreateQueryInterface
HTML string.
HTMLAbout - Class in ptolemy.actor.gui
This class contains static methods that are called by when HTMLViewer.hyperlinkUpdate() is invoked on a hyperlink that starts with about:.
HTMLAbout() - Constructor for class ptolemy.actor.gui.HTMLAbout
 
HTMLAboutJUnitTest - Class in ptolemy.actor.gui.test.junit
Test out HTMLAbout by starting vergil with various URLs.
HTMLAboutJUnitTest() - Constructor for class ptolemy.actor.gui.test.junit.HTMLAboutJUnitTest
 
htmlCode - Variable in class org.kepler.webview.actor.WebViewAttribute
 
HTMLEffigy - Class in ptolemy.actor.gui
An effigy for an HTML file.
HTMLEffigy(Workspace) - Constructor for class ptolemy.actor.gui.HTMLEffigy
Create a new effigy in the specified workspace with an empty string for its name.
HTMLEffigy(CompositeEntity, String) - Constructor for class ptolemy.actor.gui.HTMLEffigy
Create a new effigy in the given directory with the given name.
HTMLEffigyFactory - Class in ptolemy.actor.gui
A factory for creating new effigies for HTML pages.
HTMLEffigyFactory(Workspace) - Constructor for class ptolemy.actor.gui.HTMLEffigyFactory
Create a factory in the specified workspace.
HTMLEffigyFactory(CompositeEntity, String) - Constructor for class ptolemy.actor.gui.HTMLEffigyFactory
Create a factory with the given name and container.
HTMLExportable - Interface in ptolemy.vergil.basic
Interface for parameters and attribute indicating support for exporting an HTML file and supporting files.
htmlFile - Variable in class org.kepler.webview.actor.WebViewAttribute
 
HTMLImage - Class in ptolemy.vergil.basic.export.web
Attribute for inserting an image into a web page.
HTMLImage(NamedObj, String) - Constructor for class ptolemy.vergil.basic.export.web.HTMLImage
Create an instance of this parameter.
htmlOut - Variable in class org.sdm.spa.XSLTActor
String representation of the output of the transformation.
HTMLPathForFiles - Variable in class ptolemy.vergil.basic.ExportParameters
The path to use for accessing the file in the HTML code.
htmlRIO(ReportInstance) - Static method in class org.kepler.reporting.rio.RIORenderer
Deprecated.
 
HTMLText - Class in ptolemy.vergil.basic.export.web
Attribute for inserting HTML text into the page exported by Export to Web.
HTMLText(NamedObj, String) - Constructor for class ptolemy.vergil.basic.export.web.HTMLText
Create an instance of this parameter.
HTMLTextPosition - Class in ptolemy.vergil.basic.export.web
Parameter specifying the position into which to export HTML text.
HTMLTextPosition(NamedObj, String) - Constructor for class ptolemy.vergil.basic.export.web.HTMLTextPosition
Create an instance of this parameter.
HTMLViewer - Class in ptolemy.actor.gui
This class is a toplevel frame that can view HTML documents.
HTMLViewer() - Constructor for class ptolemy.actor.gui.HTMLViewer
Construct a blank viewer.
HTMLViewer(Tableau) - Constructor for class ptolemy.actor.gui.HTMLViewer
Construct an empty top-level frame managed by the specified tableau and the default status bar.
HTMLViewerTableau - Class in ptolemy.actor.gui
A tableau representing a rendered HTML view in a toplevel window.
HTMLViewerTableau(Effigy, String) - Constructor for class ptolemy.actor.gui.HTMLViewerTableau
Construct a new tableau for the model represented by the given effigy.
HTMLViewerTableau.Factory - Class in ptolemy.actor.gui
A factory that creates HTML viewer tableaux for Ptolemy models.
HTTP - Class in org.json
Convert an HTTP header to a JSONObject and back.
HTTP() - Constructor for class org.json.HTTP
 
HTTPTokener - Class in org.json
The HTTPTokener extends the JSONTokener to provide additional methods for the parsing of HTTP headers.
HTTPTokener(String) - Constructor for class org.json.HTTPTokener
Construct an HTTPTokener from a string.
HTVQApplet - Class in ptolemy.domains.sdf.demo.HTVQ
An applet that uses Ptolemy II SDF domain.
HTVQApplet() - Constructor for class ptolemy.domains.sdf.demo.HTVQ.HTVQApplet
 
HTVQEncode - Class in ptolemy.domains.sdf.lib.vq
This actor encodes a matrix using Hierarchical Table-Lookup Vector Quantization.
HTVQEncode(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.vq.HTVQEncode
Construct an actor in the specified container with the specified name.
HuffmanBasic - Class in ptolemy.actor.lib.comm
Given a probability distribution, generate the Huffman code book.
HuffmanBasic(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.comm.HuffmanBasic
Construct an actor with the given container and name.
HuffmanBasic.Node - Class in ptolemy.actor.lib.comm
A class that defines the node in binary tree that is used to construct the codebook of Huffman code.
huffmanCode - Variable in class ptolemy.actor.lib.comm.HuffmanBasic.Node
The huffman code of this node.
huffmanCodeBook - Variable in class ptolemy.actor.lib.comm.HuffmanBasic
A port that produces the Huffman code book generated based on the probability mass function.
HuffmanCoder - Class in ptolemy.actor.lib.comm
Given a probability distribution and alphabet, encode the input using Huffman code and send the result in booleans to the output port.
HuffmanCoder(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.comm.HuffmanCoder
Construct an actor with the given container and name.
HuffmanDecoder - Class in ptolemy.actor.lib.comm
Given a probability distribution and the corresponding alphabet, decode the input using Huffman code and send the result to the output port.
HuffmanDecoder(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.comm.HuffmanDecoder
Construct an actor with the given container and name.
hullFileName - Variable in class org.ecoinformatics.seek.gis.grass.GISHullActor
 
hullFileName - Variable in class org.ecoinformatics.seek.gis.grass.GISRasterActor
 
hullFileName - Variable in class org.ecoinformatics.seek.gis.java_gis.CVHull2Raster
The name of the Convex Hull file of data points.
hullFileName - Variable in class org.ecoinformatics.seek.gis.java_gis.GISHullActorJ
'hullFileName' is the name to be given to the hull point list file
hullFileResult - Variable in class org.ecoinformatics.seek.gis.grass.GISHullActor
 
hullFileResult - Variable in class org.ecoinformatics.seek.gis.java_gis.GISHullActorJ
'hullFileResult' is the output hull file name (same value as the 'hullFileName' but used as a trigger for output
humanReadableForm() - Method in class ptolemy.moml.unit.Bindings
A human readable form (more or less) of the bindings.
HybridModalDirector - Class in ptolemy.domains.continuous.kernel
An HybridModalDirector governs the execution of the discrete dynamics of a hybrid system model.
HybridModalDirector(CompositeEntity, String) - Constructor for class ptolemy.domains.continuous.kernel.HybridModalDirector
Construct a director in the given container with the given name.
hyperlinkUpdate(HyperlinkEvent) - Method in class org.kepler.workflowscheduler.gui.URLHyperLinkListener
 
hyperlinkUpdate(HyperlinkEvent, Configuration) - Static method in class ptolemy.actor.gui.HTMLAbout
Process an "about:" HyperlinkEvent.
hyperlinkUpdate(HyperlinkEvent) - Method in class ptolemy.actor.gui.HTMLViewer
React to a hyperlink being clicked on in the rendered HTML.
hyperlinkUpdate(HyperlinkEvent) - Method in class ptolemy.vergil.actor.DocViewer
Override the base class to react to links of the form #parentClass.
HyVisualApplication - Class in ptolemy.actor.gui.jnlp
A wrapper class that calls eventually calls ptolemy.vergil.VergilApplication for use with Java Network Launching Protocol (JNLP) aka Web Start.
HyVisualApplication() - Constructor for class ptolemy.actor.gui.jnlp.HyVisualApplication
 

I

I - Static variable in class ptolemy.math.Complex
A Complex number representing i.
I15dPanelBuilder - Class in com.jgoodies.forms.builder
A general purpose panel builder that uses the FormLayout to lay out JPanels.
I15dPanelBuilder(FormLayout, ResourceBundle) - Constructor for class com.jgoodies.forms.builder.I15dPanelBuilder
Constructs an instance of I15dPanelBuilder for the given layout.
I15dPanelBuilder(FormLayout, ResourceBundle, JPanel) - Constructor for class com.jgoodies.forms.builder.I15dPanelBuilder
Constructs an instance of I15dPanelBuilder for the given FormLayout and layout container.
I15dPanelBuilder(JPanel, FormLayout, ResourceBundle) - Constructor for class com.jgoodies.forms.builder.I15dPanelBuilder
icon - Variable in class org.kepler.reporting.rio.Item
 
icon - Variable in class org.mlc.swing.layout.ComponentDef
 
icon - Variable in class ptolemy.actor.gui.properties.Button
Icon for the button.
IconAttribute - Interface in ptolemy.kernel.util
A marker interface for an attribute that describes an icon.
iconClass - Variable in class org.mlc.swing.layout.ComponentDef
 
IconController - Class in ptolemy.vergil.basic
This class provides interaction with nodes that represent Ptolemy II objects that are represented on screen as icons, such as attributes and entities.
IconController(GraphController) - Constructor for class ptolemy.vergil.basic.IconController
Create a controller associated with the specified graph controller.
IconController.IconRenderer - Class in ptolemy.vergil.basic
An icon renderer.
IconLink - Class in ptolemy.vergil.basic.export.web
Attribute specifying a URI to link to from an icon when a model is exported to a web page.
IconLink(NamedObj, String) - Constructor for class ptolemy.vergil.basic.export.web.IconLink
Create an instance of this parameter.
IconListRenderer() - Constructor for class org.kepler.gui.ComponentLibraryTab.IconListRenderer
 
IconLoader - Interface in ptolemy.moml
Interface for loading icons.
IconMetadataHandler - Class in org.kepler.icon
An interface for a metadata handler to provide custom parsing of a NamedObj produced by ActorMetadata
IconMetadataHandler() - Constructor for class org.kepler.icon.IconMetadataHandler
def. const.
IconModel() - Constructor for class ptolemy.vergil.actor.ActorGraphModel.IconModel
 
IconRenderer() - Constructor for class ptolemy.vergil.basic.IconController.IconRenderer
 
IconScript - Class in ptolemy.vergil.basic.export.web
A parameter associating a JavaScript with an icon in model.
IconScript(NamedObj, String) - Constructor for class ptolemy.vergil.basic.export.web.IconScript
Create an instance of this parameter.
iconType - Variable in class org.kepler.monitor.MonitorAttribute
 
iconType - Variable in class org.kepler.monitor.MonitorManager
The icon type for all created monitor attributes
id - Variable in class org.geon.PolygonUtil
 
id - Variable in class org.kepler.objectmanager.data.DataObjectDescription
 
ID - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
id - Variable in class ptolemy.data.expr.SimpleNode
 
IDAttribute - Class in ptolemy.vergil.kernel.attributes
This attribute identifies the containing model, showing its name, base class, last modified date, author, and contributors information.
IDAttribute(Entity, String) - Constructor for class ptolemy.vergil.kernel.attributes.IDAttribute
Construct an attribute with the given name contained by the specified container.
IDCT(double[]) - Static method in class ptolemy.math.SignalProcessing
Return a new array of doubles that is the inverse, normalized DCT of the input array of doubles.
IDCT(double[], int) - Static method in class ptolemy.math.SignalProcessing
Return a new array of doubles that is the inverse, normalized DCT of the input array of doubles, using the specified order.
IDCT(double[], int, int) - Static method in class ptolemy.math.SignalProcessing
Return a new array of doubles that is the inverse DCT of the input array of doubles.
identifier - Variable in class ptolemy.actor.gui.Effigy
The identifier for the effigy.
identifier() - Method in class ptolemy.data.expr.PtParser
 
IDENTIFIERSERVICETYPE - Static variable in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
 
identifierSet() - Method in class ptolemy.data.expr.ExplicitScope
Return the list of variables within the scope.
identifierSet() - Method in class ptolemy.data.expr.NamedConstantsScope
Return the set of identifiers defined in this scope.
identifierSet() - Method in class ptolemy.data.expr.NestedScope
Return the list of identifiers within the scope.
identifierSet() - Method in interface ptolemy.data.expr.ParserScope
Return a list of names corresponding to the identifiers defined by this scope.
identifierSet() - Method in class ptolemy.data.expr.Variable.VariableScope
Return the set of identifiers within the scope.
identifierSet() - Method in class ptolemy.domains.modal.kernel.FSMActor.PortScope
Return the list of identifiers within the scope.
identity - Variable in class org.geon.Scp
The file path for userName's ssh identity file if the user wants to connect without having to enter the password all the time.
identity - Variable in class org.kepler.actor.ssh.SshSession
The string representation of the file path for the ssh identity file if the user wants to connect without having to enter the password all the time.
identity - Variable in class org.sdm.spa.Ssh2Exec
The string representation of the file path for userName's ssh identity file if the user wants to connect without having to enter the password all the time.
identity(int) - Static method in class ptolemy.math.ComplexMatrixMath
Return an new identity matrix with the specified dimension.
identity(int) - Static method in class ptolemy.math.DoubleMatrixMath
Return an new identity matrix with the specified dimension.
identity(int) - Static method in class ptolemy.math.FloatMatrixMath
Return an new identity matrix with the specified dimension.
identity(int) - Static method in class ptolemy.math.FractionMatrixMath
Return an new identity matrix with the specified dimension.
identity(int) - Static method in class ptolemy.math.IntegerMatrixMath
Return an new identity matrix with the specified dimension.
identity(int) - Static method in class ptolemy.math.LongMatrixMath
Return an new identity matrix with the specified dimension.
Identity - Static variable in class ptolemy.moml.unit.UnitLibrary
The Identity Unit, i.e. 1.0*<0, 0, ..., 0>
IDENTITY_CONVERSION - Static variable in class ptolemy.data.expr.CachedMethod
Identity conversion.
IdentityActor - Class in ptolemy.actor.test
An IdentityActor is a simple atomic actor that transfers the input token to the output.
IdentityActor(CompositeActor, String) - Constructor for class ptolemy.actor.test.IdentityActor
Create a new actor in the specified container with the specified name.
identityMatrixComplex(int) - Static method in class ptolemy.math.ComplexMatrixMath
Return an new identity matrix with the specified dimension.
identityMatrixDouble(int) - Static method in class ptolemy.math.DoubleMatrixMath
Return an new identity matrix with the specified dimension.
identityMatrixInt(int) - Static method in class ptolemy.math.IntegerMatrixMath
Return an new identity matrix with the specified dimension.
identityMatrixLong(int) - Static method in class ptolemy.math.LongMatrixMath
Return an new identity matrix with the specified dimension.
idLabelDims - Static variable in class org.kepler.gui.TabbedDialog
dims of "ID" label on dialog "general" tab
IDLE - Static variable in class org.kepler.monitor.MonitoredStatus.State
Value for an "idle" state.
IDLE - Static variable in class ptolemy.actor.Manager
Indicator that there is no currently active execution.
idMatches(KeplerLSID, NamedObj, boolean) - Static method in class org.kepler.moml.NamedObjId
Check the given NamedObj to see if it matches the search ID.
IdSizeMapForSeqFile - Class in org.camera.service
It reads the sequence file in Fasta format for a meta genome sample and outputs the map with id and sequence length.
IdSizeMapForSeqFile(CompositeEntity, String) - Constructor for class org.camera.service.IdSizeMapForSeqFile
 
idValueDims - Static variable in class org.kepler.gui.TabbedDialog
dims of "ID" value on dialog "general" tab
IFEXISTS - Static variable in class org.ecoinformatics.seek.dataquery.DBTablesGenerator
 
IFFT - Class in ptolemy.domains.sdf.lib
This actor calculates the inverse FFT of a complex input array.
IFFT(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.IFFT
Construct an actor with the given container and name.
IFFT(Complex[]) - Static method in class ptolemy.math.SignalProcessing
Return a new array of complex numbers which is the inverse FFT of an input array of complex numbers.
IFFT(Complex[], int) - Static method in class ptolemy.math.SignalProcessing
Return a new array of complex numbers which is the inverse FFT of an input array of complex numbers.
IFFTComplexOut(Complex[]) - Static method in class ptolemy.math.SignalProcessing
Return a new array of Complex's which is the inverse FFT of an input array of Complex's.
IFFTComplexOut(Complex[], int) - Static method in class ptolemy.math.SignalProcessing
Return a new array of Complex's which is the forward FFT of an input array of Complex's.
IFFTRealOut(Complex[]) - Static method in class ptolemy.math.SignalProcessing
Return a new array of doubles which is the real part of the inverse FFT of an input array of Complex's.
IFFTRealOut(Complex[], int) - Static method in class ptolemy.math.SignalProcessing
Return a new array of doubles which is the real part of the inverse FFT of an input array of Complex's.
IFFTRealOut(double[]) - Static method in class ptolemy.math.SignalProcessing
Return a new array of doubles which is the real part of the inverse FFT of an input array of doubles.
IFFTRealOut(double[], int) - Static method in class ptolemy.math.SignalProcessing
Return a new array of doubles which is the real part of the inverse FFT of an input array of doubles.
ignorableWhitespace(char[], int, int) - Method in class com.microstar.xml.demo.EventDemo
Handle ignorable whitespace by printing an event.
ignorableWhitespace(char[], int, int) - Method in class com.microstar.xml.demo.XmlApp
Handle ignorable whitespace.
ignorableWhitespace(char[], int, int) - Method in class com.microstar.xml.demo.XmlApplet
Handle ignorable whitespace.
ignorableWhitespace(char[], int, int) - Method in class com.microstar.xml.driver.SAXDriver
Implement com.microstar.xml.XmlHandler#ignorableWhitespace.
ignorableWhitespace(char[], int, int) - Method in class com.microstar.xml.HandlerBase
Handle ignorable whitespace.
ignorableWhitespace(char[], int, int) - Method in interface com.microstar.xml.XmlHandler
Ignorable whitespace.
ignorableWhitespace(char[], int, int) - Method in class org.kepler.reporting.rio.fop.tools.EasyGenerationContentHandlerProxy
 
ignorableWhitespace(char[], int, int) - Method in class ptolemy.configs.test.ValidatingXMLParser
 
ignoreCase - Variable in class ptolemy.actor.lib.string.StringCompare
The parameter to state whether to ignore case.
ignoreCase - Variable in class ptolemy.actor.lib.string.StringIndexOf
The parameter to state whether to ignore case.
IgnoreErrorHandler() - Constructor for class ptolemy.actor.gui.ConfigurationApplication.IgnoreErrorHandler
 
IGNOREFIRST - Static variable in class org.ecoinformatics.seek.dataquery.DBTablesGenerator
 
ignoreInvokeErrors - Variable in class org.sdm.spa.WSWithComplexTypes
If true, will not throw exception if error occurs invoking method.
ignoreIOExceptionReadErrors - Variable in class ptolemy.actor.lib.Exec
If true, ignore IOException errors from the subprocess.
IGuiAction - Interface in ptolemy.vergil.basic
A simple interface that allows to define actions for Vergil that operate on the model.
IIR - Class in ptolemy.actor.lib
This actor is an implementation of an infinite impulse response IIR filter.
IIR(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.IIR
Construct an actor with the given container and name.
IllegalActionException - Exception in ptolemy.kernel.util
Thrown on an attempt to perform an action that would result in an inconsistent or contradictory data structure if it were allowed to complete.
IllegalActionException(String) - Constructor for exception ptolemy.kernel.util.IllegalActionException
Construct an exception with a detail message.
IllegalActionException(Nameable) - Constructor for exception ptolemy.kernel.util.IllegalActionException
Construct an exception with a detail message that is only the name of the argument.
IllegalActionException(Nameable, String) - Constructor for exception ptolemy.kernel.util.IllegalActionException
Construct an exception with a detail message that includes the name of the first argument.
IllegalActionException(Nameable, Throwable, String) - Constructor for exception ptolemy.kernel.util.IllegalActionException
Construct an exception with a detail message that includes the name of the first argument.
IllegalActionException(Nameable, Nameable) - Constructor for exception ptolemy.kernel.util.IllegalActionException
Construct an exception with a detail message that consists of only the names of the object1 and object2 arguments.
IllegalActionException(Nameable, Nameable, String) - Constructor for exception ptolemy.kernel.util.IllegalActionException
Construct an exception with a detail message that includes the names of the first two arguments plus the third argument string.
IllegalActionException(Nameable, Nameable, Throwable, String) - Constructor for exception ptolemy.kernel.util.IllegalActionException
Construct an exception with a detail message that includes the names of the first two arguments plus the third argument string.
IllegalLSIDAssignmentException - Exception in org.ecoinformatics.seek.sms
 
IllegalLSIDAssignmentException(String) - Constructor for exception org.ecoinformatics.seek.sms.IllegalLSIDAssignmentException
Constructor for the IllegalLSIDAssignmentException object
IllegalLSIDException - Exception in org.ecoinformatics.seek.sms
 
IllegalLSIDException(String) - Constructor for exception org.ecoinformatics.seek.sms.IllegalLSIDException
Constructor for the IllegalLSIDException object
imag - Variable in class ptolemy.math.Complex
The imaginary part.
imag(Complex) - Static method in class ptolemy.math.Complex
Return the imaginary part of the specified complex number.
imag(double) - Static method in class ptolemy.math.Complex
Return the imaginary part of the specified real number, which is 0.0.
IMAGE - Static variable in class org.kepler.reporting.rio.StaticReportItemImage
 
image - Variable in class ptolemy.data.expr.Token
The string image of the token.
image - Variable in class ptolemy.moml.unit.Token
The string image of the token.
ImageAttribute - Class in ptolemy.vergil.kernel.attributes
This is an attribute that is rendered as an image.
ImageAttribute(NamedObj, String) - Constructor for class ptolemy.vergil.kernel.attributes.ImageAttribute
Construct an attribute with the given name contained by the specified container.
imageColumns - Variable in class ptolemy.domains.sdf.lib.vq.ImagePartition
The width of the input matrices.
imageColumns - Variable in class ptolemy.domains.sdf.lib.vq.ImageSequence
The number of columns in each image.
imageColumns - Variable in class ptolemy.domains.sdf.lib.vq.ImageUnpartition
The width of the input matrices.
ImageComponent - Class in org.kepler.reporting.rio.gui
This class demonstrates how to load an Image from an external file
ImageComponent(String) - Constructor for class org.kepler.reporting.rio.gui.ImageComponent
 
ImageContrast - Class in ptolemy.domains.sdf.lib.vq
Change the contrast of an image.
ImageContrast(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.vq.ImageContrast
Construct an actor with the given container and name.
ImageDisplay - Class in ptolemy.actor.lib.image
Display an image on the screen using the ptolemy.media.Picture class.
ImageDisplay(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.image.ImageDisplay
Construct an actor with the given container and name.
ImageDisplay - Class in ptolemy.domains.sdf.lib.vq
Display an image on the screen using the ptolemy.media.Picture class.
ImageDisplay(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.vq.ImageDisplay
Construct an actor with the given container and name.
ImageDisplayInterface - Interface in ptolemy.actor.lib.image
Interface encapsulating platform dependent code of the ImageDisplay from the platform independent parts.
ImageDisplayInterface - Interface in ptolemy.domains.sdf.lib.vq
Interface encapsulating platform dependent code of the ptolemy.domains.sdf.lib.vq.ImageDisplay from the platform independent parts.
ImageDisplayJavaSE - Class in ptolemy.actor.lib.image
ImageDisplayJavaSE is the implementation of the ImageDisplayInterface that uses AWT and Swing classes.
ImageDisplayJavaSE() - Constructor for class ptolemy.actor.lib.image.ImageDisplayJavaSE
 
ImageDisplayJavaSE - Class in ptolemy.domains.sdf.lib.vq
ImageDisplayJavaSE is the implementation of the ImageDisplayInterface that uses AWT and Swing classes.
ImageDisplayJavaSE() - Constructor for class ptolemy.domains.sdf.lib.vq.ImageDisplayJavaSE
 
ImageDisplayJavaSE.ImageWindow - Class in ptolemy.actor.lib.image
Version of TableauFrame that removes its association with the ImageDisplay upon closing, and also records the size of the display.
ImageExportable - Interface in ptolemy.gui
Interface indicating support for exporting an image.
imageFormat - Variable in class ptolemy.vergil.basic.export.web.WebExportParameters
The image format to use, which can be one of "gif" (the default), "png", or "jpg".
imageFormat - Variable in class ptolemy.vergil.basic.ExportParameters
The image format to use, which can be one of "gif" (the default), "png", or "jpg".
ImageIcon - Class in ptolemy.vergil.icon
An icon that displays a specified java.awt.Image.
ImageIcon(NamedObj, String) - Constructor for class ptolemy.vergil.icon.ImageIcon
Create a new icon with the given name in the given container.
ImagePanel - Class in org.kepler.reporting.gui
 
ImagePanel(Image) - Constructor for class org.kepler.reporting.gui.ImagePanel
 
ImagePartition - Class in ptolemy.domains.sdf.lib.vq
Partition an image into smaller subimages.
ImagePartition(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.vq.ImagePartition
Construct an actor in the specified container with the specified name.
imagePosition - Variable in class ptolemy.vergil.basic.export.web.HTMLImage
Parameter specifying the position into which to export the image.
ImageReader - Class in ptolemy.actor.lib.image
This actor reads an Image from a FileParameter, and outputs it as an AWTImageToken.
ImageReader(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.image.ImageReader
Construct an actor with the given container and name.
ImageRotate - Class in ptolemy.actor.lib.image
This actor reads an ObjectToken that is a java.awt.Image from the input, rotates it a certain number of degrees and writes the resulting image to the output port as an ObjectToken that is a java.awt.Image.
ImageRotate(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.image.ImageRotate
Construct an actor with the given container and name.
imageRows - Variable in class ptolemy.domains.sdf.lib.vq.ImagePartition
The height of the input matrices.
imageRows - Variable in class ptolemy.domains.sdf.lib.vq.ImageSequence
The number of rows in each image.
imageRows - Variable in class ptolemy.domains.sdf.lib.vq.ImageUnpartition
The height of the input matrices.
IMAGES_DIR - Static variable in class org.kepler.reporting.gui.ReportDesignerPanel
 
ImageSequence - Class in ptolemy.domains.sdf.lib.vq
Load a sequence of binary images from files, and create a sequence of IntMatrixTokens from them.
ImageSequence(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.vq.ImageSequence
Construct an actor with the given container and name.
ImageTableau - Class in ptolemy.actor.lib.image
A tableau representing an image displayed in a top-level window.
ImageTableau(Effigy, String) - Constructor for class ptolemy.actor.lib.image.ImageTableau
Construct a new tableau for the model represented by the given effigy.
ImageTableau(Effigy, String, TableauFrame) - Constructor for class ptolemy.actor.lib.image.ImageTableau
Construct a new tableau for the model represented by the given effigy, using the specified frame.
ImageTableau(Effigy, String, TableauFrame, int, int) - Constructor for class ptolemy.actor.lib.image.ImageTableau
Construct a new tableau for the model represented by the given effigy, using the specified frame.
ImageTableau.Factory - Class in ptolemy.actor.lib.image
A factory that creates a token tableau.
ImageToken - Class in ptolemy.data
An abstract class that all tokens which encapsulate images should extend.
ImageToken() - Constructor for class ptolemy.data.ImageToken
Construct an empty token.
ImageTokenEffigy - Class in ptolemy.actor.gui
An effigy for a file that contains an image.
ImageTokenEffigy(Workspace) - Constructor for class ptolemy.actor.gui.ImageTokenEffigy
Create a new effigy in the specified workspace with an empty string for its name.
ImageTokenEffigy(CompositeEntity, String) - Constructor for class ptolemy.actor.gui.ImageTokenEffigy
Create a new effigy in the given directory with the given name.
ImageTokenEffigy.Factory - Class in ptolemy.actor.gui
A factory for creating new effigies.
ImageToString - Class in ptolemy.actor.lib.conversions
Convert an AWT Image to a base-64 String.
ImageToString(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.conversions.ImageToString
Construct an actor with the given container and name.
ImageToString - Class in ptolemy.actor.lib.image
This actor reads an ObjectToken that is a java.awt.Image from the input and writes information about the image to the output as a StringToken.
ImageToString(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.image.ImageToString
Construct an actor with the given container and name.
ImageUnpartition - Class in ptolemy.domains.sdf.lib.vq
Combine subimages into a larger image.
ImageUnpartition(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.vq.ImageUnpartition
Construct an actor in the specified container with the specified name.
imageUpdate(Image, int, int, int, int, int) - Method in class ptolemy.vergil.icon.ImageIcon
This method, which is required by the ImageObserver interface, is called if something has changed in a background loading of the image.
imageURLTemplate - Variable in class ptolemy.domains.sdf.lib.vq.ImageSequence
The image filename templates.
ImageUtil - Class in org.kepler.reporting.rio.util
 
ImageUtil() - Constructor for class org.kepler.reporting.rio.util.ImageUtil
 
ImageWindow() - Constructor for class ptolemy.actor.lib.image.ImageDisplayJavaSE.ImageWindow
Construct an empty window.
imagParts(Complex[]) - Static method in class ptolemy.math.ComplexArrayMath
Return a new array of doubles with the imaginary parts of the array of complex numbers.
imagParts(Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new matrix that is formed by taking the imaginary parts of the complex numbers in the argument matrix.
immediate - Variable in class ptolemy.domains.modal.kernel.Transition
Parameter specifying whether this transition is immediate.
implementsStrictActorSemantics() - Method in class ptolemy.actor.Director
Return true if this director assumes and exports the strict actor semantics, as described in this paper: A.
implementsStrictActorSemantics() - Method in class ptolemy.actor.sched.FixedPointDirector
Return true, indicating that this director assumes and exports the strict actor semantics, as described in this paper: A.
implementsStrictActorSemantics() - Method in class ptolemy.domains.modal.kernel.FSMDirector
Return true if all state refinements have directors that implement the strict actor semantics.
ImportAttribute - Class in ptolemy.moml
Deprecated.
The 'import' MoML element is deprecated, use the 'source' attribute instead.
ImportAttribute(NamedObj, String) - Constructor for class ptolemy.moml.ImportAttribute
Deprecated.
Construct an attribute with the specified container and name.
importDesignPattern() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Import a design pattern into the current design.
IMPORTED_ROW_COLOR - Static variable in class org.kepler.workflowrunmanager.WRMDefaults
 
IMPORTED_ROW_SELECTED_COLOR - Static variable in class org.kepler.workflowrunmanager.WRMDefaults
 
importLibrary(File, Frame, Configuration) - Static method in class ptolemy.vergil.actor.ActorGraphFrame
Import a library by first opening a file chooser dialog and then importing the specified library.
ImportModuleDependenciesAction - Class in org.kepler.gui.kar
This action opens the ModuleManager for downloading new modules that are specified in the KAR dependencies.
ImportModuleDependenciesAction(TableauFrame) - Constructor for class org.kepler.gui.kar.ImportModuleDependenciesAction
Constructor
ImportModuleDependenciesAction.ImportChoice - Enum in org.kepler.gui.kar
The user choice when dealing with a KAR with missing dependencies.
importProvenance(String, boolean) - Static method in class org.kepler.provenance.manager.ProvenanceManager
Import provenance from a KAR file.
imports - Variable in class org.mlc.swing.layout.ComponentDef
 
importSemanticAnnotation(String, Entity) - Static method in class org.kepler.sms.SMSServices
 
IMPOSSIBLE_CONVERSION - Static variable in class ptolemy.data.expr.CachedMethod
Impossible argument conversion.
impulse - Variable in class ptolemy.domains.continuous.kernel.ContinuousIntegrator
The impulse input port.
impulse - Variable in class ptolemy.domains.continuous.lib.Derivative
The impulse output port.
IN - Static variable in class com.jgoodies.forms.layout.ConstantSize
 
in - Variable in class org.kepler.ddp.actor.pattern.DDPDataSink
The data to be written.
in - Variable in class org.kepler.ddp.actor.pattern.SingleInputPatternActor
Data input.
in - Variable in class org.kepler.ddp.actor.pattern.stub.StubSourceActor
Input port for key-value pairs.
in - Variable in class org.kepler.spark.mllib.CreateLabeledPoint
Input file name.
in - Variable in class org.kepler.spark.mllib.CreateVectorRDD
The input file name.
in - Variable in class org.kepler.spark.mllib.ExtractColumns
The input JavaRDD dataset.
in - Variable in class org.kepler.spark.mllib.RemoveNulls
The input file name.
in1 - Variable in class ptolemy.domains.de.test.SuperdenseTimeTest
The inputs and output.
in2 - Variable in class org.kepler.ddp.actor.pattern.DualInputPatternActor
Second data input.
in2 - Variable in class org.kepler.ddp.actor.pattern.stub.CoGroupInput
The input for key-value pairs.
in2 - Variable in class org.kepler.ddp.actor.pattern.stub.CrossInput
Second input port for key-value pairs.
in2 - Variable in class org.kepler.ddp.actor.pattern.stub.MatchInput
The second input port of key-value pairs.
in2 - Variable in class ptolemy.domains.de.test.SuperdenseTimeTest
The inputs and output.
in2KeyValueTypes - Variable in class org.kepler.ddp.actor.pattern.DualInputPatternActor
The input 2 key value types.
in3 - Variable in class ptolemy.domains.de.test.SuperdenseTimeTest
The inputs and output.
IN_COVERAGE - Static variable in class org.kepler.gis.actor.calc.JiffleProcess
 
IN_DEST_NAME - Static variable in class org.kepler.gis.actor.calc.JiffleProcess
 
IN_OUTPUT_TYPE - Static variable in class org.kepler.gis.actor.calc.JiffleProcess
 
IN_SCRIPT - Static variable in class org.kepler.gis.actor.calc.JiffleProcess
 
IN_SOURCE_NAME - Static variable in class org.kepler.gis.actor.calc.JiffleProcess
 
inApplet() - Static method in class ptolemy.util.StringUtilities
Return true if we are in an applet.
inBlastResultsPort - Variable in class org.camera.service.AverageGenomeSizeParserV2
Input port with Blast Results
inBuf - Variable in class ptolemy.data.expr.SimpleCharStream
 
inBuf - Variable in class ptolemy.moml.unit.SimpleCharStream
 
INCH - Static variable in class com.jgoodies.forms.layout.ConstantSize
 
inchAsPixel(double, Component) - Static method in class com.jgoodies.forms.layout.Sizes
Converts Inches and returns pixels using the specified resolution.
inchAsPixel(double, Component) - Method in class com.jgoodies.forms.util.AbstractUnitConverter
Converts Inches and returns pixels using the specified resolution.
inchAsPixel(double, int) - Method in class com.jgoodies.forms.util.AbstractUnitConverter
Converts Inches and returns pixels using the specified resolution.
inchAsPixel(double, Component) - Method in interface com.jgoodies.forms.util.UnitConverter
Converts Inches and returns pixels using the specified resolution.
incidentEdgeCount(Node) - Method in class ptolemy.graph.Graph
Return the number of edges that are incident to a specified node.
incidentEdges(Node) - Method in class ptolemy.graph.Graph
Return the set of incident edges for a specified node.
include - Variable in class ptolemy.vergil.basic.export.web.DefaultIconLink
Specification of whether to provide the link for Attributes, Entities, or both.
include - Variable in class ptolemy.vergil.basic.export.web.DefaultIconScript
Specification of whether to provide the default behavior for Attributes, Entities, or both.
include - Variable in class ptolemy.vergil.basic.export.web.DefaultTitle
Specification of whether to provide the title for Attributes, Entities, or both.
includeAttributes - Variable in class org.kepler.gui.WorkflowOutlineTreeModel
 
includeDecorations - Variable in class ptolemy.vergil.basic.layout.AbstractLayoutConfiguration
Whether to include unconnected nodes such as comments.
includeFires - Variable in class org.kepler.profiling.gui.WorkflowOutlineTreeActorFireModel
 
includeInSave - Variable in class org.kepler.objectmanager.repository.Repository
 
includeInSave() - Method in class org.kepler.objectmanager.repository.Repository
If the repository is included in saving process
includeInSearch - Variable in class org.kepler.objectmanager.repository.Repository
 
includeInSearch() - Method in class org.kepler.objectmanager.repository.Repository
 
includeJars - Variable in class org.kepler.ddp.director.DDPDirector
A comma-separated list of jar files to include.
includeName - Variable in class ptolemy.vergil.icon.CopyCatIcon
If true, include the name of the copied actor in the icon if the name is included normally in its icon.
includeOpaqueContents - Variable in class ptolemy.data.expr.ConstraintMonitor
If true, then this decorator decorates entities within opaque composite actors.
includePorts - Variable in class org.kepler.gui.WorkflowOutlineTreeModel
 
includeRelations - Variable in class org.kepler.gui.WorkflowOutlineTreeModel
 
includes(Object) - Method in class ptolemy.actor.util.CalendarQueue
Return true if the specified entry is in the queue.
includes(Nameable) - Method in class ptolemy.kernel.util.NamedList
Return true if the specified object is on the list.
includeTransparents - Variable in class ptolemy.data.expr.ConstraintMonitor
If true, then this decorator decorates transparent composite entities.
inCol - Variable in class org.kepler.spark.mllib.StandardizeApply
Name of the input vector column, which contains raw data
inColName - Variable in class org.kepler.spark.mllib.Standardize
Columns to ignore (drop) before standardization.
incomingPort - Variable in class ptolemy.domains.modal.kernel.State
The port linking incoming transitions.
INCOMPARABLE - Static variable in interface ptolemy.actor.util.Dependency
Return value of compareTo() if this is incomparable to the argument.
INCOMPARABLE - Static variable in interface ptolemy.graph.CPO
One of the return values of compare, indicating that the two elements are incomparable.
INCOMPATIBLE - Static variable in class org.kepler.sms.SMSServices
 
increaseMajor() - Method in class org.ptolemy.commons.ThreeDigitVersionSpecification
Return a new version spec with increased major digit.
increaseMicro() - Method in class org.ptolemy.commons.ThreeDigitVersionSpecification
Return a new version spec with increased micro digit.
increaseMinor() - Method in class org.ptolemy.commons.ThreeDigitVersionSpecification
Return a new version spec with increased minor digit.
increment(String) - Method in class org.json.JSONObject
Increment a property of a JSONObject.
increment - Variable in class ptolemy.actor.lib.Counter
The increment port.
increment - Variable in class ptolemy.component.test.Counter
The increment port.
incrementLSIDOnWorkflowChange(boolean) - Static method in class org.kepler.moml.NamedObjId
Set if workflow changes should increment LSIDs.
incrementRevision() - Method in class org.kepler.objectmanager.lsid.KeplerLSID
increment the revision number by 1.
incrVersion() - Method in class ptolemy.kernel.util.Workspace
Increment the version number by one.
inData - Variable in class org.kepler.spark.mllib.ConvertColumns
The input DataFrame
inData - Variable in class org.kepler.spark.mllib.DatasetToJson
Dataset input
inData - Variable in class org.kepler.spark.mllib.DropColumns
Dataset input
inData - Variable in class org.kepler.spark.mllib.KMeansApply
Dataframe input
inData - Variable in class org.kepler.spark.mllib.RemoveRowsWithNulls
Incoming DataFrame
inData - Variable in class org.kepler.spark.mllib.SantaAnaDetect
Dataframe input
inData - Variable in class org.kepler.spark.mllib.SantaAnaIdentify
Input data as JSON Array (string format).
inData - Variable in class org.kepler.spark.mllib.Standardize
Input DataFrame.
inData - Variable in class org.kepler.spark.mllib.StandardizeApply
Dataframe input
inData - Variable in class org.kepler.spark.mllib.SVMKModel
Input data: RDD of LabeledPoint.
inData - Variable in class org.kepler.spark.mllib.VectorAssemble
Input DataFrame.
inDatabasePort - Variable in class org.camera.service.AverageGenomeSizeParserV2
Input port for Database
inDataFile - Variable in class com.numericsolutions.geomodeltools.DensityGridActor
 
index - Variable in class org.geon.DiagramTransitions
A reference to the initial diagram.
index(XMLUIP.AdapterNode) - Method in class org.sdm.spa.gui.XMLUIP.AdapterNode
 
index - Variable in class ptolemy.actor.lib.ArrayElement
The index into the input array.
index - Variable in class ptolemy.actor.lib.ArrayMaximum
The port producing the index of the largest element.
index - Variable in class ptolemy.actor.lib.ArrayMinimum
The port producing the index of the largest element.
index - Variable in class ptolemy.actor.lib.ArrayUpdate
The index into the input array at which to set the new value.
index - Variable in class ptolemy.actor.lib.comm.HadamardCode
Index of the code to generate.
index() - Method in class ptolemy.actor.util.SuperdenseTime
Return the index.
indexes() - Method in class org.kepler.util.sql.Table
Get the indexes.
indexes - Variable in class ptolemy.actor.lib.Interpolator
The indexes at which the specified values will be produced.
indexes - Variable in class ptolemy.actor.lib.Pulse
The indexes at which the specified values will be produced.
indexInArray - Variable in class ptolemy.actor.lib.comm.HuffmanBasic.Node
The corresponding index in the pmf array of this node.
indexOf(Object) - Method in class ptolemy.actor.util.TotallyOrderedSet
Return the index of the given object.
indexOf(Object) - Method in class ptolemy.graph.LabeledList
Return the label in this list of the specified element; return -1 if the element is null or this list does not contain the element.
indexValue() - Method in class ptolemy.actor.util.SuperdenseDependency
Return the index value of this dependency.
InDir - Variable in class org.sdm.spa.ProcessFileRT
 
inDomain(Object) - Method in class ptolemy.graph.mapping.MapMapping
Return true if the given object is a key in the Map that is associated with this mapping.
inDomain(Object) - Method in interface ptolemy.graph.mapping.Mapping
Returns true if a given object is in the domain of the mapping.
inDomain(Object) - Method in class ptolemy.graph.mapping.ToDoubleMapMapping
Return true if the given object is in the domain of this Mapping.
inDomain(Object) - Method in class ptolemy.graph.mapping.ToIntMapMapping
Return true if the given object is in the domain of this Mapping.
inEdges(Object) - Method in class ptolemy.vergil.actor.ActorGraphModel.ExternalPortModel
Return an iterator over the edges coming into the given node.
inEdges(Object) - Method in class ptolemy.vergil.actor.ActorGraphModel.IconModel
Return an iterator over the edges coming into the given node.
inEdges(Object) - Method in class ptolemy.vergil.actor.ActorGraphModel.PortModel
Return an iterator over the edges coming into the given node.
inEdges(Object) - Method in class ptolemy.vergil.actor.ActorGraphModel.VertexModel
Return an iterator over the edges coming into the given node.
inEdges(Object) - Method in class ptolemy.vergil.kernel.AttributeNodeModel
Return an iterator over the edges coming into the given node.
inEdges(Object) - Method in class ptolemy.vergil.modal.FSMGraphModel.PortModel
Return an iterator over the edges coming into the given node.
inEdges(Object) - Method in class ptolemy.vergil.modal.FSMGraphModel.StateModel
Return an iterator over the edges coming into the given node.
Inequality - Class in ptolemy.graph
An inequality over a CPO.
Inequality(InequalityTerm, InequalityTerm) - Constructor for class ptolemy.graph.Inequality
Construct an inequality.
inequalityList() - Method in exception ptolemy.actor.TypeConflictException
Return a list of Inequality or InequalityTerm instances where type conflicts occurred.
InequalitySolver - Class in ptolemy.graph
An algorithm to solve a set of inequality constraints.
InequalitySolver(CPO) - Constructor for class ptolemy.graph.InequalitySolver
Construct an inequality solver.
InequalityTerm - Interface in ptolemy.graph
An interface for a term in an inequality over a CPO.
INFERING_WIDTHS - Static variable in class ptolemy.actor.Manager
Indicator that width inference is being done.
inferringWidths() - Method in class ptolemy.actor.CompositeActor
Determine whether widths are currently being inferred or not.
inferringWidths() - Method in class ptolemy.actor.RelationWidthInference
Determine whether widths are currently being inferred or not.
inferType(String) - Static method in class ptolemy.data.expr.UtilityFunctions
Infer the type of the given string as an expression in the expression language.
inferTypes(ASTPtRootNode) - Method in class ptolemy.data.expr.ParseTreeTypeInference
Infer the type of the parse tree with the specified root node.
inferTypes(ASTPtRootNode, ParserScope) - Method in class ptolemy.data.expr.ParseTreeTypeInference
Infer the type of the parse tree with the specified root node using the specified scope to resolve the values of variables.
inferValueFromContext(String) - Method in class ptolemy.actor.parameters.SharedParameter
Infer the value of this parameter from the container context.
inferValueFromContext(String) - Method in class ptolemy.actor.parameters.test.TestSharedParameter
Infer the value of this parameter from the container context.
inferValueFromContextCount - Variable in class ptolemy.actor.parameters.test.TestSharedParameter
 
inferWidths() - Method in class ptolemy.actor.CompositeActor
Infer the width of the relations for which no width has been specified yet.
inferWidths() - Method in class ptolemy.actor.RelationWidthInference
Infer the width of the relations for which no width has been specified yet.
infile - Variable in class org.sdm.spa.DelayStreamToASpecificElement
File info record as outputted by org.kepler.actor.io.SshDirectoryList: {name=<filename>, size=<size in bytes>, date=<date in UTC seconds>}
infileHandle - Variable in class org.sdm.spa.CommandLine
 
infileHandle - Variable in class org.sdm.spa.CommandLineExec
This is an optional port.
inFileMap - Variable in class org.camera.service.AverageGenomeSizeParserV2
Input port for the File map
inFileName - Variable in class org.ecoinformatics.seek.gis.grass.GrassImportActor
 
inFilepath - Variable in class org.kepler.spark.mllib.KMeansApply
Path to model file
inFilepath - Variable in class org.kepler.spark.mllib.StandardizeApply
Path to model file
INFINITE_CAPACITY - Static variable in class ptolemy.actor.QueueReceiver
Used to indicate that the size of this queue receiver is infinite.
INFINITE_CAPACITY - Static variable in class ptolemy.actor.util.FIFOQueue
Used to indicate that the size of the queue or the history queue is infinite.
INFINITE_CAPACITY - Static variable in class ptolemy.domains.sdf.kernel.ArrayFIFOQueue
Used to indicate that the size of the queue or the history queue is infinite.
INFINITE_CAPACITY - Static variable in class ptolemy.domains.sdf.kernel.SDFReceiver
A constant indicating that the capacity of the receiver is unbounded.
info - Variable in class ptolemy.media.Audio
Four byte info field.
informListeners(NamedOntClass, NamedObj, boolean, boolean) - Method in class org.kepler.tagging.gui.ExistingTagsPanel
 
Inhibit - Class in ptolemy.domains.de.lib
Output a received input token, unless the inhibit port receives a token at the same time.
Inhibit(CompositeEntity, String) - Constructor for class ptolemy.domains.de.lib.Inhibit
Construct an actor with the given container and name.
inhibit - Variable in class ptolemy.domains.de.lib.Inhibit
The inhibit port, which has type Token.
init() - Method in class com.microstar.xml.demo.XmlApplet
Initialise the applet the first time it runs.
init() - Method in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
 
init() - Method in class org.ecoinformatics.seek.querybuilder.QBApplet
Initializes the applet with the QBApp
init() - Method in class org.kepler.gui.AddRemoteRepositoryDialog
 
init() - Method in class org.kepler.gui.LibrarySearcher
provides any initialization needed prior to searching.
init() - Method in class org.kepler.gui.MenuMapper
 
init() - Method in class org.kepler.gui.OntLibrarySearcher
Deprecated.
provides any initialization needed prior to searching.
init() - Method in class org.kepler.gui.SearchUIJPanel
Initialize the search panel.
init() - Method in class org.kepler.gui.SimpleLibrarySearcher
pre-reads the library so searches will be faster.
init(String) - Method in class org.kepler.job.JobSupportCondor
 
init(String) - Method in class org.kepler.job.JobSupportFork
 
init(String) - Method in class org.kepler.job.JobSupportLoadLeveler
 
init(String) - Method in class org.kepler.job.JobSupportLSF
 
init(String) - Method in class org.kepler.job.JobSupportMoab
 
init(String) - Method in class org.kepler.job.JobSupportNCCS
 
init(String) - Method in class org.kepler.job.JobSupportPBS
 
init(String) - Method in class org.kepler.job.JobSupportSGE
 
init(String) - Method in class org.kepler.job.JobSupportSLURM
 
init() - Method in class org.kepler.objectmanager.repository.EcogridRepositoryLibrarySearcher
provides any initialization needed prior to searching.
init(TypedAtomicActor) - Method in class ptolemy.actor.gui.AbstractPlaceableJavaSE
Initialize the specified actor with window properties and pane size attributes.
init() - Method in class ptolemy.actor.gui.PtolemyApplet
Initialize the applet.
init - Variable in class ptolemy.actor.lib.Accumulator
The value produced by the actor on its first iteration.
init - Variable in class ptolemy.actor.lib.gem5.Gem5Wrapper
The value produced by the ramp on its first iteration.
init(Display) - Method in interface ptolemy.actor.lib.gui.DisplayInterface
Set the number of rows for the text area.
init(Display) - Method in class ptolemy.actor.lib.gui.DisplayJavaSE
Set the number of rows for the text area.
init(PlotterBase) - Method in interface ptolemy.actor.lib.gui.PlotterBaseInterface
Initialize the implementation.
init(PlotterBase) - Method in class ptolemy.actor.lib.gui.PlotterBaseJavaSE
Initialize the implementation.
init(Sink) - Method in interface ptolemy.actor.lib.gui.TextFieldContainerInterface
Initiate .
init(Sink) - Method in class ptolemy.actor.lib.gui.TextFieldContainerJavaSE
Initiate.
init(ImageDisplay) - Method in interface ptolemy.actor.lib.image.ImageDisplayInterface
Initialize an object.
init(ImageDisplay) - Method in class ptolemy.actor.lib.image.ImageDisplayJavaSE
Initialize an object.
init - Variable in class ptolemy.actor.lib.Ramp
The value produced by the ramp on its first iteration.
init() - Method in class ptolemy.gui.BasicJApplet
Initialize the applet.
init() - Method in class ptolemy.gui.test.GraphicalMessageHandlerApplet
Initialize the applet.
init() - Method in class ptolemy.plot.compat.PxgraphApplet
Initialize the applet.
init() - Method in class ptolemy.plot.demo.HistogramDemo
Initialize the applet.
init() - Method in class ptolemy.plot.demo.PlotDemo
Initialize the applet.
init() - Method in class ptolemy.plot.demo.PlotFourierSeries
Initialize the applet.
init() - Method in class ptolemy.plot.PlotApplet
Initialize the applet.
init() - Method in class ptolemy.plot.PlotBox
Deprecated. 
init() - Method in interface ptolemy.plot.PlotBoxInterface
Deprecated. 
init() - Method in class ptolemy.plot.plotml.EditablePlotMLApplet
Initialize the applet.
init() - Method in class ptolemy.vergil.VergilApplet
Initialize the applet.
init_apstd - Variable in class org.eol.WmsdActor
 
initAnotatedPTree() - Method in class org.kepler.gui.AnnotatedPTree
 
initCheckBoxes() - Method in class org.kepler.gui.component.SearchConfigurationFrame
 
initControls() - Method in class org.kepler.gui.component.SearchConfigurationFrame
Initialize the control buttons.
initControls() - Method in class org.kepler.gui.PreferencesFrame
Initialize the control buttons.
initial - Variable in class ptolemy.actor.lib.gui.MonitorValue
The initial value to be displayed.
INITIAL_OFFSET - Static variable in class ptolemy.vergil.basic.RelativeLocation
The initial offset for new relative locatable objects.
Initializable - Interface in ptolemy.actor
This interface defines a subset of the action methods for initialization and wrapup.
InitializableAction - Interface in org.kepler.gui
An interface for actions that must be initialized by MenuMapper after being constructed.
initializationMode - Variable in class org.kepler.spark.mllib.KMeansClustering
The initialization mode for KMeans
initializationMode - Variable in class org.kepler.spark.mllib.KMeansModel
 
initialize() - Method in class com.numericsolutions.geomodeltools.DensityGridActor
 
initialize() - Method in class org.ecoinformatics.seek.backprop.BackProp
 
initialize() - Method in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreDataSource
Initialize the actor prior to running in the workflow.
initialize() - Method in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource
Initialize the actor prior to running in the workflow.
initialize() - Method in class org.ecoinformatics.seek.garp.GarpAlgorithm
 
initialize() - Method in class org.ecoinformatics.seek.garp.GarpPrediction
 
initialize() - Method in class org.ecoinformatics.seek.garp.GarpPresampleLayers
 
initialize() - Method in class org.ecoinformatics.seek.gis.gdal.GDALTranslateActor
Initialize
initialize() - Method in class org.ecoinformatics.seek.gis.gdal.GDALWarpActor
Initialize
initialize() - Method in class org.ecoinformatics.seek.gis.grass.GISBufferActor
 
initialize() - Method in class org.ecoinformatics.seek.gis.grass.GISHullActor
 
initialize() - Method in class org.ecoinformatics.seek.gis.grass.GISRasterActor
 
initialize() - Method in class org.ecoinformatics.seek.gis.grass.GrassExportActor
 
initialize() - Method in class org.ecoinformatics.seek.gis.grass.GrassImportActor
 
initialize() - Method in class org.ecoinformatics.seek.gis.java_gis.AddGrids
 
initialize() - Method in class org.ecoinformatics.seek.gis.java_gis.CVHull2Raster
 
initialize() - Method in class org.ecoinformatics.seek.gis.java_gis.GISHullActorJ
 
initialize() - Method in class org.ecoinformatics.seek.gis.java_gis.MergeGrids
 
initialize(DBWhereIFace) - Method in class org.ecoinformatics.seek.querybuilder.DBWhereModel
Initialize it by clearing everything and building it from the root where object
initialize() - Method in class org.ecoinformatics.seek.R.RExpression
 
initialize() - Method in class org.ecoinformatics.seek.R.RExpression2
 
initialize() - Method in class org.ecoinformatics.seek.sms.AnnotationEngine
Reload the ontology and annotation information.
initialize() - Method in class org.ecoinformatics.seek.sms.OntologyCatalog
Description of the Method
initialize() - Method in class org.eol.WmsdActor
initialize
initialize() - Method in class org.geon.BinaryFileReader
If this is called after prefire() has been called but before wrapup() has been called, then close any open file.
initialize() - Method in class org.geon.DatabaseAccessor
Close the connection if open.
initialize() - Method in class org.geon.GridOverlay
 
initialize() - Method in class org.geon.Interpolate
 
initialize() - Method in class org.geon.TokenToSeparateChannels
Gets the output port width.
initialize() - Method in class org.kepler.actor.database.DatabaseTableCreator
Close the connection if open.
initialize() - Method in class org.kepler.actor.io.SshDirectoryList
initialize() runs once before first exec
initialize() - Method in class org.kepler.actor.io.SshDirectoryList_v1_1
initialize() runs once before first exec
initialize() - Method in class org.kepler.actor.job.JobStatus
 
initialize() - Method in class org.kepler.actor.Logger
Set the format for the logging.
initialize() - Method in class org.kepler.actor.MappedLogger
Nothing to do currently.
initialize() - Method in class org.kepler.actor.ssh.DirectoryCreator
initialize() runs once before first exec
initialize() - Method in class org.kepler.actor.ssh.SshSession
initialize() runs once before first exec
initialize(InputSplit, TaskAttemptContext) - Method in class org.kepler.bio.hadoop.input.FASTARecordReader
 
initialize() - Method in class org.kepler.data.datasource.dataturbine.DataTurbineWriter
Initialize the actor.
initialize() - Method in class org.kepler.data.netcdf.NetCDFReader
 
initialize() - Method in class org.kepler.data.netcdf.NetCDFWriter
Create the NetCDF file, add the header information, and initialize the array.
initialize() - Method in class org.kepler.dataproxy.datasource.opendap.OpendapDataSourceODC
 
initialize() - Method in class org.kepler.gis.display.ENMPCPVisualizer
 
initialize() - Method in class org.kepler.gis.display.JumpGMLDisplayer
 
initialize() - Method in class org.kepler.gis.display.JumpMapTab
Description of the Method
initialize() - Method in class org.kepler.gis.display.JumpSHPDisplayer
 
initialize(Map<String, Action>) - Method in interface org.kepler.gui.InitializableAction
Initialize the action using the Ptolemy menu map.
initialize() - Method in class org.kepler.gui.kar.ActorUploaderAction
 
initialize() - Method in class org.kepler.gui.kar.ExportActorArchiveAction
Override the initialize method to change the behavior of the constructor.
initialize() - Method in class org.kepler.gui.kar.ExportArchiveAction
The initialize method is called at the end of the public constructor.
initialize(KARFile) - Method in class org.kepler.gui.kar.KarManifestViewer
 
initialize() - Method in class org.kepler.gui.kar.KarUploaderAction
 
initialize(NamedObj) - Method in class org.kepler.gui.lsid.LSIDViewer
 
initialize() - Method in class org.kepler.gui.popups.FolderPopup
 
initialize() - Method in class org.kepler.gui.popups.KARComponentPopup
 
initialize() - Method in class org.kepler.gui.popups.KARFolderPopup
 
initialize() - Method in class org.kepler.gui.popups.LibraryPopup
Override this method with the good stuff.
initialize() - Method in class org.kepler.gui.popups.NoLiidLibraryPopup
Override this method with the good stuff.
initialize() - Method in class org.kepler.gui.popups.OntologyComponentPopup
 
initialize() - Method in class org.kepler.gui.popups.OntologyPopup
 
initialize() - Method in class org.kepler.gui.popups.OutlineComponentPopup
 
initialize() - Method in class org.kepler.gui.popups.RemoteOntologyComponentPopup
 
initialize(Map<String, Action>) - Method in class org.kepler.gui.RunWithFeedbackChkBoxAction
 
initialize(CompositeEntity) - Method in class org.kepler.gui.WorkflowOutlinePanel
 
initialize(InputSplit, TaskAttemptContext) - Method in class org.kepler.hadoop.io.input.DelimitedTextRecordReader
 
initialize(InputSplit, TaskAttemptContext) - Method in class org.kepler.hadoop.io.input.DuplicatedTextRecordReader
 
initialize(InputSplit, TaskAttemptContext) - Method in class org.kepler.hadoop.io.input.FileContentRecordReader
 
initialize(InputSplit, TaskAttemptContext) - Method in class org.kepler.hadoop.io.input.FilePathRecordReader
 
initialize(InputSplit, TaskAttemptContext) - Method in class org.kepler.hadoop.io.input.MultiLineRecordReader
 
initialize(InputSplit, TaskAttemptContext) - Method in class org.kepler.hadoop.io.input.TokenRecordReader
Initialize the record reader with a split.
initialize() - Method in class org.kepler.kar.handlers.ActorMetadataKAREntryHandler
 
initialize() - Method in class org.kepler.kar.handlers.JARKAREntryHandler
 
initialize() - Method in class org.kepler.kar.handlers.ModuleTxtKAREntryHandler
The initialize method is called directly after instantiating this KAREntryHandler.
initialize() - Method in class org.kepler.kar.handlers.ProvKAREntryHandler
Does nothing.
initialize() - Method in class org.kepler.kar.handlers.ReportInstanceKAREntryHandler
 
initialize() - Method in class org.kepler.kar.handlers.ReportLayoutKAREntryHandler
 
initialize() - Method in class org.kepler.kar.handlers.WorkflowRunEntryHandler
 
initialize() - Method in interface org.kepler.kar.KAREntryHandler
The initialize method is called directly after instantiating this KAREntryHandler.
initialize() - Static method in class org.kepler.Kepler
Perform initialization.
Initialize - Class in org.kepler.module.biokepler
 
Initialize() - Constructor for class org.kepler.module.biokepler.Initialize
 
Initialize - Class in org.kepler.module.cloudsharing
Perform initialization for the cloud-sharing module.
Initialize() - Constructor for class org.kepler.module.cloudsharing.Initialize
 
Initialize - Class in org.kepler.module.core
Created by IntelliJ IDEA.
Initialize() - Constructor for class org.kepler.module.core.Initialize
 
Initialize - Class in org.kepler.module.ddpcommon
 
Initialize() - Constructor for class org.kepler.module.ddpcommon.Initialize
 
Initialize - Class in org.kepler.module.gis
Perform initialization for the gis module.
Initialize() - Constructor for class org.kepler.module.gis.Initialize
 
Initialize - Class in org.kepler.module.gui
Perform initialization for the GUI module.
Initialize() - Constructor for class org.kepler.module.gui.Initialize
 
Initialize - Class in org.kepler.module.hadoop
Module initializer for hadoop module.
Initialize() - Constructor for class org.kepler.module.hadoop.Initialize
 
Initialize - Class in org.kepler.module.provenance
Perform initialization for the provenance module.
Initialize() - Constructor for class org.kepler.module.provenance.Initialize
 
Initialize - Class in org.kepler.module.reporting
Perform initialization for the reporting module.
Initialize() - Constructor for class org.kepler.module.reporting.Initialize
 
Initialize - Class in org.kepler.module.spark
Module initializer for spark module.
Initialize() - Constructor for class org.kepler.module.spark.Initialize
 
Initialize - Class in org.kepler.module.stratosphere
Module initializer for stratosphere module.
Initialize() - Constructor for class org.kepler.module.stratosphere.Initialize
 
Initialize - Class in org.kepler.module.tagging
Created by IntelliJ IDEA.
Initialize() - Constructor for class org.kepler.module.tagging.Initialize
 
Initialize - Class in org.kepler.module.webview
Perform initialization for the web-view module.
Initialize() - Constructor for class org.kepler.module.webview.Initialize
 
Initialize - Class in org.kepler.module.workflowrunmanager
Initialize the workflow-run-manager module
Initialize() - Constructor for class org.kepler.module.workflowrunmanager.Initialize
 
Initialize - Class in org.kepler.module.workflowschedulergui
Module initializer for workflow-scheduler-gui.
Initialize() - Constructor for class org.kepler.module.workflowschedulergui.Initialize
 
initialize() - Static method in class org.kepler.moml.filter.GISClassChanges
Update Ptolemy's ClassChanges filter.
initialize() - Static method in class org.kepler.moml.filter.GISPropertyClassChanges
Update Ptolemy's PropertyClassChanges filter.
initialize() - Static method in class org.kepler.moml.filter.KeplerBackwardCompatibility
 
initialize() - Static method in class org.kepler.moml.filter.KeplerClassChanges
Update Ptolemy's ClassChanges filter.
initialize() - Static method in class org.kepler.moml.filter.KeplerPortNameChanges
Update Ptolemy's PortNameChanges filter.
initialize() - Static method in class org.kepler.moml.filter.KeplerPropertyClassChanges
Update Ptolemy's PropertyClassChanges filter.
initialize() - Method in class org.kepler.monitor.MonitorManager
Creates the MI attributes for the existing component entities in the container and activates the MI icons.
initialize() - Method in class org.kepler.monitor.test.ActorWithProgressBar
Starts the progress bar.
initialize() - Method in class org.kepler.monitor.test.ActorWithTokenCounters
Starts the counters.
initialize() - Method in class org.kepler.monitor.test.ActorWithTrafficLight
Starts the figure.
initialize() - Method in class org.kepler.objectmanager.cache.DataCacheGetActor
 
initialize() - Method in class org.kepler.objectmanager.cache.DataCachePutActor
 
initialize(Connection) - Method in class org.kepler.objectmanager.library.LibSearch
Initialize the instance.
initialize(Row, Plot) - Method in interface org.kepler.plotting.PlottingController
 
initialize() - Method in class org.kepler.provenance.ProvenanceRecorder
Invoke the initialize methods and check for additional MultiInstanceComposite actors created after preinitialize().
initialize() - Method in class org.kepler.reporting.ReportingListener
 
initialize() - Method in class org.kepler.scriptengine.ScriptEngineActor
Invoke the initialize() method in the script.
initialize() - Method in class org.kepler.sms.NamedOntModel
Initializes a named ont model wrapper for the ontology.
initialize() - Method in class org.kepler.sms.OntologyCatalog
 
initialize(boolean) - Method in class org.kepler.sms.OntologyCatalog
Description of the Method
initialize() - Method in class org.kepler.sms.util.OntologyConfiguration
Initialize the catalog TODO: read from config file
initialize() - Method in class org.kepler.spark.mllib.GetLiveMeasurements
Sets up the websocket and other member variables once per workflow execution.
initialize() - Method in class org.kepler.spark.mllib.KMeansApply
 
initialize() - Method in class org.kepler.spark.mllib.KMeansClustering
 
initialize() - Method in class org.kepler.spark.mllib.SantaAnaDetect
 
initialize() - Method in class org.kepler.spark.mllib.SantaAnaIdentify
 
initialize() - Method in class org.kepler.spark.mllib.Standardize
 
initialize() - Method in class org.kepler.spark.mllib.StandardizeApply
 
initialize() - Method in class org.kepler.tagging.gui.OntologyDisplayUI
Initialize the layout of the pane
initialize() - Method in class org.kepler.tagging.gui.OntologyEditorUI
Initialize layout of the pane
initialize() - Method in class org.kepler.tagging.gui.TagBarDisplayUI
Initialize the component
initialize() - Method in class org.kepler.tagging.gui.TagBarInsertionUI
Initialize the component
initialize() - Method in class org.kepler.tagging.gui.TagManagerUI
Initialize the layout of the pane
initialize() - Method in class org.kepler.util.AuthNamespace
Set the unique Authority and Namespace for this Kepler Instance.
initialize() - Method in class org.kepler.webview.actor.WebViewAttribute
 
initialize() - Static method in class org.kepler.webview.server.WebViewServer
Called during initialization.
initialize() - Method in class org.ROADnet.OrbImageSource
Initialize the component and connect to the ORB.
initialize() - Method in class org.ROADnet.OrbLogger
This method initializes the component and connects to the specified orb source.It also obtains all source names in the current orb and puts them in array _values.
initialize() - Method in class org.ROADnet.OrbPacketChannelExtractor
Connect to the ORB
initialize() - Method in class org.ROADnet.OrbPacketObjectSource
Connect to the ORB
initialize() - Method in class org.ROADnet.OrbWaveformSink
 
initialize() - Method in class org.ROADnet.OrbWaveformSource
Initialize the component and connect to the ORB.
initialize() - Method in class org.sdm.spa.ArchiveCounter
initialize() runs once before first exec
initialize() - Method in class org.sdm.spa.ArrayPermute
 
initialize() - Method in class org.sdm.spa.BrowserUI
 
initialize() - Method in class org.sdm.spa.DelayStreamToASpecificElement
initialize() runs once before first exec
initialize(String) - Method in class org.sdm.spa.gui.DoubleShellTextAreaPanel
Initialize the text area with the given starting message, followed by a prompt.
initialize() - Method in class org.sdm.spa.gui.UserInteractiveShell
If the shell has not already been created, create it.
initialize() - Method in class org.sdm.spa.MatchDisplay
 
initialize() - Method in class org.sdm.spa.ProcessFileRT
initialize() runs once before first exec
initialize() - Method in class org.sdm.spa.Repeat
Deprecated.
Initialize the PN actor.
initialize() - Method in class org.sdm.spa.SyncOnTerminator
initialize() runs once before first exec
initialize() - Method in class org.sdm.spa.TextualInteractionShell
If the shell has not already been created, create it.
initialize() - Method in class org.srb.DataGridTransfer
Initialize the source file system to null.
initialize() - Method in class org.srb.SGet
Initialize the srb file system to null.
initialize() - Method in class org.srb.SGetPhysicalLocation
Initialize the srb file system to null.
initialize() - Method in class org.srb.SProxy
Initialize the srb file system to null.
initialize() - Method in class org.srb.SPut
Initialize the srb file system to null.
initialize() - Method in class org.srb.SRBAddMD
Initialize the srb file system to null.
initialize() - Method in class org.srb.SRBConnect
Connect to SRB account.
initialize() - Method in class org.srb.SRBCreateQueryInterface
Initialize the srb file system to null.
initialize() - Method in class org.srb.SRBGetMD
Initialize the srb file system to null.
initialize() - Method in class org.srb.SRBProxyCommand
Initialize the srb file system to null.
initialize() - Method in class org.srb.SRBQueryMD
Initialize the srb file system to null.
initialize() - Method in class ptolemy.actor.AbstractInitializableAttribute
Invoke initialize() on registered initializables.
initialize() - Method in class ptolemy.actor.AtomicActor
Initialize this actor.
initialize() - Method in class ptolemy.actor.CompositeActor
Initialize this actor.
initialize() - Method in class ptolemy.actor.ConstantPublisherPort
Override the base class to initialize the token count.
initialize() - Method in class ptolemy.actor.Director
Initialize the model controlled by this director.
initialize(Actor) - Method in class ptolemy.actor.Director
Initialize the given actor.
initialize() - Method in class ptolemy.actor.DoNothingDirector
 
initialize(List<NamedObj>, ActorExecutionAspect) - Method in interface ptolemy.actor.ExecutionAspectListener
Initialize listener.
initialize() - Method in class ptolemy.actor.gui.CommunicationAspectMonitor
Initialize the plot and the legend with the list of communication aspects used in this model.
initialize(List<NamedObj>, ActorExecutionAspect) - Method in class ptolemy.actor.gui.ExecutionAspectPlotterEditorFactory
Initialize plot.
initialize() - Method in interface ptolemy.actor.Initializable
Begin execution of the actor.
initialize() - Method in interface ptolemy.actor.injection.ActorModuleInitializer.Initializer
Initialize the PtolemyInjector with modules specific to its platform.
initialize() - Method in class ptolemy.actor.lib.Accumulator
Reset the running sum to equal the value of init.
initialize() - Method in class ptolemy.actor.lib.ArrayAccumulate
Initialize this actor to have an empty accumulating array.
initialize() - Method in class ptolemy.actor.lib.Average
Reset the count of inputs.
initialize() - Method in class ptolemy.actor.lib.BooleanMultiplexor
Initialize this actor to the state where no select input has been read.
initialize() - Method in class ptolemy.actor.lib.BooleanSelect
Initialize this actor so that the falseInput is read from until a token arrives on the control input.
initialize() - Method in class ptolemy.actor.lib.BooleanSwitch
Initialize this actor so that the falseOutput is written to until a token arrives on the control input.
initialize() - Method in class ptolemy.actor.lib.CatchExceptionAttribute
Find all of the ExceptionSubscribers in the model.
initialize() - Method in class ptolemy.actor.lib.Clock
Deprecated.
Schedule the first firing and initialize local variables.
initialize() - Method in class ptolemy.actor.lib.comm.ConvolutionalCoder
Initialize the actor by resetting the shift register state equal to the value of initialState.
initialize() - Method in class ptolemy.actor.lib.comm.DeScrambler
Initialize the actor by resetting the shift register state equal to the value of initialState.
initialize() - Method in class ptolemy.actor.lib.comm.HadamardCode
Initialize the actor by resetting the index counter to begin at the beginning of the Hadamard sequence.
initialize() - Method in class ptolemy.actor.lib.comm.HuffmanBasic
Initialize the actor by resetting the _parametersInvalid to true.
initialize() - Method in class ptolemy.actor.lib.comm.HuffmanDecoder
Initialize the actor. set the current input string to be empty.
initialize() - Method in class ptolemy.actor.lib.comm.LempelZivCoder
Initialize the actor by creating the code book containing only one empty string "".
initialize() - Method in class ptolemy.actor.lib.comm.LempelZivDecoder
initialize the actor by creating a decode book that only contains one empty string "".
initialize() - Method in class ptolemy.actor.lib.comm.Scrambler
Initialize the actor by resetting the shift register state equal to the value of initialState.
initialize() - Method in class ptolemy.actor.lib.comm.ViterbiDecoder
Initialize the actor.
initialize() - Method in class ptolemy.actor.lib.Commutator
Begin execution by setting the current input channel to zero.
initialize() - Method in class ptolemy.actor.lib.Counter
Reset the count of inputs to zero.
initialize() - Method in class ptolemy.actor.lib.DelayStart
Sleep until the specified time.
initialize() - Method in class ptolemy.actor.lib.Dictionary
Clear the dictionary.
initialize() - Method in class ptolemy.actor.lib.Differential
Reset to indicate that no input has yet been seen.
initialize() - Method in class ptolemy.actor.lib.DiscreteClock
Override the base class to initialize the index.
initialize() - Method in class ptolemy.actor.lib.Distributor
Begin execution by setting the current output channel to zero.
initialize() - Method in class ptolemy.actor.lib.DoubleReader
Deprecated.
Open the file at the URL, and set the width of the output.
initialize() - Method in class ptolemy.actor.lib.ExceptionManager
Find all of the ExceptionSubscribers in the model and save in a list.
initialize() - Method in class ptolemy.actor.lib.Expression
Initialize the iteration count to 1.
initialize() - Method in class ptolemy.actor.lib.gem5.Gem5Wrapper
Set the state to equal the value of the init parameter.
initialize() - Method in class ptolemy.actor.lib.GradientAdaptiveLattice
Initialize the state of the filter.
initialize() - Method in class ptolemy.actor.lib.gui.ArrayPlotter
If the plot has not already been created, create it.
initialize() - Method in class ptolemy.actor.lib.gui.ArrayPlotterXY
If the plot has not already been created, create it.
initialize() - Method in class ptolemy.actor.lib.gui.ArrowKeySensor
Create the JFrame window capable of detecting the key-presses.
initialize() - Method in class ptolemy.actor.lib.gui.BarGraph
If the plot has not already been created, create it.
initialize() - Method in class ptolemy.actor.lib.gui.Display
Initialize this display.
initialize() - Method in class ptolemy.actor.lib.gui.EventButton
Mark that the model is now executing.
initialize() - Method in class ptolemy.actor.lib.gui.HistogramPlotter
If the histogram has not already been created, create it using place().
initialize() - Method in class ptolemy.actor.lib.gui.InteractiveDialog
If the shell has not already been created, create it.
initialize() - Method in class ptolemy.actor.lib.gui.InteractiveShell
If the shell has not already been created, create it.
initialize() - Method in class ptolemy.actor.lib.gui.MatrixViewer
Initialize this matrix viewer.
initialize() - Method in class ptolemy.actor.lib.gui.MonitorValue
Initialize the actor by clearing the display.
initialize() - Method in class ptolemy.actor.lib.gui.Plotter
If the plot has not already been created, create it.
initialize() - Method in class ptolemy.actor.lib.gui.RealTimePlotter
Record the start time.
initialize() - Method in class ptolemy.actor.lib.gui.SequencePlotter
Reset the x axis counter, and call the base class.
initialize() - Method in class ptolemy.actor.lib.gui.SequenceScope
Initialize this actor.
initialize() - Method in class ptolemy.actor.lib.gui.SketchedSource
Override the base class to read data from the plot and to produce all the data on the output.
initialize() - Method in class ptolemy.actor.lib.gui.SliderSource
Create a slider on the screen, if necessary.
initialize() - Method in class ptolemy.actor.lib.gui.TimedPlotter
Initialize this actor.
initialize() - Method in class ptolemy.actor.lib.gui.TimedScope
Initialize this actor.
initialize() - Method in class ptolemy.actor.lib.gui.XYScope
Configure the plotter using the current parameter values.
initialize() - Method in class ptolemy.actor.lib.hoc.ExecuteCompositeActor
Initialize this actor, which in this case, does nothing.
initialize() - Method in class ptolemy.actor.lib.hoc.MobileFunction
Deprecated.
Initialize this actor.
initialize() - Method in class ptolemy.actor.lib.hoc.ModelReference
Reset the state.
initialize() - Method in class ptolemy.actor.lib.hoc.RunCompositeActor
Initialize this actor, which in this case, does nothing.
initialize() - Method in class ptolemy.actor.lib.hoc.test.PreinitializeMustBeInvoked
 
initialize() - Method in class ptolemy.actor.lib.IIR
Initialize the filter state vector with zero state.
initialize() - Method in class ptolemy.actor.lib.image.ImageDisplay
Initialize this actor.
initialize() - Method in class ptolemy.actor.lib.image.ImageReader
Open the file at the URL, and set the width of the output.
initialize() - Method in class ptolemy.actor.lib.Interpolator
Set the iteration count to zero.
initialize() - Method in class ptolemy.actor.lib.io.CSVWriter
Initialize this actor.
initialize() - Method in class ptolemy.actor.lib.io.LineReader
If this is called after prefire() has been called but before wrapup() has been called, then close any open file re-open it, skip the number of lines given by the numberOfLinesToSkip parameter, and read the first line to be produced in the next invocation of prefire().
initialize() - Method in class ptolemy.actor.lib.Lattice
Initialize the state of the filter.
initialize() - Method in class ptolemy.actor.lib.LimitedFiringSource
Initialize the iteration counter.
initialize() - Method in class ptolemy.actor.lib.MicrostepDelay
Initialize the states of this actor.
initialize() - Method in class ptolemy.actor.lib.MovingAverage
Perform domain-specific initialization by calling the initialize(Actor) method of the director.
initialize() - Method in class ptolemy.actor.lib.MovingMaximum
Deprecated.
Initialize the maintained maximum value to be null so it will be set with the first input at the input port.
initialize() - Method in class ptolemy.actor.lib.Multiplexor
Initialize to the default, which is to use channel zero.
initialize() - Method in class ptolemy.actor.lib.NonStrictTest
Override the base class to set the iteration counter to zero.
initialize() - Method in class ptolemy.actor.lib.OrderedMerge
Initialize this actor to indicate that no token is recorded.
initialize() - Method in class ptolemy.actor.lib.PhaseUnwrap
Reset the state of the actor to assume the most recently seen phase is zero.
initialize() - Method in class ptolemy.actor.lib.PoissonClock
Request the first firing either at the start time or at a random time, depending on fireAtStart.
initialize() - Method in class ptolemy.actor.lib.PublisherNonStrictTest
Override the base class to set the iteration counter to zero.
initialize() - Method in class ptolemy.actor.lib.Pulse
Set the iteration count to zero.
initialize() - Method in class ptolemy.actor.lib.python.PythonScript
Invoke the initialize() method if defined in the script.
initialize() - Method in class ptolemy.actor.lib.r.RExpression
 
initialize() - Method in class ptolemy.actor.lib.r.RExpression2
 
initialize() - Method in class ptolemy.actor.lib.Ramp
Set the state to equal the value of the init parameter.
initialize() - Method in class ptolemy.actor.lib.RandomSource
Initialize the random number generator with the seed, if it has been given.
initialize() - Method in class ptolemy.actor.lib.Reader
Deprecated.
Open the file at the URL, and set the width of the output.
initialize() - Method in class ptolemy.actor.lib.Recorder
Initialize the lists used to record input data.
initialize() - Method in class ptolemy.actor.lib.RecursiveLattice
Initialize the state of the filter.
initialize() - Method in class ptolemy.actor.lib.ResettableTimer
Initialize the internal states of this actor.
initialize() - Method in class ptolemy.actor.lib.RunningMaximum
Initialize the maintained maximum value to be null so it will be set with the first input at the input port.
initialize() - Method in class ptolemy.actor.lib.RunningMinimum
Initialize the maintained minimum value to be null so it will be set with the first input at the input port.
initialize() - Method in class ptolemy.actor.lib.Select
Initialize this actor so that channel zero of input is read from until a token arrives on the control input.
initialize() - Method in class ptolemy.actor.lib.Sequence
Initialize the actor by resetting to the first output value.
initialize() - Method in class ptolemy.actor.lib.Sequencer
Reset current sequence number to the value given by the startingSequenceNumber parameter.
initialize() - Method in class ptolemy.actor.lib.SequentialClock
Deprecated.
Schedule the first firing and initialize local variables.
initialize() - Method in class ptolemy.actor.lib.SingleEvent
Request firing at the time given by the time parameter.
initialize() - Method in class ptolemy.actor.lib.SingleTokenCommutator
Begin execution by setting the current input channel to zero.
initialize() - Method in class ptolemy.actor.lib.Sleep
Reset the flag that fire() checks so that fire() only sleeps once.
initialize() - Method in class ptolemy.actor.lib.Switch
Initialize this actor so that channel zero of input is read from until a token arrives on the control input.
initialize() - Method in class ptolemy.actor.lib.TestExceptionAttribute
Initialize.
initialize() - Method in class ptolemy.actor.lib.TestExceptionHandler
Deprecated.
Initialize.
initialize() - Method in class ptolemy.actor.lib.TimeDelay
Initialize the states of this actor.
initialize() - Method in class ptolemy.actor.lib.TimedSource
Initialize the actor.
initialize() - Method in class ptolemy.actor.lib.TriggeredClock
Deprecated.
Override the base class to start not being enabled.
initialize() - Method in class ptolemy.actor.lib.TypeTest
Initialize this actor.
initialize() - Method in class ptolemy.actor.lib.URLDirectoryReader
Deprecated.
Open the file at the URL, and set the width of the output.
initialize() - Method in class ptolemy.actor.lib.URLReader
Open the file at the URL, and set the width of the output.
initialize() - Method in class ptolemy.actor.lib.xslt.XSLTransformer
Open the XSL file named by the styleSheetFile parameter and set up the transformer.
initialize() - Method in class ptolemy.actor.LocalClock
Initialize parameters that cannot be initialized in the constructor.
initialize() - Method in class ptolemy.actor.Manager
Initialize the model.
initialize() - Method in class ptolemy.actor.parameters.ParameterSet
Do nothing except invoke the initialize methods of objects that have been added using addInitializable().
initialize() - Method in class ptolemy.actor.parameters.PortParameter
Reset the current value to match the persistent value.
initialize() - Method in class ptolemy.actor.parameters.SharedParameter
Do nothing except invoke the initialize methods of objects that have been added using addInitializable().
initialize() - Method in class ptolemy.actor.process.CompositeProcessDirector
Invoke the initialize() methods of all the deeply contained actors in the container (a composite actor) of this director.
initialize(Actor) - Method in class ptolemy.actor.process.ProcessDirector
Initialize the given actor.
initialize() - Method in class ptolemy.actor.PublisherPort
If PubSubPort.initialTokens has been set, then produce the outputs specified by its array value.
initialize() - Method in class ptolemy.actor.PubSubPort
Do nothing.
initialize() - Method in class ptolemy.actor.sched.FixedPointDirector
Initialize the director and all deeply contained actors by calling the super.initialize() method.
initialize() - Method in class ptolemy.actor.sched.StaticSchedulingDirector
Initialize local variables.
initialize() - Method in class ptolemy.actor.SubscriberPort
If PubSubPort.initialTokens has been set, then make available the inputs specified by its array value.
initialize() - Method in class ptolemy.actor.test.TestActor
Record the initialization.
initialize() - Method in class ptolemy.actor.test.TypedTestActor
Record the initialization.
initialize() - Method in class ptolemy.actor.util.PeriodicDirectorHelper
If the period parameter is greater than zero, then request a first firing of the executive director, if there is one.
initialize() - Method in class ptolemy.component.AtomicComponent
Initialize the component, which in this base class means doing nothing and returning immediately.
initialize() - Method in interface ptolemy.component.Component
Initialize the component.
initialize() - Method in class ptolemy.component.ComponentActor
 
initialize() - Method in class ptolemy.component.ComponentDirector
Initialize the component.
initialize() - Method in class ptolemy.component.domains.ptinyos.PtinyOSDirector
Initialize the component.
initialize() - Method in class ptolemy.component.test.Counter
Reset the count of inputs to zero.
initialize() - Method in class ptolemy.data.expr.AbstractInitializableParameter
Invoke initialize() on registered initializables.
initialize(Type) - Method in class ptolemy.data.type.ArrayType
Set the elements that have declared type BaseType.UNKNOWN (the leaf type variable) to the specified type.
initialize(Type) - Method in class ptolemy.data.type.FixType
Set the elements that have declared type BaseType.UNKNOWN to the specified type.
initialize(Type) - Method in class ptolemy.data.type.FunctionType
Set the elements that have declared type BaseType.UNKNOWN (the leaf type variable) to the specified type.
initialize(Type) - Method in class ptolemy.data.type.MatrixType
Set the elements that have declared type BaseType.UNKNOWN to the specified type.
initialize(Object) - Method in class ptolemy.data.type.MonotonicFunction
Throw an Exception.
initialize(Type) - Method in class ptolemy.data.type.ObjectType
Ignore, as this type does not have elements.
initialize(Type) - Method in class ptolemy.data.type.RecordType
Set the elements that have declared type BaseType.UNKNOWN (the leaf type variable) to the specified type.
initialize(Type) - Method in class ptolemy.data.type.StructuredType
Set the elements that have declared type BaseType.UNKNOWN to the specified type.
initialize(Type) - Method in class ptolemy.data.type.TupleType
Set the elements that have declared type BaseType.UNKNOWN (the leaf type variable) to the specified type.
initialize(Object) - Method in class ptolemy.data.type.TypeConstant
Throw an Exception since type constant cannot be initialized.
initialize(Type) - Method in class ptolemy.data.type.UnionType
Set the elements that have declared type BaseType.UNKNOWN (the leaf type variable) to the specified type.
initialize() - Method in class ptolemy.domains.continuous.kernel.ContinuousDirector
Initialize model after type resolution.
initialize() - Method in class ptolemy.domains.continuous.kernel.ContinuousIntegrator
Initialize the integrator.
initialize() - Method in class ptolemy.domains.continuous.kernel.Noise
Initialize the random number generator with the seed, if it has been given.
initialize() - Method in class ptolemy.domains.continuous.lib.BandlimitedNoise
Initialize the random number generator with the seed, if it has been given.
initialize() - Method in class ptolemy.domains.continuous.lib.ContinuousMerge
Initialize this actor by clearing memory of any pending outputs.
initialize() - Method in class ptolemy.domains.continuous.lib.ContinuousTimeDelay
Initialize the states of this actor.
initialize() - Method in class ptolemy.domains.continuous.lib.Derivative
Ensure that the next invocation of the fire() method is treated as a first firing.
initialize() - Method in class ptolemy.domains.continuous.lib.EventSource
Deprecated.
Schedule the first firing and initialize local variables.
initialize() - Method in class ptolemy.domains.continuous.lib.LevelCrossingDetector
Initialize the execution.
initialize() - Method in class ptolemy.domains.continuous.lib.PeriodicSampler
Set the next sampling time for each input as the start time (i.e. the current time).
initialize() - Method in class ptolemy.domains.continuous.lib.Waveform
Override the base class to set the output microstep to zero.
initialize() - Method in class ptolemy.domains.continuous.lib.ZeroOrderHold
Initialize token.
initialize() - Method in class ptolemy.domains.ddf.kernel.DDFDirector
Initialize the model controlled by this director.
initialize(Actor) - Method in class ptolemy.domains.ddf.kernel.DDFDirector
Initialize the given actor.
initialize() - Method in class ptolemy.domains.ddf.lib.ActorRecursion
Initialize this actor.
initialize() - Method in class ptolemy.domains.ddf.lib.DDFBooleanSelect
Initialize this actor and the rate parameters so that it will read from the control port in the first iteration.
initialize() - Method in class ptolemy.domains.ddf.lib.DDFSelect
Initialize this actor and rate parameters so that it will read from the control port in the first iteration.
initialize() - Method in class ptolemy.domains.ddf.lib.DDFSingleTokenCommutator
Begin execution by setting rate parameter indicating it will read the zeroth input channel.
initialize() - Method in class ptolemy.domains.de.demo.SmartSender.SmartSender
Initialize this actor, which in this case requests a firing at the current time.
initialize() - Method in class ptolemy.domains.de.kernel.DEDirector
Initialize all the contained actors by invoke the initialize() method of the super class.
initialize() - Method in class ptolemy.domains.de.kernel.DEThreadActor
Create a thread for the actor and start the thread.
initialize() - Method in class ptolemy.domains.de.lib.AverageOverTime
Initialize this actor.
initialize() - Method in class ptolemy.domains.de.lib.DateToEvent
Check weather enclosing director is a DEDirector with synchronizeToRealTime is enabled.
initialize() - Method in class ptolemy.domains.de.lib.DateToModelTime
Check weather enclosing director is a DEDirector with synchronizeToRealTime is enabled.
initialize() - Method in class ptolemy.domains.de.lib.Derivative
Reset to indicate that no input has yet been seen.
initialize() - Method in class ptolemy.domains.de.lib.EventButton
Deprecated.
Create a button on the screen, if necessary.
initialize() - Method in class ptolemy.domains.de.lib.EventToDate
Check weather enclosing director is a DEDirector with synchronizeToRealTime is enabled.
initialize() - Method in class ptolemy.domains.de.lib.Integrator
Reset to indicate that no input has yet been seen.
initialize() - Method in class ptolemy.domains.de.lib.Merge
Initialize this actor by creating a new queue for pending outputs.
initialize() - Method in class ptolemy.domains.de.lib.MostRecent
Clear the cached input tokens.
initialize() - Method in class ptolemy.domains.de.lib.NonInterruptibleTimer
Deprecated.
Reset the states of the server to indicate that the timer is not processing any inputs.
initialize() - Method in class ptolemy.domains.de.lib.PID
Reset to indicate that no input has yet been seen.
initialize() - Method in class ptolemy.domains.de.lib.Previous
Initialize so that the initial token will be produced.
initialize() - Method in class ptolemy.domains.de.lib.QuantizedSampler
Initialize this actor.
initialize() - Method in class ptolemy.domains.de.lib.Queue
Clear the cached input tokens.
initialize() - Method in class ptolemy.domains.de.lib.Server
Reset the states of the server to indicate that the server is ready to serve.
initialize() - Method in class ptolemy.domains.de.lib.SharedQueue
Make all output channels ready.
initialize() - Method in class ptolemy.domains.de.lib.SuppressSimultaneousEvents
Reset to indicate that no input has yet been seen.
initialize() - Method in class ptolemy.domains.de.lib.test.TestSource
 
initialize() - Method in class ptolemy.domains.de.lib.TimeCompare
Initialize this actor.
initialize() - Method in class ptolemy.domains.de.lib.TimedDelay
Deprecated.
Initialize the states of this actor.
initialize() - Method in class ptolemy.domains.de.lib.TimeGap
Set the previous event time to negative infinity.
initialize() - Method in class ptolemy.domains.de.lib.Timer
Deprecated.
Initialize the internal states of this actor.
initialize() - Method in class ptolemy.domains.de.lib.VariableDelay
Deprecated.
Initialize the states of this actor.
initialize() - Method in class ptolemy.domains.de.lib.WaitingTime
Clear the list of waiters.
initialize() - Method in class ptolemy.domains.de.lib.Wire
Deprecated.
Initialize the actor.
initialize() - Method in class ptolemy.domains.de.test.CancelFireAtTest
Schedule firings at times 0, 1, 2, 3, 4.
initialize() - Method in class ptolemy.domains.de.test.SuperdenseTimeTest
Set the output value to 0.0.
initialize() - Method in class ptolemy.domains.modal.kernel.FSMActor
Initialize this actor by setting the current state to the initial state.
initialize() - Method in class ptolemy.domains.modal.kernel.FSMDirector
Initialize the mode controller and all the refinements by calling the initialize() method in the super class.
initialize() - Method in class ptolemy.domains.modal.kernel.MultirateFSMDirector
Initialize the mode controller and all the refinements.
initialize() - Method in class ptolemy.domains.modal.kernel.NonStrictFSMDirector
Initialize the director.
initialize() - Method in class ptolemy.domains.modal.kernel.test.ZeroOneSource
Initialize the iteration counter.
initialize() - Method in class ptolemy.domains.modal.modal.ModalModel
Initialize the mode controller and all the refinements by calling the initialize() method in the super class.
initialize() - Method in class ptolemy.domains.pn.demo.QR.ND_1
Initialize the PN actor.
initialize() - Method in class ptolemy.domains.pn.demo.QR.ND_2
Initialize the PN actor.
initialize() - Method in class ptolemy.domains.pn.demo.QR.ND_3
Initialize the PN actor.
initialize() - Method in class ptolemy.domains.pn.demo.QR.ND_4
Initialize the PN actor.
initialize() - Method in class ptolemy.domains.pn.demo.QR.ND_5
Initialize the PN actor.
initialize() - Method in class ptolemy.domains.pn.demo.QR.StreamToMatrix
Initialize the row and column number.
initialize() - Method in class ptolemy.domains.pn.kernel.NondeterministicMerge
Initialize this actor.
initialize() - Method in class ptolemy.domains.pn.kernel.PNDirector
Invoke the initialize() method of ProcessDirector.
initialize() - Method in class ptolemy.domains.pn.lib.Starver
Initialize this actor by setting the count of outputs to zero.
initialize() - Method in class ptolemy.domains.sdf.kernel.SDFDirector
Initialize the actors associated with this director and then set the iteration count to zero.
initialize() - Method in class ptolemy.domains.sdf.kernel.test.SDFTestRamp
Initialize the sequence so the first token created has value zero.
initialize() - Method in class ptolemy.domains.sdf.kernel.test.SDFTestZeroRate1
for debugging only...
initialize() - Method in class ptolemy.domains.sdf.kernel.test.SDFTestZeroRate2
for debugging only...
initialize() - Method in class ptolemy.domains.sdf.lib.Chop
Override the base class to ensure that the past buffer gets initialized.
initialize() - Method in class ptolemy.domains.sdf.lib.DelayLine
Initialize this actor by reading the value of initialValues.
initialize() - Method in class ptolemy.domains.sdf.lib.FIR
Perform domain-specific initialization by calling the initialize(Actor) method of the director.
initialize() - Method in class ptolemy.domains.sdf.lib.LMSAdaptive
Override the base class to re-initialize the taps.
initialize() - Method in class ptolemy.domains.sdf.lib.SampleDelay
Produce on the output a sequence tokens, one for each element of the initialOutputs parameter (which is an array).
initialize() - Method in class ptolemy.domains.sdf.lib.vq.HTVQEncode
Initialize this actor.
initialize() - Method in class ptolemy.domains.sdf.lib.vq.ImagePartition
Initialize this actor.
initialize() - Method in class ptolemy.domains.sdf.lib.vq.ImageSequence
Initialize this actor.
initialize() - Method in class ptolemy.domains.sdf.lib.vq.ImageUnpartition
Initialize this actor.
initialize() - Method in class ptolemy.domains.sdf.lib.vq.VQDecode
Initialize this actor.
initialize() - Method in class ptolemy.domains.sdf.optimize.lib.DummySource
Initialize the actor.
initialize() - Method in class ptolemy.domains.sdf.optimize.SharedBufferTransformer
initialize.
initialize(Object) - Method in interface ptolemy.graph.InequalityTerm
Initialize the value of this term to the specified CPO element.
initialize(Object) - Method in class ptolemy.graph.test.TestConstant
Throw an Exception.
initialize(Object) - Method in class ptolemy.graph.test.TestVariable
Set the value of this variable to the specified String.
initialize(String) - Method in class ptolemy.gui.ShellTextArea
Initialize the text area with the given starting message, followed by a prompt.
initialize(String) - Method in class ptolemy.gui.UserDialog
Initialize the text area with the given starting message.
initialize() - Method in class ptolemy.matlab.Expression
Initialize the iteration count to 1.
initialize() - Static method in class ptolemy.moml.filter.RemoveGraphicalClasses
Initialize the set of classes to remove.
initialize() - Method in class ptolemy.vergil.actor.lib.ModelDisplay
If the model is not yet displayed, then display it in its own window.
initializeAsRGB(String) - Method in class org.kepler.sms.Color
 
initializeAsStaticField(String) - Method in class org.kepler.sms.Color
 
initializeBuilder() - Method in class org.ecoinformatics.seek.querybuilder.QBApp
Sets which builder tab should be used if the query is null
initializeCommandLineArguments() - Method in interface org.kepler.module.ModuleCommandLineArguments
Perform any module-specific command line arguments.
initializeCommandLineArguments() - Method in class org.kepler.module.webview.CommandLineArguments
 
initializeDecoratedActors() - Method in interface ptolemy.actor.ActorExecutionAspect
Iterate through all entities deeply contained by the container, record for each that it is not executing.
initializeEffigy() - Method in interface ptolemy.actor.lib.gui.PlotterBaseInterface
Initialize the effigy of the plotter.
initializeEffigy() - Method in class ptolemy.actor.lib.gui.PlotterBaseJavaSE
Initialize the effigy of the plotter.
initializeEffigy() - Method in interface ptolemy.actor.lib.image.ImageDisplayInterface
Initialize the effigy of the image.
initializeEffigy() - Method in class ptolemy.actor.lib.image.ImageDisplayJavaSE
Initialize the effigy of the image.
initializeForTesting(String, String) - Method in class org.kepler.util.AuthNamespace
This initializer method is only to be used for JUnit testing.
initializeInjector() - Static method in class ptolemy.actor.injection.ActorModuleInitializer
Initialize the PtolemyInjector using module definitions from the ptolemy.actor.ActorModule.properties file.
initializeInteraction() - Method in class ptolemy.vergil.actor.ActorEditorGraphController
Initialize all interaction on the graph pane.
initializeInteraction() - Method in class ptolemy.vergil.actor.ActorViewerGraphController
Initialize all interaction on the graph pane.
initializeInteraction() - Method in class ptolemy.vergil.basic.BasicGraphController
Initialize all interaction on the graph pane.
initializeInteraction() - Method in class ptolemy.vergil.basic.WithIconGraphController
Initialize all interaction on the graph pane.
initializeInteraction() - Method in class ptolemy.vergil.icon.EditIconGraphController
Initialize all interaction on the graph pane.
initializeInteraction() - Method in class ptolemy.vergil.modal.FSMGraphController
Initialize interaction on the graph pane.
initializeInteraction() - Method in class ptolemy.vergil.modal.FSMViewerGraphController
Initialize all interaction on the graph pane.
initializeKepler(Configuration) - Static method in class org.kepler.hadoop.util.StubUtilities
Initialize the parts of Kepler required to run the sub-workflow in the stub.
initializeKepler(Configuration) - Static method in class org.kepler.spark.stub.StubUtilities
Initialize the parts of Kepler required to run the sub-workflow in the stub.
initializeKepler(Configuration) - Static method in class org.kepler.stratosphere.stub.StubUtilities
Initialize the parts of Kepler required to run the sub-workflow in the stub.
initializeModule() - Method in class org.kepler.module.biokepler.Initialize
Copy configurations.
initializeModule() - Method in class org.kepler.module.cloudsharing.Initialize
Perform any module-specific initializations.
initializeModule() - Method in class org.kepler.module.core.Initialize
 
initializeModule() - Method in class org.kepler.module.ddpcommon.Initialize
Copy configurations.
initializeModule() - Method in class org.kepler.module.gis.Initialize
Perform any module-specific initializations.
initializeModule() - Method in class org.kepler.module.gui.Initialize
Perform any module-specific initializations.
initializeModule() - Method in class org.kepler.module.hadoop.Initialize
Copy hadoop configuration info to base config files.
initializeModule() - Method in interface org.kepler.module.ModuleInitializer
Perform any module-specific initializations.
initializeModule() - Method in class org.kepler.module.provenance.Initialize
Perform any module-specific initializations.
initializeModule() - Method in class org.kepler.module.reporting.Initialize
Perform any module-specific initializations.
initializeModule() - Method in class org.kepler.module.spark.Initialize
Copy spark configuration info to base config files.
initializeModule() - Method in class org.kepler.module.stratosphere.Initialize
Copy stratosphere configuration info to base config files.
initializeModule() - Method in class org.kepler.module.tagging.Initialize
 
initializeModule() - Method in class org.kepler.module.webview.Initialize
Perform any module-specific initializations.
initializeModule() - Method in class org.kepler.module.workflowrunmanager.Initialize
Initialize the module
initializeModule() - Method in class org.kepler.module.workflowschedulergui.Initialize
Perform any module-specific initializations.
initializeNew(String) - Method in class org.kepler.sms.NamedOntModel
 
initializePtolemy() - Static method in class org.kepler.spark.stub.StubUtilities
Initialize Ptolemy.
initializePtolemy() - Static method in class org.kepler.stratosphere.stub.StubUtilities
Initialize Ptolemy.
Initializer - Class in org.cipres.kepler
The Initializer actor initializes the Registry of CORBA services used in CIPRes software package.
Initializer(CompositeEntity, String) - Constructor for class org.cipres.kepler.Initializer
Construct an Initializer actor with the given container and name.
initializeSystem() - Static method in class org.kepler.gui.KeplerInitializer
 
initializeTab() - Method in class org.ecoinformatics.seek.ecogrid.EcogridPreferencesTab
 
initializeTab() - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.DatasetPanel
Initialize the tab panel
initializeTab() - Method in class org.ecoinformatics.seek.ecogrid.ServicesListModificationPanel
 
initializeTab() - Method in class org.kepler.gui.BasicLibraryPane
Implementation of TabPane initializeTab()
initializeTab() - Method in class org.kepler.gui.ComponentLibraryPreferencesTab
 
initializeTab() - Method in class org.kepler.gui.ComponentLibraryTab
Implementation of TabPane getName()
initializeTab() - Method in class org.kepler.gui.kar.KARPreferencesTab
 
initializeTab() - Method in class org.kepler.gui.PlotsEditorPanel
Initialize the contents of the tab.
initializeTab() - Method in class org.kepler.gui.PlotsPanel
Initialize the contents of the tab.
initializeTab() - Method in interface org.kepler.gui.PreferencesTab
Initialization of the tab should be done at some point after the constructor is called.
initializeTab() - Method in interface org.kepler.gui.TabPane
Initialization of the tab should be done at some point after the constructor is called.
initializeTab() - Method in class org.kepler.gui.TabPaneExtensionExample
 
initializeTab() - Method in class org.kepler.gui.WorkflowOutlineTabPane
 
initializeTab() - Method in class org.kepler.objectmanager.cache.browser.CacheViewerTabPane
 
initializeTab() - Method in class org.kepler.profiling.gui.CurrentExecutionPanel
Initialize the tab.
initializeTab() - Method in class org.kepler.profiling.gui.ExecutionMonitorPanel
Initialize the tab.
initializeTab() - Method in class org.kepler.profiling.gui.PreviousExecutionPanel
Initialize the tab.
initializeTab() - Method in class org.kepler.profiling.gui.ViewWatchingTabPane
Initialize the contents of this tab pane.
initializeTab() - Method in class org.kepler.profiling.gui.WorkflowRunOutlineTabPane
 
initializeTab() - Method in class org.kepler.reporting.gui.ItemsOfInterestPanel
 
initializeTab() - Method in class org.kepler.reporting.gui.PropertiesPanel
 
initializeTab() - Method in class org.kepler.reporting.gui.ReportDesignerPanel
Initializes the tab for this TabPane in which the Report Designer is displayed.
initializeTab() - Method in class org.kepler.reporting.gui.ReportViewerPanel
 
initializeTab() - Method in class org.kepler.reporting.gui.ReportViewerTOC
 
initializeTab() - Method in class org.kepler.workflowrunmanager.gui.WorkflowRunManagerPanel
 
initializeTab() - Method in class org.kepler.workflowscheduler.gui.configurationwizard.WorkflowRunEnginePreferenceTab
Initialization of the tab should be done at some point after the constructor is called.
initializeTab() - Method in class org.kepler.workflowscheduler.gui.configurationwizard.WorkflowSchedulerPreferenceTab
Initialization of the tab should be done at some point after the constructor is called.
initializeTab() - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerParentPanel
Initialize the tab
initializeTab() - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerServerInstallationInfoPanel
Initialize the tab
initializeTabs(TableauFrame) - Method in class org.kepler.gui.TabManager
Instantiate all of the TabPanes that are specified in configuration.xml
initializeTest() - Method in class ptolemy.kernel.util.test.TestWorkspace3
 
initializeTest() - Method in class ptolemy.kernel.util.test.TestWorkspace4
 
initializeTest() - Method in class ptolemy.kernel.util.test.TestWorkspace5
 
initializeTest() - Method in class ptolemy.kernel.util.test.TestWorkspace6
 
initializeTest() - Method in class ptolemy.kernel.util.test.TestWorkspaceBase
Create threads that access a workspace in various ways.
initializeType() - Method in class org.kepler.reporting.rio.StaticReportItem
 
initializeType() - Method in class org.kepler.reporting.rio.StaticReportItemHR
 
initializeType() - Method in class org.kepler.reporting.rio.StaticReportItemImage
 
initializeType() - Method in class org.kepler.reporting.rio.StaticReportItemLabel
 
initializeType() - Method in class org.kepler.reporting.rio.StaticReportItemSection
 
initializeType() - Method in class org.kepler.reporting.rio.StaticReportItemText
 
initializeUI() - Method in class org.ecoinformatics.seek.querybuilder.QBApp
 
initializeView() - Method in class org.kepler.gui.ClassicViewPane
 
initializeView() - Method in class org.kepler.gui.DefaultViewPane
 
initializeView() - Method in class org.kepler.gui.DualVerticalViewPane
 
initializeView() - Method in class org.kepler.gui.SingleViewPane
 
initializeView() - Method in interface org.kepler.gui.ViewPane
Initialization of the view should be done at some point after the constructor is called.
initializeViews(TableauFrame) - Method in class org.kepler.gui.ViewManager
Instantiate all of the ViewPanes that are specified in configuration.xml
initializeWithFileName(String, String, String, int) - Method in class org.kepler.objectmanager.cache.DataCacheFileObject
This is one of the hardest working methods in the class.
initializeWorkflowTagging() - Method in class org.kepler.tagging.gui.TagBarInsertionUI
 
INITIALIZING - Static variable in class ptolemy.actor.Manager
Indicator that the execution is in the initialize phase.
initialOutput - Variable in class ptolemy.domains.continuous.lib.ContinuousTimeDelay
Initial output of the delay actor.
initialOutputs - Variable in class ptolemy.domains.sdf.lib.SampleDelay
The values that will be produced in the initialize method.
initialQueueCapacity - Variable in class ptolemy.domains.pn.kernel.PNDirector
The initial size of the queues for each communication channel.
InitialRegistrySearchDialogAction - Class in org.ecoinformatics.seek.ecogrid
This action will initialize registry search dialog box
InitialRegistrySearchDialogAction(String, EcogridPreferencesTab, Vector) - Constructor for class org.ecoinformatics.seek.ecogrid.InitialRegistrySearchDialogAction
Constructor
initialSet - Variable in class org.geon.TransitiveClosureDBQuery
Initial input set
initialState - Variable in class ptolemy.actor.lib.comm.ConvolutionalCoder
Integer defining the initial state of the shift register.
initialState - Variable in class ptolemy.actor.lib.comm.DeScrambler
Integer defining the initial state of the shift register.
initialState - Variable in class ptolemy.actor.lib.comm.Scrambler
Integer defining the initial state of the shift register.
initialState - Variable in class ptolemy.domains.continuous.kernel.ContinuousIntegrator
The initial state of type DoubleToken.
initialStateName - Variable in class ptolemy.domains.modal.kernel.FSMActor
Attribute specifying the name of the initial state of this actor.
initialStates - Variable in class ptolemy.actor.lib.LinearDifferenceEquationSystem
The initial condition for the state variables.
initialStates - Variable in class ptolemy.domains.continuous.lib.LinearStateSpace
The initial condition for the state variables.
initialTaps - Variable in class ptolemy.domains.sdf.lib.LMSAdaptive
The initial taps of the filter.
initialTokens - Variable in class ptolemy.actor.PubSubPort
The values that will be made available in the initialize method.
initialTrace - Variable in class ptolemy.actor.lib.gui.SketchedSource
The default signal to generate, prior to any user sketch.
initialValue - Variable in class ptolemy.domains.de.lib.Integrator
The value produced by the actor on its first iteration.
initialValue - Variable in class ptolemy.domains.de.lib.MostRecent
The value that is output when no input has yet been received.
initialValue - Variable in class ptolemy.domains.de.lib.Previous
The initial output value.
initialValue - Variable in class ptolemy.domains.de.lib.Wire
Deprecated.
The value that is output when no input has yet been received on the corresponding channel.
initialValues - Variable in class ptolemy.domains.sdf.lib.DelayLine
The initial values of the delay line.
initLibraryPanel() - Method in class org.kepler.gui.ComponentLibraryTab
 
initLibrarySearcher() - Method in class org.kepler.gui.ComponentLibraryTab
 
initLibrarySearchPane() - Method in class org.kepler.gui.ComponentLibraryTab
 
initLibraryTree() - Method in class org.kepler.gui.ComponentLibraryTab
 
initLibraryTree() - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerComponentLibraryTab
 
initOntSelectBox() - Method in class org.kepler.gui.ComponentLibraryTab
 
initStaticItems() - Static method in class org.kepler.reporting.rio.GUIReportItemManager
 
initSteps - Variable in class org.kepler.spark.mllib.KMeansClustering
The number of initialization steps for kmeans||
initSteps - Variable in class org.kepler.spark.mllib.KMeansModel
 
initStepSize - Variable in class ptolemy.domains.continuous.kernel.ContinuousDirector
User's hint for the initial integration step size.
initTabs() - Method in class org.kepler.gui.PreferencesFrame
Initialize the preference tab extensions from configuration.
initWindowAndSizeProperties() - Method in interface ptolemy.actor.lib.gui.PlotterBaseInterface
Initialize window and size attributes.
initWindowAndSizeProperties() - Method in class ptolemy.actor.lib.gui.PlotterBaseJavaSE
Initialize the effigy of the plotter.
initWindowAndSizeProperties() - Method in interface ptolemy.actor.lib.image.ImageDisplayInterface
Initialize window and size attributes.
initWindowAndSizeProperties() - Method in class ptolemy.actor.lib.image.ImageDisplayJavaSE
Initialize the effigy of the plotter.
Injector - Class in ptolemy.actor.injection
The Injector class is responsible for loading implementation based on a interface.
Injector() - Constructor for class ptolemy.actor.injection.Injector
 
inKeyValueTypes - Variable in class org.kepler.ddp.actor.pattern.SingleInputPatternActor
The input key value types.
inMemFlag - Variable in class org.ecoinformatics.seek.gis.java_gis.Grid
 
innerClass - Static variable in class ptolemy.util.test.InnerClassTest
Field that refers to an inner class.
InnerClass() - Constructor for class ptolemy.util.test.InnerClassTest.InnerClass
 
InnerClassTest - Class in ptolemy.util.test
This class has an inner class so that we can test objectToSourceFileName.
InnerClassTest() - Constructor for class ptolemy.util.test.InnerClassTest
 
InnerClassTest.InnerClass - Class in ptolemy.util.test
The inner class.
inPath(String) - Static method in class ptolemy.util.FileUtilities
Return true if the command can be found in the directories listed in the directories contained in the PATH environment variable.
input - Variable in class org.ecoinformatics.seek.util.FieldChooser
 
input - Variable in class org.geon.Duplicator
Input token.
input - Variable in class org.geon.FilterUI
The input to be displayed for selection.
input - Variable in class org.geon.GridOverlay
 
input - Variable in class org.geon.Interpolate
A string representation of the dataset
input - Variable in class org.geon.StringToPolygon
 
input - Variable in class org.geon.XMLToADN
XML name-value input string.
input - Variable in class org.kepler.actor.ArrayFilter
The array to filter.
input - Variable in class org.kepler.actor.DecimalFormatConverter
The input port, which is a trigger.
input - Variable in class org.kepler.actor.RecordOperation
The record token to operate on.
input - Variable in class org.kepler.bio.actor.BlastTabularResultMerge
The input port, which includes blast tabular results.
input - Variable in class org.kepler.cloudsharing.actor.ShareToCloud
The name of a file to be uploaded to the cloud.
input - Variable in class org.kepler.data.conversion.ArrayOfRecordsToRecordOfArrays
The input array of records.
input - Variable in class org.kepler.date.CreateDate
A string date and time.
input - Variable in class org.kepler.gis.actor.bbox.BoundingBoxValues
The bounding box.
input - Variable in class org.kepler.gis.actor.bbox.CoverBoundingBox
The input bounding box.
input - Variable in class org.kepler.gis.actor.bbox.ScaleBoundingBox
The input GIS data set.
input - Variable in class org.kepler.gis.actor.GetBoundingBox
The input GIS data set.
input - Variable in class org.kepler.gis.actor.io.RasterReader
The name of the file to read.
input - Variable in class org.kepler.gis.actor.io.VectorReader
The vectors/features to read.
input - Variable in class org.kepler.gis.actor.kml.WriteTimestampToKML
The KML to read.
input - Variable in class org.kepler.gis.actor.proj.GetUTMZone
The input file.
input - Variable in class org.kepler.gis.actor.proj.Reproject
Input GIS data set to reproject.
input - Variable in class org.kepler.gis.actor.VectorCombineFiles
An array of vector/feature file names to read.
input - Variable in class org.kepler.provenance.actor.AddProvenanceKeyValues
An optional input argument to executable.
INPUT - Static variable in class org.kepler.sms.gui.PortSemanticTypeEditorPane
 
INPUT - Static variable in class org.kepler.sms.gui.SuggestCompatibleOperation
 
input - Variable in class org.ROADnet.OrbPacketChannelExtractor
 
input - Variable in class org.ROADnet.OrbPacketObjectSource
 
input - Variable in class org.ROADnet.OrbWaveformSink
Data values to be written to the Antelope ORB
input - Variable in class org.ROADnet.QAQC
The input port.
input - Variable in class org.sdm.spa.DatabaseWriter
The input for the update.
input - Variable in class org.sdm.spa.EnumItemTriggered
 
input - Variable in class org.sdm.spa.gui.UserInteractiveShell
The input port.
input - Variable in class org.sdm.spa.MatchDisplay
 
input - Variable in class org.sdm.spa.SoaplabChooseOperation
The parameters for the "set_<name>" operations
input - Variable in class org.sdm.spa.SoaplabChooseResultType
The input is a soaplab service client on which the call is made after the user selects the get_<name> operation.
input - Variable in class org.sdm.spa.SyncOnTerminator
Input token.
input - Variable in class org.sdm.spa.TextualInteractionShell
 
input - Variable in class org.sdm.spa.XMLUpdater
The input port that reads the XML document.
input - Variable in class org.skidlkit.TextFileReader
The local input & output file names
input - Variable in class org.srb.SRBWriter
Input.
input - Variable in class org.surge.RecordToStrings
 
input - Variable in class ptolemy.actor.lib.ArrayPeakSearch
The input port.
input - Variable in class ptolemy.actor.lib.BooleanSwitch
The input port.
input - Variable in class ptolemy.actor.lib.BusDisassembler
The input port.
input - Variable in class ptolemy.actor.lib.ComputeHistogram
The input port of type double.
input - Variable in class ptolemy.actor.lib.ConfigurationSwitch
The input port.
input - Variable in class ptolemy.actor.lib.conversions.ComplexToCartesian
The port for the input, which has type ComplexToken.
input - Variable in class ptolemy.actor.lib.conversions.ComplexToPolar
The port for the input, which has type ComplexToken.
input - Variable in class ptolemy.actor.lib.conversions.StringToIntArray
The port for the input, which has type string.
input - Variable in class ptolemy.actor.lib.DateElements
Input for date token.
input - Variable in class ptolemy.actor.lib.Exec
Strings to pass to the standard input of the subprocess.
input - Variable in class ptolemy.actor.lib.gui.ArrayPlotter
Input port, which receives an array of doubles.
input - Variable in class ptolemy.actor.lib.gui.Display
The input port, which is a multiport.
input - Variable in class ptolemy.actor.lib.gui.HistogramPlotter
The input port, which is a multiport.
input - Variable in class ptolemy.actor.lib.gui.InteractiveDialog
The input port.
input - Variable in class ptolemy.actor.lib.gui.InteractiveShell
The input port.
input - Variable in class ptolemy.actor.lib.gui.MatrixViewer
The input port.
input - Variable in class ptolemy.actor.lib.gui.RealTimePlotter
Input port, which has type DoubleToken.
input - Variable in class ptolemy.actor.lib.gui.SequencePlotter
Input port, which has type DoubleToken.
input - Variable in class ptolemy.actor.lib.gui.TimedPlotter
Input port, which has type DoubleToken.
input - Variable in class ptolemy.actor.lib.hoc.MobileFunction
Deprecated.
The input port for incoming data.
input - Variable in class ptolemy.actor.lib.hoc.MobileModel
The input port for incoming data to the inside model.
input - Variable in class ptolemy.actor.lib.Maximum
The input port.
input - Variable in class ptolemy.actor.lib.Minimum
The input port.
input - Variable in class ptolemy.actor.lib.ModifyDate
Input for date tokens.
input - Variable in class ptolemy.actor.lib.Publisher
The input port.
input - Variable in class ptolemy.actor.lib.RecordDisassembler
The input port.
input - Variable in class ptolemy.actor.lib.RecordUpdater
The input port.
input - Variable in class ptolemy.actor.lib.SetVariable
The input port.
input - Variable in class ptolemy.actor.lib.Sink
The input port, which is a multiport.
input - Variable in class ptolemy.actor.lib.Subscriber
The input port.
input - Variable in class ptolemy.actor.lib.Transformer
The input port.
input - Variable in class ptolemy.actor.lib.UnionDisassembler
The input port.
input - Variable in class ptolemy.actor.test.IdentityActor
 
input - Variable in class ptolemy.component.ComponentActor
 
input - Variable in class ptolemy.domains.continuous.lib.ContinuousTransferFunction
Single input port.
input - Variable in class ptolemy.domains.continuous.lib.Derivative
The input port.
input - Variable in class ptolemy.domains.continuous.lib.LinearStateSpace
Multi-input port.
input - Variable in class ptolemy.domains.ddf.lib.DDFSelect
The input port.
input - Variable in class ptolemy.domains.de.lib.DETransformer
The input port.
input - Variable in class ptolemy.domains.de.lib.test.TestSource
 
input - Variable in class ptolemy.domains.pn.kernel.NondeterministicMerge
The input port.
input - Variable in class ptolemy.domains.pn.kernel.test.TestDirector
 
input - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestConsumer
 
input - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestDelay
 
input - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestSplit
 
input - Variable in class ptolemy.domains.sdf.lib.SDFTransformer
The input port.
input - Variable in class ptolemy.vergil.actor.lib.ModelDisplay
The input port through which to provide MoML to modify the model.
input1 - Variable in class org.kepler.gis.actor.calc.Difference
Vector data containing geometries from which to be subtracted.
input1 - Variable in class org.surge.RecordMerger
 
input1 - Variable in class ptolemy.domains.de.lib.TimeCompare
The first input port.
input1 - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestJoin
 
input1 - Variable in class ptolemy.domains.sdf.lib.DotProduct
The first input port.
input1_tokenConsumptionRate - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestJoin
 
input2 - Variable in class org.kepler.gis.actor.calc.Difference
Vector containing single geometry to subtract.
input2 - Variable in class org.surge.RecordMerger
 
input2 - Variable in class ptolemy.domains.de.lib.TimeCompare
The second input port.
input2 - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestJoin
 
input2 - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestZeroRate2
 
input2 - Variable in class ptolemy.domains.sdf.lib.DotProduct
The second input port.
input2_rate - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestZeroRate2
 
input2_tokenConsumptionRate - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestJoin
 
input2_tokenConsumptionRate - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestZeroRate2
 
input_rate - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestZeroRate2
 
input_rate1 - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestZeroRate1
 
input_stream - Variable in class ptolemy.data.expr.MatrixParserTokenManager
 
input_stream - Variable in class ptolemy.data.expr.PtParserTokenManager
 
input_stream - Variable in class ptolemy.moml.unit.UParserTokenManager
 
input_tokenConsumptionRate - Variable in class ptolemy.actor.lib.Commutator
The parameter controlling the input port consumption rate.
input_tokenConsumptionRate - Variable in class ptolemy.actor.lib.ComputeHistogram
The parameter that determines the consumption rate of the input.
input_tokenConsumptionRate - Variable in class ptolemy.actor.lib.Distributor
The parameter controlling the input port consumption rate.
input_tokenConsumptionRate - Variable in class ptolemy.domains.ddf.lib.DDFSelect
This parameter provides token consumption rate for input.
input_tokenConsumptionRate - Variable in class ptolemy.domains.ddf.lib.DDFSingleTokenCommutator
This parameter provides token consumption rate for each input channel.
input_tokenConsumptionRate - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestConsumer
 
input_tokenConsumptionRate - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestDelay
 
input_tokenConsumptionRate - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestSplit
 
input_tokenConsumptionRate - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestZeroRate1
 
input_tokenConsumptionRate - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestZeroRate2
 
input_tokenConsumptionRate - Variable in class ptolemy.domains.sdf.lib.SDFTransformer
The rate parameter for the input port.
input_tokenConsumptionRate - Variable in class ptolemy.domains.sdf.lib.VariableLattice
The parameter that gives the number of tokens consumed by the input port.
input_tokenConsumptionRate - Variable in class ptolemy.domains.sdf.lib.VariableRecursiveLattice
The number of tokens consumed from the input port.
input_tokenConsumptionRate - Variable in class ptolemy.domains.sdf.lib.vq.HTVQEncode
The input rate.
input_tokenConsumptionRate - Variable in class ptolemy.domains.sdf.lib.vq.ImageUnpartition
The input rate.
input_tokenConsumptionRate - Variable in class ptolemy.domains.sdf.lib.vq.VQDecode
The input rate.
inputA - Variable in class ptolemy.actor.lib.OrderedMerge
The first input port, which accepts any scalar token.
inputA_tokenConsumptionRate - Variable in class ptolemy.actor.lib.OrderedMerge
The token consumption rate for inputA.
inputArray - Variable in class ptolemy.actor.lib.hoc.ApplyFilterOverArray
The input port for an input array.
inputB - Variable in class ptolemy.actor.lib.OrderedMerge
The second input port, which accepts any scalar token with the same type as the first input port.
inputB_tokenConsumptionRate - Variable in class ptolemy.actor.lib.OrderedMerge
The token consumption rate for inputB.
inputChoice - Variable in class org.ecoinformatics.seek.util.FieldChooser
 
inputClient - Variable in class org.sdm.spa.SoaplabAnalysis
SoaplabServiceClient input from pervious soaplab actor operation.ServiceClient created in SoaplabService Starter Actor.
inputCount - Variable in class ptolemy.actor.lib.ComputeHistogram
The number of tokens to compute the histogram for.
inputDataMatrix - Variable in class org.cipres.kepler.MatrixAligner
A matrix containing the characters information of the analyzed taxa is passed to the RecIDCM3 actor through this input port.
inputDataMatrix - Variable in class org.cipres.kepler.RecIDCM3
A matrix containing the characters information of the analyzed taxa is passed to the RecIDCM3 actor through this input port.
inputECutOffPort - Variable in class org.camera.service.AverageGenomeSizeParserV2
Input port with ECutOff limit
inputEdgeCount(Node) - Method in class ptolemy.graph.DirectedGraph
Return the number of input edges of a specified node.
inputEdges(Node) - Method in class ptolemy.graph.DirectedGraph
Return the collection of input edges for a specified node.
inputFileName - Variable in class org.cipres.kepler.AlignmentEditor_Seaview
The input file name is transferred into the actor through this port.
inputFileName - Variable in class org.cipres.kepler.SubsetChooserActor
The input file name is received from this port.
inputFilename - Variable in class org.ecoinformatics.seek.backprop.BackProp
 
inputFilename - Variable in class org.ecoinformatics.seek.gis.gdal.GDALTranslateActor
the filename of the input file
inputFilename - Variable in class org.ecoinformatics.seek.gis.gdal.GDALWarpActor
the filename of the input file
inputFilename - Variable in class org.kepler.objectmanager.cache.DataCachePutActor
 
inputFileNamesToSkip - Static variable in class ptolemy.moml.MoMLParser
List of Strings that name files to be skipped.
inputFileParameter - Variable in class org.camera.service.Fastq2Fasta
The file's full path.
inputFilePath - Variable in class org.camera.service.Fastq2Fasta
Full path to the input file.
inputfiles - Variable in class org.kepler.actor.job.GenericJobLauncher
The string array of inputfiles.
inputfiles - Variable in class org.kepler.actor.job.JobCreator
The string array of inputfiles.
inputFormat - Variable in class org.kepler.date.CreateDate
The format of the input date and time.
inputIsPower - Variable in class ptolemy.actor.lib.DB
If the input is proportional to power, then set this to true.
inputMatrix - Variable in class org.cipres.kepler.TreeImprover
A matrix containing the characters information of the analyzed taxa is passed to the TreeImprover actor through this input port.
inputMechanism - Variable in class org.sdm.spa.WSWithComplexTypes
Setting to composite creates XML assembler and disassembler actors for complex (nested) parameters.
inputNameSet() - Method in class ptolemy.domains.modal.kernel.ia.InterfaceAutomaton
Return the names of the input ports as a Set.
inputNexusData - Variable in class org.cipres.kepler.PhyloDataReader
The phylogenetic data in Nexus format is passed to the PhyloDataReader actor through this input port.
inputNil - Variable in class org.sdm.spa.XMLAssembler
If true, then for each unconnected input port an element is created in the output document with an attribute nil whose value is "true".
inputObjectName - Variable in class org.ecoinformatics.seek.gis.grass.GrassExportActor
 
inputObjectName - Variable in class org.kepler.objectmanager.cache.DataCacheGetActor
 
inputObjectName - Variable in class org.kepler.objectmanager.cache.DataCachePutActor
 
inputObjectType - Variable in class org.kepler.objectmanager.cache.DataCacheGetActor
 
inputObjectType - Variable in class org.kepler.objectmanager.cache.DataCachePutActor
 
inputParameterName - Variable in class org.cipres.kepler.GUIRunCIPRes
The input parameter name (usually "infile") is sent through this port.
inputParameterValue - Variable in class org.cipres.kepler.GUIRunCIPRes
The input parameter value (usually the name of the input file of the execution) is sent through this port.
inputParams - Variable in class org.ecoinformatics.seek.gis.gdal.GDALWarpActor
The -s_srs params from the command line.
inputPort - Variable in class org.camera.service.IdSizeMapForSeqFile
 
inputPortFilePath - Variable in class org.camera.service.FastaValidation
Input file.
inputPortList() - Method in interface ptolemy.actor.Actor
Return a list of the input ports of this actor.
inputPortList() - Method in class ptolemy.actor.AtomicActor
List all the input ports.
inputPortList() - Method in class ptolemy.actor.CompositeActor
List the input ports of this actor.
inputPortList() - Method in class ptolemy.domains.modal.kernel.FSMActor
Return a list of the input ports.
inputPortType - Variable in class org.camera.service.FastaValidation
Input sequence type
inputPortType - Variable in class org.camera.service.Fastq2Fasta
Input sequence data type
inputStream - Variable in class org.sdm.spa.CommandLineExec
Strings to pass to the standard input of the subprocess.
inputStream - Variable in class ptolemy.data.expr.SimpleCharStream
 
inputStream - Variable in class ptolemy.moml.unit.SimpleCharStream
 
inputTree - Variable in class org.cipres.kepler.MatrixAligner
A tree in CIPRes tree data structure is passed to the RecIDCM3 actor through this input port.
inputTree - Variable in class org.cipres.kepler.RecIDCM3
A tree in CIPRes tree data structure is passed to the RecIDCM3 actor through this input port.
inputTree - Variable in class org.cipres.kepler.TreeDecomposer
A tree in CIPRes tree data structure is passed to the TreeDecomposer actor through this input port.
inputTree - Variable in class org.cipres.kepler.TreeImprover
A tree in CIPRes tree data structure is passed to the TreeImprover actor through this input port.
inputTree - Variable in class org.cipres.kepler.TreeParser
The tree description in CIPRes tree data structure is passed to the TreeParser actor through this input port.
inputTree - Variable in class org.cipres.kepler.TreeToString
The whole tree expression to pass to the TreeToString actor.
inputTrees - Variable in class org.cipres.kepler.TreeMerger
A set of trees in CIPRes tree data structure is passed to the TreeMerger actor through this input port.
inputTreeString - Variable in class org.cipres.kepler.TreeVizForester
Tree expression to pass to the Forester tree display package.
inputTrigger - Variable in class org.cipres.kepler.JRunCIPRes
The trigger that will enable the execution of this actor is received through this port.
inputTrigger - Variable in class org.cipres.kepler.NexusFileReader
A trigger signal that enables the actor is passed to the NexusFileReader actor through this input port.
inputURL - Variable in class org.geon.BrowserDisplay
The file name or URL to be displayed.
inputValue - Variable in class org.geon.StringToPolygon
Cache of most recently read data.
inputX - Variable in class ptolemy.actor.lib.gui.XYPlotter
Input port for the horizontal axis, with type DOUBLE.
inputY - Variable in class ptolemy.actor.lib.gui.XYPlotter
Input port for the vertical axis, with type DOUBLE.
inRDD - Variable in class org.kepler.spark.mllib.CreateVectorRDD
The input RDD of Strings.
INSERT - Static variable in class org.ecoinformatics.seek.dataquery.DBTablesGenerator
 
insert(PreparedStatement, String, String) - Method in class org.kepler.util.sql.DatabaseType
Execute a prepared statement that returns an auto-incremented key.
insert(Object) - Method in class ptolemy.actor.util.TotallyOrderedSet
Insert the given element while keeping the set sorted.
insertAfter(String, Nameable) - Method in class ptolemy.kernel.util.NamedList
Insert a new element after the specified element.
insertAnyHuskRunReferralList(WorkflowRun) - Method in class org.kepler.provenance.sql.SQLRecordingV8
 
insertBefore(String, Nameable) - Method in class ptolemy.kernel.util.NamedList
Insert a new element before the specified element.
insertBodyContent(String) - Method in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Insert a string to the body with auto-indent.
insertClock() - Method in class ptolemy.domains.de.lib.test.Mutate
 
insertClock() - Method in class ptolemy.kernel.util.test.system.TestDE
Insert a new clock.
insertColumn(int, ColumnSpec) - Method in class com.jgoodies.forms.layout.FormLayout
Inserts the specified column at the specified position.
insertEntryIntoCache(File, KeplerLSID, String, String) - Method in class org.kepler.kar.KARCacheManager
 
insertFeedback() - Method in class ptolemy.kernel.util.test.system.ChangeRequestTest
Insert a feedback loop.
insertHeaderContent(boolean, boolean, String) - Method in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Insert a string to the header with auto-indent.
insertHuskRun(KARFile, WorkflowRun) - Method in class org.kepler.provenance.sql.SQLRecordingV8
If run's exec LSID does not already exist in provenance, insert WorkflowRun into provenance.
insertInsideLink(int, Relation) - Method in class ptolemy.kernel.ComponentPort
Insert a link to the specified relation at the specified index, and notify the container by calling its connectionsChanged() method.
insertIntoCache(KARFile) - Method in class org.kepler.kar.KARCacheManager
Insert a KARFile into the KARS_CACHED table.
insertKARError(KARFile) - Method in class org.kepler.kar.KARCacheManager
 
insertLink(int, Relation) - Method in class ptolemy.actor.IOPort
Override the base class to invalidate the schedule and resolved types of the director of the container, if there is one, in addition to what the base class does.
insertLink(int, Relation) - Method in class ptolemy.kernel.ComponentPort
Insert a link to the specified relation at the specified index, and notify the container by calling its connectionsChanged() method.
insertLink(int, Relation) - Method in class ptolemy.kernel.Port
Insert a link to the specified relation at the specified index, and notify the container by calling its connectionsChanged() method.
insertLink(int, CrossRefList) - Method in class ptolemy.kernel.util.CrossRefList
Insert a link to the specified CrossRefList (farList) at the specified position (index).
insertObject(CacheObjectInterface) - Method in class org.kepler.objectmanager.cache.CacheManager
insert a new CacheObjectInterface into the cache.
insertPreviewRun(WorkflowRun) - Method in class org.kepler.provenance.sql.SQLRecordingV8
If run's exec LSID does not already exist in provenance, insert WorkflowRun into provenance.
insertProxy(ProxyEntity) - Method in class org.kepler.authentication.ProxyRepository
This function is used by LoginGUI to insert the new proxy into the proxyRepository
insertRow(int, RowSpec) - Method in class com.jgoodies.forms.layout.FormLayout
Inserts the specified column at the specified position.
insertRow(int, int, String) - Method in class org.kepler.objectmanager.library.LibSearch
Convenience method to reduce code redundancy.
insertRow(String, String, long, long) - Static method in class org.kepler.objectmanager.lsid.LSIDGenerator
Insert a row into the LSID generator table.
insertTag(String, String, String, int) - Method in class org.kepler.provenance.sql.SQLRecordingV8
Insert a new row into the tag table.
insertUpdate(DocumentEvent) - Method in class org.kepler.reporting.gui.DynamicReportItemPanel.DynamicReportItemLabelDocumentListener
 
insertUpdate(DocumentEvent) - Method in class org.kepler.reporting.gui.ReportDesignerPanel.SectionHeaderDocumentListener
 
insertUpdate(DocumentEvent) - Method in class org.kepler.reporting.gui.ReportDesignerPanel.TextAreaDocumentListener
 
insertUpdate(DocumentEvent) - Method in class org.kepler.reporting.gui.ReportDesignerPanel.TitleDocumentListener
 
insertUpdate(DocumentEvent) - Method in class ptolemy.actor.gui.TextEditor
React to notification that there was an insert into the document.
insertWorkflowTags(int) - Method in class org.kepler.provenance.sql.SQLRecordingV8
Parse workflow moml for tags, and insert them, associated with execID
insets - Variable in class com.jgoodies.forms.layout.CellConstraints
Describes the component's Insets in it's display area.
InsideEntityEditorPaneFactory - Class in ptolemy.actor.gui
This is an attribute that can create a pane (called a "configuration widget") for interactively configuring an entity contained by its container.
InsideEntityEditorPaneFactory(NamedObj, String) - Constructor for class ptolemy.actor.gui.InsideEntityEditorPaneFactory
Construct a factory with the specified container and name.
insidePortList() - Method in class ptolemy.kernel.ComponentPort
List the ports connected on the inside to this port.
insidePorts() - Method in class ptolemy.kernel.ComponentPort
Deprecated.
Use insidePortList() instead.
insideRelationList() - Method in class ptolemy.kernel.ComponentPort
List the relations linked on the inside to this port.
insideRelations() - Method in class ptolemy.kernel.ComponentPort
Enumerate the relations linked on the inside to this port.
insideSinkPortList() - Method in class ptolemy.actor.IOPort
Return a list of the ports that may accept data from this port when it sends on the inside.
insideSourcePortList() - Method in class ptolemy.actor.IOPort
Return a list of the ports that can send data to this port from the inside.
installEditors() - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIAdv
Creates and Installs cell editors, must be called AFTER setting the model
installEditors() - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIBase
Creates and Installs cell editors, must be called AFTER setting the model
installEditors() - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIStd
Creates and Installs cell editors, must be called AFTER setting the model
instance() - Static method in class org.ecoinformatics.seek.sms.AnnotationEngine
 
instance() - Static method in class org.ecoinformatics.seek.sms.KeplerLocalLSIDService
 
instance() - Static method in class org.ecoinformatics.seek.sms.OntologyCatalog
 
instance - Static variable in class org.kepler.job.JobFactory
 
instance - Static variable in class org.kepler.job.JobManagerFactory
 
instance() - Static method in class org.kepler.sms.OntologyCatalog
 
instance() - Static method in class org.kepler.sms.util.OntologyConfiguration
This method must be called to create/obtain an instance of the catalog
instance - Static variable in class org.kepler.ssh.GsiSshSessionFactory
 
instance - Static variable in class org.kepler.ssh.SshEventRegistry
 
instance() - Static method in class org.kepler.tagging.TagCache
 
instance - Variable in class ptolemy.actor.lib.hoc.MultiInstanceComposite
The index of this instance.
instanceNoInitialize() - Static method in class org.kepler.sms.OntologyCatalog
 
instanceOf() - Static method in class org.kepler.objectmanager.data.DataTypeResolver
returns a singleton instance of the DataTypeResolver
InstanceOpener - Interface in ptolemy.actor
An interface that is used to open an instance of a NamedObj.
instancesOf - Variable in class ptolemy.vergil.basic.export.web.DefaultIconLink
If non-empty (the default), specifies a class name.
instancesOf - Variable in class ptolemy.vergil.basic.export.web.DefaultIconScript
If non-empty (the default), specifies a class name.
instancesOf - Variable in class ptolemy.vergil.basic.export.web.DefaultTitle
If non-empty (the default), specifies a class name.
Instantiable - Interface in ptolemy.kernel.util
This interface is for objects that can be instantiated.
InstantiableNamedObj - Class in ptolemy.kernel
An InstantiableNamedObj is a named object that can be either a class definition or an instance.
InstantiableNamedObj() - Constructor for class ptolemy.kernel.InstantiableNamedObj
Construct an object in the default workspace with an empty string as its name.
InstantiableNamedObj(String) - Constructor for class ptolemy.kernel.InstantiableNamedObj
Construct an object in the default workspace with the given name.
InstantiableNamedObj(Workspace) - Constructor for class ptolemy.kernel.InstantiableNamedObj
Construct an object in the given workspace with an empty string as a name.
InstantiableNamedObj(Workspace, String) - Constructor for class ptolemy.kernel.InstantiableNamedObj
Construct an object in the given workspace with the given name.
instantiate(NamedObj, String) - Method in class ptolemy.kernel.ComponentEntity
Create an instance by cloning this object and then adjusting the parent-child relationships between the clone and its parent.
instantiate(NamedObj, String) - Method in class ptolemy.kernel.InstantiableNamedObj
Create an instance by (deeply) cloning this object and then adjusting the parent-child relationships between the clone and its parent.
instantiate(NamedObj, String) - Method in interface ptolemy.kernel.util.Instantiable
Create an instance by (deeply) cloning this object and then adjusting the parent-child relationships between the clone and its parent.
instantiate(NamedObj, String) - Method in class ptolemy.kernel.util.test.TestInstantiableAttribute
 
instantiate(NamedObj, String) - Method in class ptolemy.kernel.util.test.TestInstantiableNamedObj
 
InstantiateAttributeAction(ExtendedGraphFrame, String) - Constructor for class ptolemy.vergil.actor.ActorGraphFrame.InstantiateAttributeAction
Create a new action to instantiate an attribute.
InstantiateEntityAction(ExtendedGraphFrame, String) - Constructor for class ptolemy.vergil.actor.ActorGraphFrame.InstantiateEntityAction
Create a new action to instantiate an entity.
INT - Static variable in class org.kepler.objectmanager.data.DataType
The following definitions are definitions of the types that should be used in the class Attribute for defining what kind of object an attribute uses.
INT - Static variable in class ptolemy.data.type.BaseType
The integer data type.
INT_MATRIX - Static variable in class ptolemy.data.type.BaseType
The integer matrix data type.
IntArrayToString - Class in ptolemy.actor.lib.conversions
Convert an integer-array into a string.
IntArrayToString(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.conversions.IntArrayToString
Construct an actor with the given container and name.
INTEGER - Static variable in class org.ecoinformatics.seek.dataquery.DBTablesGenerator
 
INTEGER - Static variable in class org.kepler.objectmanager.data.DataType
represents an integer {...,-3,-2,-1,0,1,2,3,...}
INTEGER - Static variable in class org.kepler.util.sql.Column
An integer column.
integer - Variable in class org.resurgence.actor.StringToInt
The output port, which has type int.
INTEGER - Static variable in interface ptolemy.data.expr.MatrixParserConstants
RegularExpression Id.
integer() - Method in class ptolemy.data.expr.PtParser
 
INTEGER - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
INTEGER - Static variable in interface ptolemy.moml.unit.UParserConstants
RegularExpression Id.
INTEGER_FORMAT_SPEC - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
INTEGER_FRACTION - Static variable in class ptolemy.math.Precision
static IntegerFractionPrecisionFormat object.
IntegerArrayMath - Class in ptolemy.math
This class provides a library for mathematical operations on int arrays.
IntegerArrayMath() - Constructor for class ptolemy.math.IntegerArrayMath
 
IntegerBinaryOperation - Interface in ptolemy.math
A operation taking two operands of type int, and producing a value of type int.
IntegerFieldChooser - Class in org.ecoinformatics.seek.util
 
IntegerFieldChooser(CompositeEntity, String) - Constructor for class org.ecoinformatics.seek.util.IntegerFieldChooser
Construct an actor with the given container and name.
IntegerFractionPrecisionFormat() - Constructor for class ptolemy.math.Precision.IntegerFractionPrecisionFormat
 
IntegerMatrixMath - Class in ptolemy.math
This class provides a library for mathematical operations on matrices of ints.
INTEGERTYPE - Static variable in class org.kepler.objectmanager.data.DataType
 
IntegerUnaryOperation - Interface in ptolemy.math
A operation taking one argument of type int, and producing a value of type int.
Integrator - Class in ptolemy.domains.continuous.lib
The integrator in the continuous domain.
Integrator(CompositeEntity, String) - Constructor for class ptolemy.domains.continuous.lib.Integrator
Construct an integrator.
Integrator - Class in ptolemy.domains.de.lib
Output the discrete integral of the input.
Integrator(CompositeEntity, String) - Constructor for class ptolemy.domains.de.lib.Integrator
Construct an actor with the given container and name.
integratorIntegrate(ContinuousIntegrator) - Method in class ptolemy.domains.continuous.kernel.ContinuousODESolver
Perform one integration step.
integratorIntegrate(ContinuousIntegrator) - Method in class ptolemy.domains.continuous.kernel.solver.ExplicitRK23Solver
Fire the given integrator.
integratorIntegrate(ContinuousIntegrator) - Method in class ptolemy.domains.continuous.kernel.solver.ExplicitRK45Solver
Fire the given integrator.
integratorIsAccurate(ContinuousIntegrator) - Method in class ptolemy.domains.continuous.kernel.ContinuousODESolver
Return true if the current integration step is accurate from the argument integrator's point of view.
integratorIsAccurate(ContinuousIntegrator) - Method in class ptolemy.domains.continuous.kernel.solver.ExplicitRK23Solver
Return true if the integration is accurate for the given integrator.
integratorIsAccurate(ContinuousIntegrator) - Method in class ptolemy.domains.continuous.kernel.solver.ExplicitRK45Solver
Return true if the integration is accurate for the given integrator.
integratorSuggestedStepSize(ContinuousIntegrator) - Method in class ptolemy.domains.continuous.kernel.ContinuousODESolver
The suggestedStepSize() method of the integrator delegates to this method.
integratorSuggestedStepSize(ContinuousIntegrator) - Method in class ptolemy.domains.continuous.kernel.solver.ExplicitRK23Solver
Provide the predictedStepSize() method for the integrators under this solver.
integratorSuggestedStepSize(ContinuousIntegrator) - Method in class ptolemy.domains.continuous.kernel.solver.ExplicitRK45Solver
Predict the next step size for the integrators executed under this solver.
interactionMode - Variable in class ptolemy.vergil.basic.layout.AbstractLayoutConfiguration
Mode of user interaction: whether user positioning is allowed to affect the layout.
InteractiveDialog - Class in ptolemy.actor.lib.gui
This actor creates a window on the screen with a command entry box and a results display box.
InteractiveDialog(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.gui.InteractiveDialog
Construct an actor with the given container and name.
InteractiveDialog.DialogFrame - Class in ptolemy.actor.lib.gui
The frame that is created by an instance of ShellTableau.
InteractiveDialog.DialogTableau - Class in ptolemy.actor.lib.gui
Version of ExpressionShellTableau that records the size of the display when it is closed.
InteractiveShell - Class in ptolemy.actor.lib.gui
This actor creates a command shell on the screen, sending commands that are typed by the user to its output port, and reporting values received at its input by displaying them.
InteractiveShell(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.gui.InteractiveShell
Construct an actor with the given container and name.
InteractiveShell.ShellFrame - Class in ptolemy.actor.lib.gui
The frame that is created by an instance of ShellTableau.
InteractiveShell.ShellTableau - Class in ptolemy.actor.lib.gui
Version of ExpressionShellTableau that records the size of the display when it is closed.
InterfaceAutomaton - Class in ptolemy.domains.modal.kernel.ia
This class models an Interface Automaton.
InterfaceAutomaton() - Constructor for class ptolemy.domains.modal.kernel.ia.InterfaceAutomaton
Construct an InterfaceAutomaton in the default workspace with an empty string as its name.
InterfaceAutomaton(Workspace) - Constructor for class ptolemy.domains.modal.kernel.ia.InterfaceAutomaton
Construct an InterfaceAutomaton in the specified workspace with an empty string as its name.
InterfaceAutomaton(CompositeEntity, String) - Constructor for class ptolemy.domains.modal.kernel.ia.InterfaceAutomaton
Create an InterfaceAutomaton in the specified container with the specified name.
InterfaceAutomatonGraphController - Class in ptolemy.vergil.modal.ia
A Graph Controller for interface automata models.
InterfaceAutomatonGraphController(File) - Constructor for class ptolemy.vergil.modal.ia.InterfaceAutomatonGraphController
Create a new controller with the specified directory of the current model.
InterfaceAutomatonGraphController.ComposeWithAction - Class in ptolemy.vergil.modal.ia
An action to perform composition.
InterfaceAutomatonGraphFrame - Class in ptolemy.vergil.modal.ia
This is a graph editor frame for ptolemy InterfaceAutomaton models.
InterfaceAutomatonGraphFrame(CompositeEntity, Tableau) - Constructor for class ptolemy.vergil.modal.ia.InterfaceAutomatonGraphFrame
Construct a frame associated with the specified model.
InterfaceAutomatonGraphFrame(CompositeEntity, Tableau, LibraryAttribute) - Constructor for class ptolemy.vergil.modal.ia.InterfaceAutomatonGraphFrame
Construct a frame associated with the specified model.
InterfaceAutomatonGraphTableau - Class in ptolemy.vergil.modal.ia
An editor tableau for interface automata.
InterfaceAutomatonGraphTableau(PtolemyEffigy, String) - Constructor for class ptolemy.vergil.modal.ia.InterfaceAutomatonGraphTableau
Create a new editor tableau with the specified container and name, with no default library.
InterfaceAutomatonGraphTableau(PtolemyEffigy, String, LibraryAttribute) - Constructor for class ptolemy.vergil.modal.ia.InterfaceAutomatonGraphTableau
Create a new editor tableau with the specified container, name, and default library.
InterfaceAutomatonGraphTableau.Factory - Class in ptolemy.vergil.modal.ia
A factory that creates graph editing tableaux for Ptolemy models.
InterfaceAutomatonTransition - Class in ptolemy.domains.modal.kernel.ia
A Transition for Interface Automaton.
InterfaceAutomatonTransition(InterfaceAutomaton, String) - Constructor for class ptolemy.domains.modal.kernel.ia.InterfaceAutomatonTransition
Construct a transition with the specified container and name.
InterfaceTableau - Class in ptolemy.actor.gui.run
A tableau that creates a new run control panel for a ptolemy model.
InterfaceTableau(PtolemyEffigy, String) - Constructor for class ptolemy.actor.gui.run.InterfaceTableau
Create a new run control panel for the model with the given effigy.
InterfaceTableau.Factory - Class in ptolemy.actor.gui.run
A factory that creates run control panel tableaux for Ptolemy models.
INTERMEDIATE - Static variable in interface org.ecoinformatics.seek.querybuilder.QBBuilderInterface
 
IntermediateReceiver - Class in ptolemy.actor
A receiver that delegates to another receiver all method calls except IntermediateReceiver.put(Token) (and its variants), for which it delegates to a communication aspect.
IntermediateReceiver(CommunicationAspect, Receiver) - Constructor for class ptolemy.actor.IntermediateReceiver
Construct an intermediate receiver with no container that wraps the specified receiver using the specified communication aspect.
IntermediateReceiver(CommunicationAspect, Receiver, IOPort) - Constructor for class ptolemy.actor.IntermediateReceiver
Construct an intermediate receiver with no container that wraps the specified receiver using the specified communication aspect.
intern(String) - Method in class com.microstar.xml.XmlParser
Return an internalised version of a string.
intern(char[], int, int) - Method in class com.microstar.xml.XmlParser
Create an internalised string from a character array.
INTERNAL - Static variable in class org.kepler.objectmanager.cache.DataCacheFileObject
 
InternalErrorException - Exception in ptolemy.kernel.util
This exception should be thrown if an unexpected error is encountered other than one for which InvalidStateException would be appropriate.
InternalErrorException(String) - Constructor for exception ptolemy.kernel.util.InternalErrorException
Construct an exception with a detail message.
InternalErrorException(Throwable) - Constructor for exception ptolemy.kernel.util.InternalErrorException
Construct an exception with only a cause.
InternalErrorException(Nameable, Throwable, String) - Constructor for exception ptolemy.kernel.util.InternalErrorException
Construct an exception with a detail message that includes the names of the first argument plus the third argument string.
InternalErrorException(Nameable, Nameable, Throwable, String) - Constructor for exception ptolemy.kernel.util.InternalErrorException
Construct an exception with a detail message that includes the names of the first argument, the name of the second argument and the value of the third argument.
internalFrameActivated(InternalFrameEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBTableDesktopPane
stubbed
internalFrameClosed(InternalFrameEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBTableDesktopPane
Recieces notification that a table frame was closed.
internalFrameClosing(InternalFrameEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBTableDesktopPane
stubbed
internalFrameDeactivated(InternalFrameEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBTableDesktopPane
stubbed
internalFrameDeiconified(InternalFrameEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBTableDesktopPane
stubbed
internalFrameIconified(InternalFrameEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBTableDesktopPane
stubbed
internalFrameOpened(InternalFrameEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBTableDesktopPane
stubbed
internalTransitionNameSet() - Method in class ptolemy.domains.modal.kernel.ia.InterfaceAutomaton
Return the names of the internal transitions as a Set.
Interpolate - Class in org.geon
A grid interpolation actor.
Interpolate(CompositeEntity, String) - Constructor for class org.geon.Interpolate
 
interpolate(int) - Method in class ptolemy.math.Interpolation
Return the interpolation result for the specified index.
interpolation - Variable in class ptolemy.domains.continuous.lib.Waveform
The interpolation method, which must be "linear" or "hermite".
interpolation - Variable in class ptolemy.domains.sdf.lib.FIR
The interpolation ratio of the filter.
Interpolation - Class in ptolemy.math
This class provides algorithms to do interpolation.
Interpolation() - Constructor for class ptolemy.math.Interpolation
Construct an instance of Interpolation using the default parameters.
interpolationAlg - Variable in class org.geon.Interpolate
The selected algorithm
Interpolator - Class in ptolemy.actor.lib
Produce an interpolation based on the parameters.
Interpolator(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Interpolator
Construct an actor with the specified container and name.
interpValue(double, double, int) - Method in class org.ecoinformatics.seek.gis.java_gis.Grid
 
interpValue_IDW(double, double) - Method in class org.ecoinformatics.seek.gis.java_gis.Grid
 
intersect(RecordToken, RecordToken) - Static method in class ptolemy.data.expr.UtilityFunctions
Find the intersection of two records.
intervalAdded(ListDataEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBWherePanel
 
intervalRemoved(ListDataEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBWherePanel
 
IntervalUnitComboBoxAction - Class in org.kepler.workflowscheduler.gui
 
IntervalUnitComboBoxAction() - Constructor for class org.kepler.workflowscheduler.gui.IntervalUnitComboBoxAction
Constructor
INTERVALUNITLABEL - Static variable in class org.kepler.workflowscheduler.gui.WorkflowSchedulerPanel
 
INTERVALUNITVALUE - Static variable in class org.kepler.workflowscheduler.gui.WorkflowSchedulerPanel
 
inText - Variable in class ptolemy.actor.lib.string.StringIndexOf
Port and parameter specifying the string that will be searched.
intMatrix() - Method in class ptolemy.data.IntMatrixToken
Return the content in the token as a 2-D int matrix.
intMatrix() - Method in class ptolemy.data.MatrixToken
Return the content of this token as a 2-D integer matrix.
IntMatrixToken - Class in ptolemy.data
A token that contains a 2-D int matrix.
IntMatrixToken() - Constructor for class ptolemy.data.IntMatrixToken
Construct an IntMatrixToken with a one by one matrix.
IntMatrixToken(int[], int, int) - Constructor for class ptolemy.data.IntMatrixToken
Construct a IntMatrixToken with the specified 1-D matrix.
IntMatrixToken(int[], int, int, int) - Constructor for class ptolemy.data.IntMatrixToken
Construct a IntMatrixToken with the specified 1-D matrix.
IntMatrixToken(int[][]) - Constructor for class ptolemy.data.IntMatrixToken
Construct a IntMatrixToken with the specified 2-D matrix.
IntMatrixToken(int[][], int) - Constructor for class ptolemy.data.IntMatrixToken
Construct a IntMatrixToken with the specified 2-D matrix.
IntMatrixToken(String) - Constructor for class ptolemy.data.IntMatrixToken
Construct an IntMatrixToken from the specified string.
IntMatrixToken(Token[], int, int) - Constructor for class ptolemy.data.IntMatrixToken
Construct an IntMatrixToken from the specified array of tokens.
IntMatrixType() - Constructor for class ptolemy.data.type.MatrixType.IntMatrixType
 
IntRangeParameter - Class in ptolemy.actor.parameters
This is a parameter with type integer with a limited range.
IntRangeParameter(NamedObj, String) - Constructor for class ptolemy.actor.parameters.IntRangeParameter
Construct an attribute with the given name contained by the specified container.
IntToBits - Class in ptolemy.domains.sdf.lib
This actor converts an IntToken into a sequence of Boolean tokens.
IntToBits(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.IntToBits
Construct an actor with the given container and name.
IntToken - Class in ptolemy.data
A token that contains a signed 32-bit integer number.
IntToken() - Constructor for class ptolemy.data.IntToken
Construct a token with integer 0.
IntToken(int) - Constructor for class ptolemy.data.IntToken
Construct a token with the specified value.
IntToken(String) - Constructor for class ptolemy.data.IntToken
Construct an IntToken from the specified string.
intValue() - Method in class ptolemy.data.IntToken
Return the value in the token as an int.
intValue() - Method in class ptolemy.data.ScalarToken
Return the value of this token as an int.
intValue() - Method in class ptolemy.data.ShortToken
Return the value in the token as an int.
intValue() - Method in class ptolemy.data.UnsignedByteToken
Return the value in the token as an integer.
intValue(String) - Method in class ptolemy.gui.Query
Deprecated.
Use getIntValue(String name) instead.
inUnits - Variable in class org.kepler.spark.mllib.ConvertColumns
incoming units of value to convert
InUnitsOf - Class in ptolemy.actor.lib.conversions
An actor that converts input tokens to specified units by dividing the input by the value of the units parameter.
InUnitsOf(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.conversions.InUnitsOf
Construct an actor with the given container and name.
inUnitsOf(ScalarToken) - Method in class ptolemy.data.ScalarToken
Return a scalar token that contains the value of this token in the units of the argument token.
INVALID - Static variable in class ptolemy.domains.modal.kernel.RelationType
Relation type a relation node that is not evaluated.
InvalidAnalyzerException - Exception in ptolemy.graph.analysis
Invalid analyzer plugged into an analysis.
InvalidAnalyzerException() - Constructor for exception ptolemy.graph.analysis.InvalidAnalyzerException
The default constructor without arguments.
InvalidAnalyzerException(String) - Constructor for exception ptolemy.graph.analysis.InvalidAnalyzerException
Constructor with a text description as argument.
invalidate() - Method in class ptolemy.actor.util.CausalityInterfaceForComposites
Indicate that the cached causality information is invalid.
invalidate() - Method in class ptolemy.data.expr.ConstraintMonitor
Override the base class to mark this as needing evaluation even though there is no expression.
invalidate() - Method in class ptolemy.data.expr.Variable
Mark this variable, and all variables that depend on it, as needing to be evaluated.
invalidateCommunicationAspects() - Method in class ptolemy.actor.IOPort
Invalidate the communication aspect list.
invalidateLayout(Container) - Method in class com.jgoodies.forms.layout.FormLayout
Invalidates the layout, indicating that if the layout manager has cached information it should be discarded.
invalidateLayout(Container) - Method in class org.mlc.swing.layout.ContainerLayout
 
invalidateResolvedTypes() - Method in class ptolemy.actor.Director
Indicate that resolved types in the model may no longer be valid.
invalidateResolvedTypes() - Method in class ptolemy.actor.Manager
Indicate that resolved types in the system may no longer be valid.
invalidateResolvedTypes() - Method in class ptolemy.domains.ddf.kernel.DDFDirector
Call base class method to invalidate resolved types if the flag to disable type resolution is set to false.
invalidateSchedule() - Method in class ptolemy.actor.Director
Indicate that a schedule for the model may no longer be valid, if there is a schedule.
invalidateSchedule() - Method in class ptolemy.actor.sched.StaticSchedulingDirector
Indicate that a schedule for the model may no longer be valid.
invalidateSchedule() - Method in class ptolemy.domains.de.kernel.DEDirector
Indicate that a schedule for the model may no longer be valid.
invalidateSchedule() - Method in class ptolemy.domains.modal.kernel.FSMDirector
Indicate that a schedule for the model may no longer be valid, if there is a schedule.
InvalidEcogridQueryException - Exception in org.ecoinformatics.seek.ecogrid.exception
This exception is thrown when a ecogrid query is invalid
InvalidEcogridQueryException(String) - Constructor for exception org.ecoinformatics.seek.ecogrid.exception.InvalidEcogridQueryException
 
InvalidEcoGridServiceException - Exception in org.ecoinformatics.seek.ecogrid.exception
This class represent some error in ecogrid service object.
InvalidEcoGridServiceException(String) - Constructor for exception org.ecoinformatics.seek.ecogrid.exception.InvalidEcoGridServiceException
 
InvalidMetadataException - Exception in org.kepler.objectmanager
exception that is thrown when the moml metadata is invalid for some reason
InvalidMetadataException(String) - Constructor for exception org.kepler.objectmanager.InvalidMetadataException
 
InvalidMetadataException(String, Throwable) - Constructor for exception org.kepler.objectmanager.InvalidMetadataException
 
InvalidStateException - Exception in ptolemy.kernel.util
Some object or set of objects has a state that is not permitted.
InvalidStateException(String) - Constructor for exception ptolemy.kernel.util.InvalidStateException
Construct an exception with only a detail message.
InvalidStateException(Nameable, Throwable, String) - Constructor for exception ptolemy.kernel.util.InvalidStateException
Construct an exception with a detail message that includes the name of the first argument, the cause and the third argument string.
InvalidStateException(Nameable, String) - Constructor for exception ptolemy.kernel.util.InvalidStateException
Construct an exception with a detail message that includes the name of the first argument and the second argument string.
InvalidStateException(Nameable, Nameable, String) - Constructor for exception ptolemy.kernel.util.InvalidStateException
Construct an exception with a detail message that includes the names of the first two arguments plus the third argument string.
InvalidStateException(Nameable, Nameable, Throwable, String) - Constructor for exception ptolemy.kernel.util.InvalidStateException
Construct an exception with a detail message that includes the names of the first two arguments plus the third argument string.
InvalidStateException(Enumeration, String) - Constructor for exception ptolemy.kernel.util.InvalidStateException
Deprecated.
Use InvalidStateException(Collection, String) instead.
InvalidStateException(Collection, String) - Constructor for exception ptolemy.kernel.util.InvalidStateException
Constructs an exception with a detail message that includes the names of a collection of nameable objects plus the argument string.
InvalidStateException(Collection, Throwable, String) - Constructor for exception ptolemy.kernel.util.InvalidStateException
Constructs an exception with a detail message that includes the names of a collection of nameable objects plus the argument string.
InvalidStringAttribute - Class in ptolemy.kernel.util.test
An attribute used for testing that is never valid.
InvalidStringAttribute() - Constructor for class ptolemy.kernel.util.test.InvalidStringAttribute
Construct an attribute in the default workspace with an empty string as its name.
InvalidStringAttribute(Workspace) - Constructor for class ptolemy.kernel.util.test.InvalidStringAttribute
Construct an attribute in the specified workspace with an empty string as a name.
InvalidStringAttribute(NamedObj, String) - Constructor for class ptolemy.kernel.util.test.InvalidStringAttribute
Construct an attribute with the given name contained by the specified entity.
InvariantViolationException - Exception in ptolemy.actor
Thrown when an invariant is violated.
InvariantViolationException(String) - Constructor for exception ptolemy.actor.InvariantViolationException
Construct an exception with a detail message.
InvariantViolationException(Nameable, String) - Constructor for exception ptolemy.actor.InvariantViolationException
Construct an exception with a detail message that includes the name of the first argument.
invdist_power_isosearch2d - Class in com.numericsolutions.geomodeltools
 
invdist_power_isosearch2d() - Constructor for class com.numericsolutions.geomodeltools.invdist_power_isosearch2d
 
inverse(Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new matrix that is constructed by inverting the input matrix.
inverse(double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new matrix that is constructed by inverting the input matrix.
inverse(float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Return a new matrix that is constructed by inverting the input matrix.
inverse() - Method in class ptolemy.math.Fraction
Find the multiplicative inverse of this fraction.
invert() - Method in class ptolemy.moml.unit.Unit
Invert this Unit.
invert() - Method in class ptolemy.moml.unit.UnitExpr
Create a new UnitExpr that is the inverse of this UnitExpr.
invert() - Method in class ptolemy.moml.unit.UnitTerm
Invert this UnitTerm.
invoke(Object[]) - Method in class ptolemy.data.expr.CachedMethod.ArrayMapCachedMethod
Invoke the method represented by this CachedMethod.
invoke(Object[]) - Method in class ptolemy.data.expr.CachedMethod.BaseConvertCachedMethod
 
invoke(Object[]) - Method in class ptolemy.data.expr.CachedMethod
Apply the operation represented by this object to the specified arguments.
invoke(Object[]) - Method in class ptolemy.data.expr.CachedMethod.MatrixMapCachedMethod
Run method represented by this cachedMethod.
invoke(Object, Method, Object[]) - Method in class ptolemy.gui.MacOSXAdapter
Invoke a method.
invokeFunction(String, Object...) - Method in class org.kepler.scriptengine.java.JavaScriptEngine
 
invokeMethod(Object, String, Object...) - Method in class org.kepler.scriptengine.java.JavaScriptEngine
 
InvokeService - Class in org.geon
Invoking the service model
InvokeService(CompositeEntity, String) - Constructor for class org.geon.InvokeService
Construct an actor with the given container and name.
IOPort - Class in ptolemy.actor
This class supports exchanging data between entities via message passing.
IOPort() - Constructor for class ptolemy.actor.IOPort
Construct an IOPort with no container and no name that is neither an input nor an output.
IOPort(Workspace) - Constructor for class ptolemy.actor.IOPort
Construct a port in the specified workspace with an empty string as a name.
IOPort(ComponentEntity, String) - Constructor for class ptolemy.actor.IOPort
Construct an IOPort with a containing actor and a name that is neither an input nor an output.
IOPort(ComponentEntity, String, boolean, boolean) - Constructor for class ptolemy.actor.IOPort
Construct an IOPort with a container and a name that is either an input, an output, or both, depending on the third and fourth arguments.
ioPort() - Method in class ptolemy.domains.de.kernel.DEEvent
Return the destination IO port of this event.
IOPORT_COORDINATES - Static variable in class ptolemy.vergil.actor.ExternalIOPortController
Polygon coordinates for input output port.
IOPortController - Class in ptolemy.vergil.actor
This class provides interaction with nodes that represent Ptolemy II ports on an actor.
IOPortController(GraphController) - Constructor for class ptolemy.vergil.actor.IOPortController
Create a port controller associated with the specified graph controller.
IOPortController(GraphController, AttributeController.Access) - Constructor for class ptolemy.vergil.actor.IOPortController
Create a port controller associated with the specified graph controller.
IOPortController.EntityPortRenderer - Class in ptolemy.vergil.actor
Render the ports of components as triangles.
IOPortEvent - Class in ptolemy.actor
An event that is published by an IOPort when a token or tokens are sent or received.
IOPortEvent(IOPort, int, int, boolean, Token[], int) - Constructor for class ptolemy.actor.IOPortEvent
Create a new port event with the given parameters.
IOPortEvent(IOPort, int, int, boolean, Token) - Constructor for class ptolemy.actor.IOPortEvent
Create a new port event with the given parameters.
IOPortEvent(IOPort, IOPort, boolean, int, boolean, Token) - Constructor for class ptolemy.actor.IOPortEvent
Create a new port event with the given parameters.
IOPortEventListener - Interface in ptolemy.actor
Listen for events that are issued during the send(), broadcast(), sendInside(), get(), getInside() function calls of an IOPort.
IOPortRefillEvent - Class in org.kepler.provenance
An event that is published when a port is refilled.
IOPortRefillEvent(IOPort, int) - Constructor for class org.kepler.provenance.IOPortRefillEvent
Construct a new IOPortRefillEvent.
IORelation - Class in ptolemy.actor
This class mediates connections between ports that can send data to one another via message passing.
IORelation() - Constructor for class ptolemy.actor.IORelation
Construct a relation in the default workspace with an empty string as its name.
IORelation(Workspace) - Constructor for class ptolemy.actor.IORelation
Construct a relation in the specified workspace with an empty string as a name.
IORelation(CompositeEntity, String) - Constructor for class ptolemy.actor.IORelation
Construct a relation with the given name contained by the specified entity.
IPORT_COORDINATES - Static variable in class ptolemy.vergil.actor.ExternalIOPortController
Polygon coordinates for input port.
is32Bit() - Static method in class ptolemy.util.JVMBitWidth
Return true if this is a 32bit JVM.
isAbstract() - Method in class org.geon.DBConnectionToken.DBConnectionType
Return true if this type does not correspond to a single token class.
isAbstract() - Method in class org.kepler.gis.data.BoundingBoxToken.BoundingBoxType
 
isAbstract() - Method in class org.kepler.gis.data.GISToken.GISType
 
isAbstract() - Method in class org.kepler.gis.data.RasterToken.RasterType
 
isAbstract() - Method in class org.kepler.gis.data.VectorToken.VectorType
 
isAbstract() - Method in class ptolemy.data.type.ActorType
Return true if this type does not correspond to a single token class.
isAbstract() - Method in class ptolemy.data.type.ArrayType
Return true if this type does not correspond to a single token class.
isAbstract() - Method in class ptolemy.data.type.BaseType
Return true if this type does not correspond to a single token class.
isAbstract() - Method in class ptolemy.data.type.FixType
Return true if this type does not correspond to a single token class.
isAbstract() - Method in class ptolemy.data.type.FunctionType
Test if this type corresponds to an abstract token class.
isAbstract() - Method in class ptolemy.data.type.MatrixType
Return true if the element type is abstract.
isAbstract() - Method in class ptolemy.data.type.ObjectType
Return true if this type does not correspond to a single token class.
isAbstract() - Method in class ptolemy.data.type.RecordType
Return true if this type does not correspond to a single token class.
isAbstract() - Method in class ptolemy.data.type.StructuredType
Return true if this type does not correspond to a single token class.
isAbstract() - Method in class ptolemy.data.type.test.TestToken.TestType
Return true if this type does not correspond to a single token class.
isAbstract() - Method in interface ptolemy.data.type.Type
Return true if this type does not correspond to a single token class.
isAbstract() - Method in class ptolemy.data.type.UnionType
Test if this type corresponds to an abstract token class.
isAction() - Method in class org.kepler.CommandLineArgument
Returns true if this CommandLineArgument is an action to run Kepler.
isActionWithAuthenticationDone - Static variable in class org.kepler.workflowscheduler.gui.SchedulerAbstractAction
 
isActive() - Method in class org.kepler.plotting.PlotEditor
 
isActive() - Method in class ptolemy.actor.process.Branch
Return true if this branch is active.
isActive() - Method in class ptolemy.actor.process.BranchController
Return true if this controller is active; return false otherwise.
isActorOfInterestForAddonController(NamedObj) - Method in interface ptolemy.vergil.actor.ActorInteractionAddon
Determine of a given actor is of interest for a desired action.
isActorOfInterestForLookInside(NamedObj) - Method in interface ptolemy.vergil.actor.ActorInteractionAddon
Determine of a given actor is of interest for a desired action.
isActorOfInterestForOpenInstance(NamedObj) - Method in interface ptolemy.vergil.actor.ActorInteractionAddon
Determine of a given actor is of interest for a desired action.
isAcyclic() - Method in class ptolemy.graph.DirectedGraph
Test if this graph is acyclic (is a DAG).
isAdv() - Method in class org.ecoinformatics.seek.querybuilder.DBQueryDef
Returns whether it considers the query to be "advanced"
An advanced query is one that was built with the advanced tab and then saved out.
isAlreadyRegistered(KeplerLSID) - Method in class org.kepler.kar.UploadToRepository
 
isApplet - Variable in class com.microstar.xml.demo.XmlApp
Flag to show whether we're running as an applet or application.
isApplet - Variable in class com.microstar.xml.demo.XmlApplet
Flag to show whether we're running as an applet or application.
isApplet() - Method in class org.ecoinformatics.seek.querybuilder.QBApp
Determines if this is an applet or application
isAssignedLSID(String) - Method in class org.ecoinformatics.seek.sms.KeplerLocalLSIDService
 
isAtomic() - Method in class ptolemy.kernel.ComponentEntity
Return true if the entity is atomic.
isAtomic() - Method in class ptolemy.kernel.CompositeEntity
Return false since CompositeEntities are not atomic.
isAtomicallyTaggable(Object) - Static method in class org.kepler.tagging.Tagging
 
isAuthenticated() - Method in class org.kepler.authentication.AuthenticationService
Note, currently unused, and authenticate(null) will cause NPE.
isAutoIncrement() - Method in class org.kepler.util.sql.Column
Returns true if column value is auto-incremented.
isBackwardTypeInferenceEnabled() - Method in interface ptolemy.actor.TypedActor
Look up the hierarchy to find the parameter enableBackwardTypeInference and return its value.
isBackwardTypeInferenceEnabled() - Method in class ptolemy.actor.TypedAtomicActor
Return true if backward type inference is enabled in the first opaque composite actor up the hierarchy, or false otherwise.
isBackwardTypeInferenceEnabled() - Method in class ptolemy.actor.TypedCompositeActor
Return true if backward type inference is enabled.
isBackwardTypeInferenceEnabled() - Method in class ptolemy.actor.TypeOpaqueCompositeActor
Return false because backward type inference is not implemented for this actor.
isBackwardTypeInferenceEnabled() - Method in class ptolemy.domains.modal.kernel.FSMActor
Return false because backward type inference is not implemented for this actor.
isBinFileLocal() - Method in class org.kepler.job.Job
 
isBitwiseAnd() - Method in class ptolemy.data.expr.ASTPtBitwiseNode
Return true if this operation represents a boolean AND operation.
isBitwiseNot() - Method in class ptolemy.data.expr.ASTPtUnaryNode
Return true if this node represents the bitwise negation of its child.
isBitwiseOr() - Method in class ptolemy.data.expr.ASTPtBitwiseNode
Return true if this operation represents a boolean OR operation.
isBitwiseXor() - Method in class ptolemy.data.expr.ASTPtBitwiseNode
Return true if this operation represents a boolean XOR operation.
isBlank() - Method in class org.kepler.reporting.roml.ReportLayout
 
isBlocked() - Method in class ptolemy.actor.process.BranchController
Return true if all of the branches assigned to this branch controller are blocked or if this branch controller has no branches; return false otherwise.
isBorderOpaque() - Method in class com.jgoodies.forms.factories.Borders.EmptyBorder
Returns whether or not the border is opaque.
isBorderOpaque() - Method in class org.kepler.reporting.gui.OvalBorder
 
isBusy() - Method in class org.kepler.objectmanager.cache.DataCacheObject
Returns whether it is busy getting the data
isCached(KeplerLSID) - Method in class org.kepler.kar.KARCacheManager
Deprecated.
Cached Kars now use the File as the primary key Use isCached(File) instead
isCached(File) - Method in class org.kepler.kar.KARCacheManager
Determine if the KAR represented by the supplied File has already been cached.
isCancelled() - Method in class org.ptolemy.commons.FutureValue
 
isCaptureActive() - Static method in class ptolemy.media.javasound.LiveSound
Return true if audio capture is currently active.
isCaptureActive() - Method in class ptolemy.media.javasound.LiveSoundCommon
Return true if audio capture is currently active.
isCaptureActive() - Method in interface ptolemy.media.javasound.LiveSoundInterface
Return true if audio capture is currently active.
isCellEditable(int, int) - Method in class org.ecoinformatics.seek.ecogrid.ServicesDisplayTableModel
Method for table editable
isCellEditable(int, int) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelAdv
Indicates if col and row is editable
isCellEditable(int, int) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelBase
Indicates if col and row is editable
isCellEditable(int, int) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelStd
Indicates if col and row is editable
isCellEditable(int, int) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableOverviewModel
Always return false
isCellEditable(int, int) - Method in class org.kepler.gui.ComponentLibraryPreferencesTab.ComponentSourceTableModel
 
isCellEditable(EventObject) - Method in class org.kepler.plotting.table.ColorTableCellEditor
 
isCellEditable(EventObject) - Method in class org.kepler.tagging.gui.ColorTableCellEditor
 
isCellEditable(int) - Method in class org.kepler.workflowrunmanager.gui.GroupableTableHeader
 
isCellEditable(int, int) - Method in class org.kepler.workflowrunmanager.gui.WorkflowRunManagerTableModel
 
isCentered() - Method in class ptolemy.vergil.icon.ShapeIcon
Return whether the figure should be centered on its origin.
isChannelSpecified(String) - Method in class ptolemy.domains.modal.kernel.AbstractActionsAttribute
Test if a channel number is associated with the given name.
isClass - Variable in class ptolemy.vergil.kernel.attributes.IDAttribute
A boolean indicating whether the container is a class or an instance.
isClassDefinition() - Method in class ptolemy.kernel.InstantiableNamedObj
Return true if this object is a class definition, which means that it can be instantiated.
isClassDefinition() - Method in interface ptolemy.kernel.util.Instantiable
Return true if this object is a class definition, which means that it can be instantiated.
isClassDefinition() - Method in class ptolemy.kernel.util.test.TestInstantiableAttribute
 
isClassDefinition() - Method in class ptolemy.kernel.util.test.TestInstantiableNamedObj
 
isClassDeprecated(String) - Static method in class org.kepler.kar.KarDoclet
Returns true if the given class name is deprecated.
isClosed() - Method in class ptolemy.domains.modal.kernel.ia.InterfaceAutomaton
Return true if this automaton does not have any input and output; false otherwise.
isCloseTo(Token, double) - Method in class org.kepler.gis.data.BoundingBoxToken
Test that the value of this Token is close to the first argument, where "close" means that the distance between them is less than or equal to the second argument.
isCloseTo(Token, double) - Method in class ptolemy.data.AbstractConvertibleToken
Test that the value of this token is close to the first argument, where "close" means that the distance between them is less than or equal to the second argument.
isCloseTo(Token, double) - Method in class ptolemy.data.AbstractNotConvertibleToken
Test that the value of this token is close to the first argument, where "close" means that the distance between them is less than or equal to the second argument.
isCloseTo(Token, double) - Method in class ptolemy.data.ActorToken
Test for closeness of the values of this Token and the argument Token.
isCloseTo(Token, double) - Method in class ptolemy.data.ArrayToken
Test that the value of this token is close to the first argument, where "close" means that the distance between them is less than or equal to the second argument.
isCloseTo(Token, double) - Method in class ptolemy.data.FunctionToken
Test for closeness of the values of this Token and the argument Token.
isCloseTo(Token, double) - Method in class ptolemy.data.MatrixToken
Test whether the value of this Token is close to the argument Token.
isCloseTo(Token, double) - Method in class ptolemy.data.ObjectToken
Test that the value of this token is close to the first argument, where "close" means that the distance between them is less than or equal to the second argument.
isCloseTo(Token, double) - Method in class ptolemy.data.ScalarToken
Test whether the value of this Token is close to the argument Token.
isCloseTo(Token) - Method in class ptolemy.data.Token
Test that the value of this Token is close to the argument Token.
isCloseTo(Token, double) - Method in class ptolemy.data.Token
Test that the value of this Token is close to the first argument, where "close" means that the distance between them is less than or equal to the second argument.
isCloseTo(Token, double) - Method in class ptolemy.data.XMLToken
Test that the value of this token is close to the first argument, where "close" means that the distance between them is less than or equal to the second argument.
isCloseTo(Complex) - Method in class ptolemy.math.Complex
Return true if the distance between this complex number and the argument is less than or equal to EPSILON.
isCloseTo(Complex, double) - Method in class ptolemy.math.Complex
Return true if the distance between this complex number and the first argument is less than or equal to the second argument.
isClosure() - Method in class org.ecoinformatics.seek.querybuilder.DBWhereOperator
Indicates whether it is a closure object
isColumn - Variable in class ptolemy.actor.lib.VectorAssembler
True if the output vector is a column matrix.
isCommandComplete(String) - Method in class org.sdm.spa.gui.DoubleShellTAPTableau
Return true if the specified command is complete (ready to be interpreted).
isCommandComplete(String) - Method in class org.sdm.spa.gui.UserInteractiveShell
Return true if the specified command is complete (ready to be interpreted).
isCommandComplete(String) - Method in class org.sdm.spa.TextualInteractionShell
Return true if the specified command is complete (ready to be interpreted).
isCommandComplete(String) - Method in class ptolemy.actor.gui.exec.ExecShellTableau
Return true if the specified command is complete (ready to be interpreted).
isCommandComplete(String) - Method in class ptolemy.actor.gui.ExpressionShellTableau
Return true if the specified command is complete (ready to be interpreted).
isCommandComplete(String) - Method in class ptolemy.actor.gui.ptjacl.TclShellTableau
Return true if the specified command is complete (ready to be interpreted).
isCommandComplete(String) - Method in class ptolemy.actor.gui.python.PythonShellTableau
Return true if the specified command is complete (ready to be interpreted).
isCommandComplete(String) - Method in class ptolemy.actor.lib.gui.InteractiveDialog
Return true if the specified command is complete (ready to be interpreted).
isCommandComplete(String) - Method in class ptolemy.actor.lib.gui.InteractiveShell
Return true if the specified command is complete (ready to be interpreted).
isCommandComplete(String) - Method in interface ptolemy.gui.ShellInterpreter
Return true if the specified command is complete (ready to be interpreted).
isCompatible(Type) - Method in class org.geon.DBConnectionToken.DBConnectionType
Test if the argument type is compatible with this type.
isCompatible(Type) - Method in class org.kepler.gis.data.BoundingBoxToken.BoundingBoxType
 
isCompatible(Type) - Method in class org.kepler.gis.data.GISToken.GISType
 
isCompatible(Type) - Method in class org.kepler.gis.data.RasterToken.RasterType
 
isCompatible(Type) - Method in class org.kepler.gis.data.VectorToken.VectorType
 
isCompatible(Type) - Method in class ptolemy.data.type.ActorType
Model if the argument type is compatible with this type.
isCompatible(Type) - Method in class ptolemy.data.type.ArrayType
Test if the argument type is compatible with this type.
isCompatible(Type) - Method in class ptolemy.data.type.BaseType
Test if the argument type is compatible with this type.
isCompatible(Type) - Method in class ptolemy.data.type.FixType
Test if the argument type is compatible with this type.
isCompatible(Type) - Method in class ptolemy.data.type.FunctionType
Test if the argument type is compatible with this type.
isCompatible(Type) - Method in class ptolemy.data.type.MatrixType
Test if the argument type is compatible with this type.
isCompatible(Type) - Method in class ptolemy.data.type.ObjectType
Return true if the specified type is less than or equal to this type.
isCompatible(Type) - Method in class ptolemy.data.type.RecordType
Test whether the argument type is compatible with this type (is less than or equal to this type in the type lattice).
isCompatible(Type) - Method in class ptolemy.data.type.test.TestToken.TestType
Test if the argument type is compatible with this type.
isCompatible(Type) - Method in class ptolemy.data.type.TupleType
Test if the argument type is compatible with this type.
isCompatible(Type) - Method in interface ptolemy.data.type.Type
Test if the argument type is compatible with this type.
isCompatible(Type) - Method in class ptolemy.data.type.UnionType
Test if the argument type is compatible with this type.
isComplex() - Method in class org.ecoinformatics.seek.querybuilder.DBWherePanel
Generates a textual representation of the "where" clause
isComplexRecurse(DBWhereOperator, String) - Method in class org.ecoinformatics.seek.querybuilder.DBWherePanel
Recurses through the "tree" of operators and creates a textual rendering of the operators and conditions
isComponentALayoutContainer() - Method in class org.mlc.swing.layout.ButtonBarComponentBuilder
 
isComponentALayoutContainer() - Method in interface org.mlc.swing.layout.ComponentBuilder
 
isComponentALayoutContainer() - Method in class org.mlc.swing.layout.DefaultComponentBuilder
 
isComponentALayoutContainer() - Method in class org.mlc.swing.layout.JListComponentBuilder
 
isComponentALayoutContainer() - Method in class org.mlc.swing.layout.JTableComponentBuilder
 
isComponentALayoutContainer() - Method in class org.mlc.swing.layout.JToolBarComponentBuilder
 
isComponentALayoutContainer() - Method in class org.mlc.swing.layout.JTreeComponentBuilder
 
isComponentALayoutContainer() - Method in class org.mlc.swing.layout.SeparatorComponentBuilder
 
isCongruent(ASTPtRootNode, Map) - Method in class ptolemy.data.expr.ASTPtBitwiseNode
Return true if this node is (hierarchically) congruent to the given node, under the given renaming of bound identifiers.
isCongruent(ASTPtRootNode, Map) - Method in class ptolemy.data.expr.ASTPtFunctionDefinitionNode
Return true if this node is (hierarchically) congruent to the given node, under the given renaming of bound identifiers.
isCongruent(ASTPtRootNode, Map) - Method in class ptolemy.data.expr.ASTPtLeafNode
Return true if this node is (hierarchically) congruent to the given node, under the given renaming of bound identifiers.
isCongruent(ASTPtRootNode, Map) - Method in class ptolemy.data.expr.ASTPtLogicalNode
Return true if this node is (hierarchically) congruent to the given node, under the given renaming of bound identifiers.
isCongruent(ASTPtRootNode, Map) - Method in class ptolemy.data.expr.ASTPtProductNode
Return true if this node is (hierarchically) congruent to the given node, under the given renaming of bound identifiers.
isCongruent(ASTPtRootNode, Map) - Method in class ptolemy.data.expr.ASTPtRecordConstructNode
Return true if this node is (hierarchically) congruent to the given node, under the given renaming of bound identifiers.
isCongruent(ASTPtRootNode, Map) - Method in class ptolemy.data.expr.ASTPtRelationalNode
Return true if this node is (hierarchically) congruent to the given node, under the given renaming of bound identifiers.
isCongruent(ASTPtRootNode, Map) - Method in class ptolemy.data.expr.ASTPtRootNode
Return true if this node is (hierarchically) congruent to the given node, under the given renaming of bound identifiers.
isCongruent(ASTPtRootNode, Map) - Method in class ptolemy.data.expr.ASTPtShiftNode
Return true if this node is (hierarchically) congruent to the given node, under the given renaming of bound identifiers.
isCongruent(ASTPtRootNode, Map) - Method in class ptolemy.data.expr.ASTPtSumNode
Return true if this node is (hierarchically) congruent to the given node, under the given renaming of bound identifiers.
isCongruent(ASTPtRootNode, Map) - Method in class ptolemy.data.expr.ASTPtUnaryNode
Return true if this node is (hierarchically) congruent to the given node, under the given renaming of bound identifiers.
isCongruent(ASTPtRootNode, Map) - Method in class ptolemy.data.expr.ASTPtUnionConstructNode
Return true if this node is (hierarchically) congruent to the given node, under the given renaming of bound identifiers.
isCongruent(Function) - Method in class ptolemy.data.expr.ExpressionFunction
Return true if this function is congruent to the given function.
isCongruent(Function) - Method in interface ptolemy.data.Function
Return true if this function is congruent to the given function.
isConnected() - Method in class org.kepler.workflowrunmanager.WorkflowRunManager
 
isConnectedToBoundary() - Method in class ptolemy.actor.process.BoundaryDetector
Return true if the receiver containing this boundary detector is connected to a boundary port.
isConnectedToBoundary() - Method in class ptolemy.actor.process.MailboxBoundaryReceiver
Return true if this receiver is connected to a boundary port.
isConnectedToBoundary() - Method in interface ptolemy.actor.process.ProcessReceiver
Return true if this receiver is connected to the inside of a boundary port.
isConnectedToBoundary() - Method in class ptolemy.domains.pn.kernel.PNQueueReceiver
Return true if this receiver is connected to the inside of a boundary port.
isConnectedToBoundaryInside() - Method in class ptolemy.actor.process.BoundaryDetector
Return true if the receiver containing this boundary detector is connected to the inside of an input boundary port; return false otherwise.
isConnectedToBoundaryInside() - Method in class ptolemy.actor.process.MailboxBoundaryReceiver
Return true if this receiver is connected to the inside of an input boundary port; return false otherwise.
isConnectedToBoundaryInside() - Method in interface ptolemy.actor.process.ProcessReceiver
Return true if this receiver is connected to the inside of a boundary port.
isConnectedToBoundaryInside() - Method in class ptolemy.domains.pn.kernel.PNQueueReceiver
Return true if this receiver is connected to the inside of a boundary port.
isConnectedToBoundaryOutside() - Method in class ptolemy.actor.process.BoundaryDetector
Return true if the receiver containing this boundary detector is connected to the outside of an output boundary port; return false otherwise.
isConnectedToBoundaryOutside() - Method in class ptolemy.actor.process.MailboxBoundaryReceiver
Return true if this receiver is connected to the outside of an output boundary port; return false otherwise.
isConnectedToBoundaryOutside() - Method in interface ptolemy.actor.process.ProcessReceiver
Return true if this receiver is connected to the outside of a boundary port.
isConnectedToBoundaryOutside() - Method in class ptolemy.domains.pn.kernel.PNQueueReceiver
Return true if this receiver is connected to the outside of a boundary port.
isConnectionOrigin() - Method in class org.sdm.spa.actors.transport.vo.ConnectionDetails
 
isConstant() - Method in class org.geon.DBConnectionToken.DBConnectionType
Test if this Type is UNKNOWN.
isConstant() - Method in class org.kepler.gis.data.BoundingBoxToken.BoundingBoxType
 
isConstant() - Method in class org.kepler.gis.data.GISToken.GISType
 
isConstant() - Method in class org.kepler.gis.data.RasterToken.RasterType
 
isConstant() - Method in class org.kepler.gis.data.VectorToken.VectorType
 
isConstant(Variable) - Method in class ptolemy.actor.util.ConstVariableModelAnalysis
Return true if the given variable is not reconfigured in the model.
isConstant() - Method in class ptolemy.data.expr.ASTPtRootNode
Return true if this node represents a constant value.
isConstant() - Method in class ptolemy.data.type.ActorType
Model if this Type is UNKNOWN.
isConstant() - Method in class ptolemy.data.type.ArrayType
Test if this ArrayType is a constant.
isConstant() - Method in class ptolemy.data.type.BaseType
Test if this Type is UNKNOWN.
isConstant() - Method in class ptolemy.data.type.FixType
Test if this Type is a constant.
isConstant() - Method in class ptolemy.data.type.FunctionType
Test if this FunctionType is a constant.
isConstant() - Method in class ptolemy.data.type.MatrixType
Test if this Type is a constant.
isConstant() - Method in class ptolemy.data.type.ObjectType
Test if the argument type is compatible with this type.
isConstant() - Method in class ptolemy.data.type.RecordType
Test if this RecordType is a constant.
isConstant() - Method in class ptolemy.data.type.test.TestToken.TestType
Test if this Type is UNKNOWN.
isConstant() - Method in class ptolemy.data.type.TupleType
Test if this TupleType is a constant.
isConstant() - Method in interface ptolemy.data.type.Type
Test if this Type is a constant.
isConstant() - Method in class ptolemy.data.type.UnionType
Test if this UnionType is a constant.
isConsumerReceiver() - Method in class ptolemy.actor.process.MailboxBoundaryReceiver
Return true if this is a consumer receiver; return false otherwise.
isConsumerReceiver() - Method in interface ptolemy.actor.process.ProcessReceiver
Return true if this receiver is a consumer receiver.
isConsumerReceiver() - Method in class ptolemy.domains.pn.kernel.PNQueueReceiver
Return true if this receiver is connected to the boundary.
isContained(KeplerLSID) - Method in class org.kepler.objectmanager.cache.CacheManager
return true of the given lsid has an associated object in the cache
isContainer - Variable in class org.mlc.swing.layout.ComponentDef
 
isCQAdaptive - Variable in class ptolemy.domains.de.kernel.DEDirector
Specify whether the calendar queue adjusts its bin number at run time.
isCRSWGS84(CoordinateReferenceSystem) - Static method in class org.kepler.gis.util.GISUtilities
Check if a projection is WGS84 / EPSG 4326.
isDataFlavorSupported(DataFlavor) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
Returns whether the requested flavor is supported by this object.
isDataFlavorSupported(DataFlavor) - Method in class org.ecoinformatics.seek.querybuilder.DBTableField
Returns whether the requested flavor is supported by this object.
isDataFlavorSupported(DataFlavor) - Method in class org.kepler.reporting.gui.DragAndDropPanel
One of three methods defined by the Transferable interface.
isDataFlavorSupported(DataFlavor) - Method in class org.kepler.reporting.gui.JLabelTransferable
 
isDataFlavorSupported(DataFlavor) - Method in class org.kepler.sms.gui.NamedOntClassTransferable
Return true if the given data flavor is supported.
isDataFlavorSupported(DataFlavor) - Method in class org.mlc.swing.layout.TransferableWrapper
Return true if the data flavor is supported.
isDataFlavorSupported(DataFlavor) - Method in class ptolemy.vergil.toolbox.PtolemyTransferable
Return true if the given data flavor is supported.
isDebugging - Static variable in class org.ecoinformatics.seek.datasource.eml.eml2.EML2MetadataSpecification
 
isDebugging - Static variable in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
 
isDebugging - Static variable in class org.ecoinformatics.seek.ecogrid.EcogridWriter
 
isDebugging - Static variable in class org.kepler.monitor.figure.BaseFigure
 
isDebugging() - Method in class ptolemy.actor.lib.python.PythonScript
Return true if this actor has at least one debug listener.
isDeeplyConnected(ComponentPort) - Method in class ptolemy.kernel.ComponentPort
Return true the the given port is deeply connected with this port.
isDefault() - Method in class ptolemy.domains.modal.kernel.Transition
Return true if this transition is a default transition.
isDeferringChangeRequests() - Method in class ptolemy.actor.lib.hoc.LifeCycleManager
Override the base class to not delegate up the hierarchy and to indicate only whether this composite is locally deferring change requests.
isDeferringChangeRequests() - Method in interface ptolemy.kernel.util.Changeable
Return true if setDeferringChangeRequests(true) has been called to specify that change requests should be deferred.
isDeferringChangeRequests() - Method in class ptolemy.kernel.util.NamedObj
Return true if setDeferringChangeRequests(true) has been called to specify that change requests should be deferred.
isDependencyVersioningInfoComplete(List<String>) - Static method in class org.kepler.kar.ModuleDependencyUtil
Check if versions of dependencies are all complete, defined as having specified a Major, Minor, and Micro number.
isDirected(Object) - Method in class ptolemy.vergil.actor.ActorGraphModel.LinkModel
Return true if this edge is directed.
isDirected(Object) - Method in class ptolemy.vergil.modal.FSMGraphModel.ArcModel
Return true if this edge is directed.
isDirty(boolean) - Method in class org.kepler.configuration.ConfigurationProperty
returns true if this property has changed since it was last saved
isDirty() - Method in class org.kepler.configuration.ConfigurationProperty
returns this congifuration property's dirty flag
isDirty() - Method in class org.kepler.configuration.RootConfigurationProperty
returns true if any of the properties in this RootConfigurationProperty have been changed.
isDisjointWith(NamedOntClass) - Method in class org.kepler.sms.NamedOntClass
 
isDisplayed() - Method in interface org.ecoinformatics.seek.querybuilder.DBDisplayItemIFace
Return whether it is being displayed
isDisplayed() - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
Returns whether the item is to be "displayed" in the select statment
isDisplayed() - Method in class org.ecoinformatics.seek.querybuilder.DBTableField
Return whether it is being displayed
isDisposed() - Method in class ptolemy.gui.Top
Return true if this frame has been disposed.
isDone() - Method in class org.ptolemy.commons.FutureValue
 
isDownloadable() - Method in class org.kepler.objectmanager.data.db.Entity
Return this entity is downloadable or not.
isDragOver() - Method in class org.ecoinformatics.seek.querybuilder.DBTableField
Returns if it is currently be dragged over
isDragOver() - Method in interface org.ecoinformatics.seek.querybuilder.DBWhereIFace
Returns if it is being dragged over.
isDragOver() - Method in class org.ecoinformatics.seek.querybuilder.DBWhereListCellBase
Returns if it is currently be dragged over
isDropIntoEnabled() - Method in class ptolemy.vergil.basic.EditorDropTarget
Return true if the feature is enabled that a a drop onto an instance of NamedObj results in that NamedObj containing the dropped object.
isEditable() - Method in class ptolemy.actor.gui.Tableau
Return true if the tableau is editable.
isEditableColumns(int) - Static method in class org.kepler.plotting.Row
 
isEditingEnabled() - Method in class org.kepler.gui.lsid.LSIDViewer
 
isEmbedded() - Method in class ptolemy.actor.Director
Return true if this director is embedded inside an opaque composite actor contained by another composite actor.
isEmbedded() - Method in interface ptolemy.actor.util.PeriodicDirector
Return true if this director is embedded inside an opaque composite actor contained by another composite actor.
isEmpty() - Method in class org.kepler.objectmanager.cache.DataCacheObject
Returns whether it is in empty state
isEmpty() - Method in class ptolemy.actor.util.CalendarQueue
Return true if the queue is empty, and false otherwise.
isEmpty() - Method in class ptolemy.actor.util.TotallyOrderedSet
Return true if the set is empty.
isEmpty() - Method in class ptolemy.domains.de.kernel.DECQEventQueue
Return true if this event queue is empty.
isEmpty() - Method in interface ptolemy.domains.de.kernel.DEEventQueue
Return true if this event queue is empty.
isEmpty() - Method in class ptolemy.domains.modal.kernel.ia.InterfaceAutomaton
Return true if this automaton is empty; false otherwise.
isEmpty() - Method in class ptolemy.domains.modal.kernel.RelationList
Return true if the relation list is empty.
isEmpty() - Method in class ptolemy.domains.sdf.kernel.ArrayFIFOQueue
Return true if the number of objects in the queue is zero.
isEmpty() - Method in class ptolemy.graph.LabeledList
Returns true if this list contains no elements.
isEmpty() - Method in class ptolemy.util.MultiHashMap
Return whether or not this multimap is empty.
isEnabled() - Method in class org.kepler.provenance.ProvenanceRecorder
Return true if provenance output is turned on.
isEnabled() - Method in class org.kepler.workflowscheduler.gui.Schedule
If the scheduler is enabled
isEnabled() - Method in class ptolemy.domains.modal.kernel.Transition
Return true if the transition is enabled, that is the guard is true, and false if the guard evaluates to false.
isEnabled(ParserScope) - Method in class ptolemy.domains.modal.kernel.Transition
Return true if the transition is enabled, that is the guard is true, and false if the guard evaluates to false.
isEnabled() - Method in class ptolemy.vergil.debugger.DebugController
Determine whether debugging is enabled on the set of actors.
isEndOfResultset() - Method in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource
This method will determine if the resultset is complete.
isEqualTo(Token) - Method in class org.kepler.gis.data.BoundingBoxToken
Test for equality of the values of this Token and the argument Token.
isEqualTo(Token) - Method in class org.kepler.gis.data.RasterToken
Test for equality of the values of this Token and the argument Token.
isEqualTo(Token) - Method in class org.kepler.gis.data.VectorToken
Test for equality of the values of this Token and the argument Token.
isEqualTo(Token) - Method in class ptolemy.data.AbstractConvertibleToken
Test for equality of the values of this Token and the argument Token.
isEqualTo(Token) - Method in class ptolemy.data.AbstractNotConvertibleToken
Test for equality of the values of this token and the argument token.
isEqualTo(Token) - Method in class ptolemy.data.ActorToken
Model for equality of the values of this Token and the argument Token.
isEqualTo(Token) - Method in class ptolemy.data.FunctionToken
Test for equality of the values of this Token and the argument Token.
isEqualTo(Token) - Method in class ptolemy.data.MatrixToken
Test for equality of the values of this Token and the argument Token.
isEqualTo(Token) - Method in class ptolemy.data.ObjectToken
Compare this ObjectToken to the given argument, and return true if the values contained in the two are the same Java object.
isEqualTo(Token) - Method in class ptolemy.data.ScalarToken
Test for equality of the values of this Token and the argument Token.
isEqualTo(Token) - Method in class ptolemy.data.Token
Test for equality of the values of this Token and the argument Token.
isEqualTo(Token) - Method in class ptolemy.data.TupleToken
Return a true-valued token if the argument is equal to this one.
isEqualTo(Token) - Method in class ptolemy.data.type.test.TestToken
Test for equality of the values of this Token and the argument Token.
isEquivalent(NamedOntClass) - Method in class org.kepler.sms.NamedOntClass
 
isError() - Method in class org.kepler.objectmanager.cache.DataCacheObject
Returns whether it is in error state
isErrorForExecution(KeplerLSID) - Method in class org.kepler.provenance.DefaultQuery
 
isErrorForExecution(KeplerLSID) - Method in interface org.kepler.provenance.Queryable
Returns true if the execution had an error.
isErrorForExecution(KeplerLSID) - Method in class org.kepler.provenance.sql.SQLQueryV8
Returns true if the execution had an error.
isErrorReported() - Method in class ptolemy.kernel.util.ChangeRequest
Return true if setErrorReported() has been called with a true argument.
isErrorTransition() - Method in class ptolemy.domains.modal.kernel.Transition
Return true if this transition is an error transition.
isEvaluated() - Method in class ptolemy.data.expr.ASTPtRootNode
Return true if this node has had its token value set to something other than null.
isExecutingUnderResourceManager() - Static method in class org.kepler.ddp.Utilities
Returns true if an environment variable is set when executing under a resource manager such as PBS or SLURM.
isExitingAfterWrapup() - Method in class ptolemy.actor.Manager
Return true if exitAfterWrapup() was called.
isExpired() - Method in class org.kepler.authentication.ProxyEntity
Check if the proxy is expired or not
isExtensionListInDescription() - Method in class org.ecoinformatics.seek.querybuilder.DBFileFilter
Returns whether the extension list (.jpg, .gif, etc) should show up in the human readable mDescription.
isFelsic() - Method in class org.geon.RockSample
 
isFileRepoDirectory(File) - Method in class org.kepler.objectmanager.cache.LocalRepositoryManager.LocalRepository
Returns true if the given file is one of the directories of this repository.
isFinalState - Variable in class ptolemy.domains.modal.kernel.State
An indicator of whether this state is a final state.
isFireFunctional() - Method in class ptolemy.actor.AtomicActor
Return true.
isFireFunctional() - Method in class ptolemy.actor.CompositeActor
If this actor is opaque, invoke the isFireFunctional() method of the local director and return its result.
isFireFunctional() - Method in class ptolemy.actor.Director
Return false.
isFireFunctional() - Method in interface ptolemy.actor.Executable
Return true if this executable does not change state in either the prefire() or the fire() method.
isFireFunctional() - Method in class ptolemy.actor.parameters.ParameterSet
Return true.
isFireFunctional() - Method in class ptolemy.actor.parameters.SharedParameter
Return true.
isFireFunctional() - Method in class ptolemy.actor.sched.FixedPointDirector
Return true if all the controlled actors' isFireFunctional() methods return true.
isFireFunctional() - Method in class ptolemy.domains.modal.kernel.FSMActor
Return false.
isForcedCleanup() - Method in class org.sdm.spa.actors.transport.FileCopierBase
 
isForeignKey(String) - Method in class org.kepler.util.sql.Table
Returns true if column references another table.
isFull() - Method in class ptolemy.actor.util.FIFOQueue
Return true if the number of objects in the queue equals the queue capacity.
isFull() - Method in class ptolemy.domains.sdf.kernel.ArrayFIFOQueue
Return true if the number of objects in the queue equals the queue capacity.
isFunction() - Method in class ptolemy.data.expr.CachedMethod
Return true if this instance represents a function (vs. a method).
isGlobalDecorator() - Method in class ptolemy.data.expr.ConstraintMonitor
isGlobalDecorator() - Method in interface ptolemy.kernel.util.Decorator
Return true if this decorator should decorate objects across opaque hierarchy boundaries.
isGreaterThan(PartiallyOrderedToken) - Method in class ptolemy.data.DateToken
Check whether the value of this token is strictly greater than that of the argument token.
isGreaterThan(ScalarToken) - Method in class ptolemy.data.ScalarToken
Check whether the value of this token is strictly greater than that of the argument token.
isGroupLinked(Relation) - Method in class ptolemy.kernel.Port
Return true if the given relation or one in its relation group is linked to this port.
isHeaderEditable - Variable in class org.kepler.workflowrunmanager.gui.ColumnGroup
 
isHeaderEditable() - Method in class org.kepler.workflowrunmanager.gui.ColumnGroup
 
isHistory() - Method in class ptolemy.domains.modal.kernel.Transition
Return true if this transition is a history transition.
isHorizontal() - Method in class com.jgoodies.forms.layout.ColumnSpec
Returns if this is a horizontal specification (vs. vertical).
isHorizontal() - Method in class com.jgoodies.forms.layout.RowSpec
Returns if this is a horizontal specification (vs. vertical).
isIdentifier() - Method in class ptolemy.data.expr.ASTPtLeafNode
Return true if the leaf is an identifier that must be evaluated in scope.
isImmediate() - Method in class ptolemy.domains.modal.kernel.Transition
Return true if this transition is immediate.
isImportedExecution(KeplerLSID) - Method in class org.kepler.provenance.DefaultQuery
 
isImportedExecution(KeplerLSID) - Method in interface org.kepler.provenance.Queryable
See if an execution appears to be imported.
isImportedExecution(KeplerLSID) - Method in class org.kepler.provenance.sql.SQLQueryV8
See if an execution appears to be imported.
isIndependent(Variable) - Method in class ptolemy.actor.util.ConstVariableModelAnalysis
Return true if the variable has been analyzed by this analysis and it depends on no other parameters.
isIndeterminate() - Method in class org.kepler.monitor.figure.ProgressBarFigure
Tells if this progress bar is indeterminate.
isInfinite() - Method in class ptolemy.actor.util.Time
Return true if the current time value is infinite.
isInfinite() - Method in class ptolemy.math.Complex
Return true if either the real or imaginary part is infinite.
isInfinite(Complex) - Static method in class ptolemy.math.Complex
Return true if either the real or imaginary part of the given complex number is infinite.
isInitialState - Variable in class ptolemy.domains.modal.kernel.State
An indicator of whether this state is the initial state.
isInLibrary() - Method in class org.kepler.sms.OntologyRow
 
isInLocalRepository(File) - Method in class org.kepler.objectmanager.cache.LocalRepositoryManager
Given a file, return true if it is in a local repository, false if it is not.
isInput() - Method in class org.kepler.sms.KeplerCompositeIOPort
 
isInput() - Method in class org.kepler.sms.KeplerRefinementIOPort
 
isInput() - Method in class org.kepler.sms.KeplerVirtualIOPort
 
isInput() - Method in class ptolemy.actor.IOPort
Return true if the port is an input.
isInsertionOnly() - Method in class org.kepler.tagging.TagReloadType.SearchStringChange
 
isInsideBoundary() - Method in class ptolemy.actor.process.BoundaryDetector
Return true if the receiver containing this boundary detector is contained on the inside of a boundary port.
isInsideBoundary() - Method in class ptolemy.actor.process.MailboxBoundaryReceiver
Return true if this receiver is contained on the inside of a boundary port.
isInsideBoundary() - Method in interface ptolemy.actor.process.ProcessReceiver
Return true if this receiver is contained on the inside of a boundary port.
isInsideBoundary() - Method in class ptolemy.domains.pn.kernel.PNQueueReceiver
Return true if this receiver is contained on the inside of a boundary port.
isInsideConnected() - Method in class ptolemy.actor.IOPort
Return whether the port has relations connected on the inside.
isInsideGroupLinked(Relation) - Method in class ptolemy.kernel.ComponentPort
Return true if the given relation or one in its relation group is linked to this port on the inside.
isInsideLinked(Relation) - Method in class ptolemy.kernel.ComponentPort
Return true if the given relation is linked from inside.
isInstanceDoc() - Method in class ptolemy.vergil.actor.DocManager
Return true if the primary source of documentation is the instance.
isInstantiable() - Method in class org.geon.DBConnectionToken.DBConnectionType
Determine if this type corresponds to an instantiable token classes.
isInstantiable() - Method in class org.kepler.gis.data.BoundingBoxToken.BoundingBoxType
 
isInstantiable() - Method in class org.kepler.gis.data.GISToken.GISType
 
isInstantiable() - Method in class org.kepler.gis.data.RasterToken.RasterType
 
isInstantiable() - Method in class org.kepler.gis.data.VectorToken.VectorType
 
isInstantiable() - Method in class ptolemy.data.type.ActorType
Determine if this type corresponds to an instantiable token classes.
isInstantiable() - Method in class ptolemy.data.type.ArrayType
Determine if this type corresponds to an instantiable token class.
isInstantiable() - Method in class ptolemy.data.type.BaseType
Determine if this type corresponds to an instantiable token classes.
isInstantiable() - Method in class ptolemy.data.type.FixType
Test if this type corresponds to an instantiable token classes.
isInstantiable() - Method in class ptolemy.data.type.FunctionType
Test if this type corresponds to an instantiable token class.
isInstantiable() - Method in class ptolemy.data.type.MatrixType
Return true, indicating that instances of this type can exist.
isInstantiable() - Method in class ptolemy.data.type.ObjectType
Determine if this Type corresponds to an instantiable token class.
isInstantiable() - Method in class ptolemy.data.type.RecordType
Test if this type corresponds to an instantiable token class.
isInstantiable() - Method in class ptolemy.data.type.test.TestToken.TestType
Determine if this type corresponds to an instantiable token classes.
isInstantiable() - Method in class ptolemy.data.type.TupleType
Test if this type corresponds to an instantiable token class.
isInstantiable() - Method in interface ptolemy.data.type.Type
Determine if this Type corresponds to an instantiable token class.
isInstantiable() - Method in class ptolemy.data.type.UnionType
Test if this type corresponds to an instantiable token class.
isInTagBar() - Method in class org.kepler.sms.OntologyRow
 
isKARImported(String) - Method in class org.kepler.util.RemoteStoreRunsTracker
Check the tracker file to see if KAR was imported.
isKeepExisting() - Method in class org.ecoinformatics.seek.ecogrid.EcogridPreferencesTab
 
isKeplerLSIDFormat(String) - Static method in class org.kepler.objectmanager.lsid.KeplerLSID
 
isKnown() - Method in class ptolemy.actor.AbstractReceiver
Return true.
isKnown() - Method in class ptolemy.actor.IntermediateReceiver
Delegate to the internal receiver and return whatever it returns.
isKnown() - Method in class ptolemy.actor.IOPort
Return true if all channels of this port have known state; that is, the tokens on each channel are known, or each channel is known not to have any tokens.
isKnown(int) - Method in class ptolemy.actor.IOPort
Return true if the specified channel has known state; that is, the tokens on this channel are known, or this channel is known not to have any tokens.
isKnown() - Method in interface ptolemy.actor.Receiver
Return true if this receiver has known state; that is, the tokens in this receiver are known, or this receiver is known not to contain any tokens.
isKnown() - Method in class ptolemy.actor.sched.FixedPointReceiver
Return true if this receiver has status known, that is, this receiver either is either known to have a token or known to not to have a token.
isKnown() - Method in class ptolemy.actor.test.TestAbstractReceiver
Return true.
isKnown() - Method in class ptolemy.data.expr.Variable
Return true if the value of this variable is known, and false otherwise.
isKnown() - Method in class ptolemy.domains.modal.kernel.FSMReceiver
Return whether the state of the receiver is known.
isKnownInside(int) - Method in class ptolemy.actor.IOPort
Return true if the specified inside channel has known state; that is, the tokens on this channel are known, or this channel is known not to have any tokens.
isLafAqua() - Static method in class com.jgoodies.forms.util.Utilities
Lazily checks and answers whether the Aqua look&feel is active.
isLastEvent() - Method in class org.kepler.tagging.TagEvent
 
isLastEvent() - Method in class org.kepler.workflowrunmanager.WorkflowRunManagerEvent
 
isLattice() - Method in interface ptolemy.graph.CPO
Test if this CPO is a lattice.
isLattice() - Method in class ptolemy.graph.DirectedAcyclicGraph
Test if this CPO is a lattice.
isLazy() - Method in class ptolemy.data.expr.Variable
Return true if this variable is lazy.
isLeaf(Object) - Method in class org.kepler.gui.FilteredVisibleTreeModel
 
isLeaf(Object) - Method in class org.kepler.gui.SubsetWorkflowOutlineTreeModel
Returns true if the object is a leaf node.
isLeaf(Object) - Method in class org.kepler.gui.WorkflowOutlineTreeModel
Return true if the object is a leaf node.
isLeaf(Object) - Method in class org.kepler.profiling.gui.WorkflowOutlineTreeActorFireModel
Return true if the object is a leaf node.
isLeaf(Object) - Method in class org.sdm.spa.gui.XMLUIP.DomToTreeModelAdapter
 
isLeaf(Object) - Method in class ptolemy.vergil.tree.ClassAndEntityTreeModel
Return true if the object is a leaf node.
isLeaf(Object) - Method in class ptolemy.vergil.tree.CompositeTreeModel
Return true if the object is a leaf node.
isLeaf(Object) - Method in class ptolemy.vergil.tree.EntityTreeModel
Return true if the object is a leaf node.
isLeaf(Object) - Method in class ptolemy.vergil.tree.FullTreeModel
Return true if the object is a leaf node.
isLeaf(Object) - Method in class ptolemy.vergil.tree.VisibleTreeModel
Return true if the object is a leaf node.
isLeftToRight() - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Returns whether this builder fills the form left-to-right or right-to-left.
isLeftToRightButtonOrder() - Method in class com.jgoodies.forms.builder.ButtonBarBuilder
Returns whether button sequences will be ordered from left to right or from right to left.
isLeftToRightButtonOrder() - Method in class com.jgoodies.forms.util.LayoutStyle
Checks and answers whether buttons are typically ordered from left to right or from right to left.
isLenient - Variable in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource
This parameter determines if extra data columns that are NOT described in the EML should be ignored (isLenient=true) or if an error should be raised when the data and EML description do not match (isLenient=false) TRUE - extra data columns are ignored FALSE - an error is raised when data and metadata conflict
isLenient() - Method in class org.kepler.util.DelimitedReader
 
isLessThan(PartiallyOrderedToken) - Method in class ptolemy.data.DateToken
Check whether the value of this token is strictly less than that of the argument token.
isLessThan(DateToken) - Method in class ptolemy.data.DateToken
Check whether the value of this token is strictly less than that of the argument token.
isLessThan(PartiallyOrderedToken) - Method in interface ptolemy.data.PartiallyOrderedToken
Check whether the value of this token is strictly less than that of the argument token.
isLessThan(PartiallyOrderedToken) - Method in class ptolemy.data.ScalarToken
Check whether the value of this token is strictly less than that of the argument token.
isLessThan(ScalarToken) - Method in class ptolemy.data.ScalarToken
Check whether the value of this token is strictly less than that of the argument token.
isLessThan(VersionAttribute) - Method in class ptolemy.kernel.attributes.VersionAttribute
Return true if this version is less than the specified version.
isLibraryLocal(String) - Method in class org.kepler.sms.util.OntologyConfiguration
 
isLibraryOntology(String) - Method in class org.kepler.sms.util.OntologyConfiguration
 
isLinked(Relation) - Method in class ptolemy.kernel.Port
Return true if the given relation is linked to this port.
isLinked(Object) - Method in class ptolemy.kernel.util.CrossRefList
Return true if the specified container is linked to this list.
isListening(FiringEvent.FiringEventType) - Method in class ptolemy.vergil.debugger.DebugProfile
See if the DebugProfile contains this FiringEventType.
isLocal() - Method in class org.kepler.sms.NamedOntModel
 
isLocal() - Method in class org.kepler.sms.OntologyRow
 
isLocal() - Method in class org.sdm.spa.actors.transport.vo.ConnectionDetails
 
isLocalRepositoryName(String) - Method in class org.kepler.objectmanager.cache.LocalRepositoryManager
 
isLocalToInstance() - Method in class org.kepler.objectmanager.lsid.KeplerLSID
If this LSID was generated by this Kepler Instance return true else return false
isLocked() - Method in class org.kepler.reporting.roml.ReportLayout
 
isLogicalAnd() - Method in class ptolemy.data.expr.ASTPtLogicalNode
Return true if the node represents the logical AND of its children.
isLogicalOr() - Method in class ptolemy.data.expr.ASTPtLogicalNode
Return true if the node represents the logical OR of its children.
isMac() - Static method in class org.kepler.reporting.gui.ReportDesignerPanel
 
isMaster() - Method in class ptolemy.actor.gui.Tableau
Return true if this tableau is a master, which means that if that if its window is closed, then all other windows associated with the model are also closed.
isMenuPopulated() - Method in class ptolemy.gui.Top
Return true if the menu of this window has been populated.
isMethod() - Method in class ptolemy.data.expr.CachedMethod
Return true if this instance represents a method (vs. a function).
isMinus() - Method in class ptolemy.data.expr.ASTPtUnaryNode
Return true if this node represents the additive inverse of its child.
isModifiable() - Method in class ptolemy.actor.gui.Effigy
Return whether the model data is modifiable.
isModified() - Method in class org.kepler.reporting.roml.ReportLayout
 
isModified(SemanticTypeManagerMemento) - Method in class org.kepler.sms.SemanticTypeManager
Check if the manager of the given memento is different than this manager.
isModified() - Method in class ptolemy.actor.gui.Effigy
Return the data associated with the master effigy (as returned by masterEffigy()) has been modified.
isModified() - Method in class ptolemy.actor.gui.TableauFrame
Return true if the data associated with this window has been modified since it was first read or last saved.
isModified() - Method in class ptolemy.actor.gui.TextEffigy
Override the base class to compare the current text in the document against the original text.
isModified() - Method in class ptolemy.gui.Top
Return true if the data associated with this window has been modified since it was first read or last saved.
isModified() - Static method in class ptolemy.moml.MoMLParser
Return the value set by setModified(), or false if setModified() has yet not been called.
isMultiple() - Method in class org.kepler.objectmanager.data.db.Entity
Returns multiple.
isMultiport - Variable in class org.sdm.spa.util.ActorInspector.PortInfo
 
isMultiport() - Method in class ptolemy.actor.IOPort
Return true if the port is a multiport.
isMutable() - Method in class org.kepler.configuration.ConfigurationProperty
returns true if this propert is mutable.
isNamespacePrefixes() - Method in class org.kepler.reporting.rio.fop.tools.AbstractObjectReader
Returns true if the MS_PREFIXES feature is enabled.
isNamespaces() - Method in class org.kepler.reporting.rio.fop.tools.AbstractObjectReader
Returns true if the NAMESPACES feature is enabled.
isNaN() - Method in class ptolemy.math.Complex
Return true if either the real or imaginary part is NaN.
isNaN(Complex) - Static method in class ptolemy.math.Complex
Return true if either the real or imaginary part of the given Complex number is NaN.
isNegative() - Method in class ptolemy.actor.util.Time
Return true if the current time value is a negative value (including negative infinity).
isNegativeInfinite() - Method in class ptolemy.actor.util.Time
Return true if the current time value is a negative infinity.
isNewComponent(Component) - Method in class org.mlc.swing.layout.FormEditor
Returns true if the named component was created by hand in this session
isNil() - Method in class ptolemy.data.ArrayToken
Return true if the token is nil, (aka null or missing).
isNil() - Method in class ptolemy.data.BooleanToken
Return true if the token is nil, (aka null or missing).
isNil() - Method in class ptolemy.data.ComplexToken
Return true if the token is nil, (aka null or missing).
isNil() - Method in class ptolemy.data.DateToken
Return true if the token is nil, (aka null or missing).
isNil() - Method in class ptolemy.data.DoubleToken
Return true if the token is nil, (aka null or missing).
isNil() - Method in class ptolemy.data.FloatToken
Return true if the token is nil, (aka null or missing).
isNil() - Method in class ptolemy.data.IntToken
Return true if the token is nil, (aka null or missing).
isNil() - Method in class ptolemy.data.LongToken
Return true if the token is nil, (aka null or missing).
isNil() - Method in class ptolemy.data.ShortToken
Return true if the token is nil, (aka null or missing).
isNil() - Method in class ptolemy.data.SmoothToken
Return true if the token is nil, (aka null or missing).
isNil() - Method in class ptolemy.data.StringToken
Return true if the token is nil, (aka null or missing).
isNil() - Method in class ptolemy.data.Token
Return true if the token is nil, (aka null or missing).
isNil() - Method in class ptolemy.data.UnsignedByteToken
Return true if the token is nil, (aka null or missing).
isNode(Object) - Method in class ptolemy.vergil.basic.AbstractBasicGraphModel
Return true if the given object is a node in this model, which in this case means that it is an instance of Locatable.
isNondeterministic() - Method in class ptolemy.domains.modal.kernel.Transition
Return true if this transition is nondeterministic.
isNonInteractive() - Static method in class ptolemy.util.MessageHandler
Return true if the current process is a non-interactive session.
isNot() - Method in class ptolemy.data.expr.ASTPtUnaryNode
Return true if this node represents the boolean negation of its child.
isNull(int) - Method in class org.json.JSONArray
Determine if the value is null.
isNull(String) - Method in class org.json.JSONObject
Determine if the value associated with the key is null or if there is no value.
isNullAllowed() - Method in class org.kepler.util.sql.Column
Returns true if column can have null values.
isObject(Object) - Method in class org.kepler.sms.SemanticTypeManager
Check if the given object is being managed by this manager
isOpaque() - Method in interface org.kepler.ddp.actor.pattern.DDPPatternActor
Returns true if the actor is atomic, or is composite and contains a director.
isOpaque() - Method in class ptolemy.actor.CompositeActor
Return true if this actor contains a local director.
isOpaque() - Method in class ptolemy.actor.lib.hoc.ExecuteActor
Make this actor opaque.
isOpaque() - Method in class ptolemy.actor.lib.hoc.MobileModel
Return true.
isOpaque() - Method in class ptolemy.domains.continuous.lib.ContinuousTransferFunction
Return the opaqueness of this composite actor.
isOpaque() - Method in class ptolemy.domains.continuous.lib.LinearStateSpace
Return the opaqueness of this composite actor.
isOpaque() - Method in class ptolemy.domains.modal.kernel.FSMActor
Return true.
isOpaque() - Method in class ptolemy.kernel.ComponentEntity
Return true if the entity is opaque.
isOpaque() - Method in class ptolemy.kernel.ComponentPort
Return true if the container entity is opaque.
isOpaque() - Method in class ptolemy.kernel.CompositeEntity
Return false.
isOpen() - Method in class org.kepler.gui.PreferencesFrameTracker
 
isOpenable() - Method in class org.kepler.kar.KARFile
 
isOperator() - Method in class org.ecoinformatics.seek.querybuilder.DBWhereCondition
Indicates whether it is an operator
isOperator() - Method in interface org.ecoinformatics.seek.querybuilder.DBWhereIFace
Return whether it is an operator or not
isOperator() - Method in class org.ecoinformatics.seek.querybuilder.DBWhereListCellBase
Return if it is an operator
isOperator() - Method in class org.ecoinformatics.seek.querybuilder.DBWhereOperator
Indicates whether it is an operator
isOrderedInsert() - Method in class org.kepler.objectmanager.library.LibIndex
Return the current value of orderedInsert.
isOrphaned() - Method in class org.kepler.sms.NamedOntClass
 
isOrphaned() - Method in class org.kepler.tagging.gui.DeletableColorIconLabel
 
isOutOfRange(BigInteger, Precision) - Static method in class ptolemy.math.Overflow
Determines whether the given BigInteger unscaled value is considered an "underflow" or an "overflow" under the given Precision constraint.
isOutput() - Method in class org.kepler.sms.KeplerCompositeIOPort
 
isOutput() - Method in class org.kepler.sms.KeplerRefinementIOPort
 
isOutput() - Method in class org.kepler.sms.KeplerVirtualIOPort
 
isOutput() - Method in class ptolemy.actor.IOPort
Return true if the port is an output.
isOutput() - Method in class ptolemy.data.expr.FileParameter
Return whether the file is to be written to.
isOutsideBoundary() - Method in class ptolemy.actor.process.BoundaryDetector
Return true if the receiver containing this boundary detector is contained on the outside of a boundary port.
isOutsideBoundary() - Method in class ptolemy.actor.process.MailboxBoundaryReceiver
Return true if this receiver is contained on the outside of a boundary port.
isOutsideBoundary() - Method in interface ptolemy.actor.process.ProcessReceiver
Return true if this receiver is contained on the outside of a boundary port.
isOutsideBoundary() - Method in class ptolemy.domains.pn.kernel.PNQueueReceiver
Return true if this receiver is contained on the outside of a boundary port.
isOutsideConnected() - Method in class ptolemy.actor.IOPort
Return whether the port has relations connected on the outside.
isOverflow(BigInteger, Precision) - Static method in class ptolemy.math.Overflow
Determines whether the given BigInteger unscaled value is considered an "overflow" under the given Precision constraint.
isOverridden() - Method in class ptolemy.kernel.util.NamedObj
Return true if propagateValue() has been called, which indicates that the value of this object (if any) has been overridden from the default defined by its class definition.
isOverwriteable() - Method in class ptolemy.vergil.basic.export.web.DefaultTitle
Return true, since new title content should overwrite old title content.
isOverwriteable() - Method in class ptolemy.vergil.basic.export.web.HTMLImage
Return true, since old images should be overwritten with new.
isOverwriteable() - Method in class ptolemy.vergil.basic.export.web.HTMLText
Return true, since new content should overwrite old.
isOverwriteable() - Method in class ptolemy.vergil.basic.export.web.IconLink
Return true, since new content should overwrite old.
isOverwriteable() - Method in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Return true, since new content should overwrite old.
isOverwriteable() - Method in class ptolemy.vergil.basic.export.web.ParameterDisplayIconScript
Override base class since content here should only be added if it does not exist already.
isOverwriteable() - Method in class ptolemy.vergil.basic.export.web.Script
Return true, since new scripts and method calls should overwrite old.
isOverwriteable() - Method in class ptolemy.vergil.basic.export.web.Title
Return true, since new title content should overwrite old title content.
isOverwriteable() - Method in interface ptolemy.vergil.basic.export.web.WebExportable
Returns true if the content in the WebExporter for this object should be overwritten; false if the original content should be kept.
isPersistent() - Method in class ptolemy.kernel.util.ChangeRequest
Return false if the change represented by this request has been asserted to be non-persistent by calling setPersistent(false), and return true otherwise.
isPersistent() - Method in interface ptolemy.kernel.util.MoMLExportable
Return true if this object is persistent.
isPersistent() - Method in class ptolemy.kernel.util.NamedObj
Return true if this object is persistent.
isPlaybackActive() - Static method in class ptolemy.media.javasound.LiveSound
Return true if audio playback is currently active.
isPlaybackActive() - Method in class ptolemy.media.javasound.LiveSoundCommon
Return true if audio playback is currently active.
isPlaybackActive() - Method in interface ptolemy.media.javasound.LiveSoundInterface
Return true if audio playback is currently active.
isPositive() - Method in class ptolemy.actor.util.Time
Return true if the current time value is a positive value (including positive infinity).
isPositiveInfinite() - Method in class ptolemy.actor.util.Time
Return true if the current time value is a positive infinity.
isPreemptive() - Method in class ptolemy.domains.modal.kernel.Transition
Return true if this transition is preemptive.
isPreferableTo(CachedMethod.ArgumentConversion) - Method in class ptolemy.data.expr.CachedMethod.ArgumentConversion
Return true if this conversion is preferable to the given conversion.
isPreferableTo(CachedMethod.ArgumentConversion) - Method in class ptolemy.data.expr.CachedMethod.TypeArgumentConversion
Return true if this conversion is preferable to the given conversion.
IsPresent - Class in ptolemy.actor.lib.logic
On each firing, output true if the input is present and false otherwise.
IsPresent(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.logic.IsPresent
Construct an actor in the specified container with the specified name.
isPrimaryKey() - Method in class org.kepler.util.sql.Column
Returns true if column is primary key.
isProcessed() - Method in class org.ecoinformatics.seek.querybuilder.DBJoinPrcTable
 
isProducerReceiver() - Method in class ptolemy.actor.process.MailboxBoundaryReceiver
Return true if this is a producer receiver; return false otherwise.
isProducerReceiver() - Method in interface ptolemy.actor.process.ProcessReceiver
Return true if this receiver is a producer receiver.
isProducerReceiver() - Method in class ptolemy.domains.pn.kernel.PNQueueReceiver
Return true if this receiver is at a boundary.
isProvider() - Method in class ptolemy.component.MethodCallPort
Return true if this port provides the method, vs. requires the method.
isPublicFile() - Method in class org.kepler.kar.UploadToRepository
 
isPublishedPort(IOPort) - Method in class ptolemy.actor.CompositeActor
Return true if a port is in the published port list at this level.
isRange() - Method in class org.kepler.workflowrunmanager.DurationQueryParse
 
isRange() - Method in class org.kepler.workflowrunmanager.ExecIdQueryParse
 
isRange() - Method in class org.kepler.workflowrunmanager.StartTimeQueryParse
 
isReadBlocked() - Method in class ptolemy.actor.process.MailboxBoundaryReceiver
Return a true or false to indicate whether there is a read block on this receiver or not, respectively.
isReadBlocked() - Method in interface ptolemy.actor.process.ProcessReceiver
Determine whether this receiver is read blocked.
isReadBlocked() - Method in class ptolemy.domains.pn.kernel.PNQueueReceiver
Return a true or false to indicate whether there is a read block on this receiver or not, respectively.
isReady() - Method in class org.kepler.objectmanager.cache.DataCacheObject
Return the status of getting the data
isReady() - Method in class org.kepler.objectmanager.repository.EcogridRepositoryResults
returns true of the kar file from this result is ready for use
isRecordOrArrayOrMatrixToken(Token) - Static method in class org.kepler.reporting.rio.util.TokenUtil
 
isReference() - Method in class org.kepler.objectmanager.data.db.AttributeList
 
isReference() - Method in class org.kepler.reporting.rio.ItemValue
 
isRefreshFrameAfterSave() - Method in class org.kepler.gui.kar.ExportArchiveAction
 
isRegisterLSID() - Method in class org.kepler.kar.KARBuilder
 
isRegularOrLinkFile(String) - Method in class org.kepler.ssh.SftpExec
Checks if a given file is a regular file.
isRemoteFileDirectory(String) - Method in class org.kepler.ssh.SshExec
Anand: New method added to check if remote file is a directory Run "cd" command on given file.
isRemoteKarStore() - Method in class org.kepler.util.ProvenanceStore
 
isRemovable() - Method in class org.kepler.sms.NamedOntClass
 
isRemovable() - Method in class org.kepler.sms.RemovableSemanticType
 
isRenderedSelected(Figure) - Method in class ptolemy.vergil.kernel.AnimationRenderer
Test whether the given figure is currently rendered highlighted.
isReportLayout() - Method in class org.kepler.kar.KAREntry
Determine if the kar entry is report layout
isRevision() - Method in class org.kepler.kar.KARBuilder
 
isRowGroupingEnabled() - Method in class com.jgoodies.forms.builder.DefaultFormBuilder
Returns whether new data rows are being grouped or not.
isRunningUnderWebStart() - Static method in class ptolemy.actor.gui.JNLPUtilities
Return true if we are running under WebStart.
isSACol - Variable in class org.kepler.spark.mllib.SantaAnaDetect
Name of the boolean 'is Santa Ana Condition' column to append
isSatisfied(CPO) - Method in class ptolemy.graph.Inequality
Test if this inequality is satisfied with the current value of variables.
isSatisfied() - Method in class ptolemy.moml.unit.UnitEquation
Return true if this equation is satisfied.
isSchedulerURLConfigured() - Static method in class org.kepler.module.workflowschedulergui.Initialize
If user configured the schedulerURL on the configuration file.
isScheduleValid() - Method in class ptolemy.actor.sched.StaticSchedulingDirector
Return true if the current (cached) schedule is valid.
isScpPresent(ConnectionDetails, ConnectionDetails) - Method in class org.sdm.spa.actors.transport.ScpCopier
 
isSearch - Variable in class org.kepler.gui.AnnotatedPTree
 
isSelected() - Method in class org.ecoinformatics.seek.querybuilder.DBTableJoinItem
 
isSelected() - Method in class org.kepler.reporting.gui.DragAndDropPanel
 
isSelected() - Method in class org.kepler.reporting.rio.Item
 
isSelectingRemoteWorkflowDone() - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerParentPanel
Gets the status of selecting workflow being done
isSelfLoop() - Method in class ptolemy.graph.Edge
Return true if this is a self-loop edge.
isSettable() - Method in class ptolemy.data.type.MonotonicFunction
Return false.
isSettable() - Method in class ptolemy.data.type.TypeConstant
Return false since this term represent a constant.
isSettable() - Method in interface ptolemy.graph.InequalityTerm
Check whether this term can be set to a specific element of the underlying CPO.
isSettable() - Method in class ptolemy.graph.test.TestConstant
Return false.
isSettable() - Method in class ptolemy.graph.test.TestVariable
Return true.
isSigned() - Method in class ptolemy.math.Precision
Determine if the fixed point format is signed or not.
isSimpleDelimited() - Method in class org.kepler.objectmanager.data.db.Entity
If data file in this entity is simple delimited
isSingleItemKAR() - Method in class org.kepler.gui.kar.ExportArchiveAction
 
isSQLTab() - Method in class org.ecoinformatics.seek.querybuilder.QBApp
 
isStart() - Method in class ptolemy.actor.FiringEvent.FiringEventType
Return true if this event corresponds with a start event.
isStarted() - Method in class org.kepler.monitor.FigureUpdater
Tells if the figure is started.
isStepSizeAccurate() - Method in interface ptolemy.actor.continuous.ContinuousStepSizeController
Implementations of this method should return true if the current integration step size is sufficiently small for this actor to give accurate results.
isStepSizeAccurate() - Method in class ptolemy.domains.continuous.kernel.ContinuousDirector
Return true if all step size control actors agree that the current step is accurate and if there are no breakpoints in the past.
isStepSizeAccurate() - Method in class ptolemy.domains.continuous.kernel.ContinuousIntegrator
Return true if the state is resolved successfully.
isStepSizeAccurate() - Method in class ptolemy.domains.continuous.kernel.HybridModalDirector
Return true if all actors that were fired in the current iteration report that the step size is accurate and if no transition is enabled.
isStepSizeAccurate() - Method in class ptolemy.domains.continuous.lib.LevelCrossingDetector
Return false if with the current step size we miss a level crossing.
isStopFireRequested() - Method in class ptolemy.actor.process.ProcessDirector
Return true if a stop has been requested on the director.
isStopRequested() - Method in class ptolemy.actor.Director
Return true if stop has been requested.
isStrict() - Method in class ptolemy.actor.AtomicActor
Return true unless all input ports have non-empty default values.
isStrict() - Method in class ptolemy.actor.CompositeActor
Return false if all input ports have non-empty default values, or if this actor is opaque and the contained director indicates that it is non-strict.
isStrict() - Method in class ptolemy.actor.Director
Return true.
isStrict() - Method in interface ptolemy.actor.Executable
Return true if this executable is strict, meaning all inputs must be known before iteration.
isStrict() - Method in class ptolemy.actor.lib.BooleanMultiplexor
Return false.
isStrict() - Method in class ptolemy.actor.lib.Default
Return false.
isStrict() - Method in class ptolemy.actor.lib.MicrostepDelay
Return false indicating that this actor can be fired even if the inputs are unknown.
isStrict() - Method in class ptolemy.actor.lib.Multiplexor
Return false.
isStrict() - Method in class ptolemy.actor.lib.TimeDelay
Return false indicating that this actor can be fired even if the inputs are unknown.
isStrict() - Method in class ptolemy.actor.parameters.ParameterSet
Return false.
isStrict() - Method in class ptolemy.actor.parameters.SharedParameter
Return false.
isStrict() - Method in class ptolemy.actor.sched.FixedPointDirector
Return false.
isStrict() - Method in class ptolemy.domains.continuous.kernel.ContinuousIntegrator
Return false.
isStrict() - Method in class ptolemy.domains.continuous.lib.ContinuousTimeDelay
Override the base class to declare that the actor is nonstrict if it has an initial value token.
isStrict() - Method in class ptolemy.domains.continuous.lib.LevelCrossingDetector
Return false.
isStrict() - Method in class ptolemy.domains.continuous.lib.PeriodicSampler
Return false if the microstep value is zero.
isStrict() - Method in class ptolemy.domains.de.lib.Register
Indicate that this actor can fire even if the inputs are not known.
isStrict() - Method in class ptolemy.domains.de.lib.VariableDelay
Deprecated.
Return false indicating that this actor can be fired even if the inputs are unknown.
isStrict() - Method in class ptolemy.domains.modal.kernel.FSMActor
Return false.
isStrict() - Method in class ptolemy.domains.modal.kernel.FSMDirector
Return false.
isStringMode() - Method in class ptolemy.data.expr.Variable
Return true if this parameter is in string mode.
isStructuralChange() - Method in class ptolemy.kernel.util.ChangeRequest
Return whether this change request is a structural change request.
isSubclass(String, String) - Static method in class org.kepler.kar.KARFile
Determine if type is a subclass of getType.
isSubClass(NamedOntClass) - Method in class org.kepler.sms.NamedOntClass
 
isSubdirectory(File, File) - Static method in class org.kepler.util.FileUtil
 
isSubmitFileLocal() - Method in class org.kepler.job.Job
 
isSubstitutionInstance(Type) - Method in class org.geon.DBConnectionToken.DBConnectionType
Return true if the argument is a substitution instance of this type.
isSubstitutionInstance(Type) - Method in class org.kepler.gis.data.BoundingBoxToken.BoundingBoxType
 
isSubstitutionInstance(Type) - Method in class org.kepler.gis.data.GISToken.GISType
 
isSubstitutionInstance(Type) - Method in class org.kepler.gis.data.RasterToken.RasterType
 
isSubstitutionInstance(Type) - Method in class org.kepler.gis.data.VectorToken.VectorType
 
isSubstitutionInstance(Type) - Method in class ptolemy.data.type.ActorType
Return true if the argument is a substitution instance of this type.
isSubstitutionInstance(Type) - Method in class ptolemy.data.type.ArrayType
Return true if the specified type is a substitution instance of this type.
isSubstitutionInstance(Type) - Method in class ptolemy.data.type.BaseType
Return true if the argument is a substitution instance of this type.
isSubstitutionInstance(Type) - Method in class ptolemy.data.type.FixType
Test if the argument is a substitution instance of this type.
isSubstitutionInstance(Type) - Method in class ptolemy.data.type.FunctionType
Test if the specified type is a substitution instance of this type.
isSubstitutionInstance(Type) - Method in class ptolemy.data.type.MatrixType
Test if the argument is a substitution instance of this type.
isSubstitutionInstance(Type) - Method in class ptolemy.data.type.ObjectType
Return true if the specified type is a substitution instance of this type.
isSubstitutionInstance(Type) - Method in class ptolemy.data.type.RecordType
Test whether the specified type is a substitution instance of this type.
isSubstitutionInstance(Type) - Method in class ptolemy.data.type.test.TestToken.TestType
Return true if the argument is a substitution instance of this type.
isSubstitutionInstance(Type) - Method in class ptolemy.data.type.TupleType
Test if the specified type is a substitution instance of this type.
isSubstitutionInstance(Type) - Method in interface ptolemy.data.type.Type
Return true if the specified type is a substitution instance of this type.
isSubstitutionInstance(Type) - Method in class ptolemy.data.type.UnionType
Test if the specified type is a substitution instance of this type.
isSuppressingPropagation() - Method in class ptolemy.actor.parameters.SharedParameter
Return true if this instance is suppressing propagation.
isSuppressingPropagation() - Method in class ptolemy.actor.parameters.test.TestSharedParameter
Return true if this instance is suppressing propagation.
isSuppressingPropagationCount - Variable in class ptolemy.actor.parameters.test.TestSharedParameter
 
isSuppressVariableSubstitution() - Method in class ptolemy.data.expr.Variable
Return true if this variable is suppressing variable substitution.
isSystemEffigy() - Method in class ptolemy.actor.gui.Effigy
Return whether this effigy is a system effigy.
isTableFieldName(DSSchemaIFace, String, StringBuffer) - Static method in class org.ecoinformatics.seek.querybuilder.DBUIUtils
Returns true if the name is of format "table name"."
isTableNameExisted(String) - Method in class org.ecoinformatics.seek.dataquery.DBTableExistenceChecker
Check if a given table name existed
isTableNameOK(int) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelBase
Checks to see if there is a valid table name in the cell/row
isTagBarOntology(String) - Method in class org.kepler.sms.util.OntologyConfiguration
 
isTargetInstantiableAttribute() - Method in class ptolemy.vergil.actor.DocManager
Return true if the target class is a subclass of Attribute that has a two-argument constructor compatible where the first argument is a CompositeEntity and the second is a String.
isTargetInstantiableEntity() - Method in class ptolemy.vergil.actor.DocManager
Return true if the target class is a subclass of Entity that has a two-argument constructor compatible where the first argument is a CompositeEntity and the second is a String.
isTargetInstantiablePort() - Method in class ptolemy.vergil.actor.DocManager
Return true if the target class is a subclass of Port that has a two-argument constructor compatible where the first argument is a CompositeEntity and the second is a String.
isTermination() - Method in class ptolemy.domains.modal.kernel.Transition
Return true if this transition is a termination transition.
isTextComponent(Component) - Static method in class org.mlc.swing.layout.LayoutConstraintsManager
 
isThirdPartyOperation - Variable in class org.kepler.actor.ssh.ExecuteCmd
Specifying whether third party is to be defined.
isThreadActive(Thread) - Method in class ptolemy.actor.process.ProcessDirector
Return true if the specified thread has been registered with addThread() and has not been removed with removeThread().
isType(Object, String) - Method in class org.kepler.sms.SemanticTypeManager
Check if a concept id is assigned to an object in this manager.
isTypeAcceptable() - Method in class ptolemy.actor.lib.hoc.RefinementPort
Override the super class method to allow UNKNOWN type if this port does not have any inside links.
isTypeAcceptable() - Method in class ptolemy.actor.TypedIOPort
Check whether the current type of this port is acceptable.
isTypeAcceptable() - Method in class ptolemy.data.expr.Variable
Check whether the current type of this variable is acceptable.
isTypeAcceptable() - Method in interface ptolemy.data.type.Typeable
Check whether the type of this object is acceptable.
isTypeAcceptable() - Method in class ptolemy.domains.modal.modal.RefinementPort
Override the super class method to allow UNKNOWN type if this port does not have any inside links.
isUltramafic() - Method in class org.geon.RockSample
 
isUnchanged() - Method in class org.kepler.tagging.Range
 
isUnchanged() - Method in class org.kepler.tagging.Transition
 
isUnderflow(BigInteger, Precision) - Static method in class ptolemy.math.Overflow
Determines whether the given BigInteger unscaled value is considered an "underflow" under the given Precision constraint.
isUndoable() - Method in class ptolemy.moml.UndoContext
Tells if the current context is undoable or not.
isUnit() - Method in class ptolemy.moml.unit.UnitTerm
True if this is a Unit.
isUnitExpr() - Method in class ptolemy.moml.unit.UnitTerm
True is this is a UnitExpr.
isUnitless(int[]) - Static method in class ptolemy.data.unit.UnitUtilities
Return true if the given unit array is null, or the exponents for each index are zero.
isUnix() - Static method in class org.kepler.reporting.gui.ReportDesignerPanel
 
isURLExisted(String) - Method in class org.ecoinformatics.seek.dataquery.DBTableExistenceChecker
Check if a given url existed.
isValid() - Method in class org.kepler.kar.KAREntry
 
isValid() - Method in class org.kepler.kar.karxml.KarXml
 
isValid(String) - Static method in enum org.kepler.util.RemoteStoreRunsTracker.TrackerRunAttribute
check if attributeName is one specified in enum
isValid(String) - Static method in enum org.kepler.util.WorkflowRun.RunAttribute
check if attributeName is one specified in enum, or semanticType\\d* or error\\d*
isValid() - Method in class org.kepler.workflowrunmanager.DurationQueryParse
 
isValid() - Method in class org.kepler.workflowrunmanager.ExecIdQueryParse
 
isValid() - Method in class org.kepler.workflowrunmanager.StartTimeQueryParse
 
isValid() - Method in class org.kepler.workflowscheduler.gui.Schedule
If the schedule is valid
isValid() - Method in class ptolemy.actor.sched.Scheduler
Return true if the current schedule is valid.
isValid() - Method in class ptolemy.data.expr.CachedMethod.ArrayMapCachedMethod
Override the base class to correctly implement the isValid() method.
isValid() - Method in class ptolemy.data.expr.CachedMethod
Return true if the search for the method or function represented by this object found an invokeable method.
isValid() - Method in class ptolemy.data.expr.CachedMethod.MatrixMapCachedMethod
Override the base class to correctly implement the isValid() method.
isValidIdentifier(String) - Static method in class ptolemy.util.StringUtilities
Test whether a string is a valid Java identifier.
isValueAcceptable() - Method in class ptolemy.data.type.MonotonicFunction
Return true.
isValueAcceptable() - Method in class ptolemy.data.type.TypeConstant
Check whether the current type of this term is acceptable, and return true if it is.
isValueAcceptable() - Method in interface ptolemy.graph.InequalityTerm
Check whether the current value of this term is acceptable, and return true if it is.
isValueAcceptable() - Method in class ptolemy.graph.test.TestConstant
Check whether the current value of this term is acceptable, and return true if it is.
isValueAcceptable() - Method in class ptolemy.graph.test.TestVariable
Check whether the current value of this term is acceptable, and return true if it is.
isVariable() - Method in class ptolemy.moml.unit.UnitTerm
True if this a variable.
isVisible - Variable in class org.kepler.workflowrunmanager.gui.ColumnGroup
 
isVisible() - Method in class org.kepler.workflowrunmanager.gui.ColumnGroup
 
isVisible(NamedObj, Settable) - Static method in class ptolemy.actor.gui.Configurer
Return true if the given settable should be visible in a configurer panel for the specified target.
isWaitingForResource(Actor) - Method in interface ptolemy.actor.ActorExecutionAspect
Return whether an actor is currently waiting for a resource.
isWellFormedLSID(String) - Method in class org.ecoinformatics.seek.sms.KeplerLocalLSIDService
 
isWidthFixed() - Method in class ptolemy.actor.IORelation
Return true if the relation has a definite width (i.e., setWidth() has not been called with a value equal to WIDTH_TO_INFER.
isWindows() - Method in class org.geon.BrowserDisplay.LaunchBrowser
 
isWindows() - Static method in class org.kepler.reporting.gui.ReportDesignerPanel
 
isWithinClassDefinition() - Method in class ptolemy.kernel.InstantiableNamedObj
Return true if this object is a class definition or is within a class definition, which means that any container above it in the hierarchy is a class definition.
isWorkflow() - Method in class org.kepler.kar.karxml.KarXml.KarEntry
 
isWorkflowRunEngineConfigured() - Static method in class org.kepler.module.workflowschedulergui.Initialize
If user configured the workflow run engine part on the configuration file.
isWriteBlocked() - Method in class ptolemy.actor.process.MailboxBoundaryReceiver
Return a true or false to indicate whether there is a write block on this receiver or not.
isWriteBlocked() - Method in interface ptolemy.actor.process.ProcessReceiver
Determine whether this receiver is write blocked.
isWriteBlocked() - Method in class ptolemy.domains.pn.kernel.PNQueueReceiver
Return a true or false to indicate whether there is a write block on this receiver or not.
isZero() - Method in class ptolemy.actor.util.Time
Return true if the current time value is zero.
italic - Variable in class ptolemy.vergil.basic.export.web.Title
A boolean indicating whether the font should be italic.
italic - Variable in class ptolemy.vergil.kernel.attributes.AbstractTextAttribute
A boolean indicating whether the font should be italic.
Item - Class in org.kepler.reporting.rio
 
Item() - Constructor for class org.kepler.reporting.rio.Item
 
Item(ComboBox, String) - Constructor for class ptolemy.actor.gui.properties.ComboBox.Item
Construct an item with the given name contained by the specified entity.
ItemLabel - Class in org.kepler.reporting.rio
 
ItemLabel() - Constructor for class org.kepler.reporting.rio.ItemLabel
 
ItemLabel(String) - Constructor for class org.kepler.reporting.rio.ItemLabel
 
itemProperties - Variable in class org.kepler.reporting.rio.Item
 
ItemProperties - Class in org.kepler.reporting.rio
This class is intended as a very general holder for Item properties.
ItemProperties() - Constructor for class org.kepler.reporting.rio.ItemProperties
 
ItemsOfInterest - Class in org.kepler.reporting.roml
 
ItemsOfInterest() - Constructor for class org.kepler.reporting.roml.ItemsOfInterest
 
ItemsOfInterestPanel - Class in org.kepler.reporting.gui
 
ItemsOfInterestPanel(String, String) - Constructor for class org.kepler.reporting.gui.ItemsOfInterestPanel
 
ItemsOfInterestPanel(String, String, boolean) - Constructor for class org.kepler.reporting.gui.ItemsOfInterestPanel
 
ItemsOfInterestPanel.DragMouseAdapter - Class in org.kepler.reporting.gui
 
ItemsOfInterestPanel.Factory - Class in org.kepler.reporting.gui
A factory that creates the library panel for the editors.
ItemsOfInterestPanel.PlottingFactory - Class in org.kepler.reporting.gui
 
itemStateChanged(ItemEvent) - Method in class ptolemy.actor.gui.properties.ComboBox
React to an action of changing the selected item in the combo box.
itemStateChanged(ItemEvent) - Method in class ptolemy.gui.Query.QueryItemListener
Call all registered QueryListeners.
ItemValue - Class in org.kepler.reporting.rio
 
ItemValue() - Constructor for class org.kepler.reporting.rio.ItemValue
 
ItemValue(Token) - Constructor for class org.kepler.reporting.rio.ItemValue
 
itemWasAdded(DBSelectTableModelItem) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIAdv
Notification that an model item was added
itemWasAdded(DBSelectTableModelItem) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIBase
Notification that an model item was added.
itemWasAdded(DBSelectTableModelItem) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIStd
Notification that an model item was added
iterate(int) - Method in class ptolemy.actor.AtomicActor
Invoke a specified number of iterations of the actor.
iterate(int) - Method in class ptolemy.actor.CompositeActor
Invoke a specified number of iterations of the actor.
iterate(int) - Method in class ptolemy.actor.Director
Invoke a specified number of iterations of this director.
iterate(int) - Method in interface ptolemy.actor.Executable
Invoke a specified number of iterations of the actor.
iterate(int) - Method in class ptolemy.actor.lib.conversions.Round
Invoke a specified number of iterations of this actor.
iterate(int) - Method in class ptolemy.actor.lib.DB
Invoke a specified number of iterations of this actor.
iterate(int) - Method in class ptolemy.actor.lib.MathFunction
Deprecated.
Invoke a specified number of iterations of this actor.
iterate(int) - Method in class ptolemy.actor.lib.Ramp
Invoke a specified number of iterations of this actor.
iterate(int) - Method in class ptolemy.actor.lib.TrigFunction
Invoke a specified number of iterations of this actor.
iterate() - Method in class ptolemy.actor.Manager
Invoke one iteration of the model.
iterate(int) - Method in class ptolemy.actor.parameters.ParameterSet
Check to see whether the specified file has changed, and if so, re-read it.
iterate(FunctionToken, int, Token) - Static method in class ptolemy.data.expr.UtilityFunctions
Iterate the specified function to produce an array of the specified length.
iterate(int) - Method in class ptolemy.domains.modal.kernel.FSMActor
Invoke a specified number of iterations of the actor.
iterate(int, boolean) - Method in interface ptolemy.domains.sdf.optimize.BufferingProfile
Invoke a specified number of iterations of the actor in either shared or exclusive mode as indicated by the fireExclusive argument.
iterate(int, boolean) - Method in class ptolemy.domains.sdf.optimize.lib.DummyDisplay
Iterates the dummy display actor.
iterate(int, boolean) - Method in class ptolemy.domains.sdf.optimize.lib.DummySource
Iterate the actor.
iterate(int, boolean) - Method in class ptolemy.domains.sdf.optimize.SharedBufferTransformer
Invoke a specified number of iterations of the actor in either shared or exclusive mode as indicated by the fireExclusive argument.
IterateComposite(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.hoc.IterateOverArray.IterateComposite
Construct an actor with a name and a container.
iterateContainedActors() - Method in class ptolemy.actor.lib.hoc.ThreadedComposite
Iterate the contained actors of the container of this director.
IterateOverArray - Class in ptolemy.actor.lib.hoc
This actor iterates the contained actor or model over input arrays.
IterateOverArray(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.hoc.IterateOverArray
Create an actor with a name and a container.
IterateOverArray(Workspace) - Constructor for class ptolemy.actor.lib.hoc.IterateOverArray
Construct an IterateOverArray in the specified workspace with no container and an empty string as a name.
IterateOverArray.IterateComposite - Class in ptolemy.actor.lib.hoc
This is a specialized composite actor for use in IterateOverArray.
IterateOverArray.IteratePort - Class in ptolemy.actor.lib.hoc
This is a specialized port for IterateOverArray.
IterateOverArrayCloneTest - Class in ptolemy.actor.lib.hoc.test
Test for clone(Workspace) of IterateOverArray.
IterateOverArrayCloneTest() - Constructor for class ptolemy.actor.lib.hoc.test.IterateOverArrayCloneTest
 
IteratePort(Workspace) - Constructor for class ptolemy.actor.lib.hoc.IterateOverArray.IteratePort
Construct a port in the specified workspace with an empty string as a name.
IteratePort(TypedCompositeActor, String) - Constructor for class ptolemy.actor.lib.hoc.IterateOverArray.IteratePort
Create a new instance of a port for IterateOverArray.
iterateReturnType(Type, Type, Type) - Static method in class ptolemy.data.expr.UtilityFunctions
Return the return type of the iterate method, given the types of the argument.
ITERATING - Static variable in class ptolemy.actor.Manager
Indicator that the execution is in an iteration.
iterationOutput - Variable in class org.resurgence.actor.StatusChecker
The output in each iteration.
iterations - Variable in class org.cipres.kepler.PAUPInfer
The iteration times of the program execution is set in this parameter.
iterations - Variable in class org.kepler.spark.mllib.KMeansClustering
The maximum number of iterations to run.
iterations - Variable in class org.kepler.spark.mllib.KMeansModel
The maximum number of iterations to run.
iterations - Variable in class ptolemy.actor.sched.FixedPointDirector
The number of times that postfire may be called before it returns false.
iterations - Variable in class ptolemy.domains.ddf.kernel.DDFDirector
A Parameter representing the number of times that postfire() may be called before it returns false.
Iterations - Class in ptolemy.domains.de.lib.test
 
Iterations() - Constructor for class ptolemy.domains.de.lib.test.Iterations
 
iterations - Variable in class ptolemy.domains.sdf.kernel.SDFDirector
A Parameter representing the number of times that postfire may be called before it returns false.
ITERATIONS_NAME - Static variable in class ptolemy.domains.sdf.kernel.SDFDirector
The name of the iterations parameter: "iterations".
iterationsPerUpdate - Variable in class ptolemy.actor.lib.gui.ArrayPlotter
The number of iterations between updates of the display on the screen.
iterationsPerUpdate - Variable in class ptolemy.actor.lib.gui.ArrayPlotterXY
The number of iterations between updates of the display on the screen.
iterator() - Method in class org.kepler.sms.NamedOntClass.IteratorIterable
 
iterator() - Method in class ptolemy.actor.sched.Schedule
Return an iterator over the schedule elements of this schedule.
iterator() - Method in class ptolemy.graph.LabeledList
Return an iterator over the elements in the list.
iterator() - Method in class ptolemy.graph.sched.Schedule
Return an iterator over the schedule elements of this schedule.
iterator() - Method in class ptolemy.kernel.attributes.VersionAttribute
Return an iterator over the elements of the version, each of which is a String.
IteratorIterable(Iterator<T>) - Constructor for class org.kepler.sms.NamedOntClass.IteratorIterable
 
itr - Variable in class org.kepler.data.conversion.binary.EnsembleActor
 

J

JAR - Static variable in class org.kepler.objectmanager.lsid.KeplerLSID
 
JarClassLoader - Class in org.kepler.objectmanager.classloader
 
JarClassLoader(URL[]) - Constructor for class org.kepler.objectmanager.classloader.JarClassLoader
Constructor (currently we only support url points to jar file rather than the directory
JARKAREntryHandler - Class in org.kepler.kar.handlers
A KAREntryHandler extension that saves JAR files that are in KAR files to somewhere on disk.
JARKAREntryHandler() - Constructor for class org.kepler.kar.handlers.JARKAREntryHandler
 
JARKAREntryHandler.Factory - Class in org.kepler.kar.handlers
A factory that creates a KAREntryHandler object.
jars - Variable in class org.kepler.ddp.actor.pattern.AtomicPatternActor
A comma-separated list of jars to use with this actor.
jars - Variable in class org.kepler.ddp.actor.pattern.SingleInputPatternActor
A comma-separated list of jars to use with this actor.
jarURLDirectories(URL) - Static method in class ptolemy.util.ClassUtilities
Return the directories in a jar URI, relative to the jar entry, if any. .
jarURLEntryResource(String) - Static method in class ptolemy.actor.gui.JNLPUtilities
Deprecated.
Use ptolemy.util.ClassUtilities#jarURLEntryResource(String)
jarURLEntryResource(String) - Static method in class ptolemy.util.ClassUtilities
Lookup a jar URL and return the resource.
Java - Class in org.kepler.scriptengine
An actor whose execution is defined by Java code.
Java(Workspace) - Constructor for class org.kepler.scriptengine.Java
Create a new Java in the specified workspace.
Java(CompositeEntity, String) - Constructor for class org.kepler.scriptengine.Java
Create a new Java with the given container and name.
JAVA_CLASS - Static variable in class org.kepler.objectmanager.lsid.KeplerLSID
 
JavaCompiler - Class in org.kepler.scriptengine.java
Simple interface to Java compiler using JSR 199 Compiler API.
JavaCompiler() - Constructor for class org.kepler.scriptengine.java.JavaCompiler
 
Javascript - Class in org.kepler.scriptengine
An actor whose execution is defined by a Javascript script.
Javascript(Workspace) - Constructor for class org.kepler.scriptengine.Javascript
Construct a new Javascript for a specified workspace.
Javascript(CompositeEntity, String) - Constructor for class org.kepler.scriptengine.Javascript
Construct a new Javascript with the given container and name.
JavaScriptEngine - Class in org.kepler.scriptengine.java
This is script engine for Java programming language.
JavaScriptEngine() - Constructor for class org.kepler.scriptengine.java.JavaScriptEngine
 
JavaScriptEngineFactory - Class in org.kepler.scriptengine.java
This is script engine factory for "Java" script engine.
JavaScriptEngineFactory() - Constructor for class org.kepler.scriptengine.java.JavaScriptEngineFactory
 
JavaScriptThisUpdate - Class in ptolemy.moml.filter
Add "this." to certain places in the script parameter of a JavaScript actor.
JavaScriptThisUpdate() - Constructor for class ptolemy.moml.filter.JavaScriptThisUpdate
 
JavaWordCount - Class in org.kepler.spark.examples
Example java classes.
JavaWordCount() - Constructor for class org.kepler.spark.examples.JavaWordCount
 
JavaWordCount.CoGroupCountWords - Class in org.kepler.spark.examples
 
JavaWordCount.ComparePairs - Class in org.kepler.spark.examples
 
JavaWordCount.CountWords - Class in org.kepler.spark.examples
 
JavaWordCount.CountWordsMap - Class in org.kepler.spark.examples
 
JavaWordCount.JoinFunction - Class in org.kepler.spark.examples
 
JavaWordCount.TokenizeLine - Class in org.kepler.spark.examples
 
JComboBoxCellRenderer() - Constructor for class org.ecoinformatics.seek.querybuilder.DBSelectTableUIBase.JComboBoxCellRenderer
 
JFileChooserBugFix - Class in ptolemy.gui
A workaround for a JFileChooser bug.
JFileChooserBugFix() - Constructor for class ptolemy.gui.JFileChooserBugFix
Instantiate a JFileChooserBugFix object.
JiffleProcess - Class in org.kepler.gis.actor.calc
 
JiffleProcess() - Constructor for class org.kepler.gis.actor.calc.JiffleProcess
 
JiffleRasterCalculator - Class in org.kepler.gis.actor.calc
Raster calculator using Jiffle.
JiffleRasterCalculator(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.calc.JiffleRasterCalculator
 
jj_nt - Variable in class ptolemy.data.expr.MatrixParser
Next token.
jj_nt - Variable in class ptolemy.data.expr.PtParser
Next token.
jj_nt - Variable in class ptolemy.moml.unit.UParser
Next token.
jjFillToken() - Method in class ptolemy.data.expr.MatrixParserTokenManager
 
jjFillToken() - Method in class ptolemy.data.expr.PtParserTokenManager
 
jjFillToken() - Method in class ptolemy.moml.unit.UParserTokenManager
 
jjnewLexState - Static variable in class ptolemy.data.expr.PtParserTokenManager
Lex State array.
jjstrLiteralImages - Static variable in class ptolemy.data.expr.MatrixParserTokenManager
Token literal values.
jjstrLiteralImages - Static variable in class ptolemy.data.expr.PtParserTokenManager
Token literal values.
jjstrLiteralImages - Static variable in class ptolemy.moml.unit.UParserTokenManager
Token literal values.
jjtAddChild(Node, int) - Method in class ptolemy.data.expr.ASTPtRootNode
 
jjtAddChild(Node, int) - Method in interface ptolemy.data.expr.Node
This method tells the node to add its argument to the node's list of children.
jjtAddChild(Node, int) - Method in class ptolemy.data.expr.SimpleNode
 
jjtClose() - Method in class ptolemy.data.expr.ASTPtAssignmentNode
 
jjtClose() - Method in class ptolemy.data.expr.ASTPtFunctionApplicationNode
 
jjtClose() - Method in class ptolemy.data.expr.ASTPtFunctionDefinitionNode
Close this node.
jjtClose() - Method in class ptolemy.data.expr.ASTPtMethodCallNode
 
jjtClose() - Method in class ptolemy.data.expr.ASTPtProductNode
Close this node.
jjtClose() - Method in class ptolemy.data.expr.ASTPtRootNode
 
jjtClose() - Method in class ptolemy.data.expr.ASTPtSumNode
Close this node.
jjtClose() - Method in interface ptolemy.data.expr.Node
This method is called after all the child nodes have been added.
jjtClose() - Method in class ptolemy.data.expr.SimpleNode
 
JJTELEMENT - Static variable in interface ptolemy.data.expr.MatrixParserTreeConstants
 
jjtGetChild(int) - Method in class ptolemy.data.expr.ASTPtRootNode
 
jjtGetChild(int) - Method in interface ptolemy.data.expr.Node
This method returns a child node.
jjtGetChild(int) - Method in class ptolemy.data.expr.SimpleNode
 
jjtGetNumChildren() - Method in class ptolemy.data.expr.ASTPtRootNode
 
jjtGetNumChildren() - Method in interface ptolemy.data.expr.Node
Return the number of children the node has.
jjtGetNumChildren() - Method in class ptolemy.data.expr.SimpleNode
 
jjtGetParent() - Method in class ptolemy.data.expr.ASTPtRootNode
 
jjtGetParent() - Method in interface ptolemy.data.expr.Node
 
jjtGetParent() - Method in class ptolemy.data.expr.SimpleNode
 
jjtGetValue() - Method in class ptolemy.data.expr.SimpleNode
 
JJTMATRIX - Static variable in interface ptolemy.data.expr.MatrixParserTreeConstants
 
JJTMatrixParserState - Class in ptolemy.data.expr
 
JJTMatrixParserState() - Constructor for class ptolemy.data.expr.JJTMatrixParserState
 
jjtNodeName - Static variable in interface ptolemy.data.expr.MatrixParserTreeConstants
 
jjtNodeName - Static variable in interface ptolemy.data.expr.PtParserTreeConstants
 
jjtOpen() - Method in class ptolemy.data.expr.ASTPtRootNode
 
jjtOpen() - Method in interface ptolemy.data.expr.Node
This method is called after the node has been made the current node.
jjtOpen() - Method in class ptolemy.data.expr.SimpleNode
 
JJTPTARRAYCONSTRUCTNODE - Static variable in interface ptolemy.data.expr.PtParserTreeConstants
 
JJTPTASSIGNMENTNODE - Static variable in interface ptolemy.data.expr.PtParserTreeConstants
 
JJTPTBITWISENODE - Static variable in interface ptolemy.data.expr.PtParserTreeConstants
 
JJTPTFUNCTIONALIFNODE - Static variable in interface ptolemy.data.expr.PtParserTreeConstants
 
JJTPTFUNCTIONAPPLICATIONNODE - Static variable in interface ptolemy.data.expr.PtParserTreeConstants
 
JJTPTFUNCTIONDEFINITIONNODE - Static variable in interface ptolemy.data.expr.PtParserTreeConstants
 
JJTPTLEAFNODE - Static variable in interface ptolemy.data.expr.PtParserTreeConstants
 
JJTPTLOGICALNODE - Static variable in interface ptolemy.data.expr.PtParserTreeConstants
 
JJTPTMATRIXCONSTRUCTNODE - Static variable in interface ptolemy.data.expr.PtParserTreeConstants
 
JJTPTMETHODCALLNODE - Static variable in interface ptolemy.data.expr.PtParserTreeConstants
 
JJTPTORDEREDRECORDCONSTRUCTNODE - Static variable in interface ptolemy.data.expr.PtParserTreeConstants
 
JJTPtParserState - Class in ptolemy.data.expr
 
JJTPtParserState() - Constructor for class ptolemy.data.expr.JJTPtParserState
 
JJTPTPOWERNODE - Static variable in interface ptolemy.data.expr.PtParserTreeConstants
 
JJTPTPRODUCTNODE - Static variable in interface ptolemy.data.expr.PtParserTreeConstants
 
JJTPTRECORDCONSTRUCTNODE - Static variable in interface ptolemy.data.expr.PtParserTreeConstants
 
JJTPTRELATIONALNODE - Static variable in interface ptolemy.data.expr.PtParserTreeConstants
 
JJTPTROOTNODE - Static variable in interface ptolemy.data.expr.PtParserTreeConstants
 
JJTPTSHIFTNODE - Static variable in interface ptolemy.data.expr.PtParserTreeConstants
 
JJTPTSUMNODE - Static variable in interface ptolemy.data.expr.PtParserTreeConstants
 
JJTPTUNARYNODE - Static variable in interface ptolemy.data.expr.PtParserTreeConstants
 
JJTPTUNIONCONSTRUCTNODE - Static variable in interface ptolemy.data.expr.PtParserTreeConstants
 
jjtree - Variable in class ptolemy.data.expr.MatrixParser
 
jjtree - Variable in class ptolemy.data.expr.PtParser
 
JJTROW - Static variable in interface ptolemy.data.expr.MatrixParserTreeConstants
 
jjtSetParent(Node) - Method in class ptolemy.data.expr.ASTPtRootNode
 
jjtSetParent(Node) - Method in interface ptolemy.data.expr.Node
This pair of methods are used to inform the node of its parent.
jjtSetParent(Node) - Method in class ptolemy.data.expr.SimpleNode
 
jjtSetValue(Object) - Method in class ptolemy.data.expr.SimpleNode
 
JJTVOID - Static variable in interface ptolemy.data.expr.PtParserTreeConstants
 
jLabelDims - Static variable in class org.kepler.gui.TabbedDialog
Dimensions of the JLabels to left of text input fields:
JLabelDragSource - Class in org.kepler.reporting.gui
 
JLabelDragSource(JLabel) - Constructor for class org.kepler.reporting.gui.JLabelDragSource
 
jlabelFlavor - Static variable in class org.kepler.reporting.gui.ReportDesignerPanel
 
JLabelTransferable - Class in org.kepler.reporting.gui
 
JLabelTransferable(JLabel) - Constructor for class org.kepler.reporting.gui.JLabelTransferable
 
JListComponentBuilder - Class in org.mlc.swing.layout
This is the ComponentBuilder used to build JLists.
JListComponentBuilder() - Constructor for class org.mlc.swing.layout.JListComponentBuilder
 
jmgr - Variable in class org.kepler.actor.job.JobManager
The created org.kepler.job.JobManager object as ObjectToken.
JNLPUtilities - Class in ptolemy.actor.gui
This class contains utilities for use with JNLP, aka Web Start.
job - Variable in class org.kepler.actor.job.JobCreator
The job object.
job - Variable in class org.kepler.actor.job.JobGetDirectory
A submitted job This port is an output port of type Object.
job - Variable in class org.kepler.actor.job.JobGetRealJobID
A submitted job This port is an output port of type Object.
job - Variable in class org.kepler.actor.job.JobRemover
A submitted job This port is an output port of type Object.
Job - Class in org.kepler.job
Class Job to describe a standalone job.
Job(String) - Constructor for class org.kepler.job.Job
Constructor is called from JobFactory. jobID is a unique id for the jobs.
Job.JobFile - Class in org.kepler.job
 
Job.JobFiles - Class in org.kepler.job
 
job_tokenProdRate - Variable in class org.kepler.actor.job.JobStatus
 
jobArguments - Variable in class org.kepler.ddp.director.DDPDirector
A comma-separated list of arguments for the job.
JobCreator - Class in org.kepler.actor.job
Create a job.
JobCreator(CompositeEntity, String) - Constructor for class org.kepler.actor.job.JobCreator
Construct an actor with the given container and name.
JobException - Exception in org.kepler.job
Exception for the job class failures thrown in Job.java
JobException(String) - Constructor for exception org.kepler.job.JobException
 
JobFactory - Class in org.kepler.job
This class provides a factory to store Job objects.
JobFileFetcher - Class in org.kepler.actor.job
Get the job file info of a submitted Job This actor uses the Job class to ask for the the job file info (file path + file name) of a submitted job.
JobFileFetcher(CompositeEntity, String) - Constructor for class org.kepler.actor.job.JobFileFetcher
Construct an actor with the given container and name.
jobFileName - Variable in class org.kepler.actor.job.JobFileFetcher
 
jobfiles - Variable in class org.kepler.job.Job
 
JobFiles() - Constructor for class org.kepler.job.Job.JobFiles
 
JobGetDirectory - Class in org.kepler.actor.job
Get the working directory of a submitted Job This actor uses the Job class to get the working directory of a submitted job.
JobGetDirectory(CompositeEntity, String) - Constructor for class org.kepler.actor.job.JobGetDirectory
Construct an actor with the given container and name.
JobGetRealJobID - Class in org.kepler.actor.job
Get the real (given back the jobManager as a handle) JobID of a submitted Job This actor uses the Job class get the jobID of a submitted job.
JobGetRealJobID(CompositeEntity, String) - Constructor for class org.kepler.actor.job.JobGetRealJobID
Construct an actor with the given container and name.
jobID - Variable in class org.kepler.actor.job.GenericJobLauncher
The real job ID generated from the job scheduler.
jobID - Variable in class org.kepler.actor.job.JobGetRealJobID
Real jobID of the job that came from the job manager as a handle when the job was submitted.
jobID - Variable in class org.kepler.job.JobStatusInfo
 
jobIn - Variable in class org.kepler.actor.job.JobFileFetcher
A submitted job This port is an output port of type Object.
jobIn - Variable in class org.kepler.actor.job.JobStatus
A submitted job This port is an output port of type Object.
jobIn - Variable in class org.kepler.actor.job.JobSubmitter
The job to be submitted Such a job can be created by the JobCreator.
JobManager - Class in org.kepler.actor.job
Define a jobmanager on the local/remote machine This actor uses the org.kepler.job.JobManagerFactory and org.kepler.job JobManager classes to define a job manager The input should be: the supporter class' name, e.g.
JobManager(CompositeEntity, String) - Constructor for class org.kepler.actor.job.JobManager
Construct an actor with the given container and name.
jobManager - Variable in class org.kepler.actor.job.JobManager
The name of the jobmanager to be used It should be a name, for which a supporter class exist as org.kepler.job.JobSupport.class This parameter is read each time in fire().
jobManager - Variable in class org.kepler.actor.job.JobSubmitter
The selected jobmanager (result of JobManager) This port is an input port of type Object;
JobManager - Class in org.kepler.job
 
JobManager() - Constructor for class org.kepler.job.JobManager
 
JobManagerFactory - Class in org.kepler.job
JobManagerFactory singleton class to create JobManager objects.
jobOut - Variable in class org.kepler.actor.job.GenericJobLauncher
The job is passed on in this actor.
jobOut - Variable in class org.kepler.actor.job.GenericJobReconnect
The job is passed on in this actor.
jobOut - Variable in class org.kepler.actor.job.JobStatus
The job is passed on in this actor.
jobOut - Variable in class org.kepler.actor.job.JobSubmitter
The job, which is passed on in this actor for later use (status, destroy, etc) This port is an output port of type Object.
JobRemover - Class in org.kepler.actor.job
Delete Job from queue whether it is running or waiting in queue.
JobRemover(CompositeEntity, String) - Constructor for class org.kepler.actor.job.JobRemover
Construct an actor with the given container and name.
JobStatus - Class in org.kepler.actor.job
Check the status of a Job This actor uses the Job class to ask for the status of a submitted job.
JobStatus(CompositeEntity, String) - Constructor for class org.kepler.actor.job.JobStatus
Construct an actor with the given container and name.
JobStatusCode - Enum in org.kepler.job
Status Code class for Job Status It is a safe implementation of enum type enum { Error, NotInQueue, Wait, Running } Author: Norbert Podhorszki, April 2006
JobStatusInfo - Class in org.kepler.job
Status info struct for the job class
JobStatusInfo() - Constructor for class org.kepler.job.JobStatusInfo
 
jobSubmitOptions - Variable in class org.kepler.actor.job.GenericJobLauncher
The Options of the job submission.
jobSubmitOptions - Variable in class org.kepler.actor.job.JobSubmitter
The Options of the job submission.
JobSubmitter - Class in org.kepler.actor.job
Submit a job into a jobmanager on the local/remote machine, using external execute command/ssh This actor uses the Job and JobManager classes that use
- either java.lang.Runtime.exec() to invoke a subprocess - or org.kepler.ssh classes to use ssh/scp to submit a job and ask for the status of a submitted job.
JobSubmitter(CompositeEntity, String) - Constructor for class org.kepler.actor.job.JobSubmitter
Construct an actor with the given container and name.
JobSupportCondor - Class in org.kepler.job
Support class for Condor job manager support.
JobSupportCondor() - Constructor for class org.kepler.job.JobSupportCondor
 
JobSupportFork - Class in org.kepler.job
Support class for the fork job manager support.
JobSupportFork() - Constructor for class org.kepler.job.JobSupportFork
 
JobSupportLoadLeveler - Class in org.kepler.job
Support class for IBM's LoadLeveler job manager support Class JobManager uses the methods of a supporter class to submit jobs and check status
JobSupportLoadLeveler() - Constructor for class org.kepler.job.JobSupportLoadLeveler
 
JobSupportLSF - Class in org.kepler.job
Support class for Load Sharing Facility (or simply LSF) job manager support Class Job uses the methods of a supporter class to submit jobs and check status
JobSupportLSF() - Constructor for class org.kepler.job.JobSupportLSF
 
JobSupportMoab - Class in org.kepler.job
Support class for MOAB job manager support used on Chinook.
JobSupportMoab() - Constructor for class org.kepler.job.JobSupportMoab
 
JobSupportNCCS - Class in org.kepler.job
Support class for NCCS job manager support Class Job uses the methods of a supporter class to submit jobs and check status
JobSupportNCCS() - Constructor for class org.kepler.job.JobSupportNCCS
 
JobSupportPBS - Class in org.kepler.job
Support class for PBS job manager support Class Job uses the methods of a supporter class to submit jobs and check status
JobSupportPBS() - Constructor for class org.kepler.job.JobSupportPBS
 
JobSupportSGE - Class in org.kepler.job
Support class for Sun Grid Engine job manager support Class Job uses the methods of a supporter class to submit jobs and check status
JobSupportSGE() - Constructor for class org.kepler.job.JobSupportSGE
 
JobSupportSLURM - Class in org.kepler.job
Support class for SLURM job manager support Class Job uses the methods of a supporter class to submit jobs and check status
JobSupportSLURM() - Constructor for class org.kepler.job.JobSupportSLURM
 
join(String) - Method in class org.json.JSONArray
Make a string from the contents of this JSONArray.
join(Object[], String) - Static method in class org.kepler.sms.Util
 
join(List, String) - Static method in class org.kepler.sms.Util
 
join(Record, Record, Collector<Record>) - Method in class org.kepler.stratosphere.stub.KeplerMatchStub
Transfer the data from Stratosphere to Kepler, execute the workflow, and then transfer the data from Kepler to Stratosphere.
join(MatrixToken[][]) - Method in class ptolemy.data.BooleanMatrixToken
Join a matrix of matrices into a single matrix by tiling.
join(MatrixToken[][]) - Method in class ptolemy.data.ComplexMatrixToken
Join a matrix of matrices into a single matrix by tiling.
join(MatrixToken[][]) - Method in class ptolemy.data.DoubleMatrixToken
Join a matrix of matrices into a single matrix by tiling.
join(MatrixToken[][]) - Method in class ptolemy.data.FixMatrixToken
Join a matrix of matrices into a single matrix by tiling.
join(MatrixToken[][]) - Method in class ptolemy.data.IntMatrixToken
Join a matrix of matrices into a single matrix by tiling.
join(MatrixToken[][]) - Method in class ptolemy.data.LongMatrixToken
Join a matrix of matrices into a single matrix by tiling.
join(MatrixToken[][]) - Method in class ptolemy.data.MatrixToken
Join a matrix of matrices into a single matrix by tiling.
JOINCONDITIONCONSTRAINT - Static variable in interface org.kepler.objectmanager.data.db.Constraint
 
JoinConditionConstraint - Class in org.kepler.objectmanager.data.db
This class represents a join condtion (join two tables without primary/foreign key) in table level
JoinConditionConstraint() - Constructor for class org.kepler.objectmanager.data.db.JoinConditionConstraint
Default constructor
JoinFunction() - Constructor for class org.kepler.spark.examples.JavaWordCount.JoinFunction
 
JoinOperator - Class in org.kepler.spark.operator
An operator for match/join.
JoinOperator(PairFlatMapFunction<Iterator<Tuple2<?, Tuple2<?, ?>>>, ?, ?>, String) - Constructor for class org.kepler.spark.operator.JoinOperator
Create a new JoinOperator.
jpanelRIO(ReportInstance) - Static method in class org.kepler.reporting.rio.RIORenderer
Deprecated.
 
jQueryLibraries - Variable in class ptolemy.vergil.basic.export.web.IconScript
jQuery libraries to be included in the HEAD section of the html file The path to the libraries will be copied in the same order as given.
JRuby - Class in org.kepler.scriptengine
An actor whose execution is defined by a JRuby script.
JRuby(Workspace) - Constructor for class org.kepler.scriptengine.JRuby
Construct a new JRuby for a specified workspace.
JRuby(CompositeEntity, String) - Constructor for class org.kepler.scriptengine.JRuby
Construct a new JRuby with the given container and name.
JRunCIPRes - Class in org.cipres.kepler
This actor calls the external applications.
JRunCIPRes(CompositeEntity, String) - Constructor for class org.cipres.kepler.JRunCIPRes
Construct JRunCIPRes source with the given container and name.
jschSession - Variable in class org.kepler.ssh.SshExec
 
jschSession - Variable in class org.sdm.spa.actors.transport.ScpCopier
 
JSONArray - Class in org.json
A JSONArray is an ordered sequence of values.
JSONArray() - Constructor for class org.json.JSONArray
Construct an empty JSONArray.
JSONArray(JSONTokener) - Constructor for class org.json.JSONArray
Construct a JSONArray from a JSONTokener.
JSONArray(String) - Constructor for class org.json.JSONArray
Construct a JSONArray from a source JSON text.
JSONArray(Collection) - Constructor for class org.json.JSONArray
Construct a JSONArray from a Collection.
JSONArray(Object) - Constructor for class org.json.JSONArray
Construct a JSONArray from an array
JSONException - Exception in org.json
The JSONException is thrown by the JSON.org classes when things are amiss.
JSONException(String) - Constructor for exception org.json.JSONException
Constructs a JSONException with an explanatory message.
JSONException(Throwable) - Constructor for exception org.json.JSONException
 
JSONML - Class in org.json
This provides static methods to convert an XML text into a JSONArray or JSONObject, and to covert a JSONArray or JSONObject into an XML text using the JsonML transform.
JSONML() - Constructor for class org.json.JSONML
 
JSONObject - Class in org.json
A JSONObject is an unordered collection of name/value pairs.
JSONObject() - Constructor for class org.json.JSONObject
Construct an empty JSONObject.
JSONObject(JSONObject, String[]) - Constructor for class org.json.JSONObject
Construct a JSONObject from a subset of another JSONObject.
JSONObject(JSONTokener) - Constructor for class org.json.JSONObject
Construct a JSONObject from a JSONTokener.
JSONObject(Map) - Constructor for class org.json.JSONObject
Construct a JSONObject from a Map.
JSONObject(Object) - Constructor for class org.json.JSONObject
Construct a JSONObject from an Object using bean getters.
JSONObject(Object, String[]) - Constructor for class org.json.JSONObject
Construct a JSONObject from an Object, using reflection to find the public members.
JSONObject(String) - Constructor for class org.json.JSONObject
Construct a JSONObject from a source JSON text string.
JSONString - Interface in org.json
The JSONString interface allows a toJSONString() method so that a class can change the behavior of JSONObject.toString(), JSONArray.toString(), and JSONWriter.value(Object).
JSONStringer - Class in org.json
JSONStringer provides a quick and convenient way of producing JSON text.
JSONStringer() - Constructor for class org.json.JSONStringer
Make a fresh JSONStringer.
JSONTokener - Class in org.json
A JSONTokener takes a source string and extracts characters and tokens from it.
JSONTokener(Reader) - Constructor for class org.json.JSONTokener
Construct a JSONTokener from a reader.
JSONTokener(String) - Constructor for class org.json.JSONTokener
Construct a JSONTokener from a string.
JSONToToken - Class in ptolemy.actor.lib.conversions.json
An actor that converts a string containing JSON-formatted data into a Token.
JSONToToken(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.conversions.json.JSONToToken
Construct a JSONToToken actor with the given container and name.
JSONWriter - Class in org.json
JSONWriter provides a quick and convenient way of producing JSON text.
JSONWriter(Writer) - Constructor for class org.json.JSONWriter
Make a fresh JSONWriter.
JSPlotterAttribute - Class in ptolemy.vergil.basic.export.web
Base class for attributes generating the HTML file with JavaScript to plot simulation results for "Export to Web".
JSPlotterAttribute(NamedObj, String) - Constructor for class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Create an instance for each parameter.
JTableComponentBuilder - Class in org.mlc.swing.layout
This is the ComponentBuilder used to build JTables.
JTableComponentBuilder() - Constructor for class org.mlc.swing.layout.JTableComponentBuilder
 
JTextAreaExec - Class in ptolemy.gui
Execute commands in a subprocess and display them in a JTextArea.
JTextAreaExec(String, boolean) - Constructor for class ptolemy.gui.JTextAreaExec
Create the JTextArea, progress bar, status text field and optionally Start, Cancel and Clear buttons.
JToolBarComponentBuilder - Class in org.mlc.swing.layout
This is the ComponentBuilder that is used to build JToolBars.
JToolBarComponentBuilder() - Constructor for class org.mlc.swing.layout.JToolBarComponentBuilder
Creates a new instance of SeparatorComponentBuilder
JTreeComponentBuilder - Class in org.mlc.swing.layout
This is the ComponentBuilder used to build JTrees!
JTreeComponentBuilder() - Constructor for class org.mlc.swing.layout.JTreeComponentBuilder
Creates a new instance of SeparatorComponentBuilder
JumpFrame - Class in org.kepler.gis.display
Name: JumpFrame.java Purpose:Given a GML string or an ESRI shapefile name, it obtains the geometric data and send them to a JUMP MapTab for display.
JumpFrame(String) - Constructor for class org.kepler.gis.display.JumpFrame
Constructor for the JumpFrame object
JumpGMLDisplayer - Class in org.kepler.gis.display
Name: JumpGMLDisplayer.java Purpose:The actor serves as a proxy to invoke a frame window to display GML data (String).
JumpGMLDisplayer(CompositeEntity, String) - Constructor for class org.kepler.gis.display.JumpGMLDisplayer
Constructor for the JumpGMLDisplayer object
JumpMapTab - Class in org.kepler.gis.display
Name: JumpMapTab.java Purpose:A customized GUI simailar to JUMP workbench for displaying vector GIS data.
JumpMapTab(ErrorHandler) - Constructor for class org.kepler.gis.display.JumpMapTab
Constructor for the JumpMapTab object
JumpSHPDisplayer - Class in org.kepler.gis.display
Name: JumpSHPDisplayer.java Purpose:The actor serves as a proxy to invoke a frame window to display ESRI shape file.
JumpSHPDisplayer(CompositeEntity, String) - Constructor for class org.kepler.gis.display.JumpSHPDisplayer
Constructor for the JumpSHPDisplayer object
JUnitAuto32Base - Class in ptolemy.util.test.junit
Run the 32-bit Java tests in auto/.
JUnitAuto32Base() - Constructor for class ptolemy.util.test.junit.JUnitAuto32Base
 
JUnitAuto32Test - Class in ptolemy.demo.test.junit
Run the 32-bit Java tests in auto/.
JUnitAuto32Test() - Constructor for class ptolemy.demo.test.junit.JUnitAuto32Test
 
JUnitCGAccessorTestBase - Class in ptolemy.util.test.junit
Run the auto/ tests using Accessor cg target.
JUnitCGAccessorTestBase() - Constructor for class ptolemy.util.test.junit.JUnitCGAccessorTestBase
 
JUnitCGCArduinoTestBase - Class in ptolemy.util.test.junit
Run the auto/ tests using c cg.
JUnitCGCArduinoTestBase() - Constructor for class ptolemy.util.test.junit.JUnitCGCArduinoTestBase
 
JUnitCGCDuktapeTestBase - Class in ptolemy.util.test.junit
Run the auto/ tests using c cg for the Duktape JavaScript target.
JUnitCGCDuktapeTestBase() - Constructor for class ptolemy.util.test.junit.JUnitCGCDuktapeTestBase
 
JUnitCGCNoInlineTestBase - Class in ptolemy.util.test.junit
Run the auto/ tests using c cg with no inlining.
JUnitCGCNoInlineTestBase() - Constructor for class ptolemy.util.test.junit.JUnitCGCNoInlineTestBase
 
JUnitCGCTestBase - Class in ptolemy.util.test.junit
Run the auto/ tests using c cg.
JUnitCGCTestBase() - Constructor for class ptolemy.util.test.junit.JUnitCGCTestBase
 
JUnitCGFMIMATestBase - Class in ptolemy.util.test.junit
Run the auto/ tests using the Functional Mock-up Interface Master Algorithm (FMIMA) cg.
JUnitCGFMIMATestBase() - Constructor for class ptolemy.util.test.junit.JUnitCGFMIMATestBase
 
JUnitCGJavaTestBase - Class in ptolemy.util.test.junit
Run the auto/ tests using java cg.
JUnitCGJavaTestBase() - Constructor for class ptolemy.util.test.junit.JUnitCGJavaTestBase
 
JUnitTclTest - Class in ptolemy.actor.gui.style.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.actor.gui.style.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.actor.gui.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.actor.gui.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.actor.lib.colt.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.actor.lib.colt.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.actor.lib.comm.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.actor.lib.comm.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.actor.lib.conversions.json.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.actor.lib.conversions.json.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.actor.lib.conversions.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.actor.lib.conversions.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.actor.lib.gui.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.actor.lib.gui.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.actor.lib.hoc.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.actor.lib.hoc.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.actor.lib.image.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.actor.lib.image.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.actor.lib.io.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.actor.lib.io.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.actor.lib.logic.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.actor.lib.logic.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.actor.lib.python.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.actor.lib.python.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.actor.lib.r.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.actor.lib.r.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.actor.lib.string.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.actor.lib.string.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.actor.lib.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.actor.lib.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.actor.lib.xslt.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.actor.lib.xslt.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.actor.parameters.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.actor.parameters.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.actor.process.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.actor.process.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.actor.sched.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.actor.sched.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.actor.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.actor.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.actor.util.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.actor.util.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.configs.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.configs.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.data.expr.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.data.expr.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.data.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.data.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.data.type.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.data.type.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.data.unit.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.data.unit.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.demo.PLC.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.demo.PLC.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.demo.Quarry.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.demo.Quarry.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.demo.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.demo.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.domains.continuous.lib.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.domains.continuous.lib.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.domains.continuous.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.domains.continuous.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.domains.ddf.kernel.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.domains.ddf.kernel.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.domains.ddf.lib.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.domains.ddf.lib.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.domains.ddf.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.domains.ddf.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.domains.de.kernel.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.domains.de.kernel.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.domains.de.lib.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.domains.de.lib.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.domains.de.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.domains.de.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.domains.modal.kernel.ia.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.domains.modal.kernel.ia.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.domains.modal.kernel.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.domains.modal.kernel.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.domains.modal.modal.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.domains.modal.modal.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.domains.modal.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.domains.modal.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.domains.pn.kernel.event.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.domains.pn.kernel.event.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.domains.pn.kernel.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.domains.pn.kernel.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.domains.pn.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.domains.pn.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.domains.sdf.kernel.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.domains.sdf.kernel.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.domains.sdf.lib.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.domains.sdf.lib.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.domains.sdf.lib.vq.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.domains.sdf.lib.vq.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.domains.sdf.optimize.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.domains.sdf.optimize.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.domains.sdf.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.domains.sdf.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.domains.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.domains.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.graph.analysis.analyzer.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.graph.analysis.analyzer.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.graph.analysis.strategy.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.graph.analysis.strategy.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.graph.analysis.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.graph.analysis.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.graph.mapping.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.graph.mapping.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.graph.sched.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.graph.sched.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.graph.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.graph.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.gui.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.gui.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.kernel.attributes.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.kernel.attributes.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.kernel.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.kernel.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.kernel.undo.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.kernel.undo.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.kernel.util.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.kernel.util.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.kernel.util.test.system.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.kernel.util.test.system.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.math.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.math.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.media.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.media.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.moml.filter.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.moml.filter.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.moml.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.moml.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.moml.unit.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.moml.unit.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.plot.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.plot.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.util.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.util.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.util.test.travis.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.util.test.travis.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.vergil.actor.lib.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.vergil.actor.lib.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.vergil.basic.export.html.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.vergil.basic.export.html.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.vergil.basic.export.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.vergil.basic.export.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.vergil.basic.layout.kieler.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.vergil.basic.layout.kieler.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.vergil.basic.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.vergil.basic.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.vergil.icon.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.vergil.icon.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.vergil.kernel.attributes.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.vergil.kernel.attributes.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.vergil.modal.modal.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.vergil.modal.modal.test.junit.JUnitTclTest
 
JUnitTclTest - Class in ptolemy.vergil.test.junit
Run the auto/ and Tcl tests under JUnit.
JUnitTclTest() - Constructor for class ptolemy.vergil.test.junit.JUnitTclTest
 
JUnitTclTestBase - Class in ptolemy.util.test.junit
Run the Tcl tests under JUnit.
JUnitTclTestBase() - Constructor for class ptolemy.util.test.junit.JUnitTclTestBase
 
JUnitTclTestRun - Class in ptolemy.util.test.junit
Run the Tcl tests under JUnit.
JUnitTclTestRun() - Constructor for class ptolemy.util.test.junit.JUnitTclTestRun
 
justDateNoTime - Variable in class org.kepler.workflowrunmanager.StartTimeQueryParse
 
JVMBitWidth - Class in ptolemy.util
Determine the bit width (32 or 64) of the JVM.
JVMBitWidth() - Constructor for class ptolemy.util.JVMBitWidth
 
JVMFrame(CompositeEntity, Tableau) - Constructor for class ptolemy.actor.gui.JVMTableau.JVMFrame
Construct a frame to display JVM properties.
JvmMemoryDialogAction - Class in org.kepler.gui.memory
Created by David Welker.
JvmMemoryDialogAction(TableauFrame) - Constructor for class org.kepler.gui.memory.JvmMemoryDialogAction
 
JvmMemoryPanel - Class in org.kepler.gui.memory
Created by David Welker.
JvmMemoryPanel(JDialog) - Constructor for class org.kepler.gui.memory.JvmMemoryPanel
 
JVMTableau - Class in ptolemy.actor.gui
A tableau that displays Java Virtual Machine information such as the version number and other properties.
JVMTableau(PtolemyEffigy, String) - Constructor for class ptolemy.actor.gui.JVMTableau
Create a new control panel displaying the JVM properties The tableau is itself an entity contained by the effigy and having the specified name.
JVMTableau.Factory - Class in ptolemy.actor.gui
A factory that creates a control panel to display JVM Properties.
JVMTableau.JVMFrame - Class in ptolemy.actor.gui
The frame that is created by an instance of JVMTableau.
Jython - Class in org.kepler.scriptengine
An actor whose execution is controlled by a Jython script.
Jython(Workspace) - Constructor for class org.kepler.scriptengine.Jython
Construct a new Jython for a specified workspace.
Jython(CompositeEntity, String) - Constructor for class org.kepler.scriptengine.Jython
Construct a new Jython with the given container and name.
jythonClassName - Variable in class ptolemy.actor.lib.python.PythonScript
The Jython class name to be invoked.

K

KAR_COMPLIANCE_DEFAULT - Static variable in class org.kepler.kar.KARFile
"relaxed" if you change this you should also change KARFILE_CONFIG_PROP_MODULE's configuration.xml we need to keep both for users that started with an earlier version of configuration.xml that lacks the KAR_COMPLIANCE_PROPERTY
KAR_COMPLIANCE_PROPERTY_NAME - Static variable in class org.kepler.kar.KARFile
"KARComplianceMode"
KAR_COMPLIANCE_RELAXED - Static variable in class org.kepler.kar.KARFile
"relaxed"
KAR_COMPLIANCE_STRICT - Static variable in class org.kepler.kar.KARFile
"strict"
KAR_CONTENTS_TABLE_NAME - Static variable in class org.kepler.kar.KARCacheManager
 
KAR_CURRENT_VERSION_DEFAULT - Static variable in class org.kepler.kar.KARFile
 
KAR_CURRENT_VERSION_PROPERTY_NAME - Static variable in class org.kepler.kar.KARFile
"currentVersion" sub-element of karVersions
KAR_ERRORS_TABLE_NAME - Static variable in class org.kepler.kar.KARCacheManager
 
KAR_LOCAL_REPOS_TABLE_NAME - Static variable in class org.kepler.objectmanager.cache.LocalRepositoryManager
 
KAR_LSID_ATTRIBUTE_NAME - Static variable in class org.kepler.kar.KARBuilder
 
KAR_VERSION - Static variable in class org.kepler.kar.KARFile
Name object for KAR-Version manifest attribute.
KAR_VERSION_200_NAMESPACE_DEFAULT - Static variable in class org.kepler.kar.KARFile
 
KAR_VERSION_200_RESOURCE_FILENAME_DEFAULT - Static variable in class org.kepler.kar.KARFile
 
KAR_VERSION_200_RESOURCEDIR_DEFAULT - Static variable in class org.kepler.kar.KARFile
 
KAR_VERSION_200_SCHEMAURL_DEFAULT - Static variable in class org.kepler.kar.KARFile
 
KAR_VERSION_200_VERSION_DEFAULT - Static variable in class org.kepler.kar.KARFile
 
KAR_VERSION_210_NAMESPACE_DEFAULT - Static variable in class org.kepler.kar.KARFile
 
KAR_VERSION_210_RESOURCE_FILENAME_DEFAULT - Static variable in class org.kepler.kar.KARFile
 
KAR_VERSION_210_RESOURCEDIR_DEFAULT - Static variable in class org.kepler.kar.KARFile
 
KAR_VERSION_210_SCHEMAURL_DEFAULT - Static variable in class org.kepler.kar.KARFile
 
KAR_VERSION_210_VERSION_DEFAULT - Static variable in class org.kepler.kar.KARFile
 
KAR_VERSION_NAMESPACE_PROPERTY_NAME - Static variable in class org.kepler.kar.KARFile
"namespace" sub-element of karVersion
KAR_VERSION_PROPERTY_NAME - Static variable in class org.kepler.kar.KARFile
"karVersion" sub-element of karVersions
KAR_VERSION_RESOURCE_FILENAME_PROPERTY_NAME - Static variable in class org.kepler.kar.KARFile
"resourceFileName" sub-element of karVersion
KAR_VERSION_RESOURCEDIR_PROPERTY_NAME - Static variable in class org.kepler.kar.KARFile
"resourceDir" sub-element of karVersion
KAR_VERSION_SCHEMAURL_PROPERTY_NAME - Static variable in class org.kepler.kar.KARFile
"schemaUrl" sub-element of karVersion
KAR_VERSION_VERSION_PROPERTY_NAME - Static variable in class org.kepler.kar.KARFile
"version" sub-element of karVersion
KAR_VERSIONS_PROPERTY_NAME - Static variable in class org.kepler.kar.KARFile
"karVersions"
KARAlreadyCachedException - Exception in org.kepler.kar
exception thrown when a kar file has already been cached.
KARAlreadyCachedException(String) - Constructor for exception org.kepler.kar.KARAlreadyCachedException
 
KARBuilder - Class in org.kepler.kar
 
KARBuilder() - Constructor for class org.kepler.kar.KARBuilder
Empty Constructor for building a KAR file.
KARCacheContent - Class in org.kepler.kar
This class holds the information for one row of the KAR_CACHE_CONTENT table.
KARCacheContent() - Constructor for class org.kepler.kar.KARCacheContent
 
KARCached - Class in org.kepler.kar
This class holds the information for one row of the KARS_CACHED table.
KARCached() - Constructor for class org.kepler.kar.KARCached
 
KARCacheError - Class in org.kepler.kar
This class holds the information for one row of the KARS_CACHED table.
KARCacheError() - Constructor for class org.kepler.kar.KARCacheError
 
KARCacheManager - Class in org.kepler.kar
This is a singleton class to help manage KARs as they are stored in the cache.
KARCacheManager() - Constructor for class org.kepler.kar.KARCacheManager
 
KarCombiner - Class in org.kepler.kar
This class is a helper class for combining many kars together into one kar.
KarCombiner() - Constructor for class org.kepler.kar.KarCombiner
 
KARComponentPopup - Class in org.kepler.gui.popups
Subclass of LibraryPopup that handles Components that are contained within a KAR in the library.
KARComponentPopup(TreePath, Component) - Constructor for class org.kepler.gui.popups.KARComponentPopup
 
KarDoclet - Class in org.kepler.kar
A doclet that creates documentation for KAR files.
KarDoclet() - Constructor for class org.kepler.kar.KarDoclet
 
KARDownloader - Class in org.kepler.objectmanager.repository
Created by IntelliJ IDEA.
KAREffigy - Class in org.kepler.gui.kar
An Effigy for KAR files.
KAREffigy(Workspace) - Constructor for class org.kepler.gui.kar.KAREffigy
 
KAREffigy(CompositeEntity, String) - Constructor for class org.kepler.gui.kar.KAREffigy
 
KAREffigy.Factory - Class in org.kepler.gui.kar
A factory for creating new KAR effigies.
KAREntityLibrary - Class in org.kepler.moml
A convenience class to determine the different types of EntityLibraries in the trees for assigning icons.
KAREntityLibrary() - Constructor for class org.kepler.moml.KAREntityLibrary
 
KAREntityLibrary(Workspace) - Constructor for class org.kepler.moml.KAREntityLibrary
 
KAREntityLibrary(CompositeEntity, String) - Constructor for class org.kepler.moml.KAREntityLibrary
 
karEntries() - Method in class org.kepler.kar.KARFile
Returns only valid KAREntries contained in this KARFile.
KAREntry - Class in org.kepler.kar
Represents one entry that is contained inside of a KAR file.
KAREntry(JarEntry) - Constructor for class org.kepler.kar.KAREntry
create a karentry from a jarentry
KAREntry(String) - Constructor for class org.kepler.kar.KAREntry
create a karentry from a name
KAREntry(ZipEntry) - Constructor for class org.kepler.kar.KAREntry
create a karentry from a zipentry
KARENTRY_PROPERTY - Static variable in class org.kepler.util.WorkflowRunUtil
 
KARENTRY_PROPERTY_AT_VALUE - Static variable in class org.kepler.util.WorkflowRunUtil
 
KARENTRY_PROPERTY_NAME - Static variable in class org.kepler.util.WorkflowRunUtil
 
KARENTRY_PROPERTY_PROPERTY - Static variable in class org.kepler.util.WorkflowRunUtil
 
KARENTRY_PROPERTY_PROPERTY_AT_NAME - Static variable in class org.kepler.util.WorkflowRunUtil
 
KARENTRY_PROPERTY_PROPERTY_PROPERTY - Static variable in class org.kepler.util.WorkflowRunUtil
 
KARENTRY_SUBPROPERTY_NAME - Static variable in class org.kepler.util.WorkflowRunUtil
 
KARENTRY_SUBPROPERTY_VALUE - Static variable in class org.kepler.util.WorkflowRunUtil
 
KARENTRY_TYPE - Static variable in class org.kepler.util.WorkflowRunUtil
 
KARENTRY_WORKFLOWRUN_ANNOTATION - Static variable in class org.kepler.util.WorkflowRunUtil
 
KARENTRY_WORKFLOWRUN_DERIVEDFROM - Static variable in class org.kepler.util.WorkflowRunUtil
 
KARENTRY_WORKFLOWRUN_DURATION - Static variable in class org.kepler.util.WorkflowRunUtil
 
KARENTRY_WORKFLOWRUN_ENTITYID - Static variable in class org.kepler.util.WorkflowRunUtil
 
KARENTRY_WORKFLOWRUN_ERRORMESSAGES - Static variable in class org.kepler.util.WorkflowRunUtil
 
KARENTRY_WORKFLOWRUN_EXECID - Static variable in class org.kepler.util.WorkflowRunUtil
 
KARENTRY_WORKFLOWRUN_EXECLSID - Static variable in class org.kepler.util.WorkflowRunUtil
 
KARENTRY_WORKFLOWRUN_HOSTID - Static variable in class org.kepler.util.WorkflowRunUtil
 
KARENTRY_WORKFLOWRUN_MODULEDEPENDENCIES - Static variable in class org.kepler.util.WorkflowRunUtil
 
KARENTRY_WORKFLOWRUN_STARTTIME - Static variable in class org.kepler.util.WorkflowRunUtil
 
KARENTRY_WORKFLOWRUN_SUBPROPERTY_ERROR - Static variable in class org.kepler.util.WorkflowRunUtil
 
KARENTRY_WORKFLOWRUN_SUBPROPERTY_WORKFLOW_TAG - Static variable in class org.kepler.util.WorkflowRunUtil
 
KARENTRY_WORKFLOWRUN_TAG - Static variable in class org.kepler.util.WorkflowRunUtil
 
KARENTRY_WORKFLOWRUN_TYPE - Static variable in class org.kepler.util.WorkflowRunUtil
 
KARENTRY_WORKFLOWRUN_USER - Static variable in class org.kepler.util.WorkflowRunUtil
 
KARENTRY_WORKFLOWRUN_WORKFLOWLSID - Static variable in class org.kepler.util.WorkflowRunUtil
 
KARENTRY_WORKFLOWRUN_WORKFLOWNAME - Static variable in class org.kepler.util.WorkflowRunUtil
 
KARENTRY_WORKFLOWRUN_WORKFLOWTAGS - Static variable in class org.kepler.util.WorkflowRunUtil
 
KAREntryHandler - Interface in org.kepler.kar
 
KAREntryHandlerFactory - Class in org.kepler.kar
 
KAREntryHandlerFactory(NamedObj, String) - Constructor for class org.kepler.kar.KAREntryHandlerFactory
Constructor
KARErrorEntityLibrary - Class in org.kepler.moml
A convenience class to determine the different types of EntityLibraries in the trees for assigning icons.
KARErrorEntityLibrary() - Constructor for class org.kepler.moml.KARErrorEntityLibrary
 
KARErrorEntityLibrary(Workspace) - Constructor for class org.kepler.moml.KARErrorEntityLibrary
 
KARErrorEntityLibrary(CompositeEntity, String) - Constructor for class org.kepler.moml.KARErrorEntityLibrary
 
KARErrorPopup - Class in org.kepler.gui.popups
Subclass of LibraryPopup that handles the popup menu for KARs inside the library that do not have their module dependencies satisfied by the current module configuration.
KARErrorPopup(TreePath, Component) - Constructor for class org.kepler.gui.popups.KARErrorPopup
 
KARFile - Class in org.kepler.kar
A KAR file is just a jar file that requires a manifest to be present that has "KAR-Version" and "lsid" main attributes.
KARFile(File) - Constructor for class org.kepler.kar.KARFile
Constructor for creating a KARFile from an existing file.
KARFILE_CONFIG_PROP_MODULE - Static variable in class org.kepler.kar.KARFile
"core" Module
KARFILENAME - Static variable in class org.kepler.util.WorkflowRunUtil
 
KARFILESIZE - Static variable in class org.kepler.util.WorkflowRunUtil
 
KARFolderPopup - Class in org.kepler.gui.popups
Subclass of LibraryPopup that handles the popup menu for folders that are inside of KAR files.
KARFolderPopup(TreePath, Component) - Constructor for class org.kepler.gui.popups.KARFolderPopup
 
KARLibraryBuilder - Class in org.kepler.moml
This class is used by ptolemy to initialize the library.
KARLibraryBuilder() - Constructor for class org.kepler.moml.KARLibraryBuilder
constructor.
KARLSID - Static variable in class org.kepler.util.WorkflowRunUtil
 
KARManager - Class in org.kepler.kar
This singleton keeps a mapping of JFrames to KARFiles.
KARManager() - Constructor for class org.kepler.kar.KARManager
 
KARManifest - Class in org.kepler.kar
KAR manifest file.
KARManifest() - Constructor for class org.kepler.kar.KARManifest
Constructor.
KARManifest(InputStream) - Constructor for class org.kepler.kar.KARManifest
Constructor.
KARManifest(Manifest) - Constructor for class org.kepler.kar.KARManifest
Constructor.
KarManifestViewer - Class in org.kepler.gui.kar
 
KarManifestViewer() - Constructor for class org.kepler.gui.kar.KarManifestViewer
 
KarManifestViewer(String) - Constructor for class org.kepler.gui.kar.KarManifestViewer
 
KarpCycleMeanStrategy - Class in ptolemy.graph.analysis.strategy
An analyzer for computing the maximum/minimum cycle mean of a graph.
KarpCycleMeanStrategy(Graph, ToDoubleMapping) - Constructor for class ptolemy.graph.analysis.strategy.KarpCycleMeanStrategy
Construct a maximum cycle mean analyzer for a given graph, using the Karp's algorithm.
KARPopup - Class in org.kepler.gui.popups
Subclass of LibraryPopup that handles the popup menu for KARs inside the library.
KARPopup(TreePath, Component) - Constructor for class org.kepler.gui.popups.KARPopup
 
KARPreferencesTab - Class in org.kepler.gui.kar
 
KARPreferencesTab() - Constructor for class org.kepler.gui.kar.KARPreferencesTab
 
KARPreferencesTab.Factory - Class in org.kepler.gui.kar
A factory that creates the ServicesListModification panel for the PreferencesFrame.
KARS_CACHED_TABLE_NAME - Static variable in class org.kepler.kar.KARCacheManager
Table Names
KarUploaderAction - Class in org.kepler.gui.kar
This action can be used for uploading a single Item KAR to a remote repository.
KarUploaderAction(TableauFrame) - Constructor for class org.kepler.gui.kar.KarUploaderAction
 
KarXml - Class in org.kepler.kar.karxml
Created by IntelliJ IDEA.
karXml - Variable in class org.kepler.moml.RemoteKAREntityLibrary
 
KarXml.KarEntry - Class in org.kepler.kar.karxml
 
KarXmlGenerator - Class in org.kepler.kar.karxml
The KarXmlGenerator class reads in a KARFile and generates an xml string that can be used to upload the KAR file to Metacat.
KarXmlGenerator() - Constructor for class org.kepler.kar.karxml.KarXmlGenerator
Empty Constructor
KarXmlGenerator(KARFile) - Constructor for class org.kepler.kar.karxml.KarXmlGenerator
Constructor that takes a KARFile as a parameter.
Kd - Variable in class ptolemy.domains.de.lib.PID
Derivative gain of the controller.
Kepler - Class in org.kepler
A class to initialize the build system, then start the Kepler GUI or execute workflows from the command line.
Kepler() - Constructor for class org.kepler.Kepler
 
KeplerActorMetadata - Class in org.kepler.moml
A Class to hold the Kepler Actor Metadata for an Actor described in MoML.
KeplerActorMetadata() - Constructor for class org.kepler.moml.KeplerActorMetadata
 
KeplerApp4CoGroup - Class in org.kepler.hadoop.execution
This class will parse CoGroup sub-workflow, execute it according to its input, and return execution output.
KeplerApp4CoGroup(Configuration) - Constructor for class org.kepler.hadoop.execution.KeplerApp4CoGroup
 
KeplerApp4Cross - Class in org.kepler.hadoop.execution
This class will parse cross sub-workflow, execute it according to its input, and return execution output.
KeplerApp4Cross(Configuration) - Constructor for class org.kepler.hadoop.execution.KeplerApp4Cross
 
KeplerApp4Map - Class in org.kepler.hadoop.execution
This class will parse map sub-workflow, execute it according to its input, and return execution output.
KeplerApp4Map(Configuration) - Constructor for class org.kepler.hadoop.execution.KeplerApp4Map
 
KeplerApp4Match - Class in org.kepler.hadoop.execution
This class will parse match sub-workflow, execute it according to its input, and return execution output.
KeplerApp4Match(Configuration) - Constructor for class org.kepler.hadoop.execution.KeplerApp4Match
 
KeplerApp4Reduce - Class in org.kepler.hadoop.execution
This class will parse reduce sub-workflow, execute it according to its input, and return execution output.
KeplerApp4Reduce(Configuration) - Constructor for class org.kepler.hadoop.execution.KeplerApp4Reduce
 
KeplerAppBase - Class in org.kepler.hadoop.execution
A base class for Hadoop stubs that execute Kepler workflows.
KeplerAppBase(Configuration, String, String) - Constructor for class org.kepler.hadoop.execution.KeplerAppBase
Create a new KeplerAppBase.
KeplerBackwardCompatibility - Class in org.kepler.moml.filter
This class loads Kepler-specific MoML filters that provide backwards compatibility.
KeplerClassChanges - Class in org.kepler.moml.filter
This class updates Ptolemy's ClassChanges MoML filter with Kepler-specific classes that have been renamed or deleted.
KeplerCoGroupStub - Class in org.kepler.spark.stub
A Spark stub to run a Kepler workflow in a map after the cogroup operator.
KeplerCoGroupStub() - Constructor for class org.kepler.spark.stub.KeplerCoGroupStub
 
KeplerCoGroupStub - Class in org.kepler.stratosphere.stub
A PACT CoGroup stub that runs a Kepler workflow.
KeplerCoGroupStub() - Constructor for class org.kepler.stratosphere.stub.KeplerCoGroupStub
 
KeplerCombineAndReduceStub - Class in org.kepler.stratosphere.stub
A PACT Reduce stub that runs a Kepler workflow.
KeplerCombineAndReduceStub() - Constructor for class org.kepler.stratosphere.stub.KeplerCombineAndReduceStub
 
KeplerCompositeIOPort - Class in org.kepler.sms
A compoiste port is a virtual port that encapsulates a set of underlying ports (both ptolemy ports and other virtual ports).
KeplerCompositeIOPort(NamedObj, String) - Constructor for class org.kepler.sms.KeplerCompositeIOPort
Constructor
KeplerConfigurationApplication - Class in org.kepler
This class is the startup class for all non-gui applications of kepler.
KeplerConfigurationApplication(String[]) - Constructor for class org.kepler.KeplerConfigurationApplication
constructor.
KeplerContextMenuFactory - Class in org.kepler.gui
A factory that creates popup context menus for Kepler actors, directors, etc.
KeplerContextMenuFactory(GraphController) - Constructor for class org.kepler.gui.KeplerContextMenuFactory
Create a new menu factory that contains no menu item factories.
KeplerContextMenuFactory.Factory - Class in org.kepler.gui
A factory that creates the KeplerContextMenuFactory - used by the config
KeplerCrossStub - Class in org.kepler.spark.stub
A Spark stub to run a Kepler workflow in a map after the cartesian operator.
KeplerCrossStub() - Constructor for class org.kepler.spark.stub.KeplerCrossStub
 
KeplerCrossStub - Class in org.kepler.stratosphere.stub
A PACT Cross stub that runs a Kepler workflow.
KeplerCrossStub() - Constructor for class org.kepler.stratosphere.stub.KeplerCrossStub
 
KeplerDocApplicationSpecializer - Class in org.kepler.gui
Kepler specific specialization of the Ptolemy II Documentation system.
KeplerDocApplicationSpecializer() - Constructor for class org.kepler.gui.KeplerDocApplicationSpecializer
 
KeplerDocumentationAttribute - Class in ptolemy.vergil.basic
A Documentation attribute for actors.
KeplerDocumentationAttribute() - Constructor for class ptolemy.vergil.basic.KeplerDocumentationAttribute
Construct a Kepler documentation attribute.
KeplerDocumentationAttribute(NamedObj, String) - Constructor for class ptolemy.vergil.basic.KeplerDocumentationAttribute
Construct a Kepler documentation attribute.
KeplerDocumentationAttribute(Workspace) - Constructor for class ptolemy.vergil.basic.KeplerDocumentationAttribute
Construct a Kepler documentation attribute.
KeplerDocumentationEditorDialog - Class in org.kepler.gui
A dialog used for setting editing kepler documentation for a component.
KeplerDocumentationEditorDialog(Frame, String, JPanel) - Constructor for class org.kepler.gui.KeplerDocumentationEditorDialog
 
KeplerDropTargetListener - Class in org.kepler.gui
 
KeplerDropTargetListener() - Constructor for class org.kepler.gui.KeplerDropTargetListener
 
KeplerEditorDropTarget - Class in org.kepler.gui
This class is an extension of EditorDropTarget that adds support for Drag and Drop insert and replace.
KeplerEditorDropTarget(JGraph) - Constructor for class org.kepler.gui.KeplerEditorDropTarget
Construct a new graph target to operate on the given JGraph.
KeplerGraphFrame - Class in org.kepler.gui
Kepler-specific overrides for the graph frame.
KeplerGraphFrame(CompositeEntity, Tableau) - Constructor for class org.kepler.gui.KeplerGraphFrame
Constructor.
KeplerGraphFrame(CompositeEntity, Tableau, LibraryAttribute) - Constructor for class org.kepler.gui.KeplerGraphFrame
Constructor
KeplerGraphFrame.Components - Class in org.kepler.gui
A class to give KeplerGraphFrameUpdaters access to GUI components.
KeplerGraphFrame.ScrollBarListener - Class in org.kepler.gui
Listener for scrollbar events.
KeplerGraphFrameUpdater - Interface in org.kepler.gui
An interface for updating components of a KeplerGraphFrame.
KeplerGraphTableau - Class in org.kepler.gui.frame
A graph editor for ptolemy models.
KeplerGraphTableau(Workspace) - Constructor for class org.kepler.gui.frame.KeplerGraphTableau
Create a tableau in the specified workspace.
KeplerGraphTableau(PtolemyEffigy, String) - Constructor for class org.kepler.gui.frame.KeplerGraphTableau
Create a tableau with the specified container and name, with no specified default library.
KeplerGraphTableau(PtolemyEffigy, String, LibraryAttribute) - Constructor for class org.kepler.gui.frame.KeplerGraphTableau
Create a tableau with the specified container, name, and default library.
KeplerGraphTableau.Factory - Class in org.kepler.gui.frame
A factory that creates graph editing tableaux for Ptolemy models.
KeplerIconLoader - Class in org.kepler.gui
 
KeplerIconLoader() - Constructor for class org.kepler.gui.KeplerIconLoader
 
KeplerInitializer - Class in org.kepler.gui
Initialize Kepler.
KeplerInitializer() - Constructor for class org.kepler.gui.KeplerInitializer
Perform any Kepler specific initialization.
KeplerIOPortReference - Class in org.kepler.sms
An IO Port Reference refers to a ptolemy Port within its containing entity.
KeplerIOPortReference() - Constructor for class org.kepler.sms.KeplerIOPortReference
Constructor
KeplerIOPortReference(NamedObj, String) - Constructor for class org.kepler.sms.KeplerIOPortReference
Constructor
KeplerIOPortReference(Workspace) - Constructor for class org.kepler.sms.KeplerIOPortReference
Constructor
KeplerIOPortSemanticLink - Class in org.kepler.sms
FIXME: Documentation ...
KeplerIOPortSemanticLink(NamedObj, String) - Constructor for class org.kepler.sms.KeplerIOPortSemanticLink
Constructor
KeplerLocalLSIDService - Class in org.ecoinformatics.seek.sms
Description of the Class
KeplerLocalLSIDService() - Constructor for class org.ecoinformatics.seek.sms.KeplerLocalLSIDService
Constructor for the KeplerLocalLSIDService object
KeplerLSID - Class in org.kepler.objectmanager.lsid
A kepler class to store lsids of the form urn:lsid:<authority>:<namespace>:<object>:<revision>#<anchor> where <authority> and <namespace> are strings that do not contain : characters and where <object> and <revision> are Long, 64 bit integers, and <anchor> is any string that does not contain a # or : character.
KeplerLSID(String) - Constructor for class org.kepler.objectmanager.lsid.KeplerLSID
Construct an lsid.
KeplerLSID(String, String, Long, Long) - Constructor for class org.kepler.objectmanager.lsid.KeplerLSID
construct an lsid from components
KeplerLSID(String, String) - Constructor for class org.kepler.objectmanager.lsid.KeplerLSID
creates an lsid from a metacat docid of the form .
KeplerMapStub - Class in org.kepler.spark.stub
A Spark Map stub that runs a Kepler workflow.
KeplerMapStub() - Constructor for class org.kepler.spark.stub.KeplerMapStub
 
KeplerMapStub - Class in org.kepler.stratosphere.stub
A PACT Map stub that runs a Kepler workflow.
KeplerMapStub() - Constructor for class org.kepler.stratosphere.stub.KeplerMapStub
 
KeplerMatchStub - Class in org.kepler.spark.stub
A Spark stub to run a Kepler workflow in a map after the join/match operator.
KeplerMatchStub() - Constructor for class org.kepler.spark.stub.KeplerMatchStub
 
KeplerMatchStub - Class in org.kepler.stratosphere.stub
A PACT Match stub that runs a Kepler workflow.
KeplerMatchStub() - Constructor for class org.kepler.stratosphere.stub.KeplerMatchStub
 
KeplerMenuHandler - Class in org.kepler.gui
adds the kepler menus to vergil
KeplerMenuHandler() - Constructor for class org.kepler.gui.KeplerMenuHandler
 
KeplerMetadataExtractor - Class in org.kepler.moml
This class will contain methods for parsing out the Kepler Metadata from a MOML file.
KeplerMetadataExtractor() - Constructor for class org.kepler.moml.KeplerMetadataExtractor
 
KeplerPairFlatMapFunction<T,K,V> - Class in org.kepler.spark.stub
A Spark stub to run a Kepler workflow in a map.
KeplerPairFlatMapFunction(String, String) - Constructor for class org.kepler.spark.stub.KeplerPairFlatMapFunction
 
KeplerPortNameChanges - Class in org.kepler.moml.filter
This class updates Ptolemy's PortNameChanges MoML filter with Kepler-specific actors with port name changes.
KeplerPropertyClassChanges - Class in org.kepler.moml.filter
This class updates Ptolemy's PropertyClassChanges MoML filter with Kepler-specific actors that have property class changes.
KeplerReduceStub - Class in org.kepler.spark.stub
A Spark stub to run a Kepler workflow in a map after the groupByKey operator.
KeplerReduceStub() - Constructor for class org.kepler.spark.stub.KeplerReduceStub
 
KeplerReduceStub - Class in org.kepler.stratosphere.stub
A PACT Reduce stub that runs a Kepler workflow.
KeplerReduceStub() - Constructor for class org.kepler.stratosphere.stub.KeplerReduceStub
 
KeplerRefinementIOPort - Class in org.kepler.sms
A refinement port is a virtual port that denotes a particular nested structure within a port's value.
KeplerRefinementIOPort(NamedObj, String) - Constructor for class org.kepler.sms.KeplerRefinementIOPort
Constructor
KeplerSchematicContextMenuFactory - Class in org.kepler.gui
A factory that creates popup context menus for Kepler actors, directors, etc.
KeplerSchematicContextMenuFactory(GraphController) - Constructor for class org.kepler.gui.KeplerSchematicContextMenuFactory
Create a new context menu factory associated with the specified controller.
KeplerSchematicContextMenuFactory.Factory - Class in org.kepler.gui
A factory that creates the KeplerSchematicContextMenuFactory - used by the config
KeplerVirtualIOPort - Class in org.kepler.sms
A virtual IO port is a basic (property) attribute.
KeplerVirtualIOPort(NamedObj, String) - Constructor for class org.kepler.sms.KeplerVirtualIOPort
Constructor
KeplerVirtualIOPortReference - Class in org.kepler.sms
A KeplerVirtualPortReference refers to a kepler virtual port within its containing entity.
KeplerVirtualIOPortReference() - Constructor for class org.kepler.sms.KeplerVirtualIOPortReference
Constructor
KeplerVirtualIOPortReference(NamedObj, String) - Constructor for class org.kepler.sms.KeplerVirtualIOPortReference
Constructor
KeplerVirtualIOPortReference(Workspace) - Constructor for class org.kepler.sms.KeplerVirtualIOPortReference
Constructor
KeplerXMLIcon - Class in org.kepler.gui
An icon is a visual representation of an entity.
KeplerXMLIcon(Workspace, String) - Constructor for class org.kepler.gui.KeplerXMLIcon
Construct an icon in the specified workspace and name.
KeplerXMLIcon(NamedObj, String) - Constructor for class org.kepler.gui.KeplerXMLIcon
Create a new icon with the given name in the given container.
KernelException - Exception in ptolemy.kernel.util
Base class for Ptolemy exceptions.
KernelException() - Constructor for exception ptolemy.kernel.util.KernelException
Construct an exception with a no specific detail message.
KernelException(Nameable, Nameable, String) - Constructor for exception ptolemy.kernel.util.KernelException
Construct an exception with a detail message that includes the names of the first two arguments plus the third argument string.
KernelException(Nameable, Nameable, Throwable, String) - Constructor for exception ptolemy.kernel.util.KernelException
Construct an exception with a detail message that includes the names of the first two arguments plus the third argument string.
KernelRuntimeException - Exception in ptolemy.kernel.util
Base class for runtime exceptions.
KernelRuntimeException() - Constructor for exception ptolemy.kernel.util.KernelRuntimeException
Construct an exception with no specific detail message.
KernelRuntimeException(String) - Constructor for exception ptolemy.kernel.util.KernelRuntimeException
Construct an exception with only a detail message.
KernelRuntimeException(Throwable, String) - Constructor for exception ptolemy.kernel.util.KernelRuntimeException
Construct an exception with a cause and a detail message.
KernelRuntimeException(Nameable, String) - Constructor for exception ptolemy.kernel.util.KernelRuntimeException
Construct an exception with a detail message that includes the name of the first argument and the value of the second argument string.
KernelRuntimeException(Nameable, Nameable, Throwable, String) - Constructor for exception ptolemy.kernel.util.KernelRuntimeException
Construct an exception with a detail message that includes the names of the first two arguments plus the value of the fourth argument string.
KernelRuntimeException(Collection, Throwable, String) - Constructor for exception ptolemy.kernel.util.KernelRuntimeException
Construct an exception with a detail message that includes the names of a collection of Nameable objects plus the argument string.
key(String) - Method in class org.json.JSONWriter
Append a key.
key - Variable in class org.kepler.ddp.actor.pattern.stub.StubSourceActor
Output port of key to write to workflow.
key2 - Variable in class org.kepler.ddp.actor.pattern.stub.CrossInput
Port to write the key from the second input.
KEY_FIELD - Static variable in class org.kepler.stratosphere.type.TypeUtilities
The index of the key field.
keyPressed(KeyEvent) - Method in class org.kepler.provenance.gui.DisabledGlassPane
 
keyPressed(KeyEvent) - Method in class ptolemy.plot.EditablePlot.UndoListener
Handle Control, Z or Y being pressed with by calling undo() or redo().
keyPressed(KeyEvent) - Method in class ptolemy.vergil.basic.ExtendedGraphFrame.FullScreenAction
React to a key press by removing full-screen mode.
keyReleased(KeyEvent) - Method in class org.kepler.provenance.gui.DisabledGlassPane
 
keyReleased(KeyEvent) - Method in class ptolemy.plot.EditablePlot.UndoListener
Handle Control being released.
keyReleased(KeyEvent) - Method in class ptolemy.vergil.basic.ExtendedGraphFrame.FullScreenAction
React to a key press by removing full-screen mode.
keys() - Method in class org.json.JSONObject
Get an enumeration of the keys of the JSONObject.
keys - Variable in class ptolemy.actor.lib.Dictionary
Upon receiving any token at the triggerKeys port, this actor will produce on this output an array containing all the keys of entries in the dictionary.
keySet() - Method in class ptolemy.util.MultiHashMap
Return a set of all key values represented by this multimap.
keysvalues - Variable in class org.kepler.ddp.actor.pattern.stub.StubSinkActor
An array of records with key-values.
keyTyped(KeyEvent) - Method in class org.kepler.provenance.gui.DisabledGlassPane
 
keyTyped(KeyEvent) - Method in class ptolemy.plot.EditablePlot.UndoListener
Ignored by this class.
keyTyped(KeyEvent) - Method in class ptolemy.vergil.basic.ExtendedGraphFrame.FullScreenAction
React to a key press by removing full-screen mode.
keyValueArrayType - Static variable in class org.kepler.ddp.actor.pattern.Types
The Ptolemy type for top-level ports of DDP pattern actors.
KeyValuePair - Class in org.kepler.hadoop.io
This class record key and value object of a DDP sub-workflow.
KeyValuePair(Object, Object) - Constructor for class org.kepler.hadoop.io.KeyValuePair
 
KeyValuePair() - Constructor for class org.kepler.hadoop.io.KeyValuePair
 
keyValues() - Method in class org.kepler.cloudsharing.util.WorkflowResults
Get the set of key values.
keyValueTypes - Variable in class org.kepler.ddp.actor.pattern.AtomicPatternActor
The key value types of the atomic patter actor.
Ki - Variable in class ptolemy.domains.de.lib.PID
Integral gain of the controller.
KielerGraphUtil - Class in ptolemy.vergil.basic.layout.kieler
Static helper class to work with KIELER graph datas structures.
KielerGraphUtil() - Constructor for class ptolemy.vergil.basic.layout.kieler.KielerGraphUtil
 
KielerJUnitTest - Class in ptolemy.vergil.basic.layout.kieler.test.junit
Test out Kieler by open models, using Kieler to layout the graph and then doing undo and redo.
KielerJUnitTest() - Constructor for class ptolemy.vergil.basic.layout.kieler.test.junit.KielerJUnitTest
 
KielerJUnitTestExtendedModels - Class in ptolemy.vergil.basic.layout.kieler.test.junit
Test out Kieler by open models, using Kieler to layout the graph and then doing undo and redo.
KielerJUnitTestExtendedModels() - Constructor for class ptolemy.vergil.basic.layout.kieler.test.junit.KielerJUnitTestExtendedModels
 
KielerLayout - Class in ptolemy.vergil.basic.layout.kieler
Ptolemy Layouter that uses the KIELER layout algorithm from an external library to layout a given ptolemy model.
KielerLayout(LayoutTarget) - Constructor for class ptolemy.vergil.basic.layout.kieler.KielerLayout
Construct an instance taking a LayoutTarget for specifying some methods for layout handling as given by the standard Ptolemy AbstractGlobalLayout.
KielerLayout(LayoutTarget, CompositeActor) - Constructor for class ptolemy.vergil.basic.layout.kieler.KielerLayout
Construct an instance setting the LayoutTarget as requested by the AbstractGlobalLayout and the containing Ptolemy model.
KielerLayoutAction - Class in ptolemy.vergil.basic.layout.kieler
Trigger the KIELER place and route automatic dataflow layout algorithm from within the Vergil GUI.
KielerLayoutAction() - Constructor for class ptolemy.vergil.basic.layout.kieler.KielerLayoutAction
 
KielerLayoutArcConnector - Class in ptolemy.vergil.modal
Extends the regular ArcConnector, allowing to draw spline paths, i.e. series of bezier curves.
KielerLayoutArcConnector(Site, Site) - Constructor for class ptolemy.vergil.modal.KielerLayoutArcConnector
Construct a new connector with the given tail and head for the specified link.
KielerLayoutConnector - Class in ptolemy.vergil.actor
An extension to LinkManhattanRouter supporting bend points for routing links provided by the corresponding relation.
KielerLayoutConnector(Site, Site, Link) - Constructor for class ptolemy.vergil.actor.KielerLayoutConnector
Construct a new connector with the given tail and head for the specified link.
KielerLayoutUtil - Class in ptolemy.vergil.actor
Static helper class for the KIELER classes implementing connector behavior, i.e. special edge routing mechanisms.
KielerLayoutUtil() - Constructor for class ptolemy.vergil.actor.KielerLayoutUtil
 
kill(String, boolean) - Method in class org.kepler.ssh.RemoteExec
 
kind - Variable in class ptolemy.data.expr.Token
An integer that describes the kind of this token.
kind - Variable in class ptolemy.moml.unit.Token
An integer that describes the kind of this token.
KMeansApply - Class in org.kepler.spark.mllib
 
KMeansApply(CompositeEntity, String) - Constructor for class org.kepler.spark.mllib.KMeansApply
 
KMeansClustering - Class in org.kepler.spark.mllib
 
KMeansClustering(CompositeEntity, String) - Constructor for class org.kepler.spark.mllib.KMeansClustering
 
kmeansCol - Variable in class org.kepler.spark.mllib.KMeansApply
Name to kmeans vector column (to append to dataframe)
kmeansCol - Variable in class org.kepler.spark.mllib.SantaAnaDetect
Name of the kmeans vector column in the input dataframe
KMeansModel - Class in org.kepler.spark.mllib
Train a KMeans model in Spark MLlib.
KMeansModel(CompositeEntity, String) - Constructor for class org.kepler.spark.mllib.KMeansModel
 
KML_TIMESTAMP_FORMAT - Static variable in class org.kepler.gis.actor.kml.WriteTimestampToKML
Format for KML timestamps.
KMLCombineFiles - Class in org.kepler.gis.actor.kml
An actor that combines KML files into a single KML file.
KMLCombineFiles(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.kml.KMLCombineFiles
 
KMLWriter - Class in org.kepler.gis.actor.kml
An actor that writes a vector/feature data set to a KML file.
KMLWriter(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.kml.KMLWriter
 
KnownWorkflowRunEnginePanel - Class in org.kepler.workflowscheduler.gui.configurationwizard
 
KnownWorkflowRunEnginePanel(WorkflowRunEngine[]) - Constructor for class org.kepler.workflowscheduler.gui.configurationwizard.KnownWorkflowRunEnginePanel
Constructor
KnownWorkflowRunEngineTableModel - Class in org.kepler.workflowscheduler.gui.configurationwizard
A table model represents the data model for display a known workflow run engines.
KnownWorkflowRunEngineTableModel(WorkflowRunEngine[]) - Constructor for class org.kepler.workflowscheduler.gui.configurationwizard.KnownWorkflowRunEngineTableModel
Constructor
Kp - Variable in class ptolemy.domains.de.lib.PID
Proportional gain of the controller.

L

l2norm(Complex[]) - Static method in class ptolemy.math.ComplexArrayMath
Return a double that is the L2-norm of the array.
l2norm(double[]) - Static method in class ptolemy.math.DoubleArrayMath
Return the L2-norm of the array, that is, the square root of the sum of the squares of the elements.
l2norm(float[]) - Static method in class ptolemy.math.FloatArrayMath
Return the L2-norm of the array, that is, the square root of the sum of the squares of the elements.
l2normSquared(Complex[]) - Static method in class ptolemy.math.ComplexArrayMath
Return a double that is the sum of the squared magnitudes of the elements of array.
LABEL - Static variable in class org.ecoinformatics.seek.ecogrid.MetadataSpecificationInterface
Description of the Field
label - Variable in class org.kepler.tagging.gui.CBItems.ExistingConceptCBItem
 
label() - Method in class ptolemy.data.UnionToken
Return the label of this token.
label - Variable in class ptolemy.domains.modal.kernel.ia.InterfaceAutomatonTransition
The label of this transition.
label(Object) - Method in class ptolemy.graph.LabeledList
Return the label of the specified element.
LABEL_COMPONENT_GAP_COLSPEC - Static variable in class com.jgoodies.forms.factories.FormFactory
Describes a logical horizontal gap between a label and an associated component.
labelDeleted(DeletableColorIconLabelEvent) - Method in interface org.kepler.tagging.gui.DeletableColorIconLabelListener
 
labelDeleted(DeletableColorIconLabelEvent) - Method in class org.kepler.tagging.gui.ExistingTagsPanel
 
labelDeleted(DeletableColorIconLabelEvent, boolean) - Method in class org.kepler.tagging.gui.ExistingTagsPanel
 
labelEachRegion - Variable in class org.kepler.gis.actor.bbox.CoverBoundingBox
If true, each region is given a unique label.
labelEachRegion - Variable in class org.kepler.gis.actor.SplitBoundingBox
Deprecated.
If true, each region is given a unique label.
LabeledList - Class in ptolemy.graph
A list of unique objects (elements) with a mapping from the elements into consecutive integer labels.
LabeledList() - Constructor for class ptolemy.graph.LabeledList
Construct an empty list.
LabeledList(int) - Constructor for class ptolemy.graph.LabeledList
Construct an empty list with enough storage allocated to hold the specified number of elements.
LabelPanel - Class in org.kepler.reporting.gui
 
LabelPanel() - Constructor for class org.kepler.reporting.gui.LabelPanel
 
LABELPREFERWIDTH - Static variable in class org.ecoinformatics.seek.ecogrid.ServicesDisplayPanel
 
labels - Variable in class org.kepler.reporting.rio.Item
 
labels - Variable in class org.surge.RecordToStrings
 
labels - Variable in class org.surge.StringsToRecord
 
labelSelected(DeletableColorIconLabelEvent) - Method in interface org.kepler.tagging.gui.DeletableColorIconLabelListener
 
labelSelected(DeletableColorIconLabelEvent) - Method in class org.kepler.tagging.gui.ExistingTagsPanel
 
labelSet() - Method in class ptolemy.data.RecordToken
Return the labels of this token as a Set.
labelSet() - Method in class ptolemy.data.type.RecordType
Return the labels of this record type as a Set.
labelSet() - Method in class ptolemy.data.type.UnionType
Return the labels of this record type as a Set.
lambda - Variable in class ptolemy.actor.lib.colt.ColtExponential
The mean value of the exponential.
lambda - Variable in class ptolemy.actor.lib.colt.ColtGamma
The variance, or lambda.
language - Variable in class org.kepler.scriptengine.ScriptEngineActor
The script language.
LARGE_ICON - Static variable in class org.kepler.tagging.gui.ToolbarUtilities
This key is used in an action to specify an icon used in toolbars.
last() - Method in class ptolemy.kernel.util.NamedList
Get the last element.
lastIndexOf(Object) - Method in class ptolemy.graph.LabeledList
Returns the index in this list of the last occurrence of the specified element, or -1 if this list does not contain this element.
lastScheduledActorFinished() - Method in interface ptolemy.actor.ActorExecutionAspect
Check whether last actor that was scheduled on this resource scheduler finished execution.
lastUpdated - Variable in class ptolemy.vergil.kernel.attributes.IDAttribute
The date that this model was last updated.
latMax - Variable in class org.geon.Interpolate
Maximum latitude
latMin - Variable in class org.geon.Interpolate
Minimum latitude
Lattice - Class in ptolemy.actor.lib
An FIR filter with a lattice structure.
Lattice(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Lattice
Construct an actor with the given container and name.
lattice() - Static method in class ptolemy.data.type.TypeLattice
Return the an instance of CPO representing the infinite type lattice.
LaunchBrowser() - Constructor for class org.geon.BrowserDisplay.LaunchBrowser
 
layersetFilename - Variable in class org.ecoinformatics.seek.garp.GarpPrediction
This is the file name of the *.dxl file used to summarize the set of spatial data files with environmental data for each pixel.
layersetFilename - Variable in class org.ecoinformatics.seek.garp.GarpPresampleLayers
This input port can be used to supply the file name of the xml file that summarizes all the spatial layers to be used in the GARP calculation.
layersetFilenameParameter - Variable in class org.ecoinformatics.seek.garp.GarpPrediction
This is the file name of the *.dxl file used to summarize the set of spatial data files with environmental data for each pixel.
layersetFilenameParameter - Variable in class org.ecoinformatics.seek.garp.GarpPresampleLayers
This parameter is the file name of the xml file that summarizes all the spatial layers to be used in the GARP calculation.
layout(Object) - Method in class ptolemy.vergil.actor.ActorViewerGraphController.EntityLayout
Layout the ports of the specified node.
layout(Object) - Method in class ptolemy.vergil.basic.layout.kieler.KielerLayout
Layout the given composite.
LayoutConstraintsManager - Class in org.mlc.swing.layout
This class handles the serialization and deserialization of the xml files that we are using to store the layout constraints.
LayoutConstraintsManager() - Constructor for class org.mlc.swing.layout.LayoutConstraintsManager
This method will create a LayoutConstraintsManager with default JGoodies row and column specs that are common in applications.
LayoutConstraintsManager(String, String) - Constructor for class org.mlc.swing.layout.LayoutConstraintsManager
This method will create a LayoutConstraintsManager with the JGoodies specs provided as default
layoutContainer(Container) - Method in class com.jgoodies.forms.layout.FormLayout
Lays out the specified container using this form layout.
layoutContainer(Container) - Method in class org.mlc.swing.layout.ContainerLayout
 
LayoutFrame - Class in org.mlc.swing.layout
This is the frame that enables you to build a layout.
LayoutFrame(LayoutConstraintsManager) - Constructor for class org.mlc.swing.layout.LayoutFrame
Creates a new instance of Class
LayoutHint - Class in ptolemy.vergil.actor
A LayoutHint is an Attribute for Ptolemy Relations that holds the specification of bend points for links.
LayoutHint(NamedObj, String) - Constructor for class ptolemy.vergil.actor.LayoutHint
Construct an attribute with the given container and name.
LayoutHint(Workspace) - Constructor for class ptolemy.vergil.actor.LayoutHint
Construct a new attribute with no container and an empty string as a name.
LayoutHint.LayoutHintItem - Class in ptolemy.vergil.actor
A LayoutHintItem is the specification of layout information for one Link.
LayoutHintItem(NamedObj, NamedObj) - Constructor for class ptolemy.vergil.actor.LayoutHint.LayoutHintItem
Simple constructor specifying only head and tail for this LayoutHintItem.
LayoutHintItem(NamedObj, NamedObj, Point2D.Double, Point2D.Double, int, int, Point2D.Double) - Constructor for class ptolemy.vergil.actor.LayoutHint.LayoutHintItem
Constructor passing not only head and tail but also all required layout information for the conditions under which this LayoutHintItem is only valid.
layoutParam - Variable in class org.kepler.monitor.test.ActorWithProgressBar
 
LayoutStyle - Class in com.jgoodies.forms.util
An abstract class that describes a layout and design style guide.
LayoutStyle() - Constructor for class com.jgoodies.forms.util.LayoutStyle
 
LayoutTableau - Class in ptolemy.actor.gui.run
A run control pane for the model.
LayoutTableau(PtolemyEffigy, String, CustomizableRunPane) - Constructor for class ptolemy.actor.gui.run.LayoutTableau
Create a new run control panel for the model with the given effigy.
lazyAllAtomicEntityList() - Method in class ptolemy.actor.LazyTypedCompositeActor
Return a list that consists of all the atomic entities in a model that have been already instantiated.
lazyAllAtomicEntityList() - Method in class ptolemy.kernel.CompositeEntity
lazyAllCompositeEntityList() - Method in class ptolemy.actor.LazyTypedCompositeActor
Lazy version of {#link #allCompositeEntityList()}.
lazyAllCompositeEntityList() - Method in class ptolemy.kernel.CompositeEntity
Lazy version of {#link #allCompositeEntityList()}.
lazyAllCompositeTransparentAndOpaqueEntityList() - Method in class ptolemy.kernel.CompositeEntity
Return all the transparent and opaque composites.
lazyClassDefinitionList() - Method in class ptolemy.actor.LazyTypedCompositeActor
lazyClassDefinitionList() - Method in class ptolemy.kernel.CompositeEntity
LazyComposite - Interface in ptolemy.kernel.util
A marker interface for lazy composites.
lazyContainedObjectsIterator() - Method in class ptolemy.actor.LazyTypedCompositeActor
Return an iterator over contained object that currently exist, omitting any objects that have not yet been instantiated because they are "lazy".
lazyContainedObjectsIterator() - Method in class ptolemy.kernel.util.NamedObj
Return an iterator over contained object that currently exist, omitting any objects that have not yet been instantiated because they are "lazy".
lazyContainedObjectsIterator() - Method in class ptolemy.moml.EntityLibrary
Override the base class to prevent populating.
lazyDeepEntityList() - Method in class ptolemy.actor.LazyTypedCompositeActor
lazyDeepEntityList() - Method in class ptolemy.kernel.CompositeEntity
lazyEntityList() - Method in class ptolemy.actor.LazyTypedCompositeActor
lazyEntityList() - Method in class ptolemy.kernel.CompositeEntity
lazyRelationList() - Method in class ptolemy.actor.LazyTypedCompositeActor
lazyRelationList() - Method in class ptolemy.kernel.CompositeEntity
LazyTypedCompositeActor - Class in ptolemy.actor
An aggregation of typed actors with lazy evaluation.
LazyTypedCompositeActor() - Constructor for class ptolemy.actor.LazyTypedCompositeActor
Construct a library in the default workspace with no container and an empty string as its name.
LazyTypedCompositeActor(Workspace) - Constructor for class ptolemy.actor.LazyTypedCompositeActor
Construct a library in the specified workspace with no container and an empty string as a name.
LazyTypedCompositeActor(CompositeEntity, String) - Constructor for class ptolemy.actor.LazyTypedCompositeActor
Construct a library with the given container and name.
LazyTypedCompositeActor.ContainedObjectsIterator - Class in ptolemy.actor
This class is an iterator over all the contained objects (all instances of NamedObj) except those that have not yet been instantiated because of laziness.
LazyTypedCompositeActorChanges - Class in ptolemy.moml.filter
When this class is registered with the MoMLParser.setMoMLFilter() method, it will cause MoMLParser to filter so that all the TypedCompositeActors except those within actor oriented class definitions are changed to LazyTypedCompositeActors.
LazyTypedCompositeActorChanges() - Constructor for class ptolemy.moml.filter.LazyTypedCompositeActorChanges
 
lcm(int, int) - Static method in class ptolemy.math.Fraction
Finds the least common multiple(LCM) of two integers.
lcpmake - Variable in class org.kepler.gis.actor.landscape.CreateLandscape
Path and name to lcpmake program.
LDAPAuthenticationService - Class in org.kepler.authentication
Authenticates a user against LDAP
LDAPAuthenticationService() - Constructor for class org.kepler.authentication.LDAPAuthenticationService
 
LDAPLoginGUI - Class in org.kepler.authentication.gui
LoginGUI pops up the login dialog to let user login, retrieves credential from GAMA server, and stores the credential into ProxyRepository.
LDAPLoginGUI() - Constructor for class org.kepler.authentication.gui.LDAPLoginGUI
The constructor is used to build all the display components
leak() - Static method in class ptolemy.moml.test.MoMLParserLeak
Attempt to leak code by parsing MoML that looks for a class that does not exist.
leastElement(Set<T>) - Method in interface ptolemy.graph.CPO
Compute the least element of a subset.
leastElement(Set<Object>) - Method in class ptolemy.graph.DirectedAcyclicGraph
Compute the least element of a subset.
leastUpperBound(Type, Type) - Static method in class ptolemy.data.type.TypeLattice
Return the least upper bound of the two given types.
leastUpperBound(Object, Object) - Method in interface ptolemy.graph.CPO
Compute the least upper bound (LUB) of two elements.
leastUpperBound(Set<T>) - Method in interface ptolemy.graph.CPO
Compute the least upper bound (LUB) of a subset.
leastUpperBound(Object, Object) - Method in class ptolemy.graph.DirectedAcyclicGraph
Compute the least upper bound (LUB) of two elements.
leastUpperBound(Set<Object>) - Method in class ptolemy.graph.DirectedAcyclicGraph
Compute the least upper bound (LUB) of a subset.
LEDMatrix - Class in ptolemy.vergil.actor.lib
An actor that displays an array of LEDs.
LEDMatrix(CompositeEntity, String) - Constructor for class ptolemy.vergil.actor.lib.LEDMatrix
Construct an actor with the given container and name.
Leds - Class in ptolemy.component.test
Display received argument value to the std output.
Leds(CompositeEntity, String) - Constructor for class ptolemy.component.test.Leds
Construct an actor with the given container and name.
left() - Method in class com.jgoodies.forms.factories.Borders.EmptyBorder
Returns this border's left size.
LEFT - Static variable in class com.jgoodies.forms.layout.CellConstraints
Put the component in the left.
LEFT - Static variable in class com.jgoodies.forms.layout.ColumnSpec
By default put components in the left.
left - Variable in class org.kepler.gis.actor.SplitBoundingBox
Deprecated.
The longitude of the left of the bounding box.
LEFT - Static variable in class org.mlc.swing.layout.LayoutConstraintsManager
 
left - Variable in class ptolemy.actor.lib.logic.Comparator
The left input port, which has type double.
leftArrow - Variable in class ptolemy.actor.lib.gui.ArrowKeySensor
Output port, which has type IntToken.
leftChild - Variable in class ptolemy.actor.lib.comm.HuffmanBasic.Node
The left child of the node.
leftPadding - Static variable in class org.geon.TernaryDiagram
 
LEFTPARENTH - Static variable in class org.ecoinformatics.seek.dataquery.DBTablesGenerator
 
LEFTPARENTH - Static variable in interface org.kepler.objectmanager.data.db.Constraint
 
leftShift(int) - Method in class ptolemy.data.IntToken
Returns a token representing the result of shifting the bits of this token towards the most significant bit, filling the least significant bits with zeros.
leftShift(int) - Method in class ptolemy.data.LongToken
Returns a token representing the result of shifting the bits of this token towards the most significant bit, filling the least significant bits with zeros.
leftShift(int) - Method in class ptolemy.data.ScalarToken
Returns a token representing the result of shifting the bits of this token towards the most significant bit, filling the least significant bits with zeros.
leftShift(int) - Method in class ptolemy.data.ShortToken
Returns a token representing the result of shifting the bits of this token towards the most significant bit, filling the least significant bits with zeros.
leftShift(int) - Method in class ptolemy.data.UnsignedByteToken
Returns a token representing the result of shifting the bits of this token towards the most significant bit, filling the least significant bits with zeros.
legend - Variable in class ptolemy.actor.lib.gui.PlotterBase
A comma-separated list of labels to attach to each data set.
LempelZivCoder - Class in ptolemy.actor.lib.comm
Lempel-Ziv encoder.
LempelZivCoder(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.comm.LempelZivCoder
Construct an actor with the given container and name.
LempelZivDecoder - Class in ptolemy.actor.lib.comm
Lempel-Ziv decoder.
LempelZivDecoder(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.comm.LempelZivDecoder
Construct an actor with the given container and name.
length() - Method in class org.json.JSONArray
Get the number of elements in the JSONArray, included nulls.
length() - Method in class org.json.JSONObject
Get the number of keys stored in the JSONObject.
length - Variable in class ptolemy.actor.lib.gui.SketchedSource
The length of the output signal that will be generated.
length() - Method in class ptolemy.data.ArrayToken
Return the length of the contained token array.
length() - Method in class ptolemy.data.RecordToken
Return the length of this token.
length() - Method in class ptolemy.data.TupleToken
Return the length of the contained token array.
length() - Method in class ptolemy.data.type.ArrayType
Return the length of this array type.
length() - Method in class ptolemy.data.UpdatedArrayToken
Return the length of the contained token array.
length() - Method in class ptolemy.domains.modal.kernel.RelationList
Return the number of relations in the relation list.
length - Variable in class ptolemy.domains.sdf.lib.RaisedCosine
The length of the pulse.
LENGTH_EXPONENT - Static variable in class ptolemy.math.Precision
static LengthExponentPrecisionFormat object.
LENGTH_INTEGER - Static variable in class ptolemy.math.Precision
static LengthIntegerPrecisionFormat object.
LengthExponentPrecisionFormat() - Constructor for class ptolemy.math.Precision.LengthExponentPrecisionFormat
 
LengthIntegerPrecisionFormat() - Constructor for class ptolemy.math.Precision.LengthIntegerPrecisionFormat
 
lengthNoGaps() - Method in class org.sdm.spa.actors.piw.viz.Sequence
 
LESS_THAN - Static variable in interface ptolemy.actor.util.Dependency
Return value of compareTo() if this is less than the argument.
LESS_THAN - Static variable in class ptolemy.domains.modal.kernel.RelationType
Relation type a relation node that is evaluated to be false and the left token is less than the right token, while the relation operation is not equal or inequal.
LETTER - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
LETTER - Static variable in interface ptolemy.moml.unit.UParserConstants
RegularExpression Id.
letTimePass(double, boolean) - Method in class ptolemy.component.domains.ptinyos.PtinyOSDirector
Call fireAtRelativeTime() with the specified time interval and then suspend the calling thread.
level - Variable in class ptolemy.domains.continuous.lib.LevelCrossingDetector
The parameter that specifies the level threshold.
LevelCrossingDetector - Class in ptolemy.domains.continuous.lib
An event detector that converts continuous signals to discrete events when the input trigger signal crosses a threshold specified by the level parameter.
LevelCrossingDetector(CompositeEntity, String) - Constructor for class ptolemy.domains.continuous.lib.LevelCrossingDetector
Construct an actor in the specified container with the specified name.
levelMap - Variable in class ptolemy.actor.lib.image.PGMReader
A mapping between image input and output values to generate a quantized output.
levels - Variable in class ptolemy.actor.lib.Quantizer
The quantization levels.
LevelSkippingTableauFactory - Class in ptolemy.actor.gui
This class is an attribute that creates a tableau to view an object contained by the model associated with the specified effigy.
LevelSkippingTableauFactory(NamedObj, String) - Constructor for class ptolemy.actor.gui.LevelSkippingTableauFactory
Create a factory with the given name and container.
LevinsonDurbin - Class in ptolemy.actor.lib
This actor uses the Levinson-Durbin algorithm to compute the linear predictor coefficients of a random process, given its autocorrelation function as an input.
LevinsonDurbin(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.LevinsonDurbin
Construct an actor in the specified container with the specified name.
LexicalError(boolean, int, int, int, String, char) - Static method in error ptolemy.data.expr.TokenMgrError
Returns a detailed message for the Error when it is thrown by the token manager to indicate a lexical error.
LexicalError(boolean, int, int, int, String, char) - Static method in error ptolemy.moml.unit.TokenMgrError
Returns a detailed message for the Error when it is thrown by the token manager to indicate a lexical error.
lexicalOrder() - Method in class ptolemy.graph.sched.Schedule
Get the lexical order of firing elements.
lexStateNames - Static variable in class ptolemy.data.expr.MatrixParserTokenManager
Lexer state names.
lexStateNames - Static variable in class ptolemy.data.expr.PtParserTokenManager
Lexer state names.
lexStateNames - Static variable in class ptolemy.moml.unit.UParserTokenManager
Lexer state names.
LIB_SEARCH_TABLE_NAME - Static variable in class org.kepler.objectmanager.library.LibSearch
the name of the table in the database
liberalLink(ComponentRelation) - Method in class ptolemy.actor.IOPort
Override the base class to invalidate the schedule and resolved types of the director of the container, if there is one, in addition to what the base class does.
liberalLink(ComponentRelation) - Method in class ptolemy.kernel.ComponentPort
Link this port with the specified relation.
LibIndex - Class in org.kepler.objectmanager.library
A library index for keeping track of the tree structure in the component library.
LibIndex(Connection) - Constructor for class org.kepler.objectmanager.library.LibIndex
A constructor that is given a connection to the database.
LibItem - Class in org.kepler.objectmanager.library
The LibItem class represents one node of the Component Library Tree.
LibItem() - Constructor for class org.kepler.objectmanager.library.LibItem
public constructor
LibLsidViewerAction - Class in org.kepler.gui.lsid
An action for viewing the LSID and LSID Referral List (aka Derived From list) in a popup dialog box.
LibLsidViewerAction(TableauFrame) - Constructor for class org.kepler.gui.lsid.LibLsidViewerAction
 
Librariable - Interface in ptolemy.actor
Classes that implement this interface are assumed to be in the actor library.
library - Variable in class org.kepler.gui.LibrarySearchResultPane
the library for the result pane
LIBRARY_ATTRIBUTES_TABLE_NAME - Static variable in class org.kepler.objectmanager.library.LibIndex
the name of the table in the database used to store attributes
LIBRARY_ATTRIBUTES_TABLE_NAME - Static variable in class org.kepler.objectmanager.library.LibItem
the name of the table in the database used to store attributes
LIBRARY_INDEX_TABLE_NAME - Static variable in class org.kepler.objectmanager.library.LibIndex
the name of the table in the database
LIBRARY_LSIDS_TABLE_NAME - Static variable in class org.kepler.objectmanager.library.LibIndex
the name of the table in the database used to store attributes
LibraryActionHandler() - Constructor for class org.kepler.gui.ComponentLibraryTab.LibraryActionHandler
 
LibraryAttribute - Class in ptolemy.moml
This class is a configurable singleton attribute that associates a component library with a model.
LibraryAttribute() - Constructor for class ptolemy.moml.LibraryAttribute
Construct a new attribute with no container and an empty string as its name.
LibraryAttribute(Workspace) - Constructor for class ptolemy.moml.LibraryAttribute
Construct a new attribute with no container and an empty string as a name.
LibraryAttribute(NamedObj, String) - Constructor for class ptolemy.moml.LibraryAttribute
Construct an attribute with the given container and name.
LibraryBuilder - Class in ptolemy.moml
An abstract class that defines the interface for LibraryBuilder.
LibraryBuilder() - Constructor for class ptolemy.moml.LibraryBuilder
Construct a library builder.
LibraryGenerator - Class in org.kepler.objectmanager.library
This class is used for generating the Component Library from the prebuilt LibIndex.
LibraryGenerator() - Constructor for class org.kepler.objectmanager.library.LibraryGenerator
 
LibraryManager - Class in org.kepler.objectmanager.library
The LibraryManager is used for managing the Actor Library.
LibraryManager() - Constructor for class org.kepler.objectmanager.library.LibraryManager
constructor called from getInstance()
LibraryPopup - Class in org.kepler.gui.popups
A class for organizing popup menus in the Library.
LibraryPopup() - Constructor for class org.kepler.gui.popups.LibraryPopup
 
LibraryPopup(TreePath, Component) - Constructor for class org.kepler.gui.popups.LibraryPopup
 
LibraryPopup(TreePath, PtolemyFrame) - Constructor for class org.kepler.gui.popups.LibraryPopup
 
LibraryPopupListener - Class in org.kepler.gui.popups
 
LibraryPopupListener(AnnotatedPTree) - Constructor for class org.kepler.gui.popups.LibraryPopupListener
 
LibrarySearcher - Class in org.kepler.gui
this abstract class is should be extended by all classes that provide a search engine for the actory library.
LibrarySearcher(JTree, LibrarySearchPane) - Constructor for class org.kepler.gui.LibrarySearcher
constructor
LibrarySearchPane - Class in org.kepler.gui
LibrarySearchPane provides and interface for the search panel in the actor library
LibrarySearchPane(ActionListener) - Constructor for class org.kepler.gui.LibrarySearchPane
constructor
LibrarySearchResultPane - Class in org.kepler.gui
LibrarySearchResultPane provides an interface that should be used by all classes that can display the Kepler search results panel.
LibrarySearchResultPane(PTree, LibrarySearchResults) - Constructor for class org.kepler.gui.LibrarySearchResultPane
constructor. this initializes the library and results variables as well as sets the layout for the panel. update is automatically called from here as well.
LibrarySearchResultPaneFactory - Class in org.kepler.gui
This class creates a pane that displays the search results.
LibrarySearchResultPaneFactory(NamedObj, String) - Constructor for class org.kepler.gui.LibrarySearchResultPaneFactory
Create a factory with the given name and container.
LibrarySearchResults - Class in org.kepler.gui
A class to contain the search results from the library.
LibrarySearchResults() - Constructor for class org.kepler.gui.LibrarySearchResults
constructor
LibSearch - Class in org.kepler.objectmanager.library
 
LibSearch() - Constructor for class org.kepler.objectmanager.library.LibSearch
A constructor that creates a new connection to the database.
LibSearch(Connection) - Constructor for class org.kepler.objectmanager.library.LibSearch
A constructor that is given a connection to the database.
LibSearchConfiguration - Class in org.kepler.objectmanager.library
 
LibSearchConfiguration() - Constructor for class org.kepler.objectmanager.library.LibSearchConfiguration
 
LidarJobConfig - Class in org.geon
Thread for executing the Lidar processing.
LidarJobConfig() - Constructor for class org.geon.LidarJobConfig
 
LidarJobConfig(String) - Constructor for class org.geon.LidarJobConfig
 
LidarJobDB - Class in org.geon
Thread for executing the Lidar processing.
LidarJobDB(String) - Constructor for class org.geon.LidarJobDB
 
LidarJobDB(String, String) - Constructor for class org.geon.LidarJobDB
 
LidarUtilities - Class in org.geon
Thread for executing the Lidar processing.
LidarUtilities(StringBuffer, String, String, String) - Constructor for class org.geon.LidarUtilities
 
LidarWorkflowExecute - Class in org.geon
Creates and Invokes the lidar workflow on the fly from portlet inputs.
LidarWorkflowExecute() - Constructor for class org.geon.LidarWorkflowExecute
 
LifeCycleManager - Class in ptolemy.actor.lib.hoc
This is a composite actor with some services for life-cycle management.
LifeCycleManager() - Constructor for class ptolemy.actor.lib.hoc.LifeCycleManager
Construct an actor in the default workspace with no container and an empty string as its name.
LifeCycleManager(Workspace) - Constructor for class ptolemy.actor.lib.hoc.LifeCycleManager
Construct a LifeCycleManager in the specified workspace with no container and an empty string as a name.
LifeCycleManager(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.hoc.LifeCycleManager
Construct a LifeCycleManager with a name and a container.
LifeTime - Class in org.kepler.authentication
LifeTime is used to set and retrieve the lifetime information for users proxies.
LifeTime() - Constructor for class org.kepler.authentication.LifeTime
 
LIID_LABEL - Static variable in class org.kepler.objectmanager.library.LibraryManager
The LIID_LABEL is used as the name of the String Attribute that is attached to Tree Items to keep track of their Library Index ID.
LIKE - Static variable in class org.ecoinformatics.seek.dataquery.DBTablesGenerator
 
limit - Variable in class ptolemy.domains.pn.lib.Starver
The limit on the number of tokens that can be transferred from the input to the output.
limit(Complex[], Complex, Complex) - Static method in class ptolemy.math.ComplexArrayMath
Return a new array that is a copy of the first argument except that the elements are limited to lie within the specified range.
limit(double[], double, double) - Static method in class ptolemy.math.DoubleArrayMath
Return a new array that is a copy of the argument except that the elements are limited to lie within the specified range.
limit(float[], float, float) - Static method in class ptolemy.math.FloatArrayMath
Return a new array that is a copy of the argument except that the elements are limited to lie within the specified range.
limit(int[], int, int) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array that is a copy of the argument except that the elements are limited to lie within the specified range.
limit(long[], long, long) - Static method in class ptolemy.math.LongArrayMath
Return a new array that is a copy of the argument except that the elements are limited to lie within the specified range.
LimitedFiringSource - Class in ptolemy.actor.lib
Base class for source actors that will only fire a limited number of times.
LimitedFiringSource(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.LimitedFiringSource
Construct an actor with the given container and name.
Limiter - Class in ptolemy.actor.lib
Produce an output token on each firing with a value that is equal to the input if the input lies between the bottom and top parameters.
Limiter(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Limiter
Construct an actor with the given container and name.
lin2mu(int) - Static method in class ptolemy.media.Audio
Convert an integer linear representation of an audio sample into a mu-255 companded representation.
line - Variable in class org.kepler.actor.MappedLogger
The text to be printed into the log.
line - Variable in class ptolemy.data.expr.SimpleCharStream
 
line - Variable in class ptolemy.moml.unit.SimpleCharStream
 
LINE_GAP_ROWSPEC - Static variable in class com.jgoodies.forms.factories.FormFactory
Describes the logical vertical default gap between two rows in the grid.
LINE_SEPARATOR - Static variable in class ptolemy.util.StringUtilities
The line separator string.
LinearDifferenceEquationSystem - Class in ptolemy.actor.lib
Linear Difference Equation System.
LinearDifferenceEquationSystem(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.LinearDifferenceEquationSystem
Construct an actor with the given container and name.
linearInterpolate(TimedEvent, TimedEvent) - Method in class ptolemy.domains.continuous.lib.ContinuousTimeDelay
Linear interpolate between previous and current input.
linearlyInterpolate - Variable in class ptolemy.domains.continuous.kernel.Noise
If true, linearly between random number for multistep solvers, and otherwise, perform zero-order hold.
linearPredictor - Variable in class ptolemy.actor.lib.LevinsonDurbin
The output for linear predictor coefficients.
LinearStateSpace - Class in ptolemy.domains.continuous.lib
Linear state space model in the CT domain.
LinearStateSpace(CompositeEntity, String) - Constructor for class ptolemy.domains.continuous.lib.LinearStateSpace
Construct the composite actor with a name and a container.
LinearStateSpace(Workspace) - Constructor for class ptolemy.domains.continuous.lib.LinearStateSpace
Construct a LinearStateSpace in the specified workspace with no container and an empty string as a name.
LineAttribute - Class in ptolemy.vergil.kernel.attributes
This is an attribute that is rendered as a line.
LineAttribute(NamedObj, String) - Constructor for class ptolemy.vergil.kernel.attributes.LineAttribute
Construct an attribute with the given name contained by the specified container.
LineCoder - Class in ptolemy.domains.sdf.lib
A line coder, which converts a sequence of booleans into symbols.
LineCoder(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.LineCoder
Construct an actor with the given container and name.
lineColor - Variable in class ptolemy.vergil.kernel.attributes.ShapeAttribute
The line color.
LineInputFormat - Class in org.kepler.hadoop.io.input
This class extend TextInputFormat class to read lines in each map function.
LineInputFormat() - Constructor for class org.kepler.hadoop.io.input.LineInputFormat
 
LineReader - Class in ptolemy.actor.lib.io
This actor reads a file or URL, one line at a time, and outputs each line as a string.
LineReader(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.io.LineReader
Construct an actor with the given container and name.
lines - Variable in class org.kepler.ddp.actor.pattern.stub.StubSinkActor
Line(s) of text that will be converted into key-value pairs.
LINESEP - Static variable in class org.camera.service.ServiceUtils
 
LINESEP - Static variable in class org.kepler.actor.rest.ServiceUtils
 
LineStyle - Class in ptolemy.actor.gui.style
This attribute annotates user settable attributes to specify an arbitrary type-in line style for configuring the containing attribute.
LineStyle() - Constructor for class ptolemy.actor.gui.style.LineStyle
Construct an attribute in the default workspace with an empty string as its name.
LineStyle(Workspace) - Constructor for class ptolemy.actor.gui.style.LineStyle
Construct an attribute in the given workspace with an empty string as its name.
LineStyle(NamedObj, String) - Constructor for class ptolemy.actor.gui.style.LineStyle
Construct an attribute with the specified container and name.
lineWidth - Variable in class ptolemy.vergil.kernel.attributes.ShapeAttribute
The line width.
LineWriter - Class in ptolemy.actor.lib.io
This actor reads string-valued input tokens and writes them, one line at a time, to a specified file.
LineWriter(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.io.LineWriter
Construct an actor with the given container and name.
lingerTime - Variable in class ptolemy.actor.lib.hoc.ModelReference
The amount of time (in milliseconds) to linger in the fire() method of this actor.
link(Relation) - Method in class ptolemy.actor.IOPort
Override the base class to invalidate the schedule and resolved types of the director of the container, if there is one, in addition to what the base class does.
link(Relation) - Method in class ptolemy.actor.lib.hoc.RefinementPort
Set the connected relation to a bus if this port is a multiport.
link(Relation) - Method in class ptolemy.domains.modal.modal.RefinementPort
Set the connected relation to a bus if this port is a multiport.
link(Relation) - Method in class ptolemy.domains.modal.modal.TransitionRefinementPort
Override the base class to avoid linking a sibling input port to the same relation as the sibling output port multiple times.
link(Relation) - Method in class ptolemy.kernel.ComponentPort
Link this port with the specified relation.
link(Relation) - Method in class ptolemy.kernel.Port
Link this port with a relation, and notify the container by calling its connectionsChanged() method.
link(Relation) - Method in class ptolemy.kernel.Relation
Link this relation with another relation.
link(CrossRefList) - Method in class ptolemy.kernel.util.CrossRefList
Link this list to a different CrossRefList (farList).
Link - Class in ptolemy.vergil.kernel
Instances of this class represent a link between a port and a relation, between two relations, or a between two ports.
Link() - Constructor for class ptolemy.vergil.kernel.Link
 
LinkChangeListener(Link, CompositeEntity, StringBuffer) - Constructor for class ptolemy.vergil.actor.ActorGraphModel.LinkModel.LinkChangeListener
Construct a link change listener.
LinkController - Class in ptolemy.vergil.actor
This class provides interaction techniques for edges that are to be connected between ports and relations.
LinkController(GraphController) - Constructor for class ptolemy.vergil.actor.LinkController
Create a link controller associated with the specified graph controller.
LinkController.LinkDropper - Class in ptolemy.vergil.actor
An inner class that handles interactive changes to connectivity.
LinkController.LinkRenderer - Class in ptolemy.vergil.actor
Render a visual representation of a link.
LinkController.LinkTarget - Class in ptolemy.vergil.actor
A connector target that returns sites on a link.
LinkCreator() - Constructor for class ptolemy.vergil.actor.ActorEditorGraphController.LinkCreator
 
LinkCreator() - Constructor for class ptolemy.vergil.modal.FSMGraphController.LinkCreator
 
LinkDropper() - Constructor for class ptolemy.vergil.actor.LinkController.LinkDropper
 
LinkDropper() - Constructor for class ptolemy.vergil.modal.TransitionController.LinkDropper
 
linkedDestinationPortList() - Method in class ptolemy.actor.IORelation
List the input ports that this relation connects to from the outside, and the output ports that it connects to from the inside.
linkedDestinationPortList(IOPort) - Method in class ptolemy.actor.IORelation
List the input ports that this relation connects to from the outside and the output ports that it connects to from the inside, except the port given as an argument.
linkedDestinationPorts() - Method in class ptolemy.actor.IORelation
Deprecated.
Use linkedDestinationPortList() instead.
linkedDestinationPorts(IOPort) - Method in class ptolemy.actor.IORelation
Deprecated.
Use linkDestinationPortList(IOPort) instead.
linkedObjectsList() - Method in class ptolemy.kernel.Relation
Return a list of the objects directly linked to this relation (ports and relations).
linkedPortList() - Method in class ptolemy.kernel.Relation
List the ports linked to any relation in this relation's group.
linkedPortList(Port) - Method in class ptolemy.kernel.Relation
List the ports linked to any relation in this relation's group except the specified port.
linkedPorts() - Method in class ptolemy.kernel.Relation
Deprecated.
Use linkedPortList() instead.
linkedPorts(Port) - Method in class ptolemy.kernel.Relation
Deprecated.
Use linkedPortList(Port) instead.
linkedPorts() - Method in class ptolemy.moml.Vertex
Get the list of ports linked to this vertex.
linkedRelationList() - Method in class ptolemy.kernel.Entity
Get all relations that are linked to ports contained by this entity.
linkedRelationList() - Method in class ptolemy.kernel.Port
List the linked relations.
linkedRelations() - Method in class ptolemy.kernel.Entity
Deprecated.
Use linkedRelationList() instead.
linkedRelations() - Method in class ptolemy.kernel.Port
Enumerate the linked relations.
linkedSourcePortList() - Method in class ptolemy.actor.IORelation
List the output ports that this relation connects to from the outside and the input ports that it connects to from the inside.
linkedSourcePortList(IOPort) - Method in class ptolemy.actor.IORelation
List the output ports that this relation connects to from the outside and the input ports that it connects to from the inside, except the port given as an argument.
linkedSourcePorts() - Method in class ptolemy.actor.IORelation
Deprecated.
Use linkedSourcePortList() instead.
linkedSourcePorts(IOPort) - Method in class ptolemy.actor.IORelation
Deprecated.
Use linkedSourcePortList(IOPort) instead.
LinkManhattanConnector - Class in ptolemy.vergil.actor
An extension to BasicManhattanRouter supporting links to multiports.
LinkManhattanConnector(Site, Site, Link) - Constructor for class ptolemy.vergil.actor.LinkManhattanConnector
Construct a new connector with the given tail and head for the specified link.
LinkModel() - Constructor for class ptolemy.vergil.actor.ActorGraphModel.LinkModel
 
LinkRenderer() - Constructor for class ptolemy.vergil.actor.LinkController.LinkRenderer
 
LinkRenderer() - Constructor for class ptolemy.vergil.modal.TransitionController.LinkRenderer
 
LINKS - Static variable in class ptolemy.kernel.util.NamedObj
Indicate that the description(int) method should include the links (if any) that the object has.
LinkTarget() - Constructor for class ptolemy.vergil.actor.LinkController.LinkTarget
 
linkTarget - Variable in class ptolemy.vergil.basic.export.web.IconLink
Parameter specifying the target for the link.
linkTarget - Variable in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Parameter specifying the target for the link.
LinkTarget - Class in ptolemy.vergil.basic.export.web
Parameter specifying the target for an HTML link.
LinkTarget(NamedObj, String) - Constructor for class ptolemy.vergil.basic.export.web.LinkTarget
Create an instance of this parameter.
LinkTarget() - Constructor for class ptolemy.vergil.modal.TransitionController.LinkTarget
 
LinkToOpenTableaux - Class in ptolemy.vergil.basic.export.web
A parameter specifying default hyperlink to associate with icons in model.
LinkToOpenTableaux(NamedObj, String) - Constructor for class ptolemy.vergil.basic.export.web.LinkToOpenTableaux
Create an instance of this parameter.
linkToPublishedPort(String, IOPort) - Method in class ptolemy.actor.CompositeActor
Link the subscriberPort with a already registered "published port" coming from a publisher.
linkToPublishedPort(String, IOPort, boolean) - Method in class ptolemy.actor.CompositeActor
Link the subscriberPort with an already registered "published port" coming from a publisher.
linkToPublishedPort(Pattern, TypedIOPort) - Method in class ptolemy.actor.CompositeActor
Link the subscriberPort with a already registered "published port" coming from a publisher.
linkToPublishedPort(Pattern, TypedIOPort, boolean) - Method in class ptolemy.actor.CompositeActor
Link the subscriberPort with a already registered "published port" coming from a publisher.
LINUX - Static variable in class org.kepler.gui.StaticGUIResources
 
list() - Method in class org.kepler.io.DirectoryListing
Kept for compatibility with older codes.
list(boolean) - Method in class org.kepler.io.DirectoryListing
List the directory now.
list - Variable in class org.sdm.spa.ArchiveCounter
The output is record: a string containing the list of files to be archived together, and the first and last timesteps in the list.
listCVHullPts() - Method in class org.ecoinformatics.seek.gis.java_gis.ConvexHull
 
listenForEvent(FiringEvent.FiringEventType) - Method in class ptolemy.vergil.debugger.DebugProfile
Add this FiringEventType to the DebugProfile.
ListenToAction - Class in ptolemy.vergil.kernel
An action to listen to debug messages in the NamedObj.
ListenToAction(BasicGraphController, String) - Constructor for class ptolemy.vergil.kernel.ListenToAction
Construct an action that listens to NamedObj messages.
ListenToAction(NamedObj, BasicGraphController) - Constructor for class ptolemy.vergil.kernel.ListenToAction
Construct an action that listens to NamedObj messages.
ListenToActorAction(TableauFrame) - Constructor for class ptolemy.vergil.actor.ActorController.ListenToActorAction
Create an action to listen to debug messages.
ListenToActorAction(BasicGraphController) - Constructor for class ptolemy.vergil.actor.ActorController.ListenToActorAction
Create an action to listen to debug messages in the actor.
ListenToActorAction(NamedObj, BasicGraphController) - Constructor for class ptolemy.vergil.actor.ActorController.ListenToActorAction
Create an action to listen to debug messages in the actor.
listFiles(File, boolean, boolean, boolean, String) - Static method in class ptolemy.util.RecursiveFileFilter
List all the files and directories within the given directory.
listFiles(File, boolean, boolean, boolean, String, boolean) - Static method in class ptolemy.util.RecursiveFileFilter
List all the files and directories within the given directory.
listFiles(File, boolean, boolean, boolean, boolean, boolean, String) - Static method in class ptolemy.util.RecursiveFileFilter
List all the files and directories within the given directory.
listFiles(File, boolean, boolean, boolean, boolean, boolean, String, boolean) - Static method in class ptolemy.util.RecursiveFileFilter
List all the files and directories within the given directory.
listIterator() - Method in class ptolemy.graph.LabeledList
Return a list iterator over the elements in the list.
listIterator(int) - Method in class ptolemy.graph.LabeledList
Return a list iterator over the elements in this list, starting at a specified position in the list.
listOnlyDirectories - Variable in class ptolemy.actor.lib.io.DirectoryListing
If true, and directoryOrURL refers to a local directory (not a URL), then only directories will be listed on the output.
listOnlyFiles - Variable in class ptolemy.actor.lib.io.DirectoryListing
If true, and directoryOrURL refers to a local directory (not a URL), then only files will be listed on the output.
listRuns() - Static method in class org.kepler.provenance.manager.ProvenanceManager
List the runs.
LiveLink - Class in ptolemy.actor.gui
An attribute that provides a link to a specified URL.
LiveLink(NamedObj, String) - Constructor for class ptolemy.actor.gui.LiveLink
Construct a factory with the specified container and name.
LiveSines - Class in ptolemy.media.javasound.demo.LiveSines
A simple application that demonstrates the use of LiveSound.
LiveSines() - Constructor for class ptolemy.media.javasound.demo.LiveSines.LiveSines
 
LiveSound - Class in ptolemy.media.javasound
This class supports live capture and playback of audio samples.
LiveSound() - Constructor for class ptolemy.media.javasound.LiveSound
 
liveSoundChanged(LiveSoundEvent) - Method in interface ptolemy.media.javasound.LiveSoundListener
Notify that the an audio parameter of LiveSound has changed.
LiveSoundCommon - Class in ptolemy.media.javasound
Class containing the platform independent code of LiveSound actor.
LiveSoundCommon() - Constructor for class ptolemy.media.javasound.LiveSoundCommon
 
LiveSoundEvent - Class in ptolemy.media.javasound
A LiveSoundEvent represents a change in an audio parameter of LiveSound.
LiveSoundEvent(int) - Constructor for class ptolemy.media.javasound.LiveSoundEvent
Construct a LiveSoundEvent, with the specified parameter.
LiveSoundInterface - Interface in ptolemy.media.javasound
Interface for implementing for implementing LiveSoundActor on different platforms.
LiveSoundJavaSE - Class in ptolemy.media.javasound
Implementation of LiveSoundInterface that in dependent on javax.
LiveSoundJavaSE() - Constructor for class ptolemy.media.javasound.LiveSoundJavaSE
 
LiveSoundListener - Interface in ptolemy.media.javasound
This interface is implemented by objects that are interested in being kept informed about changes in the audio parameters of LiveSound.
LMSAdaptive - Class in ptolemy.domains.sdf.lib
An adaptive filter using the Least-Mean Square (LMS) algorithm, also known as the stochastic gradient algorithm.
LMSAdaptive(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.LMSAdaptive
Construct an actor with the given container and name.
load(String, String, String[]) - Static method in class org.kepler.Kepler
This method provides a generic loader.
load(String, String[]) - Static method in class org.kepler.Kepler
Load classes and invoke "main" method.
load() - Static method in class org.kepler.loader.SystemPropertyLoader
 
load(String) - Method in class org.kepler.scriptengine.java.MemoryClassLoader
 
loadActorOrientedClass(String, VersionSpecification) - Method in interface org.ptolemy.classloading.ClassLoadingStrategy
Load an actor-oriented class, which is typically a .moml file.
loadActorOrientedClass(String, VersionSpecification) - Method in class org.ptolemy.classloading.osgi.OSGiClassLoadingStrategy
Load an actor-oriented class, which is typically a .moml file.
loadActorOrientedClass(String, VersionSpecification) - Method in class org.ptolemy.classloading.SimpleClassLoadingStrategy
Load an actor-oriented class, which is typically a .moml file.
loadAll() - Method in class org.kepler.scriptengine.java.MemoryClassLoader
 
loadClass(String, boolean) - Method in class org.kepler.scriptengine.java.MemoryClassLoader
 
loadConfiguration(Module, File) - Method in class org.kepler.configuration.CommonsConfigurationReader
load the configuration for a single file in a module
loadConfiguration(Module, File, Locale) - Method in class org.kepler.configuration.CommonsConfigurationReader
load the configuration for a single file in a module
loadConfiguration() - Method in class org.kepler.configuration.ConfigurationManager
deserialize the configuration
loadConfiguration(Module, File) - Method in interface org.kepler.configuration.ConfigurationReader
load a single configuration file from a module
loadConfiguration(Module, File, Locale) - Method in interface org.kepler.configuration.ConfigurationReader
load a single configuration file from a module for a given locale
loadConfigurations(Module) - Method in class org.kepler.configuration.CommonsConfigurationReader
load all configurations for a given module
loadConfigurations(Module, Locale) - Method in class org.kepler.configuration.CommonsConfigurationReader
load all configurations for a given module
loadConfigurations(Module) - Method in interface org.kepler.configuration.ConfigurationReader
load all configurations for a given module
loadConfigurations(Module, Locale) - Method in interface org.kepler.configuration.ConfigurationReader
load all configuration for a given module in a given locale
loadIconForClass(String, NamedObj) - Method in class org.kepler.gui.KeplerIconLoader
Load an icon for a class in a particular context.
loadIconForClass(String, NamedObj) - Method in interface ptolemy.moml.IconLoader
Load an icon for a class in a particular context.
loadIconForClass(String, NamedObj) - Method in class ptolemy.moml.test.TestIconLoader
Load an icon for a class in a particular context.
loadJarFiles() - Method in class org.kepler.objectmanager.classloader.JarClassLoader
This method will load classes in the jar files into jvm
loadJavaClass(String, VersionSpecification) - Method in interface org.ptolemy.classloading.ClassLoadingStrategy
Load a Java class.
loadJavaClass(String, VersionSpecification) - Method in class org.ptolemy.classloading.osgi.OSGiClassLoadingStrategy
Load a Java class.
loadJavaClass(String, VersionSpecification) - Method in class org.ptolemy.classloading.SimpleClassLoadingStrategy
Load a Java class.
loadLibrary(String) - Static method in class ptolemy.data.expr.UtilityFunctions
Load a library by first using the default platform dependent System.loadLibrary() method.
loadMappings(PtolemyModule) - Method in class ptolemy.actor.injection.Injector
Load the interface to implementation mappings into the injector.
LoadParametersAction - Class in org.kepler.gui
An action to load parameters from a file.
LoadParametersAction(TableauFrame) - Constructor for class org.kepler.gui.LoadParametersAction
 
loadQuery(DBQueryDef) - Method in class org.ecoinformatics.seek.querybuilder.QBApp
Loads the QueryDef object into the UI
loadRecordingTypes() - Method in class org.kepler.provenance.ProvenanceRecorder
Load the default recording types.
loadRecordingTypes(File) - Method in class org.kepler.provenance.ProvenanceRecorder
Load the recording types from a specific file.
loadSchemaIntoUI(DSSchemaIFace) - Method in class org.ecoinformatics.seek.querybuilder.QBApp
Sets a new Schema into the UI and recreates the UI for it
loadTagsFromTarget(boolean) - Method in class org.kepler.tagging.gui.ExistingTagsPanel
 
localClock - Variable in class ptolemy.actor.Director
The clock that keeps track of current time of the model.
LocalClock - Class in ptolemy.actor
A clock that keeps track of model time at a level of the model hierarchy and relates it to the time of the enclosing model, if there is one.
LocalClock(NamedObj, String) - Constructor for class ptolemy.actor.LocalClock
Construct an attribute with the given name contained by the specified entity.
localContainsTimeZoneID(String) - Static method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerPanel
 
LocalDelete - Class in org.kepler.ssh
Local file delete according to a regular expression.
LocalDelete() - Constructor for class org.kepler.ssh.LocalDelete
 
localDir - Variable in class org.srb.SGet
Where to fetch the files on the local drive.
localDirParameter - Variable in class org.srb.SGet
Where to fetch the files on the local drive.
LocalExec - Class in org.kepler.ssh
Local command execution.
LocalExec() - Constructor for class org.kepler.ssh.LocalExec
 
LocalFileCopier - Class in org.sdm.spa.actors.transport
Default class for copying files within the localhost.This class doesn't have have any specific implementation.
LocalFileCopier() - Constructor for class org.sdm.spa.actors.transport.LocalFileCopier
 
localFilePath - Variable in class org.geon.Scp
Local file path.
localPath - Variable in class org.geon.FTPClient
Local directory
LocalRemoteWorkflowMap - Class in org.kepler.workflowscheduler.gui
Represents a map between a local workflow and a remote copy of the workflow
LocalRemoteWorkflowMap(String, String, String, String, String) - Constructor for class org.kepler.workflowscheduler.gui.LocalRemoteWorkflowMap
Constructor
LocalRemoteWorkflowMappingController - Class in org.kepler.workflowscheduler.gui
Keper can schedule a local workflow.
LocalRemoteWorkflowMappingController() - Constructor for class org.kepler.workflowscheduler.gui.LocalRemoteWorkflowMappingController
 
LocalRepositoryManager - Class in org.kepler.objectmanager.cache
 
LocalRepositoryManager() - Constructor for class org.kepler.objectmanager.cache.LocalRepositoryManager
Empty Constructor.
LocalRepositoryManager.LocalRepository - Class in org.kepler.objectmanager.cache
A repository on the local disk.
Locatable - Interface in ptolemy.kernel.util
An interface for objects storing a location.
LocatableNodeController - Class in ptolemy.vergil.basic
This node controller provides interaction techniques for nodes that are locations.
LocatableNodeController(GraphController) - Constructor for class ptolemy.vergil.basic.LocatableNodeController
Create an instance associated with the specified graph controller.
LocatableNodeDragInteractor - Class in ptolemy.vergil.basic
An interaction role that drags nodes that have locatable objects as semantic objects.
LocatableNodeDragInteractor(LocatableNodeController) - Constructor for class ptolemy.vergil.basic.LocatableNodeDragInteractor
Create a new interactor contained within the given controller.
locateFigure(Object) - Method in class ptolemy.vergil.actor.ExternalIOPortController
Move the node's figure to the location specified in the node's semantic object, if that object is an instance of Locatable.
locateFigure(Object) - Method in class ptolemy.vergil.basic.LocatableNodeController
Move the node's figure to the location specified in the node's semantic object, if that object is an instance of Locatable.
LOCATION - Static variable in class org.ecoinformatics.seek.ecogrid.RegistrySearchDialog
 
location - Variable in class org.kepler.gis.actor.pylaski.GetPylaskiMeasurements
 
location - Variable in class org.ROADnet.OrbSensorDataSource
The location to be mapped
location - Variable in class org.sdm.spa.actors.piw.viz.TranscriptionFactorBindingSite
 
Location - Class in ptolemy.kernel.util
An attribute that represents the center location of a node in a schematic.
Location(Workspace) - Constructor for class ptolemy.kernel.util.Location
Construct an attribute in the specified workspace with an empty string as a name.
Location(NamedObj, String) - Constructor for class ptolemy.kernel.util.Location
Construct an attribute with the given container and name.
location_name - Variable in class org.ecoinformatics.seek.gis.grass.GrassExportActor
 
location_name - Variable in class org.ecoinformatics.seek.gis.grass.GrassImportActor
 
LocationAttribute - Class in ptolemy.actor.gui
This attribute stores the width and height of a graphical component.
LocationAttribute(NamedObj, String) - Constructor for class ptolemy.actor.gui.LocationAttribute
Construct an attribute with the given name contained by the specified entity.
LOCATIONCOL - Static variable in class org.ecoinformatics.seek.ecogrid.ServicesDisplayPanel
 
LocationParameter - Class in ptolemy.actor.parameters
A parameter that specifies the location of the center of its container.
LocationParameter(NamedObj, String) - Constructor for class ptolemy.actor.parameters.LocationParameter
Construct a parameter with the given name contained by the specified entity.
locationType - Variable in class org.kepler.gis.actor.pylaski.GetPylaskiMeasurements
 
LOCATIONXPATH - Static variable in class org.ecoinformatics.seek.ecogrid.RegistrySearchDialog
 
log - Static variable in class org.ecoinformatics.seek.datasource.eml.eml2.EML2MetadataSpecification
 
log - Static variable in class org.ecoinformatics.seek.ecogrid.EcogridPreferencesTab
 
log - Static variable in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
 
log - Static variable in class org.ecoinformatics.seek.ecogrid.EcogridWriter
 
log - Static variable in class org.ecoinformatics.seek.ecogrid.quicksearch.GetMetadataAction
 
log - Static variable in class org.ecoinformatics.seek.ecogrid.quicksearch.SearchQueryGenerator
 
log - Static variable in class org.ecoinformatics.seek.ecogrid.RegistrySearchDialog
 
log - Static variable in class org.ecoinformatics.seek.ecogrid.SearchRegistryAction
 
log - Static variable in class org.ecoinformatics.seek.ecogrid.ServicesDisplayPanel
 
log - Static variable in class org.ecoinformatics.seek.ecogrid.ServicesDisplayTableModel
 
log - Static variable in class org.ecoinformatics.seek.R.RExpression
 
log - Static variable in class org.ecoinformatics.seek.R.RExpression2
 
log - Static variable in class org.kepler.dataproxy.datasource.geon.GEONDatabaseResource
 
log - Static variable in class org.kepler.dataproxy.datasource.geon.GEONShpResource
 
log - Static variable in class org.kepler.dataproxy.metadata.ADN.ADNMetadataSpecification
 
log(String) - Method in class org.kepler.gui.SplashWindow
Update the status text and progress bar.
log - Static variable in class org.kepler.monitor.figure.BaseFigure
 
log - Static variable in class org.kepler.objectmanager.cache.WorkflowRunCacheObject
 
log - Static variable in class org.kepler.provenance.kar.UploadKarToRepositoryNoGUI
 
log - Static variable in class org.kepler.reporting.gui.ReportViewerPanel
 
log - Static variable in class org.kepler.reporting.rio.fop.ReportParser
 
log - Static variable in class org.kepler.reporting.rio.fop.ReportRenderer
 
log - Static variable in class org.kepler.reporting.rio.fop.ReportXMLReader
 
log - Static variable in class org.kepler.reporting.rio.ReportAssembler
 
log - Static variable in class org.kepler.reporting.rio.util.ProvenanceUtil
 
log - Static variable in class org.kepler.reporting.rio.util.TokenUtil
 
log - Static variable in class org.kepler.tagging.gui.CBItems
 
log - Static variable in class org.kepler.util.WorkflowRun
 
log(HttpServerRequest, User, int, long) - Method in class org.kepler.webview.server.WebViewServer
Log an http server request.
log(HttpServerRequest, User, int, long, long) - Method in class org.kepler.webview.server.WebViewServer
Log an http server request.
log(ServerWebSocket, String, String) - Method in class org.kepler.webview.server.WebViewServer
 
log(ServerWebSocket, String, String, Buffer) - Method in class org.kepler.webview.server.WebViewServer
 
log - Static variable in class ptolemy.actor.lib.r.RExpression
The log.
log - Static variable in class ptolemy.actor.lib.r.RExpression2
The log.
log(int) - Static method in class ptolemy.actor.util.CalendarQueue
Return the power of two belonging to the least integer power of two larger than or equal to the specified integer.
log(Level, String) - Method in class ptolemy.kernel.util.LoggerListener
Send the message to the log.
log() - Method in class ptolemy.math.Complex
Return the natural logarithm of this complex number.
log(Complex) - Static method in class ptolemy.math.Complex
Return the natural logarithm of the specified complex number.
log10(double) - Static method in class ptolemy.math.ExtendedMath
Return the base-10 logarithm of the argument.
log2(double) - Static method in class ptolemy.math.ExtendedMath
Return the base-2 logarithm of the argument.
log2Length - Variable in class ptolemy.actor.lib.comm.HadamardCode
Log base 2 of the length of the code.
log_tokenProdRate - Variable in class org.kepler.actor.job.JobStatus
 
log_tokenProductionRate - Variable in class org.kepler.actor.job.JobSubmitter
The rate parameter for the log port.
logAspectRatio - Variable in class ptolemy.vergil.basic.layout.AbstractLayoutConfiguration
The aspect ratio for placement of connected components (logarithmic).
logfile - Variable in class org.kepler.actor.Logger
The log file.
logfile - Variable in class org.kepler.actor.MappedLogger
The log file.
LogFile - Variable in class org.sdm.spa.ProcessFileRT
 
logFileName - Variable in class ptolemy.actor.lib.CatchExceptionAttribute
The file, if any, to log messages to.
LogFormat - Variable in class org.sdm.spa.ProcessFileRT
 
Logger - Class in org.kepler.actor
Log information directed into a file.
Logger(CompositeEntity, String) - Constructor for class org.kepler.actor.Logger
Construct an actor with the given container and name.
LoggerListener - Class in ptolemy.kernel.util
A debug listener that sends messages using Java's Logger API.
LoggerListener(String, File, Level) - Constructor for class ptolemy.kernel.util.LoggerListener
Create a logger.
LoggerListener(String, File) - Constructor for class ptolemy.kernel.util.LoggerListener
Create a logger.
LoggerListener(String) - Constructor for class ptolemy.kernel.util.LoggerListener
Create a logger.
loggingDirectory - Variable in class ptolemy.actor.lib.Dictionary
If given, a log file will be written to the specified directory.
LogHeader - Variable in class org.sdm.spa.ProcessFileRT
 
logic - Variable in class ptolemy.actor.lib.logic.LogicGate
The function to compute.
logicalAnd() - Method in class ptolemy.data.expr.PtParser
 
logicalEquals() - Method in class ptolemy.data.expr.PtParser
 
LogicalNot - Class in ptolemy.actor.lib.logic
This actor implements a logical NOT operator.
LogicalNot(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.logic.LogicalNot
Construct an actor in the specified container with the specified name.
logicalOr() - Method in class ptolemy.data.expr.PtParser
 
logicalPath - Variable in class org.srb.SGetPhysicalLocation
Logical path to SRB file
logicalRightShift(int) - Method in class ptolemy.data.IntToken
Returns a token representing the result of shifting the bits of this token towards the least significant bit, filling the most significant bits with zeros.
logicalRightShift(int) - Method in class ptolemy.data.LongToken
Returns a token representing the result of shifting the bits of this token towards the least significant bit, filling the most significant bits with zeros.
logicalRightShift(int) - Method in class ptolemy.data.ScalarToken
Returns a token representing the result of shifting the bits of this token towards the least significant bit, filling the most significant bits with zeros.
logicalRightShift(int) - Method in class ptolemy.data.ShortToken
Returns a token representing the result of shifting the bits of this token towards the least significant bit, filling the most significant bits with zeros.
logicalRightShift(int) - Method in class ptolemy.data.UnsignedByteToken
Returns a token representing the result of shifting the bits of this token towards the least significant bit, filling the most significant bits with zeros.
LogicFunction - Class in ptolemy.actor.lib.logic
Deprecated.
Use LogicGate instead.
LogicFunction(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.logic.LogicFunction
Deprecated.
Construct an actor with the given container and name.
LogicGate - Class in ptolemy.actor.lib.logic
Produce an output token on each firing with a value that is equal to the specified logic operator of the input(s).
LogicGate(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.logic.LogicGate
Construct an actor with the given container and name.
LoginHandler - Class in org.kepler.webview.server.handler
Handler for logins.
LoginHandler(WebViewServer) - Constructor for class org.kepler.webview.server.handler.LoginHandler
 
loginRegEcoGrid(String, String) - Method in class org.kepler.objectmanager.repository.EcogridRepository
login to the registry
logPort - Variable in class org.kepler.actor.job.GenericJobLauncher
Logging information of job status query.
logPort - Variable in class org.kepler.actor.job.GenericJobReconnect
Logging information of job status query.
logport - Variable in class org.kepler.actor.job.JobStatus
Logging information of job status query.
logport - Variable in class org.kepler.actor.job.JobSubmitter
Logging information of job submission.
LONG - Static variable in class org.ecoinformatics.seek.dataquery.DBTablesGenerator
 
LONG - Static variable in class org.kepler.objectmanager.data.DataType
 
LONG - Static variable in class ptolemy.data.type.BaseType
The long integer data type.
LONG_MATRIX - Static variable in class ptolemy.data.type.BaseType
The long integer matrix data type.
LongArrayMath - Class in ptolemy.math
This class provides a library for mathematical operations on long arrays.
LongArrayMath() - Constructor for class ptolemy.math.LongArrayMath
 
LongBinaryOperation - Interface in ptolemy.math
A operation taking two operands of type long, and producing a value of type long.
longitudeFirst - Variable in class org.kepler.gis.actor.CRSActor
If true, longitude is first in axis.
longitudeZone - Variable in class org.kepler.gis.actor.proj.GetUTMZone
The UTM zone for the longitude.
longMatrix() - Method in class ptolemy.data.IntMatrixToken
Return the content of this token as a 2-D long matrix.
longMatrix() - Method in class ptolemy.data.LongMatrixToken
Return the content in the token as a 2-D long matrix.
longMatrix() - Method in class ptolemy.data.MatrixToken
Return the content of this matrix as a 2-D long matrix.
LongMatrixMath - Class in ptolemy.math
This class provides a library for mathematical operations on matrices of longs.
LongMatrixToken - Class in ptolemy.data
A token that contains a 2-D long matrix.
LongMatrixToken() - Constructor for class ptolemy.data.LongMatrixToken
Construct an LongMatrixToken with a one by one matrix.
LongMatrixToken(long[], int, int) - Constructor for class ptolemy.data.LongMatrixToken
Construct a LongMatrixToken with the specified 1-D matrix.
LongMatrixToken(long[], int, int, int) - Constructor for class ptolemy.data.LongMatrixToken
Construct a LongMatrixToken with the specified 1-D matrix.
LongMatrixToken(long[][]) - Constructor for class ptolemy.data.LongMatrixToken
Construct a LongMatrixToken with the specified 2-D matrix.
LongMatrixToken(long[][], int) - Constructor for class ptolemy.data.LongMatrixToken
Construct a LongMatrixToken with the specified 2-D matrix.
LongMatrixToken(String) - Constructor for class ptolemy.data.LongMatrixToken
Construct a LongMatrixToken from the specified string.
LongMatrixToken(Token[], int, int) - Constructor for class ptolemy.data.LongMatrixToken
Construct an LongMatrixToken from the specified array of tokens.
LongMatrixType() - Constructor for class ptolemy.data.type.MatrixType.LongMatrixType
 
longMax - Variable in class org.geon.Interpolate
Maximum longitude
longMin - Variable in class org.geon.Interpolate
Minimum longitude
longport - Variable in class org.resurgence.actor.StringToLong
The output port, which has type int.
LongToDate - Class in ptolemy.actor.lib.conversions
Convert a long to a date.
LongToDate(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.conversions.LongToDate
Construct an actor with the given container and name.
LongToDouble - Class in ptolemy.actor.lib.conversions
This actor converts a LongToken into a DoubleToken.
LongToDouble(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.conversions.LongToDouble
Construct an actor with the given container and name.
LongToken - Class in ptolemy.data
A token that contains a signed 64-bit long integer.
LongToken() - Constructor for class ptolemy.data.LongToken
Construct a token with long integer 0.
LongToken(long) - Constructor for class ptolemy.data.LongToken
Construct a token with the specified value.
LongToken(String) - Constructor for class ptolemy.data.LongToken
Construct a token from the given String.
LongUnaryOperation - Interface in ptolemy.math
A operation taking one argument of type long, and producing a value of type long.
longValue() - Method in class ptolemy.data.IntToken
Return the value in the token as a long.
longValue() - Method in class ptolemy.data.LongToken
Return the value in the token as a long.
longValue() - Method in class ptolemy.data.ScalarToken
Return the value of this token as a long integer.
longValue() - Method in class ptolemy.data.ShortToken
Return the value in the token as a long.
longValue() - Method in class ptolemy.data.UnsignedByteToken
Return the value in the token as a long.
LookInside(NamedObj, String) - Constructor for class ptolemy.vergil.actor.lib.VisualModelReference.LookInside
Construct a VisualModelReference$LookInside object.
lookInsideAction(FigureAction, NamedObj) - Method in interface ptolemy.vergil.actor.ActorInteractionAddon
The action to be taken when looking inside an actor.
LookInsideAction - Class in ptolemy.vergil.basic
The action to open a composite actor model, an ontology, or a MoMLModelAttribute.
LookInsideAction(String) - Constructor for class ptolemy.vergil.basic.LookInsideAction
Create a new LookInsideAction object with the given string as its menu action label.
LookInsideAction() - Constructor for class ptolemy.vergil.modal.StateController.LookInsideAction
 
lookupClassAsResource(String) - Static method in class ptolemy.util.ClassUtilities
Given a dot separated classname, return the jar file or directory where the class can be found.
lookupIntervalUnit(String) - Static method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerPanel
Look for couterpart of interval unit for a specified unit label
lookupIntervalUnitLabel(String) - Static method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerPanel
Look for counterpart of interval unit label for a specified unit
lookupReportInstance(Integer) - Method in class org.kepler.reporting.gui.ReportViewerPanel
 
lookupReportLayout(Integer) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
 
LookupTable - Class in ptolemy.actor.lib
Output to the output port the value in the array of tokens specified by the table parameter at the index specified by the input port.
LookupTable(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.LookupTable
Construct an actor with the given container and name.
lookupTypeFromName(String) - Method in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreSchema
 
lookupValue(String) - Method in class org.kepler.reporting.rio.ReportInstance
Look up a _single_ token value for the given item name
lookupWorkflowRun(KeplerLSID, Queryable) - Static method in class org.kepler.util.WorkflowRunUtil
 
LoopTest2 - Class in ptolemy.actor.lib.test
Name: LoopTest.java Purpose: The purpose of this actor is prove that output from another actor can be input to this actor.
LoopTest2(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.test.LoopTest2
 
lostOwnership(Clipboard, Transferable) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Do nothing.
LOW_QUALITY - Static variable in class org.kepler.monitor.MonitoredStatus.State
 
LOWER - Static variable in interface ptolemy.graph.CPO
One of the return values of compare, indicating that the first element is lower than the second.
lowerBound - Variable in class org.kepler.date.RandomDate
The lower bound of the date.
lowerBound - Variable in class org.kepler.spark.mllib.SparkSQLQuery
lower bound for partitioning
lowerBound - Variable in class ptolemy.actor.lib.Accumulator
The lower bound.
lowerBound - Variable in class ptolemy.actor.lib.Uniform
The lower bound.
lowerColumnNames - Variable in class org.geon.DatabaseQuery
If true, column names are converted to lower-case.
LPAREN - Static variable in interface ptolemy.moml.unit.UParserConstants
RegularExpression Id.
LSHR - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
LSID - Static variable in class org.kepler.kar.KAREntry
Name object for lsid manifest attribute used for globally identifying KAREntries as unique.
LSID - Static variable in class org.kepler.kar.KARFile
Name object for lsid manifest attribute used for globally identifying KAREntries as unique.
lsid - Variable in class org.kepler.reporting.roml.ReportLayout
 
LSID_DEPENDENCIES - Static variable in class org.kepler.kar.KAREntry
Name object for lsid_dependencies manifest attribute used for identifying other KAREntries that this entry depends on.
lsidAuthority - Variable in class org.kepler.objectmanager.repository.Repository
 
LSIDGenerator - Class in org.kepler.objectmanager.lsid
This class maintains a list of LSIDs in the system and can generate new LSIDs that are unique to the local system.
lsidPath - Variable in class org.kepler.objectmanager.repository.Repository
 
LSIDViewer - Class in org.kepler.gui.lsid
A popup dialog box that shows the current LSID and LSID Referral List for the NamedObj that is passed to the initialize(NamedObj) method.
LSIDViewer() - Constructor for class org.kepler.gui.lsid.LSIDViewer
 
LSIDViewer(String) - Constructor for class org.kepler.gui.lsid.LSIDViewer
 
LSIDViewerAction - Class in org.kepler.gui.lsid
An action for viewing the LSID and LSID Referral List (aka Derived From list) in a popup dialog box.
LSIDViewerAction(TableauFrame) - Constructor for class org.kepler.gui.lsid.LSIDViewerAction
 
LT - Static variable in class org.json.XML
The Character '<'.
LT - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
LT - Static variable in interface ptolemy.moml.unit.UParserConstants
RegularExpression Id.
LT_INX - Static variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIStd
 
LTE - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.

M

MAC_OSX - Static variable in class org.kepler.gui.StaticGUIResources
 
mAceptableActions - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableOverviewTable
 
mAceptableActions - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIBase
 
mAceptableActions - Variable in class org.ecoinformatics.seek.querybuilder.DBTableList
 
mAceptableActions - Variable in class org.ecoinformatics.seek.querybuilder.DBWhereList
 
macOSLookAndFeel() - Static method in class ptolemy.gui.PtGUIUtilities
Return true if we are running under MacOS look and feel or if the ptolemy.ptII.MacOS property is defined.
macOSLookAndFeel() - Static method in class ptolemy.vergil.kernel.VergilUtilities
MacOSXAdapter - Class in ptolemy.gui
Support for Mac OS X specific features such as key bindings.
mAddAndOperBtn - Variable in class org.ecoinformatics.seek.querybuilder.DBWherePanel
 
mAddBtn - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneAdvanced
 
mAddBtn - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneIntermediate
 
mAddCondBtn - Variable in class org.ecoinformatics.seek.querybuilder.DBWherePanel
 
mAddOROperBtn - Variable in class org.ecoinformatics.seek.querybuilder.DBWherePanel
 
MAGENTA - Static variable in interface org.kepler.dataproxy.datasource.DataSourceInterface
 
magic - Variable in class ptolemy.media.Audio
The file type identifier, 0x2E736E64 or '.snd' in ASCII.
magnitude - Variable in class ptolemy.actor.lib.conversions.CartesianToPolar
The magnitude component of the output pair, which has type DoubleToken.
magnitude - Variable in class ptolemy.actor.lib.conversions.ComplexToPolar
The output port for the magnitude component, which has type DoubleToken.
magnitude - Variable in class ptolemy.actor.lib.conversions.PolarToCartesian
The input port for the magnitude component, which has type DoubleToken.
magnitude - Variable in class ptolemy.actor.lib.conversions.PolarToComplex
The input port for the magnitude component, which has type DoubleToken.
magnitude() - Method in class ptolemy.math.Complex
Return the magnitude or absolute value of this complex number.
magnitude(Complex) - Static method in class ptolemy.math.Complex
Return the magnitude or absolute value of the given complex number.
magnitude(Complex[]) - Static method in class ptolemy.math.ComplexArrayMath
Return a new array of doubles containing the magnitudes of the elements of the specified array of complex numbers.
magnitudeSquared() - Method in class ptolemy.math.Complex
Return the square of the magnitude of this complex number.
magnitudeSquared(Complex) - Static method in class ptolemy.math.Complex
Return the square of the magnitude of this complex number.
Mailbox - Class in ptolemy.actor
A token holder with capacity one.
Mailbox() - Constructor for class ptolemy.actor.Mailbox
Construct an empty Mailbox with no container.
Mailbox(IOPort) - Constructor for class ptolemy.actor.Mailbox
Construct an empty Mailbox with the specified container.
MailboxBoundaryReceiver - Class in ptolemy.actor.process
A process receiver that stores tokens via a mailbox and can be used by composite actors.
MailboxBoundaryReceiver() - Constructor for class ptolemy.actor.process.MailboxBoundaryReceiver
Construct an empty MailboxBoundaryReceiver with no container.
MailboxBoundaryReceiver(IOPort) - Constructor for class ptolemy.actor.process.MailboxBoundaryReceiver
Construct an empty MailboxBoundaryReceiver with the specified container.
main(String[]) - Static method in class com.microstar.xml.demo.DtdDemo
Entry point for an application (applets enter through XmlApp.init()).
main(String[]) - Static method in class com.microstar.xml.demo.EventDemo
Entry point for an application.
main(String[]) - Static method in class com.microstar.xml.demo.ReaderDemo
 
main(String[]) - Static method in class com.microstar.xml.demo.StreamDemo
 
main(String[]) - Static method in class com.microstar.xml.demo.TimerDemo
Entry point for an application.
main(String[]) - Static method in class com.numericsolutions.geomodeltools.invdist_power_isosearch2d
 
main(String[]) - Static method in class org.ecoinformatics.seek.ecogrid.RegistrySearchDialog
 
main(String[]) - Static method in class org.ecoinformatics.seek.ecogrid.SearchRegistryResultFrame
 
main(String[]) - Static method in class org.ecoinformatics.seek.ecogrid.SemRegIndex
The main program for the SemRegIndex class
main(String[]) - Static method in class org.ecoinformatics.seek.ecogrid.ServicesDisplayPanel
 
main(String[]) - Static method in class org.ecoinformatics.seek.gis.java_gis.ConvexHull
 
main(String[]) - Static method in class org.ecoinformatics.seek.gis.java_gis.Grid
 
main(String[]) - Static method in class org.ecoinformatics.seek.querybuilder.QBApp
QBApp Main.
main(String[]) - Static method in class org.ecoinformatics.seek.sms.AnnotationEngine
The main program for the AnnotationEngine class for testing: prints out the annotations.
main(String[]) - Static method in class org.ecoinformatics.seek.sms.KeplerLocalLSIDService
The main program for the KeplerLocalLSIDService class
main(String[]) - Static method in class org.ecoinformatics.seek.sms.OntologyCatalog
The main program for the OntologyCatalog class
main(String[]) - Static method in class org.geon.LidarUtilities
 
main(String[]) - Static method in class org.geon.LidarWorkflowExecute
 
main(String[]) - Static method in class org.geon.TernaryDiagram
 
main(String[]) - Static method in class org.geon.WorkflowExecute
Deprecated.
 
main(String[]) - Static method in class org.json.Test
Entry point.
main(String[]) - Static method in class org.kepler.bio.util.BlastTabularResult
 
main(String[]) - Static method in class org.kepler.CommandLineArgs
 
main(String[]) - Static method in class org.kepler.configuration.ConfigurationTest
 
main(String[]) - Static method in class org.kepler.ExecutionEngine
command line interface to this class
main(String[]) - Static method in class org.kepler.gis.display.ENMPCPFrame
The main program for the ENMPCPFrame class
main(String[]) - Static method in class org.kepler.gis.display.ENMPCPVisualizer
The main program for the ENMPCPVisualizer class
main(String[]) - Static method in class org.kepler.gis.display.JumpFrame
The main program for the JumpFrame class
main(String[]) - Static method in class org.kepler.gis.display.JumpGMLDisplayer
The main program for the JumpGMLDisplayer class
main(String[]) - Static method in class org.kepler.gis.display.JumpSHPDisplayer
The main program for the JumpSHPDisplayer class
main(String[]) - Static method in class org.kepler.gis.util.VectorUtilities
For debugging, ignore.
main(String[]) - Static method in class org.kepler.gui.ActorDialog
main for testing
main(String[]) - Static method in class org.kepler.gui.memory.JvmMemoryPanel
 
main(String[]) - Static method in class org.kepler.gui.WelcomeScreen
The main program for the WelcomeScreen class
main(String[]) - Static method in class org.kepler.io.test.TestDirectoryListingLocal
 
main(String[]) - Static method in class org.kepler.io.test.TestDirectoryListingRemote
 
main(String[]) - Static method in class org.kepler.kar.KarCombiner
 
main(String[]) - Static method in class org.kepler.Kepler
 
main(String[]) - Static method in class org.kepler.KeplerConfigurationApplication
main method
main(String[]) - Static method in class org.kepler.loader.SystemPropertyLoader
 
main(String[]) - Static method in class org.kepler.loader.util.FindMissingActors
Find files whose classes are not in the actor tree.
main(String[]) - Static method in class org.kepler.loader.util.ParseWorkflow
Load workflows and exit.
main(String[]) - Static method in class org.kepler.loader.util.UpdateActorTreeFiles
Update the KAR XMLs for modules.
main(String[]) - Static method in class org.kepler.modulemanager.gui.ModuleManagerPane
Parse command-line arguments and perform the action.
main(String[]) - Static method in class org.kepler.modulemanager.gui.patch.UpgradeDialogPanel
 
main(String[]) - Static method in class org.kepler.objectmanager.repository.EcogridRepositoryBootstrap
main method to be called from ant.
main(String[]) - Static method in class org.kepler.plotting.PlotEditor
 
main(String[]) - Static method in class org.kepler.provenance.manager.ProvenanceManager
Program entry point.
main(String[]) - Static method in class org.kepler.provenance.prov.ProvQuery
For testing.
main(String[]) - Static method in class org.kepler.provenance.sql.Upgrade
Upgrade the database.
main(String[]) - Static method in class org.kepler.reporting.rio.fop.ReportRenderer
Main method.
main(String[]) - Static method in class org.kepler.reporting.rio.test.ReportTest
 
main(String[]) - Static method in class org.kepler.reporting.rio.util.ProvenanceUtil
 
main(String[]) - Static method in class org.kepler.reporting.rio.util.SerializeDeepCopy
 
main(String[]) - Static method in class org.kepler.reporting.rio.util.TokenUtil
 
main(String[]) - Static method in class org.kepler.sms.actors.MergeEditorDialog
 
main(String[]) - Static method in class org.kepler.sms.actors.SimpleMergeMapping
For testing
main(String[]) - Static method in class org.kepler.sms.gui.SemanticSearchDialog
Main method for testing the dialog.
main(String[]) - Static method in class org.kepler.sms.gui.SemanticTypeBrowserDialog
 
main(String[]) - Static method in class org.kepler.sms.gui.SemanticTypeBrowserPane
for testing
main(String[]) - Static method in class org.kepler.sms.gui.SemanticTypeEditor
Main method for testing the dialog.
main(String[]) - Static method in class org.kepler.sms.gui.WorkflowTypeCheckerDialog
Main method for testing the dialog.
main(String[]) - Static method in class org.kepler.sms.OntologyCatalog
The main program for the OntologyCatalog class
main(String[]) - Static method in class org.kepler.sms.SemanticTypeManager
 
main(String[]) - Static method in class org.kepler.spark.examples.JavaWordCount
 
main(String[]) - Static method in class org.kepler.ssh.TestCopyTo
 
main(String[]) - Static method in class org.kepler.ssh.TestDelete
 
main(String[]) - Static method in class org.kepler.ssh.TestExec
 
main(String[]) - Static method in class org.kepler.ssh.TestExecMulti
 
main(String[]) - Static method in class org.kepler.ssh.TestExecThirdparty
 
main(String[]) - Static method in class org.kepler.ssh.TestExecThirdpartyLocal
 
main(String[]) - Static method in class org.kepler.tagging.gui.AutoCompleteComboBox
 
main(String[]) - Static method in class org.kepler.tagging.gui.DeletableColorIconLabel
For testing
main(String[]) - Static method in class org.kepler.tagging.gui.NonComboBoxTest
 
main(String[]) - Static method in class org.kepler.tagging.gui.TagManagerUITester
 
main(String[]) - Static method in class org.kepler.tagging.Tagging
Just for testing ... the findNamedObjects throws exceptions due to the object manager
main(String[]) - Static method in class org.kepler.util.DocUtil
main
main(String[]) - Static method in class org.kepler.util.sql.CleanupHSQL1
 
main(String[]) - Static method in class org.mlc.swing.example.CustomerPanel
Run the CustomerPanel example.
main(String[]) - Static method in class org.mlc.swing.example.ExamplePanel
Run the CustomerPanel example.
main(String[]) - Static method in class org.mlc.swing.layout.ComponentDef
 
main(String[]) - Static method in class org.mlc.swing.layout.ContainerLayout
 
main(String[]) - Static method in class org.mlc.swing.layout.LayoutConstraintsManager
 
main(String[]) - Static method in class org.mlc.swing.layout.LayoutFrame
 
main(String[]) - Static method in class org.mlc.swing.layout.NewComponentDialog
Unit testing.
main(String[]) - Static method in class org.sdm.spa.actors.piw.viz.VizApplication
Main function
main(String[]) - Static method in class org.sdm.spa.gui.DoubleShellTextAreaPanel
 
main(String[]) - Static method in class org.sdm.spa.gui.XMLUIP
 
main(String[]) - Static method in class org.sdm.spa.util.ActorInspector
 
main(String[]) - Static method in class ptolemy.actor.gui.BrowserLauncher
Launch the browser on the first argument.
main(String[]) - Static method in class ptolemy.actor.gui.CheckModelSize
Check the size, zoom and location of the models named by the args.
main(String[]) - Static method in class ptolemy.actor.gui.CompositeActorApplication
Create a new application with the specified command-line arguments.
main(String[]) - Static method in class ptolemy.actor.gui.CompositeActorSimpleApplication
Create a new application with the specified command-line arguments.
main(String[]) - Static method in class ptolemy.actor.gui.ConfigurationApplication
Create a new instance of this application, passing it the command-line arguments.
main(String[]) - Static method in class ptolemy.actor.gui.HTMLAbout
Generate a file that contains urls of models.
main(String[]) - Static method in class ptolemy.actor.gui.jnlp.BCVTBApplication
Main method that sets user.dir as necessary and calls MenuApplication.main().
main(String[]) - Static method in class ptolemy.actor.gui.jnlp.CapeCodeApplication
Main method that sets user.dir as necessary and calls MenuApplication.main().
main(String[]) - Static method in class ptolemy.actor.gui.jnlp.CyPhySimApplication
Main method that sets user.dir as necessary and calls MenuApplication.main().
main(String[]) - Static method in class ptolemy.actor.gui.jnlp.DSPApplication
Main method that sets user.dir as necessary and calls MenuApplication.main().
main(String[]) - Static method in class ptolemy.actor.gui.jnlp.FullApplication
Main method that sets user.dir as necessary and calls MenuApplication.main().
main(String[]) - Static method in class ptolemy.actor.gui.jnlp.HyVisualApplication
Main method that sets user.dir as necessary and calls MenuApplication.main().
main(String[]) - Static method in class ptolemy.actor.gui.jnlp.MenuApplication
Main method that sets user.dir as necessary.
main(String[]) - Static method in class ptolemy.actor.gui.jnlp.PtinyApplication
Main method that sets user.dir as necessary and calls MenuApplication.main().
main(String[]) - Static method in class ptolemy.actor.gui.jnlp.PtinyKeplerApplication
Main method that sets user.dir as necessary and calls MenuApplication.main().
main(String[]) - Static method in class ptolemy.actor.gui.jnlp.PtinySandboxApplication
Main method that sets user.dir as necessary and calls MenuApplication.main().
main(String[]) - Static method in class ptolemy.actor.gui.jnlp.SpaceApplication
Main method that sets user.dir as necessary and calls MenuApplication.main().
main(String[]) - Static method in class ptolemy.actor.gui.jnlp.VisualSenseApplication
Main method that sets user.dir as necessary and calls MenuApplication.main().
main(String[]) - Static method in class ptolemy.actor.gui.MoMLSimpleStatisticalApplication
Create an instance of a single model and run it.
main(String[]) - Static method in class ptolemy.actor.gui.PtExecuteApplication
Create a new instance of this application, passing it the command-line arguments.
main(String[]) - Static method in class ptolemy.actor.gui.PtolemyApplication
Create a new instance of this application, passing it the command-line arguments.
main(String[]) - Static method in class ptolemy.actor.gui.test.junit.HTMLAboutJUnitTest
Test the HTMLAbout To run, use: $PTII/bin/ptinvoke ptolemy.actor.gui.test.junit.HTMLAboutJUnitTest We use ptinvoke so that the classpath is set to include all the packages used by Ptolemy II.
main(String[]) - Static method in class ptolemy.actor.gui.test.Rerun
Create an instance of a single model and run it.
main(String[]) - Static method in class ptolemy.actor.lib.hoc.test.IterateOverArrayCloneTest
Check the clone(Workspace) method of the IterateOverArray class.
main(String[]) - Static method in class ptolemy.actor.lib.test.ReturnNonZero
 
main(String[]) - Static method in class ptolemy.actor.parameters.test.CloneTest
 
main(String[]) - Static method in class ptolemy.actor.test.ManagerLeak
 
main(String[]) - Static method in class ptolemy.actor.test.TestGraphReader
Convert a MoML file that contains a Ptolemy II specification into a weighted graph representation, and display information about the weighted graph.
main(String[]) - Static method in class ptolemy.component.test.MCApplication
Build the model.
main(String[]) - Static method in class ptolemy.configs.test.ValidatingXMLParser
Parse an XML parser using a validating parser.
main(String[]) - Static method in class ptolemy.data.type.test.TestTypeLattice
Create many threads and call bottom on the basic TypeLattice.
main(String[]) - Static method in class ptolemy.domains.de.lib.test.Time
 
main(String[]) - Static method in class ptolemy.domains.modal.kernel.test.AlternatingSimulation
Pass the command line arguments to the constructor.
main(String[]) - Static method in class ptolemy.domains.modal.kernel.test.CombineInternalTransitions
Pass the first command line argument to the constructor.
main(String[]) - Static method in class ptolemy.domains.modal.kernel.test.Compose
Pass the command line arguments to the constructor.
main(String[]) - Static method in class ptolemy.domains.modal.kernel.test.DeadlockStates
Pass the command line argument to the constructor.
main(String[]) - Static method in class ptolemy.domains.modal.kernel.test.GetInfo
Pass the command line arguments to the constructor.
main(String[]) - Static method in class ptolemy.domains.modal.kernel.test.Project
Pass the command line arguments to the constructor.
main(String[]) - Static method in class ptolemy.domains.sdf.lib.test.Time
 
main(String[]) - Static method in class ptolemy.gui.demo.FileChooserQuery
Create a FileChooserQuery and configure it.
main(String[]) - Static method in class ptolemy.gui.JTextAreaExec
Main method used for testing.
main(String[]) - Static method in class ptolemy.gui.ShellTextArea
Main method used for testing.
main(String[]) - Static method in class ptolemy.gui.UserDialog
Main method used for testing.
main(String[]) - Static method in class ptolemy.kernel.test.ComponentEntityTimeTest
 
main(String[]) - Static method in class ptolemy.kernel.test.ExampleSystem
Create an Example System, then print it out.
main(String[]) - Static method in class ptolemy.kernel.test.junit.ExampleSystemJUnitTest
Run the test that creates the example system.
main(String[]) - Static method in class ptolemy.kernel.test.TestSerializable
Create an Example System, then print it out.
main(String[]) - Static method in class ptolemy.kernel.util.test.TestWorkspace
 
main(String[]) - Static method in class ptolemy.kernel.util.test.TestWorkspace2
 
main(String[]) - Static method in class ptolemy.kernel.util.test.TestWorkspace6
 
main(String[]) - Static method in class ptolemy.matlab.test.TestEngine
Invoke the Matlab engine and run a few tests.
main(String[]) - Static method in class ptolemy.media.javasound.demo.LiveSines.LiveSines
Play a simple harmonic signal.
main(String[]) - Static method in class ptolemy.media.javasound.demo.ReaderProcessWriter.ReaderProcessWriter
Read samples from a sound file, process the data using a soft clipping algorithm and write the results.
main(String[]) - Static method in class ptolemy.media.javasound.demo.Sines.Sines
Synthesize and play a simple harmonic signal using additive synthesis.
main(String[]) - Static method in class ptolemy.media.javasound.demo.SoftClip.SoftClip
Perform real-time capture, processing and playback of audio data.
main(String[]) - Static method in class ptolemy.moml.ConvertToLazy
Create an instance of a model and convert it.
main(String[]) - Static method in class ptolemy.moml.filter.ActorIndex
Generate index documentation.
main(String[]) - Static method in class ptolemy.moml.filter.ChangeFixedWidth1ToAuto
Main function.
main(String[]) - Static method in class ptolemy.moml.filter.RemoveGraphicalClassesApplication
Read in a MoML file, remove graphical classes and write the results to standard out.
main(String[]) - Static method in class ptolemy.moml.filter.RemoveNonPtinyClasses
Read in a MoML file, remove graphical classes and write the results to standard out.
main(String[]) - Static method in class ptolemy.moml.MoMLCommandLineApplication
Create an instance of a single model and run it.
main(String[]) - Static method in class ptolemy.moml.MoMLSimpleApplication
Create an instance of each model file named in the arguments and run it.
main(String[]) - Static method in class ptolemy.moml.test.MoMLParserLeak
Attempt to leak code by parsing MoML that looks for a class that does not exist.
main(String[]) - Static method in class ptolemy.moml.test.UnloadModelTest
Load a model and then unload it.
main(String[]) - Static method in class ptolemy.plot.compat.PxgraphApplication
Create a new plot window and map it to the screen.
main(String[]) - Static method in class ptolemy.plot.demo.PlotLiveDemo
Run the demo as an application.
main(String[]) - Static method in class ptolemy.plot.demo.TwoPlotExample
Run the demonstration a standalone java application.
main(String[]) - Static method in class ptolemy.plot.PlotApplication
Create a new plot window and map it to the screen.
main(String[]) - Static method in class ptolemy.plot.plotml.EditablePlotMLApplication
Create a new plot window and map it to the screen.
main(String[]) - Static method in class ptolemy.plot.plotml.HistogramMLApplication
Create a new plot window and map it to the screen.
main(String[]) - Static method in class ptolemy.plot.plotml.PlotMLApplication
Create a new plot window and map it to the screen.
main(String[]) - Static method in class ptolemy.util.Diff
Print the difference between two files.
main(String[]) - Static method in class ptolemy.util.FileUtilities
Extract the contents of a jar file.
main(String[]) - Static method in class ptolemy.util.XSLTUtilities
Apply XSL transforms to an input file and generate an output file.
main(String[]) - Static method in class ptolemy.vergil.actor.FindPackages
Print out any packages found under the directory named by the first argument.
main(String[]) - Static method in class ptolemy.vergil.basic.export.ExportModel
Export a model as an image.
main(String[]) - Static method in class ptolemy.vergil.basic.export.html.test.junit.ExportToWebJUnitTest
Test the ExportToWeb facility.
main(String[]) - Static method in class ptolemy.vergil.basic.layout.kieler.test.junit.KielerJUnitTest
Test the Kieler layout facility.
main(String[]) - Static method in class ptolemy.vergil.basic.test.junit.ExportImageJUnitTest
Test the ExportImage facility.
main(String[]) - Static method in class ptolemy.vergil.tree.TreeEditor
Create an instance of this class to display the abstract syntax tree for the specified file.
main(String[]) - Static method in class ptolemy.vergil.VergilApplication
Create a new instance of this application, passing it the command-line arguments.
mainPrompt - Variable in class org.sdm.spa.gui.DoubleShellTextAreaPanel
Main prompt.
mainPrompt - Variable in class ptolemy.gui.ShellTextArea
Main prompt.
majorCurrentVersion() - Static method in class ptolemy.kernel.attributes.VersionAttribute
Return the major version, which consists of the first two tuples.
majorTickSpacing - Variable in class ptolemy.actor.lib.gui.SliderSource
The major tick spacing of the slider.
makeAttributeType(String, String) - Method in class com.microstar.xml.demo.DtdDemo
Generate the attribute type as a normalised string.
makeAttributeValue(String, String) - Method in class com.microstar.xml.demo.DtdDemo
Generate a full attribute default value.
makeButton(JPanel, String, GridBagLayout, GridBagConstraints) - Method in class org.ecoinformatics.seek.querybuilder.DBWherePanel
Creates and adds a button to the control panel used for editting the list of operators and conditions
makeButtons() - Method in class ptolemy.plot.PlotLive
Deprecated. 
makeDeleteButton(String, String, Item, DragAndDropPanel, String, String) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
makeDeleteButton() creates the Delete Button for the Static Items.
makeDirty() - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableOverviewTable
Makes sure the entire "panel" will be redrawn
makeDirty() - Method in class org.ecoinformatics.seek.querybuilder.DBTableDesktopPane
Makes sure the entire "panel" will be redrawn
makeDynamicItemDeleteButton(String, String, Item, String, String) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
makeDynamicItemDeleteButton() creates the Delete Button for the Dynamic Items.
makeExternalIdentifiers(String, String) - Method in class com.microstar.xml.demo.DtdDemo
Construct a string equivalent of external identifiers.
makeFrame() - Static method in class org.sdm.spa.gui.XMLUIP
 
makeJLabel(String, Dimension) - Static method in class org.kepler.gui.WidgetFactory
create a non-opaque JLabel containing the given displayText, with the minimumSize and preferredSize set to the PrefMinDims Dimension
makeJTextArea(String) - Static method in class org.kepler.gui.WidgetFactory
create a non-opaque JTextField containing the given initialValue, with the minimumSize and preferredSize set to the PrefMinDims Dimension
makeJTextField(String, Dimension) - Static method in class org.kepler.gui.WidgetFactory
create a JTextField containing the given initialValue, with the minimumSize and preferredSize set to the PrefMinDims Dimension
makeLiteral(String) - Method in class com.microstar.xml.demo.DtdDemo
Quote a literal, and escape any '"' or non-ASCII characters within it.
makeNativeLibsExecutable() - Static method in class org.kepler.loader.PermissionManager
 
makeReport() - Static method in class org.kepler.reporting.rio.test.ReportTest
 
makeReportLayout() - Static method in class org.kepler.reporting.rio.test.ReportTest
 
makeSchedule(Map) - Method in class ptolemy.domains.sdf.optimize.OptimalScheduleFinder
Make a schedule using an exhaustive BFS-like optimizing algorithm.
makeScheduleGreedy(Map) - Method in class ptolemy.domains.sdf.optimize.OptimalScheduleFinder
Make a schedule using a greedy (non-optimizing algorithm).
makeScreenshot(List<String>, String, List<String>, String, boolean) - Static method in class org.kepler.loader.util.Screenshot
Create screenshots of workflows.
makeTree(String) - Static method in class org.sdm.spa.gui.XMLUIP
 
mAllRadio - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneIntermediate
 
mAllRadio - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
 
Manager - Class in ptolemy.actor
A Manager governs the execution of a model in a domain-independent way.
Manager() - Constructor for class ptolemy.actor.Manager
Construct a manager in the default workspace with an empty string as its name.
Manager(String) - Constructor for class ptolemy.actor.Manager
Construct a manager in the default workspace with the given name.
Manager(Workspace, String) - Constructor for class ptolemy.actor.Manager
Construct a manager in the given workspace with the given name.
manager - Variable in class ptolemy.domains.de.lib.test.Mutate
 
Manager.State - Class in ptolemy.actor
Instances of this class represent phases of execution, or the state of the manager.
ManagerLeak - Class in ptolemy.actor.test
Simple test for leaks in Manager.
ManagerLeak() - Constructor for class ptolemy.actor.test.ManagerLeak
 
managerStateChanged(Manager) - Method in class org.kepler.ExecutionEngine
implements managerStateChanged in ExecutionListener
managerStateChanged(Manager) - Method in class org.kepler.hadoop.execution.KeplerAppBase
 
managerStateChanged(Manager) - Method in class org.kepler.provenance.ProvenanceRecorder
Report that the manager has changed state.
managerStateChanged(Manager) - Method in class org.kepler.spark.stub.KeplerPairFlatMapFunction
Do nothing.
managerStateChanged(Manager) - Method in class org.kepler.stratosphere.stub.KeplerCoGroupStub
Do nothing.
managerStateChanged(Manager) - Method in class org.kepler.stratosphere.stub.KeplerCrossStub
Do nothing.
managerStateChanged(Manager) - Method in class org.kepler.stratosphere.stub.KeplerMapStub
Do nothing.
managerStateChanged(Manager) - Method in class org.kepler.stratosphere.stub.KeplerMatchStub
Do nothing.
managerStateChanged(Manager) - Method in class org.kepler.stratosphere.stub.KeplerReduceStub
Do nothing.
managerStateChanged(Manager) - Method in interface ptolemy.actor.ExecutionListener
Report that the manager has changed state.
managerStateChanged(Manager) - Method in class ptolemy.actor.gui.ConfigurationApplication
Do nothing.
managerStateChanged(Manager) - Method in class ptolemy.actor.gui.ModelFrame
Report that a manager state has changed.
managerStateChanged(Manager) - Method in class ptolemy.actor.gui.PtolemyApplet
Report that the manager state has changed.
managerStateChanged(Manager) - Method in class ptolemy.actor.lib.CatchExceptionAttribute
React to a change of state in the Manager.
managerStateChanged(Manager) - Method in class ptolemy.actor.lib.ExceptionManager
React to a change of state in the Manager.
managerStateChanged(Manager) - Method in class ptolemy.actor.lib.hoc.ApplyFilterOverArray
Report in debugging statements that the manager state has changed.
managerStateChanged(Manager) - Method in class ptolemy.actor.lib.hoc.ModelReference
Report in debugging statements that the manager state has changed.
managerStateChanged(Manager) - Method in class ptolemy.actor.StreamExecutionListener
Report that the manager has changed state by printing a message to output stream specified to the constructor.
managerStateChanged(Manager) - Method in class ptolemy.moml.MoMLSimpleApplication
Report that the manager has changed state.
managerStateChanged(Manager) - Method in class ptolemy.vergil.actor.lib.ShowTypes
Update displayed types.
managerStateChanged(Manager) - Method in class ptolemy.vergil.basic.RunnableGraphController
Report that a manager state has changed.
managerStateChanged(Manager) - Method in class ptolemy.vergil.TypeAnimatorApplet
React to the fact that the manager state has changed.
mAnyRadio - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneIntermediate
 
mAnyRadio - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
 
Map - Class in org.kepler.ddp.actor.pattern
An actor for the Map DDP pattern.
Map(CompositeEntity, String) - Constructor for class org.kepler.ddp.actor.pattern.Map
Construct a new Map in a container with a given name.
Map(Workspace) - Constructor for class org.kepler.ddp.actor.pattern.Map
Construct a new Map in a workspace.
map(WritableComparable, Writable, Mapper<WritableComparable, Writable, WritableComparable, Writable>.Context) - Method in class org.kepler.hadoop.mapreduce.Mapper4Cross
 
map(WritableComparable, Writable, Mapper<WritableComparable, Writable, WritableComparable, Writable>.Context) - Method in class org.kepler.hadoop.mapreduce.Mapper4DataTransform
 
map(WritableComparable, Writable, Mapper<WritableComparable, Writable, WritableComparable, Writable>.Context) - Method in class org.kepler.hadoop.mapreduce.Mapper4Match
 
map(WritableComparable, Writable, Mapper<WritableComparable, Writable, WritableComparable, TaggedValue>.Context) - Method in class org.kepler.hadoop.mapreduce.Mapper4TagValue
 
map(WritableComparable, Writable, Mapper<WritableComparable, Writable, WritableComparable, Writable>.Context) - Method in class org.kepler.hadoop.mapreduce.MapReduce4Kepler.Mapper4Kepler
 
map(Record, Collector<Record>) - Method in class org.kepler.stratosphere.stub.KeplerMapStub
Transfer the data from Stratosphere to Kepler, execute the workflow, and then transfer the data from Kepler to Stratosphere.
map(Record, Collector<Record>) - Method in class org.kepler.stratosphere.stub.ScriptEngineMapStub
 
map(FunctionToken, ArrayToken) - Static method in class ptolemy.data.expr.UtilityFunctions
Apply the specified function to the specified array and return an array with the results.
MAP_CHILD_ENV - Static variable in class org.kepler.hadoop.director.HadoopEngine
 
mapDapObjectToToken(BaseType, boolean) - Static method in class org.kepler.dataproxy.datasource.opendap.TokenMapper
Maps a DAP data object to a ptII Token object.
mapDapObjectToType(BaseType, boolean) - Static method in class org.kepler.dataproxy.datasource.opendap.TypeMapper
Maps a DAP2 variable (which is represented as an opendap.dap.BaseType to a kepler data Type.
mapDDSToTypeList(DDS, boolean) - Static method in class org.kepler.dataproxy.datasource.opendap.TypeMapper
Maps a DAP2 DDS object to a list of kepler data types.
MapInput - Class in org.kepler.ddp.actor.pattern.stub
A stub actor that writes data into workflows for the Map pattern.
MapInput(CompositeEntity, String) - Constructor for class org.kepler.ddp.actor.pattern.stub.MapInput
Construct a new MapInput in a container with a given name.
mapKARToCurrentFrame() - Method in class org.kepler.gui.kar.ExportArchiveAction
 
MapMapping - Class in ptolemy.graph.mapping
A Mapping that is based on a Map.
MapMapping(Map) - Constructor for class ptolemy.graph.mapping.MapMapping
Construct a MapMapping from a given Map.
MapOperator - Class in org.kepler.spark.operator
An operator for map.
MapOperator(PairFlatMapFunction<Iterator<Tuple2<?, ?>>, ?, ?>, String) - Constructor for class org.kepler.spark.operator.MapOperator
Create a new MapOperator.
MappedLog - Class in org.kepler.io
Log a string (single-line) into a file but also keep all text in a HashSet so that the strings can quickly looked up.
MappedLog() - Constructor for class org.kepler.io.MappedLog
 
MappedLogger - Class in org.kepler.actor
Log a string (single-line) into a file but also keep all text in a HashSet so that the strings can quickly looked up.
MappedLogger(CompositeEntity, String) - Constructor for class org.kepler.actor.MappedLogger
Construct an actor with the given container and name.
Mapper4Cross - Class in org.kepler.hadoop.mapreduce
This class include a mapper for Cross actor.
Mapper4Cross() - Constructor for class org.kepler.hadoop.mapreduce.Mapper4Cross
 
Mapper4DataTransform - Class in org.kepler.hadoop.mapreduce
Mapper4DataTransform is a subclass of the Mapper to read data using a certain input format and save it in SequenceFile format.
Mapper4DataTransform() - Constructor for class org.kepler.hadoop.mapreduce.Mapper4DataTransform
 
Mapper4Kepler() - Constructor for class org.kepler.hadoop.mapreduce.MapReduce4Kepler.Mapper4Kepler
 
Mapper4Match - Class in org.kepler.hadoop.mapreduce
This class include a mapper for Match actor.
Mapper4Match() - Constructor for class org.kepler.hadoop.mapreduce.Mapper4Match
 
Mapper4TagValue - Class in org.kepler.hadoop.mapreduce
Mapper4TagValue is a subclass of the Mapper to read data using a certain input format and tag its value before it is sent out.
Mapper4TagValue() - Constructor for class org.kepler.hadoop.mapreduce.Mapper4TagValue
 
Mapping - Interface in ptolemy.graph.mapping
A mapping from some domain of values into some range.
MappingRefinementDialog - Class in org.kepler.sms.actors
 
MappingRefinementDialog(Frame, MergeActor, MergeEditorDialog) - Constructor for class org.kepler.sms.actors.MappingRefinementDialog
 
MAPRED_SITE - Static variable in class org.kepler.hadoop.director.HadoopEngine
 
MapReduce4Kepler - Class in org.kepler.hadoop.mapreduce
This class include Mapper4Kepler and Reducer4Kepler classes which extend Mapper and Reducer class provided by Hadoop.
MapReduce4Kepler() - Constructor for class org.kepler.hadoop.mapreduce.MapReduce4Kepler
 
MapReduce4Kepler.Mapper4Kepler - Class in org.kepler.hadoop.mapreduce
 
MapReduce4Kepler.Reducer4Kepler - Class in org.kepler.hadoop.mapreduce
 
mapReturnType(Type, Type) - Static method in class ptolemy.data.expr.UtilityFunctions
Return the return type of the map method, given the types of the argument.
mapSimpleTypeToToken(int, String) - Static method in class org.kepler.dataproxy.datasource.opendap.AttTypeMapper
 
mapSimpleTypeToType(int) - Static method in class org.kepler.dataproxy.datasource.opendap.AttTypeMapper
 
MapView - Class in org.kepler.gis.actor
An WebView actor to interact with a map.
MapView(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.MapView
Construct a new MapView in a container with the specified name.
margin - Variable in class org.kepler.workflowrunmanager.gui.ColumnGroup
The margin to use for rendering.
MARGINGSIZE - Static variable in class org.ecoinformatics.seek.ecogrid.EcogridPreferencesTab
Description of the Field
markDisconnections(boolean) - Method in class ptolemy.plot.Plot
Mark the disconnections with a Dot in case value equals true, otherwise these points are not marked.
markDisconnections(boolean) - Method in interface ptolemy.plot.PlotInterface
Mark the disconnections with a Dot in case value equals true, otherwise these points are not marked.
mask - Variable in class org.kepler.actor.io.SshDirectoryList
The file mask for listing only such files.
mask - Variable in class org.kepler.actor.ssh.FileRemover
File mask as String.
MaskedTextPasswordField - Class in org.kepler.ssh
This class prompts the user for a password and attempts to mask input with "*"
MaskedTextPasswordField() - Constructor for class org.kepler.ssh.MaskedTextPasswordField
 
masks - Variable in class org.kepler.actor.io.SshDirectoryList_v1_1
The file masks for listing only such files.
masterEffigy() - Method in class ptolemy.actor.gui.Effigy
Return the effigy that is "in charge" of this effigy.
masterEffigy() - Method in class ptolemy.actor.gui.PtolemyEffigy
Return the effigy that is "in charge" of this effigy.
masterHostAndPort - Variable in class org.kepler.spark.director.SparkEngine
 
Match - Class in org.kepler.ddp.actor.pattern
An actor for the Match DDP pattern.
Match(Workspace) - Constructor for class org.kepler.ddp.actor.pattern.Match
Construct a new Match in a workspace.
Match(CompositeEntity, String) - Constructor for class org.kepler.ddp.actor.pattern.Match
Construct a new Match in a container with a given name.
MatchDisplay - Class in org.sdm.spa
Show the Match Results in a tabulated form.
MatchDisplay(CompositeEntity, String) - Constructor for class org.sdm.spa.MatchDisplay
Construct an actor with the given container and name.
matches(FiringEvent.FiringEventType) - Method in class ptolemy.vergil.debugger.DebugProfile
See if the DebugProfile contains this FiringEventType.
MatchInput - Class in org.kepler.ddp.actor.pattern.stub
A stub actor that writes data into workflows for the Match pattern.
MatchInput(CompositeEntity, String) - Constructor for class org.kepler.ddp.actor.pattern.stub.MatchInput
Construct a new MatchInput in a container with a given name.
matchPrefixOfLength - Variable in class ptolemy.actor.lib.TestExceptionAttribute
If greater than zero, then check that the first n characters of the exception message match, where n is the value of this parameter.
matchString - Variable in class ptolemy.actor.lib.string.StringMatches
The string to be pattern matched to the regular expression.
MathFunction - Class in ptolemy.actor.lib
Deprecated.
This breaks the class mechanism. Generally, it is awkward to have the ports of an actor depend on parameter values. Use UnaryMathFunction instead.
MathFunction(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.MathFunction
Deprecated.
Construct an actor with the given container and name.
MatlabExpression - Class in org.dart.matlab
Allows the user to input a matlab script to be executed when the actor fires.
MatlabExpression(CompositeEntity, String) - Constructor for class org.dart.matlab.MatlabExpression
 
MatlabUtilities - Class in ptolemy.data.expr
This class provides access to the Ptolemy Matlab interface in ptolemy.matlab by using reflection.
MatlabUtilities() - Constructor for class ptolemy.data.expr.MatlabUtilities
 
matrix() - Method in class ptolemy.data.expr.MatrixParser
 
MATRIX - Static variable in class ptolemy.data.type.BaseType
The matrix data type: The least upper bound of all the matrix types.
MatrixAligner - Class in org.cipres.kepler
This MatrixAligner actor wraps the MatrixAligner CORBA service provided by the CIPRes software package.
MatrixAligner(CompositeEntity, String) - Constructor for class org.cipres.kepler.MatrixAligner
Construct a MatrixAligner actor with the given container and name.
matrixConstruct() - Method in class ptolemy.data.expr.PtParser
 
matrixCopy(Complex[][], Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Replace the first matrix argument elements with the values of the second matrix argument.
matrixCopy(Complex[][], int, int, Complex[][], int, int, int, int) - Static method in class ptolemy.math.ComplexMatrixMath
Replace the first matrix argument's values, in the specified row and column range, with the second matrix argument's values, starting from specified row and column of the second matrix.
matrixCopy(double[][], double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Replace the destinationMatrix argument elements with the values of the sourceMatrix argument.
matrixCopy(double[][], int, int, double[][], int, int, int, int) - Static method in class ptolemy.math.DoubleMatrixMath
Replace the destinationMatrix argument's values, in the specified row and column range, with the sourceMatrix argument's values, starting from specified row and column of the second matrix.
matrixCopy(float[][], float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Replace the first matrix argument elements with the values of the second matrix argument.
matrixCopy(float[][], int, int, float[][], int, int, int, int) - Static method in class ptolemy.math.FloatMatrixMath
Replace the first matrix argument's values, in the specified row and column range, with the second matrix argument's values, starting from specified row and column of the second matrix.
matrixCopy(int[][], int[][]) - Static method in class ptolemy.math.IntegerMatrixMath
Replace the first matrix argument elements with the values of the second matrix argument.
matrixCopy(int[][], int, int, int[][], int, int, int, int) - Static method in class ptolemy.math.IntegerMatrixMath
Replace the first matrix argument's values, in the specified row and column range, with the second matrix argument's values, starting from specified row and column of the second matrix.
matrixCopy(long[][], long[][]) - Static method in class ptolemy.math.LongMatrixMath
Replace the first matrix argument elements with the values of the second matrix argument.
matrixCopy(long[][], int, int, long[][], int, int, int, int) - Static method in class ptolemy.math.LongMatrixMath
Replace the first matrix argument's values, in the specified row and column range, with the second matrix argument's values, starting from specified row and column of the second matrix.
MatrixJoin - Class in ptolemy.domains.sdf.lib
This actor joins matrices into a single matrix by tiling.
MatrixJoin(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.MatrixJoin
Construct an actor with the given container and name.
MatrixMapCachedMethod(String, Type[], int, CachedMethod, boolean[]) - Constructor for class ptolemy.data.expr.CachedMethod.MatrixMapCachedMethod
Constructs a CachedMethod$MatrixMapCachedMethod object.
MatrixPane - Class in ptolemy.actor.gui
A graphical component that displays the values in a matrix.
MatrixPane() - Constructor for class ptolemy.actor.gui.MatrixPane
Construct an empty matrix pane.
MatrixParser - Class in ptolemy.data.expr
This Class provides a parser for read matrices in matlab format.
MatrixParser(InputStream) - Constructor for class ptolemy.data.expr.MatrixParser
Constructor with InputStream.
MatrixParser(InputStream, String) - Constructor for class ptolemy.data.expr.MatrixParser
Constructor with InputStream and supplied encoding
MatrixParser(Reader) - Constructor for class ptolemy.data.expr.MatrixParser
Constructor.
MatrixParser(MatrixParserTokenManager) - Constructor for class ptolemy.data.expr.MatrixParser
Constructor with generated Token Manager.
MatrixParserConstants - Interface in ptolemy.data.expr
Token literal values and constants.
MatrixParserTokenManager - Class in ptolemy.data.expr
Token Manager.
MatrixParserTokenManager(SimpleCharStream) - Constructor for class ptolemy.data.expr.MatrixParserTokenManager
Constructor.
MatrixParserTokenManager(SimpleCharStream, int) - Constructor for class ptolemy.data.expr.MatrixParserTokenManager
Constructor.
MatrixParserTreeConstants - Interface in ptolemy.data.expr
 
MatrixSplit - Class in ptolemy.domains.sdf.lib
This actor splits an input matrix into a sequence of matrices.
MatrixSplit(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.MatrixSplit
Construct an actor with the given container and name.
MatrixToArray - Class in ptolemy.actor.lib
Convert a matrix to an array.
MatrixToArray(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.MatrixToArray
Construct an actor with the given container and name.
matrixToArray(MatrixToken) - Static method in class ptolemy.data.MatrixToken
Create a new instance of ArrayToken that contains the values in the specified matrix.
matrixToArrayReturnType(Type) - Static method in class ptolemy.data.MatrixToken
Return the (exact) return type of the toArray function above.
MatrixToDouble - Class in ptolemy.domains.sdf.lib
Deprecated.
Use MatrixToSequence instead.
MatrixToDouble(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.MatrixToDouble
Deprecated.
Construct an actor with the given container and name.
MatrixToken - Class in ptolemy.data
Abstract base class for tokens that contain a 2-D matrix.
MatrixToken() - Constructor for class ptolemy.data.MatrixToken
 
MatrixTokenTableau - Class in ptolemy.actor.gui
A tableau representing matrix tokens in a top-level window with a table.
MatrixTokenTableau(Effigy, String) - Constructor for class ptolemy.actor.gui.MatrixTokenTableau
Construct a new tableau for the model represented by the given effigy.
MatrixTokenTableau(Effigy, String, TableauFrame) - Constructor for class ptolemy.actor.gui.MatrixTokenTableau
Construct a new tableau for the model represented by the given effigy, using the specified frame.
MatrixTokenTableau.Factory - Class in ptolemy.actor.gui
A factory that creates a matrix token tableau.
MatrixToSequence - Class in ptolemy.domains.sdf.lib
This actor unbundles a matrix into a sequence of output tokens.
MatrixToSequence(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.MatrixToSequence
Construct an actor with the given container and name.
MatrixType - Class in ptolemy.data.type
The base type of matrix token classes.
MatrixType(Class, Type, String) - Constructor for class ptolemy.data.type.MatrixType
Construct a new matrix type that represents matrix tokens of the given class with the given number of rows and columns.
MatrixType.BooleanMatrixType - Class in ptolemy.data.type
The boolean matrix data type.
MatrixType.ComplexMatrixType - Class in ptolemy.data.type
The complex matrix data type.
MatrixType.DoubleMatrixType - Class in ptolemy.data.type
The double matrix data type.
MatrixType.FixMatrixType - Class in ptolemy.data.type
The fix matrix data type.
MatrixType.IntMatrixType - Class in ptolemy.data.type
The integer matrix data type.
MatrixType.LongMatrixType - Class in ptolemy.data.type
The long matrix data type.
MatrixViewer - Class in ptolemy.actor.lib.gui
An actor that displays the contents of a matrix input.
MatrixViewer(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.gui.MatrixViewer
Construct an actor with the given container and name.
mAvailFieldNames - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelBase
 
mAvailTableNames - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelBase
 
max - Variable in class org.kepler.actor.ArrayFilter
Remove elements below this value.
max - Variable in class ptolemy.actor.lib.Triangular
The maximum value.
max - Variable in class ptolemy.actor.parameters.DoubleRangeParameter
The maximum value.
max - Variable in class ptolemy.actor.parameters.IntRangeParameter
The maximum value.
max(UnsignedByteToken, UnsignedByteToken) - Static method in class ptolemy.data.expr.UtilityFunctions
Return the maximum of two unsigned bytes.
max(ArrayToken) - Static method in class ptolemy.data.expr.UtilityFunctions
Return the maximum of the contents of the array.
max(double[]) - Static method in class ptolemy.math.DoubleArrayStat
Return the maximum value in the array.
MAX_PORT_EVENT_DATA_LENGTH - Static variable in class org.kepler.provenance.sql.SQLRecordingV8
The maximum length of the data stored in the port_event table.
MAX_SIZE - Static variable in class org.kepler.plotting.PlottingConstants
 
maxAndIndex(double[]) - Static method in class ptolemy.math.DoubleArrayStat
Return the maximum value of the array and the index at which the maximum occurs in the array.
maxAppearanceCount() - Method in class ptolemy.graph.sched.Schedule
Get the maximum appearance counts of all firing elements in the schedule.
maxArrayLength - Variable in class org.kepler.data.conversion.binary.EnsembleActor
 
maxBins - Variable in class org.kepler.spark.mllib.RandomForestModel
Max number of bins to use in discretizing continuous-valued features
maxChecks - Variable in class org.resurgence.actor.StatusChecker
The max amount of checks.
maxDepth - Variable in class org.kepler.spark.mllib.RandomForestModel
Max depth of each tree
MAXDEPTHBOUND - Static variable in class ptolemy.data.type.StructuredType
Set up a bound for the max depth of structured types.
maxFileIncludeSizeKBStr - Static variable in class org.kepler.provenance.sql.SQLRecordingV8.SQLRecordingParametersV8
Name of parameter that specifies maximum size, in KB, of file to include in provenance.
maximum - Variable in class ptolemy.actor.lib.gui.SliderSource
The maximum value of the slider.
Maximum - Class in ptolemy.actor.lib
Read at most one token from each input channel and broadcast the one with the greatest value to the maximumValue output.
Maximum(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Maximum
Construct an actor with the given container and name.
MAXIMUM_STATUS_MESSAGE_TIME - Static variable in class ptolemy.gui.Top
Maximum amount of time that a status message is displayed in milliseconds.
maximumAccurateValueAsDouble() - Method in class ptolemy.actor.util.Time
Return the maximum value of time whose representation as a double is always accurate to the specified time resolution.
maximumCycleMean() - Method in interface ptolemy.graph.analysis.analyzer.CycleMeanAnalyzer
Return the maximum cycle mean for a given directed graph.
maximumCycleMean() - Method in class ptolemy.graph.analysis.CycleMeanAnalysis
Return the maximum cycle mean value.
maximumCycleMean() - Method in class ptolemy.graph.analysis.strategy.KarpCycleMeanStrategy
Return the maximum cycle mean.
maximumLayoutSize(Container) - Method in class com.jgoodies.forms.layout.FormLayout
Returns the maximum dimensions for this layout given the components in the specified target container.
maximumLayoutSize(Container) - Method in class org.mlc.swing.layout.ContainerLayout
 
maximumNumberOfPeaks - Variable in class ptolemy.actor.lib.ArrayPeakSearch
The maximum number of peaks to report.
MaximumProfitToCostRatioAnalysis - Class in ptolemy.graph.analysis
Maximum profit to cost ratio analysis.
MaximumProfitToCostRatioAnalysis(Graph, ToDoubleMapping, ToIntMapping) - Constructor for class ptolemy.graph.analysis.MaximumProfitToCostRatioAnalysis
Construct an instance of this class using a default analyzer.
MaximumProfitToCostRatioAnalysis(MaximumProfitToCostRatioAnalyzer) - Constructor for class ptolemy.graph.analysis.MaximumProfitToCostRatioAnalysis
Construct an instance of this class using a given analyzer.
MaximumProfitToCostRatioAnalyzer - Interface in ptolemy.graph.analysis.analyzer
A common interface for all the maximum profit to cost analyzers.
maximumQueueCapacity - Variable in class ptolemy.domains.pn.kernel.PNDirector
The maximum size of the queues for each communication channel.
maximumRatio() - Method in interface ptolemy.graph.analysis.analyzer.MaximumProfitToCostRatioAnalyzer
Return the maximum profit to cost ratio.
maximumRatio() - Method in class ptolemy.graph.analysis.MaximumProfitToCostRatioAnalysis
Return the maximum profit to cost ratio of the given graph.
maximumRatio() - Method in class ptolemy.graph.analysis.strategy.ParhiMaximumProfitToCostRatioStrategy
Return the maximum profit to cost ratio of the given graph.
maximumReceiverCapacity - Variable in class ptolemy.domains.ddf.kernel.DDFDirector
A Parameter representing the maximum capacity of each receiver controlled by this director.
maximumSize(Container, List, FormLayout.Measure, FormLayout.Measure, FormLayout.Measure) - Method in class com.jgoodies.forms.layout.ConstantSize
Returns this size as pixel size.
maximumSize(Container, List, FormLayout.Measure, FormLayout.Measure, FormLayout.Measure) - Method in interface com.jgoodies.forms.layout.Size
Computes and returns my maximum size applied to the given list of components using the specified measures.
maximumValue - Variable in class ptolemy.actor.lib.ComputeHistogram
The highest value that will be recorded in the histogram.
maximumValue - Variable in class ptolemy.actor.lib.Maximum
The output port for the maximum value.
MaxIndex - Class in ptolemy.actor.lib
Deprecated.
Use Maximum instead.
MaxIndex(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.MaxIndex
Deprecated.
Construct an actor in the specified container with the specified name.
maxIterations - Variable in class ptolemy.domains.continuous.kernel.ContinuousDirector
The maximum number of rounds that an ODE solver can use to resolve the states of integrators.
maxLabel - Variable in class ptolemy.actor.parameters.DoubleRangeParameter
The label text displayed for the maximum end of the slider.
maxLabel - Variable in class ptolemy.actor.parameters.IntRangeParameter
The label text displayed for the maximum end of the slider.
maxLength - Variable in class org.kepler.gis.actor.bbox.CoverBoundingBox
The maximum length of any side of a region within the bounding box.
maxLength - Variable in class org.kepler.gis.actor.SplitBoundingBox
Deprecated.
The maximum length of any side of a region within the bounding box.
maxNextCharInd - Variable in class ptolemy.data.expr.SimpleCharStream
 
maxNextCharInd - Variable in class ptolemy.moml.unit.SimpleCharStream
 
maxOrder(DoubleToken, DoubleToken) - Static method in class ptolemy.data.SmoothToken
Return the maximum number of specified derivatives for the two tokens.
maxOutputLength - Variable in class ptolemy.actor.lib.hoc.ApplyFilterOverArray
The max amount of elements in the output array.
maxParam - Variable in class org.kepler.monitor.test.ActorWithProgressBar
 
maxParam - Variable in class org.kepler.monitor.test.ActorWithTokenCounters
 
maxPastInputsToAverage - Variable in class ptolemy.actor.lib.MovingAverage
The maximum number of past inputs to average.
maxReturnType(Type) - Static method in class ptolemy.data.expr.UtilityFunctions
Return the (exact) return type of the max function above.
maxRows - Variable in class ptolemy.vergil.icon.TableIcon
The maximum number of rows to display.
maxStepSize - Variable in class ptolemy.domains.continuous.kernel.ContinuousDirector
The maximum step size.
maxvalParameter - Variable in class org.ecoinformatics.seek.gis.java_gis.GridReset
The maximum value in a range where the grid pixel value is to be reset.
maxWaitTime - Variable in class org.sdm.spa.BrowserUI
A parameter indicating how many seconds this actor will wait before throwing time out exception.
maxX - Variable in class org.kepler.gis.actor.bbox.BoundingBoxValues
The maximum X value.
maxX - Variable in class org.kepler.gis.actor.bbox.CreateBoundingBox
The maximum X value.
maxX() - Method in class org.kepler.gis.data.BoundingBoxToken
Get the maximum x coordinate.
maxY - Variable in class org.kepler.gis.actor.bbox.BoundingBoxValues
The maximum Y value.
maxY - Variable in class org.kepler.gis.actor.bbox.CreateBoundingBox
The maximum X value.
maxY() - Method in class org.kepler.gis.data.BoundingBoxToken
Get the maximum x coordinate.
mBoolOpers - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIBase
 
mBoundsChanging - Variable in class org.ecoinformatics.seek.querybuilder.DBTableFrame
 
MCApplication - Class in ptolemy.component.test
An application for testing the component domain.
MCApplication() - Constructor for class ptolemy.component.test.MCApplication
 
mCheckboxes - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
 
mCheckOkToDrop - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIBase
 
mClosure - Variable in class org.ecoinformatics.seek.querybuilder.DBWhereOperator
 
mCondCombobox - Variable in class org.ecoinformatics.seek.querybuilder.DBWherePanel
 
mCondInspPanel - Variable in class org.ecoinformatics.seek.querybuilder.DBWherePanel
 
mCriteria - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
 
mCriteriaField - Variable in class org.ecoinformatics.seek.querybuilder.DBWherePanel
 
mCurrInspPanel - Variable in class org.ecoinformatics.seek.querybuilder.DBWherePanel
 
MD5_BINARY - Static variable in class org.kepler.util.sql.Column
An MD5 binary column.
MD5_TEXT - Static variable in class org.kepler.util.sql.Column
An MD5 text column.
mdasDomain - Variable in class org.srb.SProxy
Meta data domain.
mDataFlavor - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableOverviewTable
 
mDataFlavor - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIBase
 
mDataFlavor - Variable in class org.ecoinformatics.seek.querybuilder.DBTableList
 
mDataFlavor - Variable in class org.ecoinformatics.seek.querybuilder.DBWhereList
 
mDataType - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
 
mDepth - Variable in class org.ecoinformatics.seek.querybuilder.DBWhereListCellBase
 
mDesktop - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneAdvanced
 
mDesktop - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneIntermediate
 
mDesktopPane - Variable in class org.ecoinformatics.seek.querybuilder.DBTableJoin
 
mDisplayItem - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
 
mDragOverItem - Variable in class org.ecoinformatics.seek.querybuilder.DBTableList
 
mDragOverItem - Variable in class org.ecoinformatics.seek.querybuilder.DBWhereList
 
mDragSource - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableOverviewTable
 
mDragSource - Variable in class org.ecoinformatics.seek.querybuilder.DBTableList
 
mDragTableName - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIBase
 
mDropTarget - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIBase
 
mDropTarget - Variable in class org.ecoinformatics.seek.querybuilder.DBTableList
 
mDropTarget - Variable in class org.ecoinformatics.seek.querybuilder.DBWhereList
 
mean - Variable in class ptolemy.actor.lib.colt.ColtBreitWigner
mean.
mean - Variable in class ptolemy.actor.lib.colt.ColtNormal
mean.
mean - Variable in class ptolemy.actor.lib.colt.ColtPoisson
The mean.
mean - Variable in class ptolemy.actor.lib.colt.ColtPoissonSlow
mean.
mean - Variable in class ptolemy.actor.lib.Gaussian
The mean of the random number.
mean(double[]) - Static method in class ptolemy.math.DoubleArrayStat
Return the arithmetic mean of the elements in the array.
meanTime - Variable in class ptolemy.actor.lib.PoissonClock
The mean time between events, where the output value transitions.
mEditor - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneSQL
 
mEditorPane - Variable in class org.ecoinformatics.seek.querybuilder.DBWherePanel
 
memory() - Static method in class ptolemy.moml.test.UnloadModelTest
Return the amount of memory used.
MemoryClassLoader - Class in org.kepler.scriptengine.java
ClassLoader that loads .class bytes from memory.
MemoryClassLoader(Map<String, byte[]>, String, ClassLoader) - Constructor for class org.kepler.scriptengine.java.MemoryClassLoader
 
MemoryClassLoader(Map<String, byte[]>, String) - Constructor for class org.kepler.scriptengine.java.MemoryClassLoader
 
MemoryCleaner - Class in ptolemy.gui
Methods that clean up possible memory leaks caused by listeners.
MemoryCleaner() - Constructor for class ptolemy.gui.MemoryCleaner
 
MemoryJavaFileManager - Class in org.kepler.scriptengine.java
JavaFileManager that keeps compiled .class bytes in memory.
MemoryJavaFileManager(JavaFileManager) - Constructor for class org.kepler.scriptengine.java.MemoryJavaFileManager
 
mEndPoint - Variable in class org.ecoinformatics.seek.datasource.EcogridDataCacheItem
 
MENU_PATH_DELIMITER - Static variable in class org.kepler.gui.MenuMapper
 
MENU_SEPARATOR_KEY - Static variable in class org.kepler.gui.MenuMapper
 
MenuActionFactory - Class in ptolemy.vergil.toolbox
A factory that adds a given action or set of actions to a context menu.
MenuActionFactory(Action) - Constructor for class ptolemy.vergil.toolbox.MenuActionFactory
Construct a factory that adds a given action to a given context menu.
MenuActionFactory(Action[], String) - Constructor for class ptolemy.vergil.toolbox.MenuActionFactory
Construct a factory that adds a given group of actions to a given context menu in a submenu with the specified label.
MenuApplication - Class in ptolemy.actor.gui.jnlp
A wrapper that starts up Vergil from a menu.
MenuApplication() - Constructor for class ptolemy.actor.gui.jnlp.MenuApplication
 
MENUBAR_TYPE - Static variable in class ptolemy.vergil.toolbox.FigureAction
When the action was fired from a menubar.
MENUITEM_TYPE - Static variable in class org.kepler.gui.MenuMapper
 
menuItemCreated(JContextMenu, NamedObj, JMenuItem) - Method in interface ptolemy.vergil.toolbox.MenuItemListener
The method to be invoked when a menu item is created, so that this listener can modify the menu item if it needs to.
MenuItemFactory - Interface in ptolemy.vergil.toolbox
This is an interface for factories that create menu items.
menuItemFactoryList() - Method in class ptolemy.vergil.toolbox.PtolemyMenuFactory
Return the list of menu item factories.
menuItemFactoryList() - Method in class ptolemy.vergil.tree.PTreeMenuCreator
Return the list of menu item factories.
MenuItemListener(EffigyFactory, ModelDirectory, Configuration) - Constructor for class ptolemy.actor.gui.TableauFrame.MenuItemListener
Constructs a MenuItemListener object.
MenuItemListener - Interface in ptolemy.vergil.toolbox
An interface for listeners that are invoked when a menu item is created.
menuMapper - Variable in class org.kepler.gui.KeplerMenuHandler
 
MenuMapper - Class in org.kepler.gui
MenuMapper A menu creation Runnable that creates and adds a new JMenuBar that provides a 'view' (in a loose sense) of the ptii menus.
MenuMapper(TableauFrame) - Constructor for class org.kepler.gui.MenuMapper
constructor
merge(RecordToken, RecordToken) - Static method in class ptolemy.data.RecordToken
Return a new token created by merging the two specified tokens, where preference is given to the first token when field labels are the same.
merge(TupleToken, TupleToken) - Static method in class ptolemy.data.TupleToken
Merge two tuple tokens into one by concatenating their tokens.
merge(DDFDirector) - Method in class ptolemy.domains.ddf.kernel.DDFDirector
Merge an opaque composite actor controlled by an inside DDFDirector with the outside domain controlled by this director.
Merge - Class in ptolemy.domains.de.lib
A timed merge actor for the DE domain.
Merge(CompositeEntity, String) - Constructor for class ptolemy.domains.de.lib.Merge
Construct an actor in the specified container with the specified name.
MergeActor - Class in org.kepler.sms.actors
This is a first-cut, dumbed-down, and simple version of a generic merge function based on semantic annotations.
MergeActor(CompositeEntity, String) - Constructor for class org.kepler.sms.actors.MergeActor
Constructor
MergeActor(Workspace) - Constructor for class org.kepler.sms.actors.MergeActor
Constructor
MergeActor.MergeActorAction1 - Class in org.kepler.sms.actors
...
MergeActor.MergeActorAction2 - Class in org.kepler.sms.actors
...
MergeActor.MergeActorInstanceController - Class in org.kepler.sms.actors
...
MergeActorAction1(MergeActor) - Constructor for class org.kepler.sms.actors.MergeActor.MergeActorAction1
 
MergeActorAction2(MergeActor) - Constructor for class org.kepler.sms.actors.MergeActor.MergeActorAction2
 
MergeActorInstanceController(GraphController, MergeActor) - Constructor for class org.kepler.sms.actors.MergeActor.MergeActorInstanceController
 
MergeActorInstanceController(GraphController, AttributeController.Access, MergeActor) - Constructor for class org.kepler.sms.actors.MergeActor.MergeActorInstanceController
 
mergedGridFileName - Variable in class org.ecoinformatics.seek.gis.java_gis.AddGrids
The name to be given to the resulting output file
mergedGridFileName - Variable in class org.ecoinformatics.seek.gis.java_gis.MergeGrids
The file name to be given to the result
mergedGridFileResult - Variable in class org.ecoinformatics.seek.gis.java_gis.AddGrids
The file name of the resulting grid (acts as a trigger when addition is complete)
mergedGridFileResult - Variable in class org.ecoinformatics.seek.gis.java_gis.MergeGrids
The resulting merged grid filename.
MergeEditorDialog - Class in org.kepler.sms.actors
 
MergeEditorDialog(Frame, MergeActor) - Constructor for class org.kepler.sms.actors.MergeEditorDialog
Constructor
MergeGrids - Class in org.ecoinformatics.seek.gis.java_gis
Name: MergeGrids.java
Purpose: The purpose of this actor is to 'merge' two ASC grids.
MergeGrids(CompositeEntity, String) - Constructor for class org.ecoinformatics.seek.gis.java_gis.MergeGrids
 
mergeInputPort - Variable in class org.kepler.sms.actors.MergeActor
 
mergeMultiPartOutputs - Variable in class org.kepler.ddp.actor.pattern.DDPDataSink
If true, merge multiple output files into a single file.
mergeOperation - Variable in class org.ecoinformatics.seek.gis.java_gis.MergeGrids
This parameter describes the type of merge to be executed.
mergePropertiesFile() - Static method in class ptolemy.util.StringUtilities
Merge the properties in lib/ptII.properties with the current properties.
mergeReturnType(Type, Type) - Static method in class ptolemy.data.RecordToken
Return the (exact) return type of the merge function above.
mergeServicesList(Vector) - Method in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
Rather than completely overwriting the existing services, this method allows new services to be merged with the existing ones.
mergeTopTwo() - Method in class ptolemy.kernel.undo.UndoStackAttribute
Merge the top two undo entries into a single action, unless we are in either a redo or an undo, in which case the merge happens automatically and need not be explicitly requested by the client.
mergeVectors(VectorToken, VectorToken) - Static method in class org.kepler.gis.actor.pylaski.PylaskiUtilities
Merges two vector tokens together into one.
message - Variable in class org.kepler.profiling.gui.ExecutionMonitorPanel.ActorInfo
An optional execution message
message(String) - Method in class ptolemy.actor.gui.DebugListenerTableau.DebugListenerFrame
Display the specified message.
message - Variable in class ptolemy.actor.lib.Assert
The error message to display when the assertion is violated.
message - Variable in class ptolemy.actor.lib.ThrowException
The message reported in the exception, which is a string that defaults to "Model triggered an exception".
message - Variable in class ptolemy.actor.lib.ThrowModelError
The message reported in the exception.
message(String) - Method in interface ptolemy.kernel.util.DebugListener
React to a debug message.
message(String) - Method in class ptolemy.kernel.util.LoggerListener
Send the message to the log.
message(String) - Method in class ptolemy.kernel.util.NamedObj
React to a debug message by relaying it to any registered debug listeners.
message(String) - Method in class ptolemy.kernel.util.RecorderListener
Append the message to the current set of messages.
message(String) - Method in class ptolemy.kernel.util.StreamListener
Copy the message argument to the stream associated with the listener.
message(String) - Static method in class ptolemy.util.MessageHandler
Defer to the set message handler to show the specified message.
message(String) - Method in class ptolemy.vergil.basic.BasicGraphController
React to a debug message.
message(String) - Method in class ptolemy.vergil.debugger.DebugController
React to a debug message from the director that we are listening to by ignoring the message.
MessageBasedWebService - Class in org.sdm.spa
Deprecated.
Use org.sdm.spa.WebService or org.sdm.spa.WSWithComplexTypes instead.
MessageBasedWebService(CompositeEntity, String) - Constructor for class org.sdm.spa.MessageBasedWebService
Deprecated.
Construct a WebService actor with the given container and name.
messageBody - Variable in class org.sdm.spa.Email
Generic typed message body.
MessageHandler - Class in ptolemy.gui
Deprecated.
Use ptolemy.util.MessageHandler.
MessageHandler() - Constructor for class ptolemy.gui.MessageHandler
Deprecated.
 
MessageHandler - Class in ptolemy.util
This is a class that is used to report errors.
MessageHandler() - Constructor for class ptolemy.util.MessageHandler
Create a MessageHandler.
messageType - Variable in class org.kepler.spark.mllib.GetLiveMeasurements
 
metadata - Variable in class org.srb.SRBGetMD
srb file's metadata
METADATACLASS - Static variable in class org.ecoinformatics.seek.ecogrid.MetadataSpecificationInterface
Description of the Field
metadataDesParam - Variable in class org.ecoinformatics.seek.ecogrid.EcogridWriter
Ecogrid service URL for receiving metadata and data
metadataDocidPort - Variable in class org.ecoinformatics.seek.ecogrid.EcogridWriter
An output port that broadcasts the metadata doc ID, which is generated by the actor for future reference.
MetadataHandler - Interface in org.kepler.objectmanager
An interface for a metadata handler to provide custom parsing of a NamedObj produced by ActorMetadata
metadataName - Static variable in class org.kepler.dataproxy.datasource.opendap.TokenMapper
 
metadataName - Static variable in class org.kepler.dataproxy.datasource.opendap.TypeMapper
 
metadataOptionsParameter - Variable in class org.kepler.dataproxy.datasource.opendap.OpendapDataSource
Controls if and how the DAP2 metadata is incorporated into the Actors output.
MetadataParser - Class in org.kepler.metadata
 
MetadataParser(CompositeEntity, String) - Constructor for class org.kepler.metadata.MetadataParser
 
metadataPort - Variable in class org.ecoinformatics.seek.ecogrid.EcogridWriter
Accepts a string of metadata describing the data file.
METADATASPECIFICATIONCLASSLIST - Static variable in class org.ecoinformatics.seek.ecogrid.MetadataSpecificationInterface
Description of the Field
MetadataSpecificationInterface - Class in org.ecoinformatics.seek.ecogrid
Title:PlugInQueryTransferInterface Description: This is a plugin interface and it defines a all methods any metadata type should implement into order to search ecogrid service and parse the results Copyright: Copyright (c) 2004 Company:
MetadataSpecificationInterface() - Constructor for class org.ecoinformatics.seek.ecogrid.MetadataSpecificationInterface
 
method - Variable in class org.sdm.spa.WSWithComplexTypes
The web service method name to run.
Method - Interface in ptolemy.component
Interface for the port representing a method call.
METHOD - Static variable in class ptolemy.data.expr.CachedMethod
Indicator of a method (vs. function).
MethodCallPort - Class in ptolemy.component
A port for use in the component domain.
MethodCallPort() - Constructor for class ptolemy.component.MethodCallPort
Construct a port in the default workspace with an empty string as its name.
MethodCallPort(Workspace) - Constructor for class ptolemy.component.MethodCallPort
Construct a port in the specified workspace with an empty string as a name.
MethodCallPort(ComponentEntity, String) - Constructor for class ptolemy.component.MethodCallPort
Construct a port with the given name contained by the specified entity.
MethodCallPort(ComponentEntity, String, boolean) - Constructor for class ptolemy.component.MethodCallPort
Construct an IOPort with a container and a name that is either an input, an output, or both, depending on the third and fourth arguments.
methodDescription() - Method in class ptolemy.data.expr.CachedMethod.ArrayMapCachedMethod
Return an appropriate description of the method being invoked.
methodDescription() - Method in class ptolemy.data.expr.CachedMethod.MatrixMapCachedMethod
Return an appropriate description of the method being invoked.
methodDescription() - Method in class ptolemy.data.expr.CachedMethod
Return a verbose description of the cached method being invoked.
methodName - Variable in class org.sdm.spa.MessageBasedWebService
Deprecated.
The parameter for the method name.
methodName - Variable in class org.sdm.spa.WebService
The parameter for the method name.
methodName - Variable in class org.sdm.spa.WebServiceStub
Deprecated.
 
methodType - Variable in class org.camera.service.CAMERARESTService
The REST service method to use, either GET or POST.
methodType - Variable in class org.kepler.actor.rest.RESTService
The REST service method to use, either GET or POST.
mFields - Variable in class org.kepler.objectmanager.data.db.DSTableDef
 
mFields - Variable in class org.kepler.objectmanager.data.db.DSTableKeyDef
 
mFieldsComboBox - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIBase
 
mFieldsCombobox - Variable in class org.ecoinformatics.seek.querybuilder.DBWherePanel
 
mFileLoc - Variable in class org.kepler.objectmanager.cache.DataCacheFileObject
 
mFlavors - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
 
microsecond - Variable in class ptolemy.actor.lib.DateConstructor
The microseconds.
microsecond - Variable in class ptolemy.actor.lib.DateElements
Microsecond of date received on input.
microstep - Variable in class ptolemy.actor.lib.TimeDelay.PendingEvent
The microstep associated with the pending event.
microstep - Variable in class ptolemy.domains.continuous.lib.PeriodicSampler
The microstep at which to read the input.
microstep() - Method in class ptolemy.domains.de.kernel.DEEvent
Return the microstep of this event.
MicrostepDelay - Class in ptolemy.actor.lib
This actor delays the input by one microstep.
MicrostepDelay(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.MicrostepDelay
Construct an actor with the specified container and name.
mId - Variable in class org.ecoinformatics.seek.querybuilder.DBQueryDefTable
 
mId - Variable in class org.ecoinformatics.seek.querybuilder.DBTableFrame
 
MIDDLE - Static variable in class com.jgoodies.forms.layout.ColumnSpec
By default put components in the middle.
midEffigy - Variable in class org.sdm.spa.TextualInteractionShell
 
MILLIMETER - Static variable in class com.jgoodies.forms.layout.ConstantSize
 
millimeterAsPixel(double, Component) - Static method in class com.jgoodies.forms.layout.Sizes
Converts Millimeters and returns pixels using the resolution of the given component's graphics object.
millimeterAsPixel(double, Component) - Method in class com.jgoodies.forms.util.AbstractUnitConverter
Converts Millimeters and returns pixels using the resolution of the given component's graphics object.
millimeterAsPixel(double, int) - Method in class com.jgoodies.forms.util.AbstractUnitConverter
Converts Millimeters and returns pixels using the specified resolution.
millimeterAsPixel(double, Component) - Method in interface com.jgoodies.forms.util.UnitConverter
Converts Millimeters and returns pixels using the resolution of the given component's graphics object.
millisecond - Variable in class ptolemy.actor.lib.DateConstructor
The milliseconds.
millisecond - Variable in class ptolemy.actor.lib.DateElements
Millisecond of date received on input.
milliseconds(Director, long) - Static method in class ptolemy.actor.util.Time
Return a new Time object whose value equals the argument, which is interpreted in milliseconds.
min - Variable in class org.kepler.actor.ArrayFilter
Remove elements above this value.
min - Variable in class ptolemy.actor.lib.DB
The minimum value of the output.
min - Variable in class ptolemy.actor.lib.Triangular
The minimum value.
min - Variable in class ptolemy.actor.parameters.DoubleRangeParameter
The minimum value.
min - Variable in class ptolemy.actor.parameters.IntRangeParameter
The minimum value.
min(UnsignedByteToken, UnsignedByteToken) - Static method in class ptolemy.data.expr.UtilityFunctions
Return the minimum of two unsigned bytes.
min(ArrayToken) - Static method in class ptolemy.data.expr.UtilityFunctions
Return the minimum of the contents of the array.
min(double[]) - Static method in class ptolemy.math.DoubleArrayStat
Return the minimum value in the array.
MIN_COLSPEC - Static variable in class com.jgoodies.forms.factories.FormFactory
An unmodifyable ColumnSpec that determines its width by computing the maximum of all column component minimum widths.
MIN_ROWSPEC - Static variable in class com.jgoodies.forms.factories.FormFactory
An unmodifyable RowSpec that determines its height by computing the maximum of all column component minimum heights.
minAndIndex(double[]) - Static method in class ptolemy.math.DoubleArrayStat
Return the minimum value of the array and the index at which the minimum occurs in the array.
minBinCount - Variable in class ptolemy.domains.de.kernel.DEDirector
The minimum (initial) number of bins in the calendar queue.
minFiringInterval - Variable in class org.kepler.spark.mllib.GetLiveMeasurements
 
minimalSpanSolutions() - Method in class ptolemy.moml.unit.Solution
Produce all of the minimal span solutions that can be generated from this instance.
minimalSpanSolutions() - Method in class ptolemy.moml.unit.UnitConstraints
Generate the minimal span solutions of the collection.
MINIMIZE - Static variable in class ptolemy.math.Overflow
Singleton implementing Minimize overflow strategy.
minimizeBends - Variable in class ptolemy.vergil.basic.layout.ActorLayoutConfiguration
Whether bends are minimized.
MINIMUM - Static variable in class com.jgoodies.forms.layout.Sizes
Use the maximum of all component minimum sizes as column or row size.
minimum - Variable in class ptolemy.actor.lib.gui.SliderSource
The minimum value of the slider.
Minimum - Class in ptolemy.actor.lib
Read at most one token from each input channel and broadcast the one with the least value to the minimumValue output.
Minimum(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Minimum
Construct an actor with the given container and name.
minimumCycleMean() - Method in interface ptolemy.graph.analysis.analyzer.CycleMeanAnalyzer
Return minimum cycle mean for a given directed graph.
minimumCycleMean() - Method in class ptolemy.graph.analysis.CycleMeanAnalysis
Return minimum cycle mean value.
minimumCycleMean() - Method in class ptolemy.graph.analysis.strategy.KarpCycleMeanStrategy
Return minimum cycle mean.
minimumDelay - Variable in class ptolemy.actor.lib.TimeDelay
Minimum delay to impose if the delay port is connected.
minimumLayoutSize(Container) - Method in class com.jgoodies.forms.layout.FormLayout
Determines the minimum size of the parent container using this form layout.
minimumLayoutSize(Container) - Method in class org.mlc.swing.layout.ContainerLayout
 
minimumQuantization() - Method in class ptolemy.math.FixPoint
Return a new FixPoint value that has the same value as this FixPoint value but with the minimum quantization necessary for representing the value.
minimumStatisticsTime - Static variable in class ptolemy.actor.Manager
The minimum amount of time that may elapse during certain operations before statistics are generated.
minimumValue - Variable in class ptolemy.actor.lib.ComputeHistogram
The lowest value that will be recorded in the histogram.
minimumValue - Variable in class ptolemy.actor.lib.Minimum
The output port for the minimum value.
minLabel - Variable in class ptolemy.actor.parameters.DoubleRangeParameter
The label text displayed for the minimum end of the slider.
minLabel - Variable in class ptolemy.actor.parameters.IntRangeParameter
The label text displayed for the minimum end of the slider.
minorTickSpacing - Variable in class ptolemy.actor.lib.gui.SliderSource
The minor tick spacing of the slider.
minReturnType(Type) - Static method in class ptolemy.data.expr.UtilityFunctions
Return the (exact) return type of the min function above.
mInspContainer - Variable in class org.ecoinformatics.seek.querybuilder.DBWherePanel
 
minus - Variable in class ptolemy.actor.lib.AddSubtract
Input for tokens to be subtracted.
MINUS - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
MINUS - Static variable in interface ptolemy.moml.unit.UParserConstants
RegularExpression Id.
minusInfinity(Quantization) - Method in class ptolemy.math.Overflow
Return the value of minus infinity, or null if unrepresentable.
minusInfinity(Quantization) - Method in class ptolemy.math.Overflow.Saturate
 
minusInfinity(Quantization) - Method in class ptolemy.math.Overflow.ToZero
 
minute - Variable in class ptolemy.actor.lib.DateConstructor
The minutes.
minute - Variable in class ptolemy.actor.lib.DateElements
Minute of date received on input.
minvalParameter - Variable in class org.ecoinformatics.seek.gis.java_gis.GridReset
The minumum value in a range where the grid pixel value is to be reset.
minX - Variable in class org.kepler.gis.actor.bbox.BoundingBoxValues
The minimum X value.
minX - Variable in class org.kepler.gis.actor.bbox.CreateBoundingBox
The maximum X value.
minX() - Method in class org.kepler.gis.data.BoundingBoxToken
Get the minimum x coordinate.
minY - Variable in class org.kepler.gis.actor.bbox.BoundingBoxValues
The minimum Y value.
minY - Variable in class org.kepler.gis.actor.bbox.CreateBoundingBox
The maximum X value.
minY() - Method in class org.kepler.gis.data.BoundingBoxToken
Get the minimum y coordinate.
mirror() - Method in interface ptolemy.graph.analysis.analyzer.MirrorTransformer
Create a mirror of the graph associated with this analyzer with the same runtime class.
mirror(Graph, boolean) - Method in interface ptolemy.graph.analysis.analyzer.MirrorTransformer
Return a mirror of this graph in the form of the argument graph type (i.e., the run-time type of the returned graph is that of the argument graph).
mirror() - Method in class ptolemy.graph.analysis.MirrorTransformation
Create a mirror of the graph associated with this analyzer with the same runtime class.
mirror(Graph, boolean) - Method in class ptolemy.graph.analysis.MirrorTransformation
Return a mirror of this graph in the form of the argument graph type (i.e., the run-time type of the returned graph is that of the argument graph).
mirror() - Method in class ptolemy.graph.analysis.strategy.MirrorTransformerStrategy
Create a mirror of the graph associated with this analyzer with the same runtime class.
mirror(Graph, boolean) - Method in class ptolemy.graph.analysis.strategy.MirrorTransformerStrategy
Return a mirror of this graph in the form of the argument graph type (i.e., the run-time type of the returned graph is that of the argument graph).
MirrorCausalityInterface - Class in ptolemy.domains.modal.modal
This class infers a causality interface from causality interfaces provided in the constructor and in the MirrorCausalityInterface.composeWith(ptolemy.actor.util.CausalityInterface) method.
MirrorCausalityInterface(Actor, CausalityInterface) - Constructor for class ptolemy.domains.modal.modal.MirrorCausalityInterface
Construct a causality interface that mirrors the specified causality interface.
MirrorComposite - Class in ptolemy.actor.lib.hoc
A composite that contains one actor and mirrors the ports and parameters of that actor.
MirrorComposite(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.hoc.MirrorComposite
Create an actor with a name and a container.
MirrorComposite(Workspace) - Constructor for class ptolemy.actor.lib.hoc.MirrorComposite
Construct a MirrorComposite in the specified workspace with no container and an empty string as a name.
MirrorComposite(CompositeEntity, String, boolean) - Constructor for class ptolemy.actor.lib.hoc.MirrorComposite
Create an actor with a name and a container that optionally mirrors the ports that are instances of ParameterPort.
MirrorComposite.MirrorCompositeContents - Class in ptolemy.actor.lib.hoc
This is a specialized composite actor for use in MirrorComposite.
MirrorCompositeContents(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.hoc.MirrorComposite.MirrorCompositeContents
Construct an actor with a name and a container.
mirrorContainerPortsInRefinement(Refinement, Set<Port>) - Static method in class ptolemy.actor.lib.hoc.MultiCompositeActor
Mirror a set of container ports in the refinement.
mirrorPort(Port) - Method in class org.kepler.gui.frame.CaseGraphTableau.AddCaseAction
Returns true if port should be mirrored.
mirrorPort(Port) - Method in class org.kepler.gui.frame.MultiCompositeTableau.AddRefinementAction
Returns true if port should be mirrored.
MirrorPort - Class in ptolemy.actor.lib.hoc
This port mirrors the properties of an associated port.
MirrorPort(Workspace) - Constructor for class ptolemy.actor.lib.hoc.MirrorPort
Construct a port in the specified workspace with an empty string as a name.
MirrorPort(ComponentEntity, String) - Constructor for class ptolemy.actor.lib.hoc.MirrorPort
Create a new instance of a port.
MirrorPortParameter - Class in ptolemy.actor.parameters
This is a PortParameter for MirrorComposites.
MirrorPortParameter(NamedObj, String) - Constructor for class ptolemy.actor.parameters.MirrorPortParameter
Construct a parameter with the given name contained by the specified entity.
MirrorPortParameter(NamedObj, String, Token) - Constructor for class ptolemy.actor.parameters.MirrorPortParameter
Construct a Parameter with the given container, name, and Token.
MirrorTransformation - Class in ptolemy.graph.analysis
A mirror transformations on graphs.
MirrorTransformation(Graph) - Constructor for class ptolemy.graph.analysis.MirrorTransformation
Construct a transformation for a given graph with a default analyzer.
MirrorTransformation(MirrorTransformer) - Constructor for class ptolemy.graph.analysis.MirrorTransformation
Construct a transformation for a given graph and a given analyzer.
MirrorTransformer - Interface in ptolemy.graph.analysis.analyzer
Base interface for a mirror transformer for graphs.
MirrorTransformerStrategy - Class in ptolemy.graph.analysis.strategy
A mirror transformer for graphs.
MirrorTransformerStrategy(Graph) - Constructor for class ptolemy.graph.analysis.strategy.MirrorTransformerStrategy
Construct a transformer for a given graph.
mIsAdv - Variable in class org.ecoinformatics.seek.querybuilder.DBQueryDef
 
mIsChanged - Variable in class org.ecoinformatics.seek.querybuilder.DBTableJoinItem
 
mIsClosure - Variable in class org.ecoinformatics.seek.querybuilder.DBWhereOperator
 
mIsDisplayed - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
 
mIsDisplayed - Variable in class org.ecoinformatics.seek.querybuilder.DBTableField
 
mIsDisplayedCheckbox - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIBase
 
mIsDragOver - Variable in class org.ecoinformatics.seek.querybuilder.DBTableField
 
mIsDragOver - Variable in class org.ecoinformatics.seek.querybuilder.DBWhereListCellBase
 
mIsLinked - Variable in class org.ecoinformatics.seek.querybuilder.DBTableField
 
mIsProcessed - Variable in class org.ecoinformatics.seek.querybuilder.DBJoinPrcTable
 
mIsSelected - Variable in class org.ecoinformatics.seek.querybuilder.DBTableJoinItem
 
MissingClassException - Exception in ptolemy.moml
Thrown on an attempt to evaluate MoML that contains a missing class.
MissingClassException(String, String, String, int, int) - Constructor for exception ptolemy.moml.MissingClassException
Construct a new XML parsing exception. } /** Constructs an Exception with a detail message that includes the name of the first argument.
missingClassName() - Method in exception ptolemy.moml.MissingClassException
Return the node name that caused the exception.
missingValueCode - Variable in class org.kepler.objectmanager.data.DataObjectDescription
 
mItemLeft - Variable in class org.ecoinformatics.seek.querybuilder.DBTableJoinItem
 
mItemRight - Variable in class org.ecoinformatics.seek.querybuilder.DBTableJoinItem
 
mItems - Variable in class org.ecoinformatics.seek.querybuilder.DBJoinPrcTable
 
mItems - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelBase
 
mItems - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableOverviewModel
 
mItems - Variable in class org.ecoinformatics.seek.querybuilder.DBTableListModel
 
mItems - Variable in class org.ecoinformatics.seek.querybuilder.DBWhereModel
 
mItems - Variable in class org.ecoinformatics.seek.querybuilder.DBWhereOperator
 
mJoinItems - Variable in class org.ecoinformatics.seek.querybuilder.DBTableJoin
 
mJoins - Variable in class org.ecoinformatics.seek.querybuilder.DBQueryDef
 
mKeyType - Variable in class org.kepler.objectmanager.data.db.DSTableFieldDef
 
mlCmd - Variable in class org.dart.matlab.MatlabExpression
Path to matlab execuatble. defaults to "matlab"
mList - Variable in class org.ecoinformatics.seek.querybuilder.DBTableFrame
 
mList - Variable in class org.ecoinformatics.seek.querybuilder.DBWherePanel
 
mListBnds - Variable in class org.ecoinformatics.seek.querybuilder.DBTableFrame
 
mListeners - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIBase
 
MM - Static variable in class com.jgoodies.forms.layout.ConstantSize
 
mMissingValueCode - Variable in class org.ecoinformatics.seek.querybuilder.DBTableField
 
mMissingValueCode - Variable in class org.kepler.objectmanager.data.db.DSTableKeyDef
 
mModel - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIBase
 
mModel - Variable in class org.ecoinformatics.seek.querybuilder.DBTableFrame
 
mModel - Variable in class org.ecoinformatics.seek.querybuilder.DBTableList
 
mModel - Variable in class org.ecoinformatics.seek.querybuilder.DBWhereList
 
mModel - Variable in class org.ecoinformatics.seek.querybuilder.DBWherePanel
 
mModel - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
 
mModelHash - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelStd
 
mModelHash - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneIntermediate
 
mModelHash - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
 
mModelListener - Variable in class org.ecoinformatics.seek.querybuilder.DBWherePanel
 
mName - Variable in class org.ecoinformatics.seek.querybuilder.DBQueryDefTable
 
mName - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
 
mName - Variable in class org.kepler.objectmanager.data.db.DSTableDef
 
mNameField - Variable in class org.ecoinformatics.seek.querybuilder.DBWherePanel
 
MNEMONIC_SYMBOL - Static variable in class org.kepler.gui.MenuMapper
 
MobileFunction - Class in ptolemy.actor.lib.hoc
Deprecated.
Use ApplyFunction.
MobileFunction(Workspace) - Constructor for class ptolemy.actor.lib.hoc.MobileFunction
Deprecated.
Construct a MobileFunction in the specified workspace with no container and an empty string as a name.
MobileFunction(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.hoc.MobileFunction
Deprecated.
Construct a MobileFunction with a name and a container.
MobileModel - Class in ptolemy.actor.lib.hoc
This is a composite actor with an input port that accepts MoML descriptions of changes that are applied to the contents.
MobileModel(Workspace) - Constructor for class ptolemy.actor.lib.hoc.MobileModel
Construct an actor in the specified workspace with no container and an empty string as a name.
MobileModel(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.hoc.MobileModel
Construct an actor with a name and a container.
MOD_DEPEND - Static variable in class org.kepler.kar.KARFile
Name object for MOD_DEPEND manifest attribute.
ModalBasePort - Class in ptolemy.domains.modal.modal
A base class that contains common functionality for ModelPort and ModalRefinementPort.
ModalBasePort(Workspace) - Constructor for class ptolemy.domains.modal.modal.ModalBasePort
Construct a port in the given workspace.
ModalBasePort(ComponentEntity, String) - Constructor for class ptolemy.domains.modal.modal.ModalBasePort
Construct a port with a containing actor and a name that is neither an input nor an output.
ModalController - Class in ptolemy.domains.modal.modal
This FSM actor supports mirroring of its ports in its container (which is required to be a ModalModel), which in turn assures mirroring of ports in each of the refinements.
ModalController(CompositeEntity, String) - Constructor for class ptolemy.domains.modal.modal.ModalController
Construct a modal controller with a name and a container.
ModalController(Workspace) - Constructor for class ptolemy.domains.modal.modal.ModalController
Construct a modal controller in the specified workspace with no container and an empty string as a name.
ModalDirector - Class in ptolemy.domains.modal.kernel
Deprecated.
Use FSMDirector
ModalDirector(CompositeEntity, String) - Constructor for class ptolemy.domains.modal.kernel.ModalDirector
Deprecated.
Construct a director in the given container with the given name.
ModalLayoutConfiguration - Class in ptolemy.vergil.basic.layout
Specialized layout configuration dialog for FSMGraphModels.
ModalLayoutConfiguration(NamedObj, String) - Constructor for class ptolemy.vergil.basic.layout.ModalLayoutConfiguration
Creates an initializes a layout configuration specifically tailored for FSMGraphModels.
ModalModel - Class in ptolemy.domains.modal.modal
This is a typed composite actor designed to be a modal model.
ModalModel(Workspace) - Constructor for class ptolemy.domains.modal.modal.ModalModel
Construct a modal model in the specified workspace with no container and an empty string as a name.
ModalModel(CompositeEntity, String) - Constructor for class ptolemy.domains.modal.modal.ModalModel
Construct a modal model with a name and a container.
ModalPort - Class in ptolemy.domains.modal.modal
A port for modal models.
ModalPort(Workspace) - Constructor for class ptolemy.domains.modal.modal.ModalPort
Construct a port in the given workspace.
ModalPort(ComponentEntity, String) - Constructor for class ptolemy.domains.modal.modal.ModalPort
Construct a port with a containing actor and a name that is neither an input nor an output.
ModalRefinement - Class in ptolemy.domains.modal.modal
This modal model actor supports mirroring of its ports in its container (which is required to be a refinement of a state in a ModalModel).
ModalRefinement(CompositeEntity, String) - Constructor for class ptolemy.domains.modal.modal.ModalRefinement
Construct a modal controller with a name and a container.
ModalRefinementPort - Class in ptolemy.domains.modal.modal
A port for refinements in modal models that are themselves modal models.
ModalRefinementPort(ComponentEntity, String) - Constructor for class ptolemy.domains.modal.modal.ModalRefinementPort
Construct a port with a containing actor and a name that is neither an input nor an output.
ModalTableauFactory - Class in ptolemy.vergil.modal.modal
A tableau factory that opens an editor on the contained controller rather than this composite actor.
ModalTableauFactory(NamedObj, String) - Constructor for class ptolemy.vergil.modal.modal.ModalTableauFactory
Create a factory with the given name and container.
ModalTransitionController - Class in ptolemy.vergil.modal.modal
This class provides interaction with relations that contain general purpose refinements that are fired on state transitions in an FSM graph.
ModalTransitionController(GraphController) - Constructor for class ptolemy.vergil.modal.modal.ModalTransitionController
Create a transition controller associated with the specified graph controller.
mode - Variable in class org.geon.FTPClient
Transfer mode: asc/bin
mode - Variable in class org.json.JSONWriter
The current mode.
mode - Variable in class ptolemy.actor.lib.Triangular
The mode of the distribution (peak of triangle).
model(String) - Static method in class ptolemy.data.expr.UtilityFunctions
FIXME.
ModelDirectory - Class in ptolemy.actor.gui
A directory of open models.
ModelDirectory(CompositeEntity, String) - Constructor for class ptolemy.actor.gui.ModelDirectory
Construct a model directory with the specified container and name.
ModelDisplay - Class in ptolemy.vergil.actor.lib
This actor opens a window to display the specified model.
ModelDisplay(CompositeEntity, String) - Constructor for class ptolemy.vergil.actor.lib.ModelDisplay
Construct an actor with the specified container and name.
ModelElementClassProvider - Interface in org.ptolemy.classloading
Get the classes for different types of model elements.
ModelErrorHandler - Interface in ptolemy.kernel.util
Interface for model error handlers.
modelFileIsOK(String) - Method in class ptolemy.util.test.junit.Auto32Tests
Return true if the model should be run.
modelFileIsOK(String) - Method in class ptolemy.util.test.junit.AutoTests
Return true if the model should be run.
modelFileOrURL - Variable in class ptolemy.actor.lib.hoc.ApplyFilterOverArray
The file name or URL of the filter model.
modelFileOrURL - Variable in class ptolemy.actor.lib.hoc.ModelReference
The file name or URL of the model that this actor represents.
ModelFrame - Class in ptolemy.actor.gui
ModelFrame is a top-level window containing a Ptolemy II model control panel.
ModelFrame(CompositeActor) - Constructor for class ptolemy.actor.gui.ModelFrame
Construct a frame to control the specified Ptolemy II model.
ModelFrame(CompositeActor, Tableau) - Constructor for class ptolemy.actor.gui.ModelFrame
Construct a frame to control the specified Ptolemy II model.
ModelFrame(CompositeActor, Tableau, ModelPane) - Constructor for class ptolemy.actor.gui.ModelFrame
Construct a frame to control the specified Ptolemy II model.
ModelKnownFailedTests - Class in ptolemy.util.test.junit
Base class for tests that use models in the auto/knownFailedTests directory.
ModelKnownFailedTests() - Constructor for class ptolemy.util.test.junit.ModelKnownFailedTests
 
modelPane() - Method in class ptolemy.actor.gui.ModelFrame
Return the container into which to place placeable objects.
ModelPane - Class in ptolemy.actor.gui
ModelPane is a panel for interacting with an executing Ptolemy II model.
ModelPane(CompositeActor) - Constructor for class ptolemy.actor.gui.ModelPane
Construct a panel for interacting with the specified Ptolemy II model.
ModelPane(CompositeActor, int, int) - Constructor for class ptolemy.actor.gui.ModelPane
Construct a panel for interacting with the specified Ptolemy II model.
modelPath - Variable in class org.kepler.spark.actor.SaveableModelActor
Location to save the model.
modelPath - Variable in class org.kepler.spark.mllib.SVMApply
The SVM Model taken as input
ModelReference - Class in ptolemy.actor.lib.hoc
This is an atomic actor that can execute a model specified by a file or URL.
ModelReference(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.hoc.ModelReference
Construct a ModelReference with a name and a container.
ModelRepaintController - Class in ptolemy.actor.gui
A class to do scheduled repaints at certain user specified moments in the execution of the model.
ModelRepaintController(NamedObj, String) - Constructor for class ptolemy.actor.gui.ModelRepaintController
Construct an instance of the ModelRepaintController.
models() - Method in class ptolemy.actor.gui.CompositeActorSimpleApplication
Return the list of models.
models() - Method in class ptolemy.actor.gui.ConfigurationApplication
Return a list of the Ptolemy II models that were created by processing the command-line arguments.
ModelScope - Class in ptolemy.data.expr
An abstract class that is useful for implementing expression language scopes for Ptolemy models.
ModelScope() - Constructor for class ptolemy.data.expr.ModelScope
 
ModelService - Class in org.geon
Deprecated.
This class is mostly duplicated by org.geon.LidarWorkflowExecute. Use org.geon.LidarWorkflowExecute instead since it provides more functionality.
ModelService() - Constructor for class org.geon.ModelService
Deprecated.
 
modelString - Variable in class ptolemy.actor.lib.hoc.MobileModel
The input port for model changing request of the inside model.
ModelTests - Class in ptolemy.util.test.junit
Base class for tests that use models in the auto/ directory.
ModelTests() - Constructor for class ptolemy.util.test.junit.ModelTests
 
ModelToFrameManager - Class in org.kepler.gui
This singleton class holds a map of all KeplerGraphFrame objects and their associated NamedObj models.
ModelToFrameManager() - Constructor for class org.kepler.gui.ModelToFrameManager
Empty constructor
modelURL - Variable in class ptolemy.moml.MoMLModelAttribute
URL from which to get the model.
modelURL - Variable in class ptolemy.vergil.actor.lib.ModelDisplay
The file or URL from which to read the starting point model.
ModelUtilities - Class in ptolemy.actor.lib.hoc
A collection of utilities for manipulating a Ptolemy model.
modelValues() - Method in class ptolemy.util.test.junit.Auto32Tests
Return a two dimensional array of arrays of strings that name the model to be executed.
modelValues() - Method in class ptolemy.util.test.junit.AutoCGKnownFailedTests
Return a two dimensional array of arrays of strings that name the model to be executed.
modelValues() - Method in class ptolemy.util.test.junit.AutoNameArchTests
Return a two dimensional array of arrays of strings that name the model to be executed.
modelValues() - Method in class ptolemy.util.test.junit.ModelKnownFailedTests
Return a two dimensional array of arrays of strings that name the model to be executed.
modelValues() - Method in class ptolemy.util.test.junit.ModelTests
Return a two dimensional array of arrays of strings that name the model to be executed.
modelValues(String, String) - Method in class ptolemy.util.test.junit.ModelTests
Return a two dimensional array of arrays of strings that name the model to be executed.
modifiedValue - Variable in class org.ROADnet.QAQC
The output port.
MODIFYCONFIGEVENT - Static variable in interface org.kepler.workflowscheduler.gui.configurationwizard.WorkflowSchedulerConfigEvent
 
ModifyDate - Class in ptolemy.actor.lib
Modify date by adding or subtracting a value to one of the date fields.
ModifyDate(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.ModifyDate
Construct an actor with the given container and name.
ModifyListener() - Constructor for class ptolemy.plot.EditablePlot.ModifyListener
 
ModuleCommandLineArguments - Interface in org.kepler.module
An interface for modules to create command line arguments that org.kepler.Kepler can parse.
ModuleDependencyUtil - Class in org.kepler.kar
 
ModuleDependencyUtil() - Constructor for class org.kepler.kar.ModuleDependencyUtil
 
ModuleDocumentationManagerAction - Class in org.kepler.modulemanager
This action shows the module manager.
ModuleDocumentationManagerAction(TableauFrame) - Constructor for class org.kepler.modulemanager.ModuleDocumentationManagerAction
 
ModuleDocumentationManagerPane - Class in org.kepler.modulemanager
 
ModuleDocumentationManagerPane() - Constructor for class org.kepler.modulemanager.ModuleDocumentationManagerPane
 
ModuleDownloader - Class in org.kepler.modulemanager
Class to download modules when they're needed
ModuleDownloader() - Constructor for class org.kepler.modulemanager.ModuleDownloader
constructor
ModuleDownloadProgressMonitor - Class in org.kepler.modulemanager.gui
 
ModuleDownloadProgressMonitor(Container) - Constructor for class org.kepler.modulemanager.gui.ModuleDownloadProgressMonitor
constructor
ModuleHSQLManager - Interface in org.kepler.module
An interface for modules to start and stop HSQL servers.
ModuleInitializer - Interface in org.kepler.module
An interface for module initialization.
ModuleManagerAction - Class in org.kepler.modulemanager.gui
This action shows the module manager.
ModuleManagerAction(TableauFrame) - Constructor for class org.kepler.modulemanager.gui.ModuleManagerAction
 
ModuleManagerEventListener - Interface in org.kepler.modulemanager
This interface handles event passing from the ModuleDownloader to its clients.
ModuleManagerGuiUtil - Class in org.kepler.modulemanager.gui
Created by David Welker.
ModuleManagerGuiUtil() - Constructor for class org.kepler.modulemanager.gui.ModuleManagerGuiUtil
 
ModuleManagerPane - Class in org.kepler.modulemanager.gui
A class to either display the Module Manger UI or perform module manager functions from the command line.
ModuleManagerPane() - Constructor for class org.kepler.modulemanager.gui.ModuleManagerPane
 
MODULENAME - Static variable in class org.kepler.module.workflowschedulergui.Initialize
 
moduleName - Static variable in class org.kepler.workflowrunmanager.WRMDefaults
 
ModulePair - Class in org.kepler.modulemanager.gui.patch
Created by David Welker.
ModulePair(Module, Module) - Constructor for class org.kepler.modulemanager.gui.patch.ModulePair
 
ModuleShutdownable - Interface in org.kepler.module
An interface for module cleanup.
ModulesList - Class in org.kepler.modulemanager.gui
Created by David Welker.
ModulesList() - Constructor for class org.kepler.modulemanager.gui.ModulesList
 
ModuleTxtKAREntryHandler - Class in org.kepler.kar.handlers
a kar handler to handle downloading modules if a kar file needs them
ModuleTxtKAREntryHandler() - Constructor for class org.kepler.kar.handlers.ModuleTxtKAREntryHandler
constructor
ModuleTxtKAREntryHandler.Factory - Class in org.kepler.kar.handlers
A factory that creates a KAREntryHandler object.
modulo(Type) - Method in class org.geon.DBConnectionToken.DBConnectionType
Return a new type which represents the type that results from moduloing a token of this type and a token of the given argument type.
modulo(Type) - Method in class org.kepler.gis.data.BoundingBoxToken.BoundingBoxType
 
modulo(Type) - Method in class org.kepler.gis.data.GISToken.GISType
 
modulo(Type) - Method in class org.kepler.gis.data.RasterToken.RasterType
 
modulo(Type) - Method in class org.kepler.gis.data.VectorToken.VectorType
 
modulo(Token) - Method in class ptolemy.data.AbstractConvertibleToken
Return a new token whose value is the value of this token modulo the value of the argument token.
modulo(Token) - Method in class ptolemy.data.AbstractNotConvertibleToken
Return a new token whose value is the value of this token modulo the value of the argument token.
modulo(Token) - Method in class ptolemy.data.ArrayToken
Return a new token whose value is the value of this token modulo the value of the argument token.
MODULO - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
modulo(Token) - Method in class ptolemy.data.MatrixToken
Return a new token whose value is this token modulo the value of the argument token.
modulo(Token) - Method in class ptolemy.data.ScalarToken
Return a new token whose value is the value of this token modulo the value of the argument token.
modulo(Token) - Method in class ptolemy.data.Token
Return a new token whose value is the value of this token modulo the value of the argument token.
modulo(Type) - Method in class ptolemy.data.type.ActorType
Return a new type which represents the type that results from moduloing a token of this type and a token of the given argument type.
modulo(Type) - Method in class ptolemy.data.type.BaseType
Return a new type which represents the type that results from moduloing a token of this type and a token of the given argument type.
modulo(Type) - Method in class ptolemy.data.type.FixType
Return a new type which represents the type that results from moduloing a token of this type and a token of the given argument type.
modulo(Type) - Method in class ptolemy.data.type.StructuredType
Return a new type which represents the type that results from moduloing a token of this type and a token of the given argument type.
modulo(Type) - Method in class ptolemy.data.type.test.TestToken.TestType
Return a new type which represents the type that results from moduloing a token of this type and a token of the given argument type.
modulo(Type) - Method in interface ptolemy.data.type.Type
Return a new type which represents the type that results from moduloing a token of this type and a token of the given argument type.
modulo(double[], double) - Static method in class ptolemy.math.DoubleArrayMath
Return a new array that is the formed by the modulo of each element of the input array and z (array[i] % z).
modulo(double[][], double) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new matrix that is constructed from the argument after performing modulo operation by the second argument to every element.
modulo(int[], int) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array that is the formed by the modulo of each element of the input array and z (array[i] % z).
modulo(int[], int[]) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array that is the element-by-element modulo of the two input arrays (array1[i] % array2[i]).
modulo(int[][], int) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new matrix that is constructed by computing the remainders between each element in the matrix and z.
modulo(int[][], int[][]) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new matrix that is constructed by computing the remainders between each element in the first matrix argument and the corresponding element in the second matrix argument.
modulo(long[], long) - Static method in class ptolemy.math.LongArrayMath
Return a new array that is the formed by the modulo of each element of the input array and z (array[i] % z).
modulo(long[], long[]) - Static method in class ptolemy.math.LongArrayMath
Return a new array that is the element-by-element modulo of the two input arrays (array1[i] % array2[i]).
modulo(long[][], long) - Static method in class ptolemy.math.LongMatrixMath
Return a new matrix that is constructed by computing the remainders between each element in the matrix and z.
modulo(long[][], long[][]) - Static method in class ptolemy.math.LongMatrixMath
Return a new matrix that is constructed by computing the remainders between each element in the first matrix argument and the corresponding element in the second matrix argument.
MODULO - Static variable in class ptolemy.math.Overflow
Singleton implementing Modulo overflow strategy.
moduloReverse(Token) - Method in class ptolemy.data.AbstractConvertibleToken
Return a new token whose value is the value of the argument token modulo the value of this token.
moduloReverse(Token) - Method in class ptolemy.data.AbstractNotConvertibleToken
Return a new token whose value is the value of the argument token modulo the value of this token.
moduloReverse(Token) - Method in class ptolemy.data.ArrayToken
Return a new token whose value is the value of the argument modulo the value of this token.
moduloReverse(Token) - Method in class ptolemy.data.MatrixToken
Return a new token whose value is the value of the argument token modulo the value of this token.
moduloReverse(Token) - Method in class ptolemy.data.ScalarToken
Return a new token whose value is the value of this token modulo the value of the argument token.
moduloReverse(Token) - Method in class ptolemy.data.Token
Return a new token whose value is the value of the argument token modulo the value of this token.
mOkToDrop - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIBase
 
MoML_DTD_1 - Static variable in class ptolemy.moml.MoMLParser
The standard MoML DTD, represented as a string.
MOML_PUBLIC_ID_1 - Static variable in class org.kepler.moml.KeplerMetadataExtractor
 
MOML_PUBLIC_ID_1 - Static variable in class org.kepler.objectmanager.cache.ActorCacheObject
 
MoML_PUBLIC_ID_1 - Static variable in class ptolemy.moml.MoMLParser
The public ID for version 1 MoML.
MoMLApplet - Class in ptolemy.actor.gui
This is an applet that constructs a Ptolemy II model from a MoML file.
MoMLApplet() - Constructor for class ptolemy.actor.gui.MoMLApplet
 
MoMLApplication - Class in ptolemy.actor.gui
An application that sets the look and feel to the native look and feel and then reads one or more files specified on the command line, or instantiates one or more Java classes specified by the -class option.
MoMLApplication(String[]) - Constructor for class ptolemy.actor.gui.MoMLApplication
Parse the specified command-line arguments, instantiating classes and reading files that are specified.
MoMLApplication(String, String[]) - Constructor for class ptolemy.actor.gui.MoMLApplication
Parse the specified command-line arguments, instantiating classes and reading files that are specified.
MoMLApplication(String, String[], MessageHandler, ErrorHandler) - Constructor for class ptolemy.actor.gui.MoMLApplication
Parse the specified command-line arguments, instantiating classes and reading files that are specified.
MoMLAttribute - Class in ptolemy.moml
This attribute has an arbitrary MoML description that is exported when the exportMoML() methods of the container are called.
MoMLAttribute(Workspace) - Constructor for class ptolemy.moml.MoMLAttribute
Construct an attribute in the specified workspace with an empty string as a name.
MoMLAttribute(NamedObj, String) - Constructor for class ptolemy.moml.MoMLAttribute
Construct an attribute with the specified container and name.
MoMLChangeRequest - Class in ptolemy.moml
A mutation request specified in MoML.
MoMLChangeRequest(Object, String) - Constructor for class ptolemy.moml.MoMLChangeRequest
Construct a mutation request.
MoMLChangeRequest(Object, NamedObj, String) - Constructor for class ptolemy.moml.MoMLChangeRequest
Construct a mutation request to be executed in the specified context.
MoMLChangeRequest(Object, NamedObj, String, URL) - Constructor for class ptolemy.moml.MoMLChangeRequest
Construct a mutation request to be executed in the specified context.
MoMLChangeRequest(Object, NamedObj, String, boolean) - Constructor for class ptolemy.moml.MoMLChangeRequest
Construct a mutation request to be executed in the specified context.
MoMLCommandLineApplication - Class in ptolemy.moml
A application that reads command line arguments that set parameters and a .xml file naming a model, sets the parameters and runs the model.
MoMLCommandLineApplication(String[]) - Constructor for class ptolemy.moml.MoMLCommandLineApplication
Parse a MoML file that contains a model, update the parameters and run the model.
MoMLEntityResolver() - Constructor for class ptolemy.configs.test.ValidatingXMLParser.MoMLEntityResolver
 
MoMLExportable - Interface in ptolemy.kernel.util
This is an interface for objects that have persistent MoML representations.
MoMLFilter - Interface in ptolemy.moml
This class filters MoML (modeling markup language) identifiers.
MoMLFilterSimple - Class in ptolemy.moml.filter
Filter MoML without using a MoMLParser to parse xml generated by the filter.
MoMLFilterSimple() - Constructor for class ptolemy.moml.filter.MoMLFilterSimple
 
MoMLModelAttribute - Class in ptolemy.moml
An attribute that has a model described in MoML.
MoMLModelAttribute(NamedObj, String) - Constructor for class ptolemy.moml.MoMLModelAttribute
Create a model attribute with the specified container and name.
MoMLModelAttributeController - Class in ptolemy.vergil.basic
A controller that provides binding of an attribute and a refinement model.
MoMLModelAttributeController(GraphController) - Constructor for class ptolemy.vergil.basic.MoMLModelAttributeController
Create a model attribute controller associated with the specified graph controller.
MoMLModelAttributeController(GraphController, AttributeController.Access) - Constructor for class ptolemy.vergil.basic.MoMLModelAttributeController
Create a model attribute controller associated with the specified graph controller.
MoMLModelAttributeControllerFactory - Class in ptolemy.vergil.toolbox
A factory attribute that creates MoMLModelAttributeControllers.
MoMLModelAttributeControllerFactory(NamedObj, String) - Constructor for class ptolemy.vergil.toolbox.MoMLModelAttributeControllerFactory
Create a new factory with the specified name and container.
MoMLParser - Class in ptolemy.moml
This class constructs Ptolemy II models from specifications in MoML (modeling markup language), which is based on XML.
MoMLParser() - Constructor for class ptolemy.moml.MoMLParser
Construct a parser that creates a new workspace into which to put the entities created by the parse() method.
MoMLParser(Workspace) - Constructor for class ptolemy.moml.MoMLParser
Construct a parser that creates entities in the specified workspace.
MoMLParser(Workspace, ClassLoader) - Constructor for class ptolemy.moml.MoMLParser
Construct a parser that creates entities in the specified workspace.
MoMLParser(Workspace, VersionSpecification, ClassLoader) - Constructor for class ptolemy.moml.MoMLParser
Construct a parser that creates entities in the specified workspace with a default verisoin specification.
MoMLParserLeak - Class in ptolemy.moml.test
Leak memory in MoMLParser by throwing an Exception.
MoMLParserLeak() - Constructor for class ptolemy.moml.test.MoMLParserLeak
 
MoMLSimpleApplication - Class in ptolemy.actor.gui
Deprecated.
Use MoMLSimpleApplication instead. MoMLSimpleApplication does not depend on anything in actor.gui
MoMLSimpleApplication() - Constructor for class ptolemy.actor.gui.MoMLSimpleApplication
Deprecated.
A Nullary constructor is necessary so that we can extends this base class with a subclass.
MoMLSimpleApplication(String) - Constructor for class ptolemy.actor.gui.MoMLSimpleApplication
Deprecated.
Parse the xml file and run it.
MoMLSimpleApplication - Class in ptolemy.moml
A simple application that reads in a .xml file as a command line argument and runs it.
MoMLSimpleApplication() - Constructor for class ptolemy.moml.MoMLSimpleApplication
Instantiate a MoMLSimpleApplication.
MoMLSimpleApplication(String) - Constructor for class ptolemy.moml.MoMLSimpleApplication
Parse the xml file and run it.
MoMLSimpleStatisticalApplication - Class in ptolemy.actor.gui
A simple application that reads in a .xml file as a command line argument, runs it and prints out time and memory statistics MoMLApplication sets the look and feel, which starts up Swing, so we can't use MoMLApplication for non-graphical simulations.
MoMLSimpleStatisticalApplication(String[]) - Constructor for class ptolemy.actor.gui.MoMLSimpleStatisticalApplication
Parse the xml file and run it.
MoMLSimpleTimeoutApplication - Class in ptolemy.moml
A simple application that reads in a .xml file as a command line argument, runs it and terminates the run after a time out.
MoMLSimpleTimeoutApplication(String) - Constructor for class ptolemy.moml.MoMLSimpleTimeoutApplication
Parse the xml file and run it.
MoMLUndoEntry - Class in ptolemy.moml
This is an undo action on the undo/redo stack.
MoMLUndoEntry(NamedObj, String) - Constructor for class ptolemy.moml.MoMLUndoEntry
Create an undo entry comprised of the specified MoML code.
MoMLUtilities - Class in ptolemy.data.expr
This class provides access to the Ptolemy MoML parser in ptolemy.moml by using reflection.
MoMLUtilities() - Constructor for class ptolemy.data.expr.MoMLUtilities
 
MoMLVariableChecker - Class in ptolemy.moml
Check that all the variables are defined in a piece of MoML.
MoMLVariableChecker() - Constructor for class ptolemy.moml.MoMLVariableChecker
 
MoMLViewerApplet - Class in ptolemy.vergil
This applet displays a graph view of a specified MoML file.
MoMLViewerApplet() - Constructor for class ptolemy.vergil.MoMLViewerApplet
 
MonitorAttribute - Class in org.kepler.monitor
An instance of this class is automatically added by the monitor manager for each entity to be monitored.
MonitorAttribute(NamedObj, String) - Constructor for class org.kepler.monitor.MonitorAttribute
Creates a monitor attribute.
monitoredErrorWords - Variable in class org.cipres.kepler.GUIRunCIPRes
The monitored words are defined in this parameter.
monitoredErrorWords - Variable in class org.cipres.kepler.JRunCIPRes
The monitored words are defined in this parameter.
MonitoredStatus - Class in org.kepler.monitor
A set of properties subject to be monitored.
MonitoredStatus() - Constructor for class org.kepler.monitor.MonitoredStatus
 
MonitoredStatus.PropertyTimer - Class in org.kepler.monitor
For automatic update of a property in this status object.
MonitoredStatus.State - Class in org.kepler.monitor
Convenience attributes for a "state" property
MonitorIcon - Class in org.kepler.monitor
The actual icon that displays a monitoring figure.
MonitorIcon(NamedObj, String) - Constructor for class org.kepler.monitor.MonitorIcon
 
MonitorImage - Class in ptolemy.vergil.actor.lib
Display image inputs in the icon.
MonitorImage(CompositeEntity, String) - Constructor for class ptolemy.vergil.actor.lib.MonitorImage
Construct an actor.
MonitorManager - Class in org.kepler.monitor
The monitor manager.
MonitorManager(NamedObj, String) - Constructor for class org.kepler.monitor.MonitorManager
Creates a monitor manager.
MonitorReceiverAttribute - Class in ptolemy.vergil.actor.lib
This parameter, when inserted into a port, causes the port to display data available for the actor to read.
MonitorReceiverAttribute(NamedObj, String) - Constructor for class ptolemy.vergil.actor.lib.MonitorReceiverAttribute
Construct an actor with the specified container and name.
MonitorReceiverContents - Class in ptolemy.vergil.actor.lib
This parameter, when inserted into a model or an opaque composite actor, causes all input ports to acquire an attribute that makes them display their contents on the screen.
MonitorReceiverContents(NamedObj, String) - Constructor for class ptolemy.vergil.actor.lib.MonitorReceiverContents
Construct an actor with the specified container and name.
MonitorValue - Class in ptolemy.actor.lib.gui
Monitor inputs by setting the value parameter equal to each arriving token.
MonitorValue(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.gui.MonitorValue
Construct an actor.
MonotonicFunction - Class in ptolemy.data.type
Actors often need to implement monotonic functions as part of the declaration of type constraints.
MonotonicFunction() - Constructor for class ptolemy.data.type.MonotonicFunction
 
MONTH - Static variable in class org.kepler.workflowscheduler.gui.Schedule
 
month - Variable in class ptolemy.actor.lib.DateConstructor
The month.
month - Variable in class ptolemy.actor.lib.DateElements
Month of date received on input.
mOper - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
 
mOperCombobox - Variable in class org.ecoinformatics.seek.querybuilder.DBWherePanel
 
mOperInspPanel - Variable in class org.ecoinformatics.seek.querybuilder.DBWherePanel
 
more() - Method in class org.json.JSONTokener
Determine if the source string still contains characters that next() can consume.
MostRecent - Class in ptolemy.domains.de.lib
Output the most recent input token when the trigger port receives a token.
MostRecent(CompositeEntity, String) - Constructor for class ptolemy.domains.de.lib.MostRecent
Construct an actor with the given container and name.
mouseClicked(MouseEvent) - Method in class org.kepler.reporting.gui.DynamicReportItemPanel.DynamicReportItemLabelMouseListener
 
mouseClicked(MouseEvent) - Method in class org.kepler.reporting.gui.ReportDesignerPanel.ReportItemButtonListener
 
mouseClicked(MouseEvent) - Method in class org.kepler.reporting.gui.ReportDesignerPanel.SectionHeaderListener
 
mouseClicked(MouseEvent) - Method in class org.kepler.reporting.gui.ReportDesignerPanel.TextAreaItemMouseListener
 
mouseClicked(MouseEvent) - Method in class ptolemy.plot.EditablePlot.EditMouseListener
Ignored by this listener.
mouseClicked(MouseEvent) - Method in class ptolemy.plot.PlotBox.MoveListener
Ignored.
mouseClicked(MouseEvent) - Method in class ptolemy.plot.PlotBox.ZoomListener
Request the focus.
mouseClicked(MouseEvent) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Called when the mouse is clicked.
mouseDragged(MouseEvent) - Method in class ptolemy.plot.EditablePlot.ModifyListener
If the mouse is dragged and the 3rd button is pressed, then make a record of a new edit point.
mouseDragged(MouseEvent) - Method in class ptolemy.plot.PlotBox.DragListener
Handle mouse drag events.
mouseDragged(MouseEvent) - Method in class ptolemy.plot.PlotBox.MoveMotionListener
If the mouse is dragged after clicking the third button, then shift what is displayed.
mouseDragged(MouseEvent) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Transform the graph by the amount the mouse is dragged while the middle mouse button is held down.
mouseEntered(MouseEvent) - Method in class org.kepler.reporting.gui.DynamicReportItemPanel.DynamicReportItemLabelMouseListener
 
mouseEntered(MouseEvent) - Method in class org.kepler.reporting.gui.ReportDesignerPanel.ReportItemButtonListener
 
mouseEntered(MouseEvent) - Method in class org.kepler.reporting.gui.ReportDesignerPanel.SectionHeaderListener
 
mouseEntered(MouseEvent) - Method in class org.kepler.reporting.gui.ReportDesignerPanel.TextAreaItemMouseListener
 
mouseEntered(MouseEvent) - Method in class ptolemy.plot.EditablePlot.EditMouseListener
Ignored by this listener.
mouseEntered(MouseEvent) - Method in class ptolemy.plot.PlotBox.MoveListener
Ignored.
mouseEntered(MouseEvent) - Method in class ptolemy.plot.PlotBox.ZoomListener
Ignored.
mouseEntered(MouseEvent) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Called when the mouse enters this component.
mouseExited(MouseEvent) - Method in class org.kepler.reporting.gui.DynamicReportItemPanel.DynamicReportItemLabelMouseListener
 
mouseExited(MouseEvent) - Method in class org.kepler.reporting.gui.ReportDesignerPanel.ReportItemButtonListener
 
mouseExited(MouseEvent) - Method in class org.kepler.reporting.gui.ReportDesignerPanel.SectionHeaderListener
 
mouseExited(MouseEvent) - Method in class org.kepler.reporting.gui.ReportDesignerPanel.TextAreaItemMouseListener
 
mouseExited(MouseEvent) - Method in class ptolemy.plot.EditablePlot.EditMouseListener
Ignored by this listener.
mouseExited(MouseEvent) - Method in class ptolemy.plot.PlotBox.MoveListener
Ignored.
mouseExited(MouseEvent) - Method in class ptolemy.plot.PlotBox.ZoomListener
Ignored.
mouseExited(MouseEvent) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Called when the mouse leaves this component.
MouseInputHandler(GroupableTableHeader) - Constructor for class org.kepler.workflowrunmanager.gui.GroupableTableHeaderUI.MouseInputHandler
 
mouseMoved(MouseEvent) - Method in class ptolemy.plot.EditablePlot.ModifyListener
Ignored by this listener.
mouseMoved(MouseEvent) - Method in class ptolemy.plot.PlotBox.DragListener
Ignored.
mouseMoved(MouseEvent) - Method in class ptolemy.plot.PlotBox.MoveMotionListener
Ignored.
mouseMoved(MouseEvent) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Called when the mouse is moved.
mousePressed(MouseEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIBase.PopupListener
Description of the Method
mousePressed(MouseEvent) - Method in class org.kepler.gui.AnnotatedPTreePopupListener
Description of the Method
mousePressed(MouseEvent) - Method in class org.kepler.reporting.gui.DynamicReportItemPanel.DynamicReportItemLabelMouseListener
 
mousePressed(MouseEvent) - Method in class org.kepler.reporting.gui.ItemsOfInterestPanel.DragMouseAdapter
 
mousePressed(MouseEvent) - Method in class org.kepler.reporting.gui.ReportDesignerPanel.ReportItemButtonListener
 
mousePressed(MouseEvent) - Method in class org.kepler.reporting.gui.ReportDesignerPanel.SectionHeaderListener
 
mousePressed(MouseEvent) - Method in class org.kepler.reporting.gui.ReportDesignerPanel.TextAreaItemMouseListener
 
mousePressed(MouseEvent) - Method in class org.kepler.workflowrunmanager.gui.GroupableTableHeaderUI.MouseInputHandler
 
mousePressed(MouseEvent) - Method in class ptolemy.plot.EditablePlot.EditMouseListener
If the 3rd button is pressed, then start the edit.
mousePressed(MouseEvent) - Method in class ptolemy.plot.PlotBox.MoveListener
If the third button is pressed, then save the X and Y values.
mousePressed(MouseEvent) - Method in class ptolemy.plot.PlotBox.ZoomListener
Handle mouse button 1 events.
mousePressed(LayerEvent) - Method in class ptolemy.vergil.actor.ActorEditorGraphController.LinkCreator
Create a new edge when the mouse is pressed.
mousePressed(MouseEvent) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Store the location of the middle mouse event.
mousePressed(LayerEvent) - Method in class ptolemy.vergil.basic.BasicGraphFrame.MousePressedLayerAdapter
Invoked when the mouse is pressed on a layer or figure.
mousePressed(LayerEvent) - Method in class ptolemy.vergil.basic.LocatableNodeDragInteractor
When the mouse is pressed before dragging, store a copy of the pressed point location so that a relative move can be evaluated for undo purposes.
mousePressed(LayerEvent) - Method in class ptolemy.vergil.modal.FSMGraphController.LinkCreator
Initiate creation of an arc.
mousePressed(LayerEvent) - Method in class ptolemy.vergil.toolbox.AttributeBoundsManipulator
Make a record of the size before resizing.
mousePressed(MouseEvent) - Method in class ptolemy.vergil.tree.PTreeMenuCreator
Create an instance of the menu associated with this factory.
MousePressedLayerAdapter() - Constructor for class ptolemy.vergil.basic.BasicGraphFrame.MousePressedLayerAdapter
 
mouseReleased(MouseEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIBase.PopupListener
Description of the Method
mouseReleased(MouseEvent) - Method in class org.kepler.gui.AnnotatedPTreePopupListener
Description of the Method
mouseReleased(MouseEvent) - Method in class org.kepler.gui.popups.LibraryPopupListener
Description of the Method
mouseReleased(MouseEvent) - Method in class org.kepler.gui.popups.OutlinePopupListener
Description of the Method
mouseReleased(MouseEvent) - Method in class org.kepler.reporting.gui.DynamicReportItemPanel.DynamicReportItemLabelMouseListener
 
mouseReleased(MouseEvent) - Method in class org.kepler.reporting.gui.ReportDesignerPanel.ReportItemButtonListener
 
mouseReleased(MouseEvent) - Method in class org.kepler.reporting.gui.ReportDesignerPanel.SectionHeaderListener
 
mouseReleased(MouseEvent) - Method in class org.kepler.reporting.gui.ReportDesignerPanel.TextAreaItemMouseListener
 
mouseReleased(MouseEvent) - Method in class org.kepler.workflowrunmanager.gui.GroupableTableHeaderUI.MouseInputHandler
 
mouseReleased(MouseEvent) - Method in class ptolemy.plot.EditablePlot.EditMouseListener
If the 3rd button is released, then modify the X and Y coordinates of the edit dataset.
mouseReleased(MouseEvent) - Method in class ptolemy.plot.PlotBox.MoveListener
Note that the moving has stopped.
mouseReleased(MouseEvent) - Method in class ptolemy.plot.PlotBox.ZoomListener
Handle mouse button 1 events.
mouseReleased(MouseEvent) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Called when the mouse is released.
mouseReleased(LayerEvent) - Method in class ptolemy.vergil.basic.LocatableNodeDragInteractor
When the mouse is released after dragging, mark the frame modified and update the panner, and generate an undo entry for the move.
mouseReleased(LayerEvent) - Method in class ptolemy.vergil.toolbox.AttributeBoundsManipulator
Make a persistent record of the new size by issuing a change request.
mouseReleased(MouseEvent) - Method in class ptolemy.vergil.tree.PTreeMenuCreator
Create an instance of the menu associated with this factory.
mouseWheelMoved(MouseWheelEvent) - Method in class ptolemy.plot.PlotBox.ZoomListener2
If the mouse wheel is moved, then zoom accordingly.
mouseWheelMoved(MouseWheelEvent) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Scroll in when the mouse wheel is moved.
move - Variable in class org.resurgence.actor.FileCopier
The boolean parameter, which decides if the files are moved instead of copied.
move(List, MoveAction.MoveType, NamedObj) - Static method in class ptolemy.vergil.toolbox.MoveAction
Move the objects in the specified list up or down in the list of similar objects in their container, as specified by the move type.
Moveable - Interface in ptolemy.kernel.util
This is an interface for objects that can be moved in a list of objects in a container.
MoveAction - Class in ptolemy.vergil.toolbox
An action to move an object up or down in its list.
MoveAction(String, MoveAction.MoveType) - Constructor for class ptolemy.vergil.toolbox.MoveAction
Construct a new action.
moveContextEnd(NamedObj, NamedObj) - Static method in class ptolemy.moml.UndoContext
Return the closing element corresponding to the starting element returned by moveContextStart(), or an empty string if none is needed.
moveContextStart(NamedObj, NamedObj) - Static method in class ptolemy.moml.UndoContext
Return the MoML start element to put us in the context of the immediate container of the containee, assuming the current context is as given by the context argument.
moveDown() - Method in class ptolemy.actor.lib.hoc.MultiCompositePort
Move this object down by one in the list of attributes of its container.
moveDown() - Method in class ptolemy.actor.lib.hoc.RefinementPort
Move this object down by one in the list of attributes of its container.
moveDown() - Method in class ptolemy.domains.modal.modal.ModalPort
Move this object down by one in the list of attributes of its container.
moveDown() - Method in class ptolemy.domains.modal.modal.ModalRefinementPort
Move this object down by one in the list of attributes of its container.
moveDown() - Method in class ptolemy.domains.modal.modal.RefinementPort
Move this object down by one in the list of attributes of its container.
moveDown() - Method in class ptolemy.kernel.ComponentEntity
Move this object down by one in the list of entities of its container.
moveDown() - Method in class ptolemy.kernel.ComponentRelation
Move this object down by one in the list of relations of its container.
moveDown() - Method in class ptolemy.kernel.Port
Move this object down by one in the list of ports of its container.
moveDown() - Method in class ptolemy.kernel.util.Attribute
Move this object down by one in the list of attributes of its container.
moveDown() - Method in interface ptolemy.kernel.util.Moveable
Move this object down by one in the list of objects in its container.
moveDown(Nameable) - Method in class ptolemy.kernel.util.NamedList
Move the specified element down by one in the list.
moveDown() - Method in class ptolemy.kernel.util.NamedObj
Move this object down by one in the list of objects in its container.
MoveListener() - Constructor for class ptolemy.plot.PlotBox.MoveListener
 
MoveMotionListener() - Constructor for class ptolemy.plot.PlotBox.MoveMotionListener
 
MoveToBackAction() - Constructor for class ptolemy.vergil.basic.BasicGraphFrame.MoveToBackAction
 
moveToFirst() - Method in class ptolemy.actor.lib.hoc.MultiCompositePort
Move this object to the first position in the list of attributes of the container.
moveToFirst() - Method in class ptolemy.actor.lib.hoc.RefinementPort
Move this object to the first position in the list of attributes of the container.
moveToFirst() - Method in class ptolemy.domains.modal.modal.ModalPort
Move this object to the first position in the list of attributes of the container.
moveToFirst() - Method in class ptolemy.domains.modal.modal.ModalRefinementPort
Move this object to the first position in the list of attributes of the container.
moveToFirst() - Method in class ptolemy.domains.modal.modal.RefinementPort
Move this object to the first position in the list of attributes of the container.
moveToFirst() - Method in class ptolemy.kernel.ComponentEntity
Move this object to the first position in the list of entities of the container.
moveToFirst() - Method in class ptolemy.kernel.ComponentRelation
Move this object to the first position in the list of relations of the container.
moveToFirst() - Method in class ptolemy.kernel.Port
Move this object to the first position in the list of ports of the container.
moveToFirst() - Method in class ptolemy.kernel.util.Attribute
Move this object to the first position in the list of attributes of the container.
moveToFirst() - Method in interface ptolemy.kernel.util.Moveable
Move this object to the first position in the list of objects in its container.
moveToFirst(Nameable) - Method in class ptolemy.kernel.util.NamedList
Move the specified element to the beginning of the list.
moveToFirst() - Method in class ptolemy.kernel.util.NamedObj
Move this object to the first position in the list of attributes of the container.
moveToFirst() - Method in class ptolemy.vergil.basic.export.web.Title
Move this object to the first position in the list of attributes of the container.
moveToFirst() - Method in class ptolemy.vergil.kernel.attributes.VisibleAttribute
Move this object to the first position in the list of attributes of the container.
MoveToFrontAction() - Constructor for class ptolemy.vergil.basic.BasicGraphFrame.MoveToFrontAction
 
moveToIndex(int) - Method in class ptolemy.actor.lib.hoc.MultiCompositePort
Move this object to the specified position in the list of attributes of the container.
moveToIndex(int) - Method in class ptolemy.actor.lib.hoc.RefinementPort
Move this object to the specified position in the list of attributes of the container.
moveToIndex(int) - Method in class ptolemy.domains.modal.modal.ModalPort
Move this object to the specified position in the list of attributes of the container.
moveToIndex(int) - Method in class ptolemy.domains.modal.modal.ModalRefinementPort
Move this object to the specified position in the list of attributes of the container.
moveToIndex(int) - Method in class ptolemy.domains.modal.modal.RefinementPort
Move this object to the specified position in the list of attributes of the container.
moveToIndex(int) - Method in class ptolemy.kernel.ComponentEntity
Move this object to the specified position in the list of entities of the container.
moveToIndex(int) - Method in class ptolemy.kernel.ComponentRelation
Move this object to the specified position in the list of relations of the container.
moveToIndex(int) - Method in class ptolemy.kernel.Port
Move this object to the specified position in the list of ports of the container.
moveToIndex(int) - Method in class ptolemy.kernel.util.Attribute
Move this object to the specified position in the list of attributes of the container.
moveToIndex(int) - Method in interface ptolemy.kernel.util.Moveable
Move this object to the specified position in the list of objects in its container, where 0 is the first position.
moveToIndex(Nameable, int) - Method in class ptolemy.kernel.util.NamedList
Move the specified element to the specified position in the list.
moveToIndex(int) - Method in class ptolemy.kernel.util.NamedObj
Move this object to the specified position in the list of attributes of the container.
moveToLast() - Method in class ptolemy.actor.lib.hoc.MultiCompositePort
Move this object to the last position in the list of attributes of the container.
moveToLast() - Method in class ptolemy.actor.lib.hoc.RefinementPort
Move this object to the last position in the list of attributes of the container.
moveToLast() - Method in class ptolemy.domains.modal.modal.ModalPort
Move this object to the last position in the list of attributes of the container.
moveToLast() - Method in class ptolemy.domains.modal.modal.ModalRefinementPort
Move this object to the last position in the list of attributes of the container.
moveToLast() - Method in class ptolemy.domains.modal.modal.RefinementPort
Move this object to the last position in the list of attributes of the container.
moveToLast() - Method in class ptolemy.kernel.ComponentEntity
Move this object to the last position in the list of entities of the container.
moveToLast() - Method in class ptolemy.kernel.ComponentRelation
Move this object to the last position in the list of relations of the container.
moveToLast() - Method in class ptolemy.kernel.Port
Move this object to the last position in the list of ports of the container.
moveToLast() - Method in class ptolemy.kernel.util.Attribute
Move this object to the last position in the list of attributes of the container.
moveToLast() - Method in interface ptolemy.kernel.util.Moveable
Move this object to the last position in the list of objects in its container.
moveToLast(Nameable) - Method in class ptolemy.kernel.util.NamedList
Move the specified element to the end of the list.
moveToLast() - Method in class ptolemy.kernel.util.NamedObj
Move this object to the last position in the list of attributes of the container.
moveToLast() - Method in class ptolemy.vergil.basic.export.web.Title
Move this object to the last position in the list of attributes of the container.
moveToLast() - Method in class ptolemy.vergil.kernel.attributes.VisibleAttribute
Move this object to the last position in the list of attributes of the container.
moveUp() - Method in class ptolemy.actor.lib.hoc.MultiCompositePort
Move this object up by one in the list of attributes of the container.
moveUp() - Method in class ptolemy.actor.lib.hoc.RefinementPort
Move this object up by one in the list of attributes of the container.
moveUp() - Method in class ptolemy.domains.modal.modal.ModalPort
Move this object up by one in the list of attributes of the container.
moveUp() - Method in class ptolemy.domains.modal.modal.ModalRefinementPort
Move this object up by one in the list of attributes of the container.
moveUp() - Method in class ptolemy.domains.modal.modal.RefinementPort
Move this object up by one in the list of attributes of the container.
moveUp() - Method in class ptolemy.kernel.ComponentEntity
Move this object up by one in the list of entities of the container.
moveUp() - Method in class ptolemy.kernel.ComponentRelation
Move this object up by one in the list of relations of the container.
moveUp() - Method in class ptolemy.kernel.Port
Move this object up by one in the list of ports of the container.
moveUp() - Method in class ptolemy.kernel.util.Attribute
Move this object up by one in the list of attributes of the container.
moveUp() - Method in interface ptolemy.kernel.util.Moveable
Move this object up by one in the list of objects in its container.
moveUp(Nameable) - Method in class ptolemy.kernel.util.NamedList
Move the specified element up by one in the list.
moveUp() - Method in class ptolemy.kernel.util.NamedObj
Move this object up by one in the list of attributes of the container.
MovingAverage - Class in ptolemy.actor.lib
This actor outputs the moving average of the input sequence.
MovingAverage(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.MovingAverage
Construct an actor with the given container and name.
MovingMaximum - Class in ptolemy.actor.lib
Deprecated.
Use RunningMaximum.
MovingMaximum(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.MovingMaximum
Deprecated.
Construct an actor with the specified container and name.
mParent - Variable in class org.ecoinformatics.seek.querybuilder.DBWhereListCellBase
 
mPnt - Variable in class org.ecoinformatics.seek.querybuilder.DBQueryDefTable
 
mPolygons - Variable in class org.ecoinformatics.seek.querybuilder.DBTableJoinItem
 
mPreferredDim - Variable in class org.ecoinformatics.seek.querybuilder.DBTableField
 
mPrimaryKey - Variable in class org.kepler.objectmanager.data.db.DSTableDef
 
MR_FRAMEWORK_NAME - Static variable in class org.kepler.hadoop.director.HadoopEngine
 
MR_JOBTRACKER_ADDRESS - Static variable in class org.kepler.hadoop.director.HadoopEngine
 
mRecordId - Variable in class org.ecoinformatics.seek.datasource.EcogridMetaDataCacheItem
 
mRect - Variable in class org.ecoinformatics.seek.querybuilder.DBTableField
 
mRect - Variable in class org.ecoinformatics.seek.querybuilder.DBWhereListCellBase
 
mRejectChanges - Variable in class org.ecoinformatics.seek.querybuilder.DBWherePanel
 
mRemoveBtn - Variable in class org.ecoinformatics.seek.querybuilder.DBWherePanel
 
mRenderer - Variable in class org.ecoinformatics.seek.querybuilder.DBTableList
 
mRenderer - Variable in class org.ecoinformatics.seek.querybuilder.DBWhereList
 
mRootObj - Variable in class org.ecoinformatics.seek.querybuilder.DBWhereModel
 
MS_SINCE_EPOCH - Static variable in class org.kepler.date.CreateDate
Constant string for special case of milliseconds since epoch.
mSchema - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelBase
 
mSchema - Variable in class org.ecoinformatics.seek.querybuilder.DBTableDesktopPane
 
mSchema - Variable in class org.ecoinformatics.seek.querybuilder.DBTableJoin
 
mSchema - Variable in class org.ecoinformatics.seek.querybuilder.DBWhereList
 
mSchema - Variable in class org.ecoinformatics.seek.querybuilder.DBWherePanel
 
mSchema - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneAdvanced
 
mSchema - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneIntermediate
 
mSchema - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
 
mScrollPane - Variable in class org.ecoinformatics.seek.querybuilder.DBTableFrame
 
mSecondaryKeys - Variable in class org.kepler.objectmanager.data.db.DSTableDef
 
mSelectedItem - Variable in class org.ecoinformatics.seek.querybuilder.DBTableJoin
 
mSelectPanel - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneAdvanced
 
mSelects - Variable in class org.ecoinformatics.seek.querybuilder.DBQueryDef
 
mSimulatedListAction - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
 
mSimulatedListList - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
 
mSimulatedListPanel - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
 
mSplitPane - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneAdvanced
 
mSplitPane - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneIntermediate
 
mSplitPane - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
 
mSrcList - Static variable in class org.ecoinformatics.seek.querybuilder.DBTableList
 
mSubTableView - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
 
mTable - Variable in class org.ecoinformatics.seek.querybuilder.DBJoinPrcTable
 
mTable - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableOverviewModel
 
mTable - Variable in class org.kepler.objectmanager.data.db.DSTableFieldDef
 
mTable - Variable in class org.kepler.objectmanager.data.db.DSTableKeyDef
 
mTableDef - Variable in class org.ecoinformatics.seek.querybuilder.DBTableFrame
 
mTableField - Variable in class org.ecoinformatics.seek.querybuilder.DBTableField
 
mTableFrame - Variable in class org.ecoinformatics.seek.querybuilder.DBTableField
 
mTableFrame - Variable in class org.ecoinformatics.seek.querybuilder.DBTableListModel
 
mTableId - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
 
mTableJoins - Variable in class org.ecoinformatics.seek.querybuilder.DBTableDesktopPane
 
mTableJoins - Variable in class org.ecoinformatics.seek.querybuilder.DBTableList
 
mTableJoins - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneAdvanced
 
mTableJoins - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneIntermediate
 
mTableList - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneAdvanced
 
mTableList - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneIntermediate
 
mTableList - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
 
mTableModel - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneAdvanced
 
mTableModel - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneIntermediate
 
mTableModel - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
 
mTableModelListener - Variable in class org.ecoinformatics.seek.querybuilder.DBTableDesktopPane
 
mTableModelListener - Variable in class org.ecoinformatics.seek.querybuilder.DBTableFrame
 
mTableModelListener - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneAdvanced
 
mTableModelListener - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneIntermediate
 
mTableModelListener - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
 
mTableName - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
 
mTables - Variable in class org.ecoinformatics.seek.querybuilder.DBQueryDef
 
mTables - Variable in class org.ecoinformatics.seek.querybuilder.DBTableDesktopPane
 
mTableSchemaPane - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
 
mTablesComboBox - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIBase
 
mTablesCombobox - Variable in class org.ecoinformatics.seek.querybuilder.DBWherePanel
 
mTablesViewHash - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneIntermediate
 
mTablesViewHash - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
 
mTableView - Variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableOverviewModel
 
mTableView - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneAdvanced
 
mTableView - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneIntermediate
 
mTableView - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
 
mTextScrollPane - Variable in class org.ecoinformatics.seek.querybuilder.DBWherePanel
 
mu2lin(byte) - Static method in class ptolemy.media.Audio
Convert mu-255 companded representation of an audio sample into an integer linear representation.
MULTI_IOPORT_COORDINATES - Static variable in class ptolemy.vergil.actor.ExternalIOPortController
Polygon coordinates for input multiport.
MULTI_IPORT_COORDINATES - Static variable in class ptolemy.vergil.actor.ExternalIOPortController
Polygon coordinates for input output multiport.
MULTI_LINE_COMMENT - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
MULTI_OPORT_COORDINATES - Static variable in class ptolemy.vergil.actor.ExternalIOPortController
Polygon coordinates for output multiport.
MultiCompositeActor - Class in ptolemy.actor.lib.hoc
A composite actor that can have several refinements.
MultiCompositeActor(Workspace) - Constructor for class ptolemy.actor.lib.hoc.MultiCompositeActor
Construct a composite actor in the specified workspace with no container and an empty string as a name.
MultiCompositeActor(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.hoc.MultiCompositeActor
Construct a composite actor with a name and a container.
MultiCompositePort - Class in ptolemy.actor.lib.hoc
A port for multi-composite actors.
MultiCompositePort(Workspace) - Constructor for class ptolemy.actor.lib.hoc.MultiCompositePort
Construct a port in the given workspace.
MultiCompositePort(ComponentEntity, String) - Constructor for class ptolemy.actor.lib.hoc.MultiCompositePort
Construct a port with a containing actor and a name that is neither an input nor an output.
MultiCompositeTableau - Class in org.kepler.gui.frame
An editor tableau for MultiCompositeActors.
MultiCompositeTableau(PtolemyEffigy, String) - Constructor for class org.kepler.gui.frame.MultiCompositeTableau
Create a new multicomposite editor tableau with the specified container and name.
MultiCompositeTableau(PtolemyEffigy, String, LibraryAttribute) - Constructor for class org.kepler.gui.frame.MultiCompositeTableau
Create a new multicomposite editor tableau with the specified container, name, and default library.
MultiCompositeTableau.AddRefinementAction - Class in org.kepler.gui.frame
Class implementing the Add Refinement menu command.
MultiCompositeTableau.RemoveRefinementAction - Class in org.kepler.gui.frame
Class implementing the Remove Refinement menu command.
MultiContainerFrame - Interface in org.mlc.swing.layout
An interface for frames that can have multiple containers.
MultiHashMap<K,V> - Class in ptolemy.util
MultiHashMap is an implementation of the MultiMap interface.
MultiHashMap() - Constructor for class ptolemy.util.MultiHashMap
 
MultiInstanceComposite - Class in ptolemy.actor.lib.hoc
A TypedCompositeActor that creates multiple instances of itself during the preinitialize phase of model execution.
MultiInstanceComposite(Workspace) - Constructor for class ptolemy.actor.lib.hoc.MultiInstanceComposite
Construct a MultiInstanceComposite actor in the specified workspace with no container and an empty string as a name.
MultiInstanceComposite(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.hoc.MultiInstanceComposite
Construct a MultiInstanceComposite actor with the given container and name.
MultiLineCommentMode - Static variable in interface ptolemy.data.expr.PtParserConstants
Lexical state.
MultiLineInputFormat - Class in org.kepler.hadoop.io.input
This class extend FileInputFormat class to read multiple lines in each map function.
MultiLineInputFormat() - Constructor for class org.kepler.hadoop.io.input.MultiLineInputFormat
 
MultiLineRecordReader - Class in org.kepler.hadoop.io.input
This class treats keys as offset in file and value as line.
MultiLineRecordReader() - Constructor for class org.kepler.hadoop.io.input.MultiLineRecordReader
 
MultipleEnabledTransitionsException - Exception in ptolemy.domains.modal.kernel
Thrown when multiple outgoing transitions from one state are enabled at the same time.
MultipleEnabledTransitionsException(String) - Constructor for exception ptolemy.domains.modal.kernel.MultipleEnabledTransitionsException
Construct an exception with a detail message.
MultipleEnabledTransitionsException(Nameable, String) - Constructor for exception ptolemy.domains.modal.kernel.MultipleEnabledTransitionsException
Construct an exception with a detail message that includes the name of the first argument.
MultipleLineReader - Class in org.kepler.hadoop.io.input
A class that provides a multiple line reader from an input stream.
MultipleLineReader(InputStream) - Constructor for class org.kepler.hadoop.io.input.MultipleLineReader
Create a line reader that reads from the given stream using the default buffer-size (64k).
MultipleLineReader(InputStream, int) - Constructor for class org.kepler.hadoop.io.input.MultipleLineReader
Create a line reader that reads from the given stream using the given buffer-size.
MultipleLineReader(InputStream, Configuration) - Constructor for class org.kepler.hadoop.io.input.MultipleLineReader
Create a line reader that reads from the given stream using the io.file.buffer.size specified in the given Configuration.
Multiplexor - Class in ptolemy.actor.lib
This actor selects from the channels on the input port, copying the input from one channel to the output, based on the most recently received value on the select input.
Multiplexor(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Multiplexor
Construct an actor in the specified container with the specified name.
multiplicationFactor - Variable in class org.ecoinformatics.seek.gis.java_gis.GridReset
if newvalParameter is empty, multiply the existing value by this factor
multiply(Type) - Method in class org.geon.DBConnectionToken.DBConnectionType
Return a new type which represents the type that results from multiplying a token of this type and a token of the given argument type.
multiply(Type) - Method in class org.kepler.gis.data.BoundingBoxToken.BoundingBoxType
 
multiply(Type) - Method in class org.kepler.gis.data.GISToken.GISType
 
multiply(Type) - Method in class org.kepler.gis.data.RasterToken.RasterType
 
multiply(Type) - Method in class org.kepler.gis.data.VectorToken.VectorType
 
multiply - Variable in class ptolemy.actor.lib.MultiplyDivide
Input for tokens to be multiplied.
multiply(Token) - Method in class ptolemy.data.AbstractConvertibleToken
Return a new token whose value is the value of this token multiplied by the value of the argument token.
multiply(Token) - Method in class ptolemy.data.AbstractNotConvertibleToken
Return a new token whose value is the value of this token multiplied by the value of the argument token.
multiply(Token) - Method in class ptolemy.data.ArrayToken
Multiply this array token by the specified argument.
MULTIPLY - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
multiply(Token) - Method in class ptolemy.data.MatrixToken
Return a new token whose value is the value of this token multiplied by the value of the argument token.
multiply(Token) - Method in class ptolemy.data.ScalarToken
Return a new token whose value is the value of this token multiplied by the value of the argument token.
multiply(Token) - Method in class ptolemy.data.Token
Return a new token whose value is the value of this token multiplied by the value of the argument token.
multiply(Type) - Method in class ptolemy.data.type.ActorType
Return a new type which represents the type that results from multiplying a token of this type and a token of the given argument type.
multiply(Type) - Method in class ptolemy.data.type.BaseType
Return a new type which represents the type that results from multiplying a token of this type and a token of the given argument type.
multiply(Type) - Method in class ptolemy.data.type.FixType
Return a new type which represents the type that results from multiplying a token of this type and a token of the given argument type.
multiply(Type) - Method in class ptolemy.data.type.StructuredType
Return a new type which represents the type that results from multiplying a token of this type and a token of the given argument type.
multiply(Type) - Method in class ptolemy.data.type.test.TestToken.TestType
Return a new type which represents the type that results from multiplying a token of this type and a token of the given argument type.
multiply(Type) - Method in interface ptolemy.data.type.Type
Return a new type which represents the type that results from multiplying a token of this type and a token of the given argument type.
multiply(Complex) - Method in class ptolemy.math.Complex
Return a new complex number that is formed by multiplying this complex number by the specified complex number.
multiply(Complex[], Complex[]) - Static method in class ptolemy.math.ComplexArrayMath
Return a new array that is the element-by-element multiplication of the two input arrays.
multiply(Complex[], Complex) - Static method in class ptolemy.math.ComplexArrayMath
Return a new array that is constructed from the argument by multiplying each element in array by the second argument, which is a complex number.
multiply(Complex[][], double) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new matrix that is constructed by multiplying the matrix by a real scaleFactor.
multiply(Complex[][], Complex) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new matrix that is constructed by multiplying the matrix by a complex scaleFactor.
multiply(Complex[][], Complex[]) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new array that is constructed from the argument by pre-multiplying the array (treated as a row vector) by a matrix.
multiply(Complex[], Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new array that is constructed from the argument by post-multiplying the matrix by an array (treated as a row vector).
multiply(Complex[][], Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new matrix that is constructed from the argument by multiplying the first matrix by the second one.
multiply(double[], double[]) - Static method in class ptolemy.math.DoubleArrayMath
Return a new array that is the element-by-element multiplication of the two input arrays.
multiply(double[], double) - Static method in class ptolemy.math.DoubleArrayMath
Return a new array that is constructed from the argument by multiplying each element in the array by the second argument, which is a double.
multiply(double[][], double) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new matrix that is constructed by multiplying the matrix by a scaleFactor.
multiply(double[][], double[]) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new array that is constructed from the argument by pre-multiplying the array (treated as a row vector) by a matrix.
multiply(double[], double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new array that is constructed from the argument by post-multiplying the matrix by an array (treated as a row vector).
multiply(double[][], double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new matrix that is constructed from the argument by multiplying the first matrix by the second one.
multiply(FixPoint) - Method in class ptolemy.math.FixPoint
Return a FixPoint with a value equal to the product of this FixPoint and the argument.
multiply(FixPoint, Quantization) - Method in class ptolemy.math.FixPoint
Return a FixPoint with a value equal to the product of this FixPoint and the argument.
multiply(float[], float[]) - Static method in class ptolemy.math.FloatArrayMath
Return a new array that is the element-by-element multiplication of the two input arrays.
multiply(float[], float) - Static method in class ptolemy.math.FloatArrayMath
Return a new array that is constructed from the argument by multiplying each element in the array by the second argument, which is a float.
multiply(float[][], float) - Static method in class ptolemy.math.FloatMatrixMath
Return a new matrix that is constructed by multiplying the matrix by a scaleFactor.
multiply(float[][], float[]) - Static method in class ptolemy.math.FloatMatrixMath
Return a new array that is constructed from the argument by pre-multiplying the array (treated as a row vector) by a matrix.
multiply(float[], float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Return a new array that is constructed from the argument by post-multiplying the matrix by an array (treated as a row vector).
multiply(float[][], float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Return a new matrix that is constructed from the argument by multiplying the first matrix by the second one.
multiply(Fraction) - Method in class ptolemy.math.Fraction
Multiply this fraction by the given fraction.
multiply(Fraction[], Fraction[]) - Static method in class ptolemy.math.FractionArrayMath
Return a new array that is the element-by-element multiplication of the two input arrays.
multiply(Fraction[], Fraction) - Static method in class ptolemy.math.FractionArrayMath
Return a new array that is constructed from the argument by multiplying each element in the array by the second argument, which is a Fraction.
multiply(Fraction[][], Fraction) - Static method in class ptolemy.math.FractionMatrixMath
Return a new matrix that is constructed by multiplying the matrix by a scaleFactor.
multiply(Fraction[], Fraction[][]) - Static method in class ptolemy.math.FractionMatrixMath
Return a new array that is constructed from the argument by pre-multiplying the matrix by an array (treated as a row vector).
multiply(Fraction[][], Fraction[]) - Static method in class ptolemy.math.FractionMatrixMath
Return a new array that is constructed from the argument by post-multiplying the matrix by an array (treated as a column vector).
multiply(Fraction[][], Fraction[][]) - Static method in class ptolemy.math.FractionMatrixMath
Return a new matrix that is constructed from the argument by multiplying the first matrix by the second one.
multiply(int[], int[]) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array that is the element-by-element multiplication of the two input arrays.
multiply(int[], int) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array that is constructed from the argument by multiplying each element in the array by the second argument, which is an int.
multiply(int[][], int) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new matrix that is constructed by multiplying the matrix by a scaleFactor.
multiply(int[][], int[]) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new array that is constructed from the argument by pre-multiplying the array (treated as a row vector) by a matrix.
multiply(int[], int[][]) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new array that is constructed from the argument by post-multiplying the matrix by an array (treated as a row vector).
multiply(int[][], int[][]) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new matrix that is constructed from the argument by multiplying the first matrix by the second one.
multiply(long[], long[]) - Static method in class ptolemy.math.LongArrayMath
Return a new array that is the element-by-element multiplication of the two input arrays.
multiply(long[], long) - Static method in class ptolemy.math.LongArrayMath
Return a new array that is constructed from the argument by multiplying each element in the array by the second argument, which is a long.
multiply(long[][], long) - Static method in class ptolemy.math.LongMatrixMath
Return a new matrix that is constructed by multiplying the matrix by a scaleFactor.
multiply(long[][], long[]) - Static method in class ptolemy.math.LongMatrixMath
Return a new array that is constructed from the argument by pre-multiplying the array (treated as a row vector) by a matrix.
multiply(long[], long[][]) - Static method in class ptolemy.math.LongMatrixMath
Return a new array that is constructed from the argument by post-multiplying the matrix by an array (treated as a row vector).
multiply(long[][], long[][]) - Static method in class ptolemy.math.LongMatrixMath
Return a new matrix that is constructed from the argument by multiplying the first matrix by the second one.
MULTIPLY - Static variable in interface ptolemy.moml.unit.UParserConstants
RegularExpression Id.
multiplyBy(Unit) - Method in class ptolemy.moml.unit.Unit
Multiply this Unit by another Unit.
MultiplyDivide - Class in ptolemy.actor.lib
A polymorphic multiplier and/or divider.
MultiplyDivide(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.MultiplyDivide
Construct an actor in the specified container with the specified name.
multiplyElements(Complex[][], Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new matrix that is constructed by element by element multiplication of the two matrix arguments.
multiplyElements(double[][], double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new matrix that is constructed by element by element multiplication of the two matrix arguments.
multiplyElements(float[][], float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Return a new matrix that is constructed by element by element multiplication of the two matrix arguments.
multiplyElements(Fraction[][], Fraction[][]) - Static method in class ptolemy.math.FractionMatrixMath
Return a new matrix that is constructed by element by element multiplication of the two matrix arguments.
multiplyElements(int[][], int[][]) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new matrix that is constructed by element by element multiplication of the two matrix arguments.
multiplyElements(long[][], long[][]) - Static method in class ptolemy.math.LongMatrixMath
Return a new matrix that is constructed by element by element multiplication of the two matrix arguments.
multiplyPrecision(Precision, Precision) - Static method in class ptolemy.math.FixPoint
Determines the Precision of an multiply operation between two FixPoint values.
multiplyReverse(Token) - Method in class ptolemy.data.AbstractConvertibleToken
Return a new token whose value is the value of the argument token multiplied by the value of this token.
multiplyReverse(Token) - Method in class ptolemy.data.AbstractNotConvertibleToken
Return a new token whose value is the value of the argument token multiplied by the value of this token.
multiplyReverse(Token) - Method in class ptolemy.data.ArrayToken
Multiply this array token by the specified argument.
multiplyReverse(Token) - Method in class ptolemy.data.MatrixToken
Return a new token whose value is the value of the argument token multiplied by the value of this token.
multiplyReverse(Token) - Method in class ptolemy.data.ScalarToken
Return a new token whose value is the value of this token multiplied by the value of the argument token.
multiplyReverse(Token) - Method in class ptolemy.data.Token
Return a new token whose value is the value of the argument token multiplied by the value of this token.
MULTIPORT_CONNECTION_SPACING - Static variable in class ptolemy.vergil.actor.IOPortController
The spacing between individual connections to a multiport.
MultiportToSinglePort - Class in ptolemy.moml.filter
A filter to convert specific multiports of specific actors to a single ports.
MultiportToSinglePort() - Constructor for class ptolemy.moml.filter.MultiportToSinglePort
 
MultirateFSMDirector - Class in ptolemy.domains.modal.kernel
This director extends FSMDirector by supporting production and consumption of multiple tokens on a port in a firing.
MultirateFSMDirector(CompositeEntity, String) - Constructor for class ptolemy.domains.modal.kernel.MultirateFSMDirector
Construct a director in the given container with the given name.
multivariateGaussian(ArrayToken, DoubleMatrixToken) - Static method in class ptolemy.data.expr.UtilityFunctions
Generate a sample from a multivariate Gaussian distribution.
multivariateGaussian(double[], double[][]) - Static method in class ptolemy.data.expr.UtilityFunctions
Generate a sample from a multivariate Gaussian distribution.
mUpperPanel - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
 
mUpperSplitPane - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
 
Mutate - Class in ptolemy.domains.de.lib.test
 
Mutate() - Constructor for class ptolemy.domains.de.lib.test.Mutate
 
mutate() - Method in class ptolemy.kernel.util.test.system.ChangeRequestTest
Mutate.
mutateBadChangeRequest() - Method in class ptolemy.kernel.util.test.system.ChangeRequestTest
Create a change request that always throws an exception.
mutateConst2ChangeRequest() - Method in class ptolemy.kernel.util.test.system.ChangeRequestTest
Create a change request that sets const to 2.0.
mutexLockObject() - Method in class ptolemy.actor.Director
Return the object to use to obtain a mutex lock on this director.
mutexLockObject() - Method in class ptolemy.domains.de.kernel.DEDirector
Return the object to use to obtain a mutex lock on this director.
mValue - Variable in class org.ecoinformatics.seek.querybuilder.DBTableFrame
 
mWhere - Variable in class org.ecoinformatics.seek.querybuilder.DBQueryDef
 
mWherePanel - Variable in class org.ecoinformatics.seek.querybuilder.QBSplitPaneAdvanced
 
MyByteArrayOutputStream(JTextArea, Tableau) - Constructor for class ptolemy.actor.gui.Console.ConsoleFrame.MyByteArrayOutputStream
Create an output stream.
myformat - Variable in class org.kepler.actor.DecimalFormatConverter
The parameter, which is a string for the designed format.
MySQL - Class in org.kepler.util.sql
An implementation of DatabaseType for MySQL.
MySQL() - Constructor for class org.kepler.util.sql.MySQL
Only this package (DatabaseFactory) can instantiate.
MyUserInfo() - Constructor for class org.geon.Scp.MyUserInfo
 
MyUserInfo() - Constructor for class org.sdm.spa.Ssh2Exec.MyUserInfo
 

N

n - Variable in class ptolemy.actor.lib.colt.ColtBinomial
n.
N - Variable in class ptolemy.actor.lib.colt.ColtHyperGeometric
N.
n - Variable in class ptolemy.actor.lib.colt.ColtHyperGeometric
coltLambda.
n - Variable in class ptolemy.actor.lib.colt.ColtNegativeBinomial
The mean, or n.
NAME - Static variable in class org.kepler.module.workflowschedulergui.Initialize
 
NAME - Static variable in class org.kepler.moml.NamedObjId
 
NAME - Static variable in class org.kepler.moml.NamedObjIdReferralList
 
name - Variable in class org.kepler.objectmanager.data.DataObjectDescription
 
name - Variable in class org.kepler.objectmanager.repository.Repository
 
name - Variable in class org.kepler.profiling.gui.ExecutionMonitorPanel.ActorInfo
The fully-qualified name of the actor (with no leading period.)
name - Variable in class org.kepler.reporting.rio.Item
 
name - Variable in class org.kepler.reporting.roml.ReportLayout
 
name - Variable in class org.mlc.swing.layout.ComponentDef
 
name - Variable in class org.sdm.spa.actors.io.DirectoryCreate
Input port representing the name of the file to create.
name - Variable in class org.sdm.spa.actors.piw.viz.TranscriptionFactorBindingSite
 
name - Variable in class org.sdm.spa.util.ActorInspector.AttributeInfo
 
name - Variable in class org.sdm.spa.util.ActorInspector.PortInfo
 
NAME - Static variable in interface ptolemy.data.expr.MatrixParserConstants
RegularExpression Id.
name - Variable in class ptolemy.vergil.kernel.attributes.IDAttribute
The name of the containing class or entity.
Nameable - Interface in ptolemy.kernel.util
This is an interface for objects with a name and a container.
NamedConstantsScope - Class in ptolemy.data.expr
An implementation of ParserScope that contains a map from names to value tokens.
NamedConstantsScope(Map) - Constructor for class ptolemy.data.expr.NamedConstantsScope
Construct a new scope that contains the given map from names to value tokens.
NamedList - Class in ptolemy.kernel.util
An ordered list of objects with names.
NamedList() - Constructor for class ptolemy.kernel.util.NamedList
Construct an empty NamedList with no container.
NamedList(Nameable) - Constructor for class ptolemy.kernel.util.NamedList
Construct an empty list with a Nameable container.
NamedList(NamedList) - Constructor for class ptolemy.kernel.util.NamedList
Copy constructor.
NamedObj - Class in ptolemy.kernel.util
This is a base class for almost all Ptolemy II objects.
NamedObj() - Constructor for class ptolemy.kernel.util.NamedObj
Construct an object in the default workspace with an empty string as its name.
NamedObj(String) - Constructor for class ptolemy.kernel.util.NamedObj
Construct an object in the default workspace with the given name.
NamedObj(Workspace) - Constructor for class ptolemy.kernel.util.NamedObj
Construct an object in the specified workspace with an empty string as its name.
NamedObj(Workspace, String) - Constructor for class ptolemy.kernel.util.NamedObj
Construct an object in the given workspace with the given name.
NamedObj(Workspace, String, boolean) - Constructor for class ptolemy.kernel.util.NamedObj
Construct an object in the given workspace with the given name.
NamedObj.ContainedObjectsIterator - Class in ptolemy.kernel.util
This class is an iterator over all the contained objects (all instances of NamedObj).
NamedObjClassesSeen - Class in ptolemy.moml.filter
Create a Set of classes that extend NamedObj that are in the MoML parsed thus far.
NamedObjClassesSeen(HashMap) - Constructor for class ptolemy.moml.filter.NamedObjClassesSeen
Create a filter that looks for classes that extend NamedObj.
NamedObjComparator() - Constructor for class ptolemy.actor.util.DFUtilities.NamedObjComparator
 
NamedObjController - Class in ptolemy.vergil.basic
This class extends LocatableNodeController with an association with a configuration.
NamedObjController(GraphController) - Constructor for class ptolemy.vergil.basic.NamedObjController
Create a node controller associated with the specified graph controller.
namedObjFlavor - Static variable in class ptolemy.vergil.toolbox.PtolemyTransferable
The flavor that requests a local virtual machine reference to the contained object.
NamedObjId - Class in org.kepler.moml
The NamedObjId is a StringAttribute to be used for identifying a NamedObj by a KeplerLSID.
NamedObjId() - Constructor for class org.kepler.moml.NamedObjId
Constructor
NamedObjId(NamedObj, String) - Constructor for class org.kepler.moml.NamedObjId
Constructor
NamedObjId(Workspace) - Constructor for class org.kepler.moml.NamedObjId
Constructor
NamedObjIdChangeRequest - Class in org.kepler.moml
 
NamedObjIdChangeRequest(Object, NamedObj, String) - Constructor for class org.kepler.moml.NamedObjIdChangeRequest
 
NamedObjIdReferralList - Class in org.kepler.moml
This StringAttribute holds a string of KeplerLSIDs separated by colons.
NamedObjIdReferralList() - Constructor for class org.kepler.moml.NamedObjIdReferralList
 
NamedObjIdReferralList(NamedObj, String) - Constructor for class org.kepler.moml.NamedObjIdReferralList
 
NamedObjNodeModel - Class in ptolemy.vergil.basic
A model for a Ptolemy II object as a node in a diva graph.
NamedObjNodeModel() - Constructor for class ptolemy.vergil.basic.NamedObjNodeModel
 
NamedOntClass - Class in org.kepler.sms
 
NamedOntClass(String, String) - Constructor for class org.kepler.sms.NamedOntClass
 
NamedOntClass(String) - Constructor for class org.kepler.sms.NamedOntClass
 
NamedOntClass(OWLClass, OWLOntology) - Constructor for class org.kepler.sms.NamedOntClass
 
NamedOntClass(NamedOntClass) - Constructor for class org.kepler.sms.NamedOntClass
 
NamedOntClass.IteratorIterable<T> - Class in org.kepler.sms
 
NamedOntClassTransferable - Class in org.kepler.sms.gui
A transferable object that contains a local JVM reference to a number of named objects.
NamedOntClassTransferable() - Constructor for class org.kepler.sms.gui.NamedOntClassTransferable
Create a new transferable object that contains no objects.
NamedOntModel - Class in org.kepler.sms
This class encapsulates/wraps an ontology model.
NamedOntModel(String) - Constructor for class org.kepler.sms.NamedOntModel
Creates a named ont model for the ontology given in filePath
NamedOntProperty - Class in org.kepler.sms
 
NamedOntProperty(OWLProperty, OWLOntology, NamedOntModel) - Constructor for class org.kepler.sms.NamedOntProperty
 
NameDuplicationException - Exception in ptolemy.kernel.util
Thrown on an attempt to add a named object to a collection that requires unique names, and finding that there already is an object by that name in the collection.
NameDuplicationException(Nameable, String) - Constructor for exception ptolemy.kernel.util.NameDuplicationException
Construct an exception with a detail message that includes the name of the first argument.
NameDuplicationException(Nameable, Nameable) - Constructor for exception ptolemy.kernel.util.NameDuplicationException
Construct an exception with a message that includes the name of the would be containee and the would be container.
NameDuplicationException(Nameable, Nameable, String) - Constructor for exception ptolemy.kernel.util.NameDuplicationException
Construct an exception with a detail message that includes the name of the would be containee and the would be container plus the third argument string.
NameIcon - Class in ptolemy.vergil.icon
An icon that displays the name of the container in an appropriately sized box.
NameIcon(NamedObj, String) - Constructor for class ptolemy.vergil.icon.NameIcon
Create a new icon with the given name in the given container.
nameIterator() - Static method in class ptolemy.math.Overflow
Return an iterator for the names of all overflow types.
nameIterator() - Static method in class ptolemy.math.Rounding
Return an iterator for the names of all overflow types.
NameParameter - Class in ptolemy.data.expr
This subclass of StringParameter uses its value to set the name of its container.
NameParameter(NamedObj, String) - Constructor for class ptolemy.data.expr.NameParameter
Construct a parameter with the given name contained by the specified entity.
names() - Method in class org.json.JSONObject
Produce a JSONArray containing the names of the elements of this JSONObject.
names() - Method in class org.kepler.provenance.RecordingParameters
Get all the names as a Collection.
nameSpace - Variable in class org.camera.service.Fastq2Fasta
Name space is a string that is added to the sequence description.
namespace - Variable in class org.ecoinformatics.seek.datasource.eml.eml2.EML2MetadataSpecification
 
NAMESPACE - Static variable in class org.ecoinformatics.seek.ecogrid.MetadataSpecificationInterface
Description of the Field
namespace - Variable in class org.ecoinformatics.seek.ecogrid.quicksearch.SearchQuery
 
NAMESPACE - Static variable in interface org.kepler.dataproxy.datasource.DataSourceInterface
 
namespace - Variable in class org.kepler.dataproxy.metadata.ADN.ADNMetadataSpecification
 
namespaceDefault - Static variable in class org.kepler.configuration.ConfigurationProperty
 
NamespaceException - Exception in org.kepler.configuration
exception for namepace errors
NamespaceException(String) - Constructor for exception org.kepler.configuration.NamespaceException
 
nameToFile(String, URI) - Static method in class ptolemy.util.FileUtilities
Given a file name or URL, construct a java.io.File object that refers to the file name or URL.
nameToType(String) - Static method in class ptolemy.data.expr.Constants
Given a name defining a type, return the type, or null if there is no such type.
nameToURL(String, URI, ClassLoader) - Static method in class ptolemy.util.FileUtilities
Given a file or URL name, return as a URL.
NameValuePair - Class in org.camera.service
The NameValuePair is a place holder for name value pairs.
NameValuePair(String, String) - Constructor for class org.camera.service.NameValuePair
 
NameValuePair - Class in org.kepler.actor.rest
The NameValuePair is a place holder for name value pairs.
NameValuePair(String, String) - Constructor for class org.kepler.actor.rest.NameValuePair
 
nanosecond - Variable in class ptolemy.actor.lib.DateConstructor
The nanoseconds.
nanosecond - Variable in class ptolemy.actor.lib.DateElements
Nanosecond of date received on input.
NARROW_LINE_GAP_ROWSPEC - Static variable in class com.jgoodies.forms.factories.FormFactory
Describes a logical vertical narrow gap between two rows in the grid.
NATIVE_CONVERSION - Static variable in class ptolemy.data.expr.CachedMethod
Conversion from tokens to Java native types.
NATIVE_LIBRARY - Static variable in class org.kepler.objectmanager.lsid.KeplerLSID
 
NATURAL - Static variable in interface ptolemy.data.expr.MatrixParserConstants
RegularExpression Id.
NATURALTYPE - Static variable in class org.kepler.objectmanager.data.DataType
 
ncols - Variable in class org.ecoinformatics.seek.gis.java_gis.Grid
 
ND_1 - Class in ptolemy.domains.pn.demo.QR
This class defines a PN actor object.
ND_1(CompositeEntity, String) - Constructor for class ptolemy.domains.pn.demo.QR.ND_1
Construct an actor that is an SBF object with the given container and name.
ND_2 - Class in ptolemy.domains.pn.demo.QR
This class defines a PN actor object.
ND_2(CompositeEntity, String) - Constructor for class ptolemy.domains.pn.demo.QR.ND_2
Construct an actor that is an SBF object with the given container and name.
ND_3 - Class in ptolemy.domains.pn.demo.QR
This class defines a PN actor object.
ND_3(CompositeEntity, String) - Constructor for class ptolemy.domains.pn.demo.QR.ND_3
Construct an actor that is an SBF object with the given container and name.
ND_4 - Class in ptolemy.domains.pn.demo.QR
This class defines a PN actor object.
ND_4(CompositeEntity, String) - Constructor for class ptolemy.domains.pn.demo.QR.ND_4
Construct an actor that is an SBF object with the given container and name.
ND_5 - Class in ptolemy.domains.pn.demo.QR
This class defines a PN actor object.
ND_5(CompositeEntity, String) - Constructor for class ptolemy.domains.pn.demo.QR.ND_5
Construct an actor that is an SBF object with the given container and name.
NEAREST - Static variable in class ptolemy.math.Rounding
Singleton implementing nearest rounding strategy.
needAbsolutePathForName() - Method in class org.kepler.util.sql.DatabaseType
Returns true if database name should be an absolute path in the file system.
needAbsolutePathForName() - Method in class org.kepler.util.sql.HSQL
Returns true if database name should be an absolute path in the file system.
needHostForConnect() - Method in class org.kepler.util.sql.DatabaseType
Returns true if need host name for connect.
needHostForConnect() - Method in class org.kepler.util.sql.HSQL
Returns true if need host name for connect.
needPasswordForConnect() - Method in class org.kepler.util.sql.DatabaseType
Returns true if need password for connect.
needPasswordForConnect() - Method in class org.kepler.util.sql.HSQL
Returns true if need password for connect.
needsReloading(TaggingContextManager) - Method in class org.kepler.tagging.TagReloadType
 
needsTaskCommit(TaskAttemptContext) - Method in class org.kepler.hadoop.io.output.TokenOutputFormat.TokenOutputCommitter
 
needsWidthInference() - Method in class ptolemy.actor.CompositeActor
Return whether the current widths of the relation in the model are no longer valid anymore and the widths need to be inferred again.
needsWidthInference() - Method in class ptolemy.actor.IORelation
Determine whether for this relation width inference needs to be performed.
needsWidthInference() - Method in class ptolemy.actor.RelationWidthInference
Return whether the current widths of the relation in the model are no longer valid anymore and the widths need to be inferred again.
needUserForConnect() - Method in class org.kepler.util.sql.DatabaseType
Returns true if need user name for connect.
needUserForConnect() - Method in class org.kepler.util.sql.HSQL
Returns true if need user name for connect.
negate() - Method in class ptolemy.data.SmoothToken
Return a new token that is the negative of this one.
negate() - Method in class ptolemy.math.Complex
Negate this complex number.
negate() - Method in class ptolemy.math.Fraction
Find the additive inverse of this fraction.
negative(Complex[]) - Static method in class ptolemy.math.ComplexArrayMath
Return a new array that is the formed from the additive inverse of each element of the input array (-array[i]).
negative(Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new matrix that is the additive inverse of the argument matrix.
negative(double[]) - Static method in class ptolemy.math.DoubleArrayMath
Return a new array that is the formed by the additive inverse of each element of the input array (-array[i]).
negative(double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new matrix that is the additive inverse of the argument matrix.
negative(float[]) - Static method in class ptolemy.math.FloatArrayMath
Return a new array that is the formed by the additive inverse of each element of the input array (-array[i]).
negative(float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Return a new matrix that is the additive inverse of the argument matrix.
negative(Fraction[]) - Static method in class ptolemy.math.FractionArrayMath
Return a new array that is the formed by the additive inverse of each element of the input array (-array[i]).
negative(Fraction[][]) - Static method in class ptolemy.math.FractionMatrixMath
Return a new matrix that is the additive inverse of the argument matrix.
negative(int[]) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array that is the formed by the additive inverse of each element of the input array (-array[i]).
negative(int[][]) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new matrix that is the additive inverse of the argument matrix.
negative(long[]) - Static method in class ptolemy.math.LongArrayMath
Return a new array that is the formed by the additive inverse of each element of the input array (-array[i]).
negative(long[][]) - Static method in class ptolemy.math.LongMatrixMath
Return a new matrix that is the additive inverse of the argument matrix.
NEGATIVE_INFINITY - Static variable in class ptolemy.actor.util.Time
A static and final time constant holding a negative infinity.
NEGATIVE_INFINITY - Static variable in class ptolemy.math.Complex
A Complex number representing negative infinity, by which we mean that both the real and imaginary parts are equal to Double.NEGATIVE_INFINITY.
NegativeLengthCycleAnalysis - Class in ptolemy.graph.analysis
Analysis to check if a cyclic directed graph has a negative-length cycle.
NegativeLengthCycleAnalysis(Graph, ToDoubleMapping) - Constructor for class ptolemy.graph.analysis.NegativeLengthCycleAnalysis
Construct an instance of this class using a default analyzer.
NegativeLengthCycleAnalysis(NegativeLengthCycleAnalyzer) - Constructor for class ptolemy.graph.analysis.NegativeLengthCycleAnalysis
Construct an instance of this class using a given analyzer.
NegativeLengthCycleAnalyzer - Interface in ptolemy.graph.analysis.analyzer
A common interface for all the negative length cycle analyzers.
NEGTIVEONE - Static variable in class org.kepler.workflowscheduler.gui.Schedule
 
neighborEdges(Node, Node) - Method in class ptolemy.graph.Graph
Return the collection of edges that make a node node2 a neighbor of a node node1.
neighbors(Node) - Method in class ptolemy.graph.Graph
Return all of the neighbors of a given node in the form of a a collection.
NestedScope - Class in ptolemy.data.expr
An implementation of ParserScope that consists of a list of nested scopes.
NestedScope(List) - Constructor for class ptolemy.data.expr.NestedScope
Construct a new scope that consists of the given list of scopes.
NetCDFReader - Class in org.kepler.data.netcdf
This actor reads values from a NetCDF file.
NetCDFReader(CompositeEntity, String) - Constructor for class org.kepler.data.netcdf.NetCDFReader
 
NetCDFWriter - Class in org.kepler.data.netcdf
This actor writes a single variable in a new NetCDF file.
NetCDFWriter(CompositeEntity, String) - Constructor for class org.kepler.data.netcdf.NetCDFWriter
Construct a new NetCDFWriter in a container with a name.
NEW_JMENUITEM_KEY - Static variable in class org.kepler.gui.MenuMapper
 
NewActorFrame - Class in org.kepler.gui
A component for editing Step information.
NewActorFrame(Component) - Constructor for class org.kepler.gui.NewActorFrame
Construct the editor dialog with the given Step.
newBrowserEffigy(CompositeEntity, URL, URL) - Static method in class ptolemy.actor.gui.BrowserEffigy
Create a new effigy in the given container by reading the specified URL.
newCoefficients - Variable in class ptolemy.domains.sdf.lib.VariableLattice
The input for new coefficient values.
newCoefficients - Variable in class ptolemy.domains.sdf.lib.VariableRecursiveLattice
The input for new coefficient values.
NewComponentDialog - Class in org.mlc.swing.layout
When performing drag-and-drop from the component palette to the table, this class is used to define or edit a component's settings.
NewComponentDialog(Window) - Constructor for class org.mlc.swing.layout.NewComponentDialog
Creates a new instance of NewComponentDialog
newComponents - Variable in class ptolemy.actor.gui.run.PtolemyFormEditor
The set of new components.
newExecutionChoice(String, String) - Method in class org.kepler.ddp.actor.ExecutionChoice
Create a new execution choice from a template.
newExecutionChoice(File, String) - Method in class org.kepler.ddp.actor.ExecutionChoice
Create a new execution choice from a file.
newFile - Variable in class org.resurgence.actor.FileCopier
The output port, which contains the new file path and name.
newFiles - Variable in class org.kepler.actor.io.SshDirectoryList
The output: array of new files since the previous read.
newFiles - Variable in class org.kepler.actor.io.SshDirectoryList_v1_1
The output: array of new files since the previous read.
newFilesOnly - Variable in class org.kepler.actor.io.SshDirectoryList
Specifying whether the output should contain only new files or all.
newFilesOnly - Variable in class org.kepler.actor.io.SshDirectoryList_v1_1
Specifying whether the output should contain only new files or all.
NewFolderFrame - Class in org.kepler.gui
A component for editing Step information.
NewFolderFrame(Component) - Constructor for class org.kepler.gui.NewFolderFrame
Construct the editor dialog with the given Step.
newInput(String, ExecutionChoice.IOType) - Method in class org.kepler.ddp.actor.ExecutionChoice
Create a new file input.
newInput(String, ExecutionChoice.IOType, String) - Method in class org.kepler.ddp.actor.ExecutionChoice
Create a new file input.
newInsideReceiver() - Method in class ptolemy.actor.CompositeActor
Return a new receiver of a type compatible with the local director.
newInstance(Figure) - Method in class ptolemy.vergil.kernel.ShadowHighlighter
Create a new instance of this shadower.
newInstance(Figure) - Method in class ptolemy.vergil.toolbox.AttributeBoundsManipulator
Create a new instance of this manipulator.
newInstance(Figure) - Method in class ptolemy.vergil.unit.BasicEdgeHighlighter
Create a new instance of this highlighter.
newline - Variable in class ptolemy.actor.lib.io.FileReader
The end of line character(s).
newOutput(String, ExecutionChoice.IOType) - Method in class org.kepler.ddp.actor.ExecutionChoice
Create a new file output.
newOutput(String, ExecutionChoice.IOType, String) - Method in class org.kepler.ddp.actor.ExecutionChoice
Create a new file output.
newParameter(String, String) - Method in class org.kepler.ddp.actor.ExecutionChoice
Add a new parameter.
newParameter(String, String, String) - Method in class org.kepler.ddp.actor.ExecutionChoice
Add a new parameter.
newParameter(String, String, String, String, ExecutionChoice.ParameterType) - Method in class org.kepler.ddp.actor.ExecutionChoice
Add a new parameter.
newParameterPort(String) - Method in class ptolemy.actor.lib.hoc.ReflectComposite
Create a new ParameterMirrorPort.
newPath - Variable in class org.srb.SProxy
New file path.
newPlot() - Method in interface ptolemy.actor.lib.gui.PlotterBaseInterface
Create a new instance of the PlotBoxInterface implementation.
newPlot() - Method in class ptolemy.actor.lib.gui.PlotterBaseJavaSE
Create a new instance of the PlotBoxInterface implementation.
newPlot() - Method in class ptolemy.plot.demo.PlotLiveDemoApplet
Create a new Plot object to operate on.
newPlot() - Method in class ptolemy.plot.HistogramApplet
Create a new Histogram object for the applet.
newPlot() - Method in class ptolemy.plot.PlotApplet
Create a new Plot object for the applet.
newPlot() - Method in class ptolemy.plot.plotml.EditablePlotMLApplet
Create a new Plot object for the applet.
newPlot() - Method in class ptolemy.plot.plotml.HistogramMLApplet
Create a new Plot object for the applet.
newPort(String) - Method in class ptolemy.actor.AtomicActor
Create a new IOPort with the specified name.
newPort(String) - Method in class ptolemy.actor.CompositeActor
Create a new IOPort with the specified name.
newPort(String) - Method in class ptolemy.actor.lib.Assert
Override the base class to create a specialized port.
newPort(String) - Method in class ptolemy.actor.lib.hoc.IterateOverArray.IterateComposite
Override the base class to return a specialized port.
newPort(String) - Method in class ptolemy.actor.lib.hoc.IterateOverArray
Override the base class to return a specialized port.
newPort(String) - Method in class ptolemy.actor.lib.hoc.MultiCompositeActor
Create a new port with the specified name in this entity and all the refinements.
newPort(String) - Method in class ptolemy.actor.lib.hoc.Refinement
Create a new port with the specified name in the container of this refinement, which in turn creates a port in this refinement all other refinements, and the controller.
newPort(String) - Method in class ptolemy.actor.lib.hoc.ReflectComposite
Override the base class to return a specialized port.
newPort(String) - Method in class ptolemy.actor.lib.hoc.ReflectComposite.ReflectCompositeContents
Override the base class to return a specialized port.
newPort(String) - Method in class ptolemy.actor.TypedAtomicActor
Create a new TypedIOPort with the specified name.
newPort(String) - Method in class ptolemy.actor.TypedCompositeActor
Create a new TypedIOPort with the specified name.
newPort(String) - Method in class ptolemy.actor.TypeOpaqueCompositeActor
Create a new TypedIOPort with the specified name.
newPort(String) - Method in class ptolemy.component.AtomicComponent
Create a new port with the specified name.
newPort(String) - Method in class ptolemy.domains.modal.kernel.FSMActor
Create a new TypedIOPort with the specified name.
newPort(String) - Method in class ptolemy.domains.modal.modal.ModalController
Create a new port with the specified name in the container of this controller, which in turn creates a port in this controller and all the refinements.
newPort(String) - Method in class ptolemy.domains.modal.modal.ModalModel
Create a new port with the specified name in this entity, the controller, and all the refinements.
newPort(String) - Method in class ptolemy.domains.modal.modal.ModalRefinement
Create a new port with the specified name in the container of this controller, which in turn creates a port in this controller and all the refinements.
newPort(String) - Method in class ptolemy.domains.modal.modal.Refinement
Create a new port with the specified name in the container of this refinement, which in turn creates a port in this refinement all other refinements, and the controller.
newPort(String) - Method in class ptolemy.domains.modal.modal.TransitionRefinement
Create a new port with the specified name in the container of this refinement, which in turn creates a port in this refinement all other refinements, and the controller.
newPort(String) - Method in class ptolemy.kernel.ComponentEntity
Create a new port with the specified name.
newPort(String) - Method in class ptolemy.kernel.Entity
Create a new port with the specified name.
NewPortAction(IOPort, String, int) - Constructor for class ptolemy.vergil.basic.WithIconGraphController.NewPortAction
Create a new port that has the same input, output, and multiport properties as the specified port.
NewPortAction(IOPort, String, int, String[][]) - Constructor for class ptolemy.vergil.basic.WithIconGraphController.NewPortAction
Create a new port that has the same input, output, and multiport properties as the specified port and has icons associated with being unselected, rollover, rollover selected, and selected.
newQBEffigy(CompositeEntity) - Static method in class org.kepler.objectmanager.data.db.QBEffigy
Create a new effigy in the given container containing the specified text.
newReceiver() - Method in interface ptolemy.actor.Actor
Return a new receiver of a type compatible with the executive director.
newReceiver() - Method in class ptolemy.actor.AtomicActor
Return a new receiver of a type compatible with the director.
newReceiver() - Method in class ptolemy.actor.CompositeActor
Return a new receiver of a type compatible with the executive director.
newReceiver() - Method in class ptolemy.actor.Director
Return a new receiver of a type compatible with this director.
newReceiver() - Method in class ptolemy.actor.lib.hoc.CaseDirector
Return a receiver that is a one-place buffer.
newReceiver() - Method in class ptolemy.actor.process.CompositeProcessDirector
Return a new receiver of a type compatible with this director.
newReceiver() - Method in class ptolemy.actor.sched.FixedPointDirector
Return a new FixedPointReceiver.
newReceiver() - Method in class ptolemy.domains.ddf.kernel.DDFDirector
Return a new QueueReceiver.
newReceiver() - Method in class ptolemy.domains.de.kernel.DEDirector
Return a new receiver of the type DEReceiver.
newReceiver() - Method in class ptolemy.domains.modal.kernel.FSMActor
Return a new receiver obtained from the director.
newReceiver() - Method in class ptolemy.domains.modal.kernel.FSMDirector
Return a receiver that is a one-place buffer.
newReceiver() - Method in class ptolemy.domains.modal.kernel.MultirateFSMDirector
Return a new receiver of a type compatible with this director.
newReceiver() - Method in class ptolemy.domains.pn.kernel.PNDirector
Return a new receiver compatible with this director.
newReceiver() - Method in class ptolemy.domains.sdf.kernel.SDFDirector
Return a new receiver consistent with the SDF domain.
newRefinement(String) - Method in class ptolemy.actor.lib.hoc.Case
Create a new refinement with the specified name.
newRelation(String) - Method in class ptolemy.actor.CompositeActor
Create a new IORelation with the specified name, add it to the relation list, and return it.
newRelation(String) - Method in class ptolemy.actor.LazyTypedCompositeActor
Create a new relation with the specified name, add it to the relation list, and return it.
newRelation(String) - Method in class ptolemy.actor.TypedCompositeActor
Create a new TypedIORelation with the specified name, add it to the relation list, and return it.
newRelation(String) - Method in class ptolemy.domains.modal.kernel.FSMActor
Create a new instance of Transition with the specified name in this actor, and return it.
newRelation(String) - Method in class ptolemy.domains.modal.kernel.ia.InterfaceAutomaton
Create a new instance of InterfaceAutomatonTransition with the specified name in this actor, and return it.
newRelation(String) - Method in class ptolemy.kernel.CompositeEntity
Create a new relation with the specified name, add it to the relation list, and return it.
NewRelationAction() - Constructor for class ptolemy.vergil.actor.ActorEditorGraphController.NewRelationAction
Create an action that creates a new relation.
NewRelationAction(String[][]) - Constructor for class ptolemy.vergil.actor.ActorEditorGraphController.NewRelationAction
Create an action that creates a new relation.
NewStateAction() - Constructor for class ptolemy.vergil.modal.FSMGraphController.NewStateAction
Construct a new state.
newTaps - Variable in class ptolemy.domains.sdf.lib.VariableFIR
The input for new tap values.
newTextEffigy(CompositeEntity, String) - Static method in class ptolemy.actor.gui.ExternalTextEffigy
Create a new effigy in the given container containing the specified text.
newTextEffigy(CompositeEntity, URL, URL) - Static method in class ptolemy.actor.gui.ExternalTextEffigy
Create a new ExternalTextEffigy.
newTextEffigy(CompositeEntity, String) - Static method in class ptolemy.actor.gui.TextEffigy
Create a new effigy in the given container containing the specified text.
newTextEffigy(CompositeEntity, String, String) - Static method in class ptolemy.actor.gui.TextEffigy
Create a new effigy in the given container containing the specified text.
newTextEffigy(CompositeEntity, URL, URL) - Static method in class ptolemy.actor.gui.TextEffigy
Create a new effigy in the given container by reading the specified URL.
newToken(int, String) - Static method in class ptolemy.data.expr.Token
Returns a new Token object, by default.
newToken(int) - Static method in class ptolemy.data.expr.Token
 
newToken(int, String) - Static method in class ptolemy.moml.unit.Token
Returns a new Token object, by default.
newToken(int) - Static method in class ptolemy.moml.unit.Token
 
newUnitArrayInCategory(int) - Static method in class ptolemy.data.unit.UnitUtilities
Return a new units array that has the element at the given index set to one.
newvalParameter - Variable in class org.ecoinformatics.seek.gis.java_gis.GridReset
The new value of pixels in the (minval,maxval) range.
next() - Method in class org.json.JSONTokener
Get the next character in the source string.
next(char) - Method in class org.json.JSONTokener
Consume the next character, and check that it matches a specified character.
next(int) - Method in class org.json.JSONTokener
Get the next n characters.
next - Variable in class ptolemy.actor.gui.properties.ComboBox.Item
The name of the next item in the same combo box to be selected when this GUI property is selected, or an empty string if there is no next item.
next() - Method in class ptolemy.actor.LazyTypedCompositeActor.ContainedObjectsIterator
Return the next element in the iteration.
next - Variable in class ptolemy.data.expr.Token
A reference to the next regular (non-special) token from the input stream.
next() - Method in class ptolemy.kernel.CompositeEntity.ContainedObjectsIterator
Return the next element in the iteration.
next() - Method in class ptolemy.kernel.Entity.ContainedObjectsIterator
Return the next element in the iteration.
next() - Method in class ptolemy.kernel.util.NamedObj.ContainedObjectsIterator
Return the next element in the iteration.
next - Variable in class ptolemy.moml.unit.Token
A reference to the next regular (non-special) token from the input stream.
nextCDATA() - Method in class org.json.XMLTokener
Get the text in the CDATA block.
nextClean() - Method in class org.json.JSONTokener
Get the next char in the string, skipping whitespace.
nextColumn() - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Moves to the next column, does the same as #nextColumn(1).
nextColumn(int) - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Moves to the next column.
nextContent() - Method in class org.json.XMLTokener
Get the next XML outer token, trimming whitespace.
nextDiagram - Variable in class org.geon.Diagrams
A reference to the diagram to be processed.
NextDiagram - Class in org.geon
This is a domain specific actor used within the GEON mineral classification workflow for choosing the next iteration's diagram.
NextDiagram(CompositeEntity, String) - Constructor for class org.geon.NextDiagram
 
nextDiagram - Variable in class org.geon.NextDiagram
 
nextEntity(char) - Method in class org.json.XMLTokener
Return the next entity.
nextExecLSIDStr - Static variable in class org.kepler.provenance.sql.SQLRecordingV8.SQLRecordingParametersV8
Name of next execution LSID parameter.
nextKeyValue() - Method in class org.kepler.bio.hadoop.input.FASTARecordReader
 
nextKeyValue() - Method in class org.kepler.hadoop.io.input.DelimitedTextRecordReader
 
nextKeyValue() - Method in class org.kepler.hadoop.io.input.DuplicatedTextRecordReader
 
nextKeyValue() - Method in class org.kepler.hadoop.io.input.FileContentRecordReader
 
nextKeyValue() - Method in class org.kepler.hadoop.io.input.FilePathRecordReader
 
nextKeyValue() - Method in class org.kepler.hadoop.io.input.MultiLineRecordReader
 
nextKeyValue() - Method in class org.kepler.hadoop.io.input.TokenRecordReader
If another key value can be read, returns true.
nextLine() - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Moves to the next line: increases the row and resets the column; does the same as #nextLine(1).
nextLine(int) - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Moves the cursor down several lines: increases the row by the specified number of lines and sets the cursor to the leading column.
nextMeta() - Method in class org.json.XMLTokener
Returns the next XML meta token.
nextPowerOfTwo(double) - Static method in class ptolemy.math.SignalProcessing
Return the next power of two larger than the argument.
nextRecord(Record) - Method in class org.kepler.bio.stratosphere.input.FASTAInputFormat
 
nextRecord(Record) - Method in class org.kepler.bio.stratosphere.input.FASTAInputFormatBySize
 
nextRecord(Record) - Method in class org.kepler.stratosphere.io.input.DataFileInputFormat
 
nextRecord(Record) - Method in class org.kepler.stratosphere.io.input.TokenInputFormat
Populate a Record with the token from the split.
nextRow() - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Increases the row by one; does the same as #nextRow(1).
nextRow(int) - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Increases the row by the specified rows.
nextString(char) - Method in class org.json.JSONTokener
Return the characters up to the next close quote character.
nextTo(char) - Method in class org.json.JSONTokener
Get the text up but not including the specified character or the end of line, whichever comes first.
nextTo(String) - Method in class org.json.JSONTokener
Get the text up but not including one of the specified delimiter characters or the end of line, whichever comes first.
nextToken() - Method in class org.json.HTTPTokener
Get the next token or string.
nextToken() - Method in class org.json.XMLTokener
Get the next XML Token.
nextValue() - Method in class org.json.JSONTokener
Get the next value.
NexusFileReader - Class in org.cipres.kepler
The NexusFileReader actor reads a Nexus file from the local file system and sends the file content as a string token.
NexusFileReader(CompositeEntity, String) - Constructor for class org.cipres.kepler.NexusFileReader
Construct a NexusFileReader actor with the given container and name.
NIL - Static variable in class ptolemy.data.ArrayToken
A token that represents a missing value.
NIL - Static variable in class ptolemy.data.BooleanToken
A token that represents a missing value.
NIL - Static variable in class ptolemy.data.ComplexToken
A token that represents a missing value.
NIL - Static variable in class ptolemy.data.DateToken
A token that represents a missing value.
NIL - Static variable in class ptolemy.data.DoubleToken
A token that represents a missing value.
NIL - Static variable in class ptolemy.data.FloatToken
A token that represents a missing value.
NIL - Static variable in class ptolemy.data.IntToken
A token that represents a missing value.
NIL - Static variable in class ptolemy.data.LongToken
A token that represents a missing value.
NIL - Static variable in class ptolemy.data.ShortToken
A token that represents a missing value.
NIL - Static variable in class ptolemy.data.SmoothToken
A token that represents a missing value.
NIL - Static variable in class ptolemy.data.StringToken
A token that represents a missing value.
NIL - Static variable in class ptolemy.data.Token
A token that represents a missing value.
NIL - Static variable in class ptolemy.data.type.BaseType
The nil data type.
NIL - Static variable in class ptolemy.data.UnsignedByteToken
A token that represents a missing value.
nilArrayConstruct() - Method in class ptolemy.data.expr.PtParser
 
nInstances - Variable in class ptolemy.actor.lib.hoc.MultiInstanceComposite
The total number of instances to instantiate including instance 0 (the master copy).
nl - Static variable in class org.kepler.kar.karxml.KarXmlGenerator
 
NO_CHANGE - Static variable in class org.kepler.tagging.Range
 
NO_GROW - Static variable in class com.jgoodies.forms.layout.FormSpec
Gives a column or row a fixed size.
NO_METADATA - Static variable in class org.kepler.dataproxy.datasource.opendap.OpendapDataSource
 
NO_NAME - Static variable in class org.ecoinformatics.seek.querybuilder.DBUIUtils
 
NO_QUALITY_SCORE - Static variable in class org.kepler.monitor.MonitoredStatus.State
 
NO_QUERY_NODE - Static variable in class org.ecoinformatics.seek.querybuilder.DBQueryDefParserEmitter
the XML was missing a "query" element
NODATA_value_String - Static variable in class org.ecoinformatics.seek.gis.java_gis.Grid
 
Node(double, int) - Constructor for class ptolemy.actor.lib.comm.HuffmanBasic.Node
Construct the node with the given probability value and its index in the pmf array.
Node(HuffmanBasic.Node, HuffmanBasic.Node) - Constructor for class ptolemy.actor.lib.comm.HuffmanBasic.Node
Construct the parent node given the left child and the right child.
Node - Interface in ptolemy.data.expr
 
node(Object) - Method in class ptolemy.graph.Graph
Return a node in this graph that has a specified weight.
node(int) - Method in class ptolemy.graph.Graph
Return a node in this graph given the node label.
Node - Class in ptolemy.graph
An optionally-weighted node for an undirected or directed graph.
Node() - Constructor for class ptolemy.graph.Node
Construct an unweighted node.
Node(Object) - Constructor for class ptolemy.graph.Node
Construct a node with a given node weight.
nodeArity() - Method in class ptolemy.data.expr.JJTMatrixParserState
 
nodeArity() - Method in class ptolemy.data.expr.JJTPtParserState
 
NodeControllerFactory - Class in ptolemy.vergil.basic
This is an attribute that produces a custom node controller.
NodeControllerFactory(NamedObj, String) - Constructor for class ptolemy.vergil.basic.NodeControllerFactory
Construct a new attribute with the given container and name.
nodeCount() - Method in class ptolemy.graph.Graph
Return the total number of nodes in this graph.
nodeCreated() - Method in class ptolemy.data.expr.JJTMatrixParserState
 
nodeCreated() - Method in class ptolemy.data.expr.JJTPtParserState
 
nodeLabel(Node) - Method in class ptolemy.graph.Graph
Return the node label of the specified node.
nodeLabel(Object) - Method in class ptolemy.graph.Graph
Return the node label of the specified node given the node weight.
nodeName() - Method in exception ptolemy.data.expr.UndefinedConstantOrIdentifierException
Return the node name that caused the exception.
nodes() - Method in interface ptolemy.graph.analysis.analyzer.SinkNodeAnalyzer
Return the sink nodes in the graph under analysis.
nodes() - Method in interface ptolemy.graph.analysis.analyzer.SourceNodeAnalyzer
Return the source nodes in the graph under analysis.
nodes() - Method in class ptolemy.graph.analysis.SinkNodeAnalysis
Return the sink nodes in the graph under analysis.
nodes() - Method in class ptolemy.graph.analysis.SourceNodeAnalysis
Return the source nodes in the graph under analysis.
nodes() - Method in class ptolemy.graph.analysis.strategy.SinkNodeStrategy
Compute the sink nodes in the graph in the form of a collection.
nodes() - Method in class ptolemy.graph.analysis.strategy.SourceNodeStrategy
Compute the source nodes in the graph in the form of a collection.
nodes() - Method in class ptolemy.graph.Graph
Return all the nodes in this graph in the form of a collection.
nodes(Object) - Method in class ptolemy.graph.Graph
Return all the nodes in this graph that have a specified weight.
nodes(Collection) - Method in class ptolemy.graph.Graph
Return the collection of nodes in this graph whose weights are contained in a specified collection.
nodes(Object) - Method in class ptolemy.vergil.actor.ActorGraphModel.IconModel
Provide an iterator over the nodes in the given graph or composite node.
nodes(Object) - Method in class ptolemy.vergil.kernel.CompositePtolemyModel
Return an iterator over all the nodes contained in the graph for the specified composite.
nodesAfterEdges(Object) - Method in class ptolemy.vergil.actor.ActorGraphModel.IconModel
Provide an iterator over the nodes that should be rendered after to the edges.
nodesAfterEdges(Object) - Method in class ptolemy.vergil.kernel.CompositePtolemyModel
Return an iterator over the nodes that should be rendered after to the edges.
nodesBeforeEdges(Object) - Method in class ptolemy.vergil.actor.ActorGraphModel.IconModel
Provide an iterator over the nodes that should be rendered prior to the edges.
nodesBeforeEdges(Object) - Method in class ptolemy.vergil.kernel.CompositePtolemyModel
Return an iterator over the nodes that should be rendered prior to the edges.
nodeToString(Node) - Static method in class org.kepler.kar.karxml.KarXml
 
nodeWeight(int) - Method in class ptolemy.graph.Graph
Return the weight of a given node in the graph given the node label.
Noise - Class in ptolemy.domains.continuous.kernel
This actor generates continuous-time noise with a Gaussian distribution.
Noise(CompositeEntity, String) - Constructor for class ptolemy.domains.continuous.kernel.Noise
Construct an actor with the given container and name.
Noise - Class in ptolemy.domains.continuous.lib
This actor generates continuous-time noise with a Gaussian distribution.
Noise(CompositeEntity, String) - Constructor for class ptolemy.domains.continuous.lib.Noise
Construct an actor with the given container and name.
NoLiidLibraryPopup - Class in org.kepler.gui.popups
A class for organizing popup menus in the Library.
NoLiidLibraryPopup() - Constructor for class org.kepler.gui.popups.NoLiidLibraryPopup
 
NoLiidLibraryPopup(TreePath, Component) - Constructor for class org.kepler.gui.popups.NoLiidLibraryPopup
 
NoLiidLibraryPopup(TreePath, PtolemyFrame) - Constructor for class org.kepler.gui.popups.NoLiidLibraryPopup
 
NoMatchHandler - Class in org.kepler.webview.server.handler
 
NoMatchHandler(WebViewServer) - Constructor for class org.kepler.webview.server.handler.NoMatchHandler
 
NoMetadataSpecificationClassException - Exception in org.ecoinformatics.seek.ecogrid.exception
Title: NoMetadataSpecificationClassException Description: a exception for couldn't find metadata specification class for a namepsace in config file Copyright: Copyright (c) 2004 Company:
NoMetadataSpecificationClassException(String) - Constructor for exception org.ecoinformatics.seek.ecogrid.exception.NoMetadataSpecificationClassException
 
NONAME_INX - Static variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIStd
 
NonComboBoxTest - Class in org.kepler.tagging.gui
Created by IntelliJ IDEA.
NonComboBoxTest(TableauFrame) - Constructor for class org.kepler.tagging.gui.NonComboBoxTest
 
NonComboBoxTest() - Constructor for class org.kepler.tagging.gui.NonComboBoxTest
 
nondeterministic - Variable in class ptolemy.domains.modal.kernel.Transition
Parameter specifying whether this transition is nondeterministic.
NondeterministicMerge - Class in ptolemy.domains.pn.kernel
This actor takes any number of input streams and merges them nondeterministically.
NondeterministicMerge(CompositeEntity, String) - Constructor for class ptolemy.domains.pn.kernel.NondeterministicMerge
Construct an actor in the specified container with the specified name.
NondeterministicMerge(Workspace) - Constructor for class ptolemy.domains.pn.kernel.NondeterministicMerge
Construct a TypedCompositeActor in the specified workspace with no container and an empty string as a name.
NondraggableTreeItem(String) - Constructor for class org.kepler.objectmanager.repository.EcogridRepositoryLibrarySearcher.NondraggableTreeItem
 
NONE - Static variable in interface ptolemy.kernel.util.Settable
Indicator that a user interface should not make an instance visible.
NoneAuth - Class in org.kepler.webview.server.auth
AuthProvider implementation that succeeds for any username and password.
NoneAuth() - Constructor for class org.kepler.webview.server.auth.NoneAuth
 
nonErrorNonTerminationTransitionList() - Method in class ptolemy.domains.modal.kernel.State
Return the list of outgoing transitions from this state that are neither error nor termination transitions.
NoneUser - Class in org.kepler.webview.server.auth
 
NoneUser() - Constructor for class org.kepler.webview.server.auth.NoneUser
 
NoneUser(String, String) - Constructor for class org.kepler.webview.server.auth.NoneUser
 
noNewActors() - Method in class ptolemy.actor.lib.SynchronizeToRealTime
This class does not create change request for new actor in proposeTime.
noNewActors() - Method in interface ptolemy.actor.TimeRegulator
Return false if change requests have been posted while during the call to proposeTime.
NonGuiClass - Class in org.kepler.tagging
Created by IntelliJ IDEA.
NonGuiClass() - Constructor for class org.kepler.tagging.NonGuiClass
 
NonInterruptibleTimer - Class in ptolemy.domains.de.lib
Deprecated.
Use ptolemy.actor.lib.ResettableTimer.
NonInterruptibleTimer(CompositeEntity, String) - Constructor for class ptolemy.domains.de.lib.NonInterruptibleTimer
Deprecated.
Construct an actor with the specified container and name.
NonLatticeCounterExample - Class in ptolemy.graph
A data structure that provides counterexample information when a graph is tested to see if it is a lattice.
NonLatticeCounterExample(NonLatticeCounterExample.ExampleType) - Constructor for class ptolemy.graph.NonLatticeCounterExample
Construct a NonLatticeCounterExample object with the given example type.
NonLatticeCounterExample(NonLatticeCounterExample.ExampleType, List) - Constructor for class ptolemy.graph.NonLatticeCounterExample
Construct a NonLatticeCounterExample object with the given example type and list of nodes in the graph.
NonLatticeCounterExample(Object) - Constructor for class ptolemy.graph.NonLatticeCounterExample
Construct a NonLatticeCounterExample object for a graph with a cycle.
NonLatticeCounterExample(CPO.BoundType, Object, Object) - Constructor for class ptolemy.graph.NonLatticeCounterExample
Construct a NonLatticeCounterExample object for a pair of nodes that have either no least upper or greatest lower bound.
NonLatticeCounterExample.ExampleType - Interface in ptolemy.graph
Marker interface for the counter example type.
NonLatticeCounterExample.GraphExampleType - Enum in ptolemy.graph
An enumeration type to represent the types of counterexamples that can be found when checking to see if a graph is a lattice.
nonLatticeReason() - Method in class ptolemy.graph.DirectedAcyclicGraph
Return a counterexample reason as to why this graph is not a lattice.
nonnegative - Variable in class ptolemy.domains.de.lib.TimeCompare
A boolean parameter to decide whether inputs at input2 should be ignored if they lead to negative outputs.
nonpreemptiveTransitionList() - Method in class ptolemy.domains.modal.kernel.State
Return the list of non-preemptive outgoing transitions from this state.
NonResponseTreePath - Class in org.kepler.workflowscheduler.gui
A special tree path object which can be differential from TreePath object
NonResponseTreePath(TreePath) - Constructor for class org.kepler.workflowscheduler.gui.NonResponseTreePath
Constructor
NonSelectableTreeSelectionModel() - Constructor for class org.kepler.workflowscheduler.gui.ScheduleChangeController.NonSelectableTreeSelectionModel
 
NonStrictFSMDirector - Class in ptolemy.domains.modal.kernel
This director extends FSMDirector by consuming only input tokens that are needed in the current state.
NonStrictFSMDirector(CompositeEntity, String) - Constructor for class ptolemy.domains.modal.kernel.NonStrictFSMDirector
Construct a director in the given container with the given name.
NonStrictTest - Class in ptolemy.actor.lib
This actor compares the inputs against the value specified by the correctValues parameter.
NonStrictTest(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.NonStrictTest
Construct an actor with an input multiport.
NOREPORTWARNING - Static variable in class org.kepler.workflowscheduler.gui.SchedulerAbstractAction
 
NORMAL - Static variable in exception org.kepler.authentication.AuthenticationException
set this type if the exception is normal. this is the default.
NORMAL_ICON_STR - Static variable in class org.kepler.tagging.gui.TagAddAction
 
normalize(double[]) - Static method in class ptolemy.math.DoubleArrayMath
Return a new array that is formed by scaling the array so that it has a L2-norm of 1.
normalize(float[]) - Static method in class ptolemy.math.FloatArrayMath
Return a new array that is formed by scaling the array so that it has a L2-norm of 1.
NoRoomException - Exception in ptolemy.actor
This exception is thrown when an attempt is made to put a token into a receiver that does not have room to accommodate one.
NoRoomException(String) - Constructor for exception ptolemy.actor.NoRoomException
Construct an exception with the given error message.
NoRoomException(Nameable, String) - Constructor for exception ptolemy.actor.NoRoomException
Construct an exception originating from the given object, with the given error message.
NORTH - Static variable in class org.kepler.reporting.rio.ItemLabel
 
NoSearchEndPointException - Exception in org.ecoinformatics.seek.ecogrid.exception
Title: NoSearchEndPointException Description: Exception for no url to search Copyright: Copyright (c) 2004 Company: UCSB
NoSearchEndPointException(String) - Constructor for exception org.ecoinformatics.seek.ecogrid.exception.NoSearchEndPointException
 
NOSPACE - Static variable in class org.camera.service.ServiceUtils
 
noSpace(String) - Static method in class org.json.XML
Throw an exception if the string contains whitespace.
NOSPACE - Static variable in class org.kepler.actor.rest.ServiceUtils
 
NoSuchItemException - Exception in ptolemy.kernel.util
Thrown on access (by name) to an item that doesn't exist.
NoSuchItemException(String) - Constructor for exception ptolemy.kernel.util.NoSuchItemException
Construct an exception with a detail message.
NoSuchItemException(Nameable, String) - Constructor for exception ptolemy.kernel.util.NoSuchItemException
Construct an exception with a detail message that includes the name of the argument.
NoSuchItemException(Nameable, Throwable, String) - Constructor for exception ptolemy.kernel.util.NoSuchItemException
Construct an exception with a cause and a detail message that includes the name of the argument.
not() - Method in class ptolemy.data.BooleanToken
Return a new BooleanToken with the logical not of the value stored in this token.
NOT_EDITABLE - Static variable in interface ptolemy.kernel.util.Settable
Indicator that a user interface should make an instance visible, but not allow editing of the variable.
NOT_ENABLED - Static variable in class ptolemy.domains.ddf.kernel.ActorEnablingStatus
This final static member indicates an actor is not enabled.
NOT_READY - Static variable in interface ptolemy.actor.Executable
An indicator that the iterate() method did not complete because the actor was not ready (prefire() returned false).
note - Variable in class ptolemy.actor.gui.style.NoteStyle
The note to display.
NOTE3NOENGINE - Static variable in class org.kepler.workflowscheduler.gui.WorkflowSchedulerServerInstallationInfoPanel
 
NOTE3NOSCHEDULER - Static variable in class org.kepler.workflowscheduler.gui.WorkflowSchedulerServerInstallationInfoPanel
 
NotEditableLineStyle - Class in ptolemy.actor.gui.style
This attribute annotates user settable attributes to specify a version of the line style which is fixed and not editable.
NotEditableLineStyle() - Constructor for class ptolemy.actor.gui.style.NotEditableLineStyle
Construct an attribute in the default workspace with an empty string as its name.
NotEditableLineStyle(Workspace) - Constructor for class ptolemy.actor.gui.style.NotEditableLineStyle
Construct an attribute in the given workspace with an empty string as its name.
NotEditableLineStyle(NamedObj, String) - Constructor for class ptolemy.actor.gui.style.NotEditableLineStyle
Construct an attribute with the specified container and name.
NOTEQUALS - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
NOTEQUALS_INX - Static variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIStd
 
NoteStyle - Class in ptolemy.actor.gui.style
This attribute displays a note instead of a parameter value.
NoteStyle(NamedObj, String) - Constructor for class ptolemy.actor.gui.style.NoteStyle
Construct an attribute with the specified container and name.
notFound - Variable in class ptolemy.actor.lib.Dictionary
An output listing one or more keys that were requested but not found in the dictionary.
Notification(String) - Constructor for class ptolemy.kernel.util.test.TestWorkspace2.Notification
 
notifyConnectivityChange() - Method in class ptolemy.actor.CompositeActor
Notify the manager that the connectivity in the model changed (width of relation changed, relations added, linked to different ports, ...).
notifyConnectivityChange() - Method in class ptolemy.actor.RelationWidthInference
Notify the width inference algorithm that the connectivity in the model changed (width of relation changed, relations added, linked to different ports, ...).
notifyDeletionListeners() - Method in class org.kepler.plotting.Row
 
notifyDragOver(int, int) - Method in class org.kepler.gui.AnnotatedPTree
notify this tree that the mouse is dragging an object over the x,y position
notifyExecutionListeners(NamedObj, Double, ExecutionAspectListener.ExecutionEventType) - Method in interface ptolemy.actor.ActorExecutionAspect
Notify execution listeners about rescheduling events.
notifyFieldChanged() - Method in interface org.ecoinformatics.seek.querybuilder.DBSelectTableFieldChangedListener
Simple method for notifying something changed
notifyFieldChanged() - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableOverviewTable
When notified, it makes everything as dirty for an visual update
notifyFieldChanged() - Method in class org.ecoinformatics.seek.querybuilder.DBTableDesktopPane
Makes everything "dirty" and forces an update.
notifyListeners(ConfigurationProperty) - Method in class org.kepler.configuration.ConfigurationManager
notify any listeners that a configuration event has occured
notifyListeners(String) - Method in class org.kepler.gui.TreeAction
notify any listeners that a new folder has been created.
notifyListeners() - Method in class org.kepler.objectmanager.cache.DataCacheObject
Notifies the listener that the "getting" of the data has completed
notifyListeners(SshEvent) - Method in class org.kepler.ssh.SshEventRegistry
Send a SshEvent to all listeners.
notifyListeners() - Method in class ptolemy.gui.Query
Notify listeners of the current value of all entries, unless those entries have not changed since the last notification.
notifyListenersOfException(Exception) - Method in class ptolemy.actor.Manager
Notify all the execution listeners of an exception.
notifyListenersOfThrowable(Throwable) - Method in class ptolemy.actor.Manager
Notify all the execution listeners of a Throwable.
notifyOfNameChange(NamedObj) - Method in class ptolemy.actor.lib.RecordAssembler
React to a name change of contained ports.
notifyOfNameChange(NamedObj) - Method in class ptolemy.actor.lib.RecordDisassembler
React to a name change of contained ports.
notifyOfNameChange(NamedObj) - Method in class ptolemy.actor.lib.UnionDisassembler
React to a name change of contained ports.
notifyOfNameChange(NamedObj) - Method in class ptolemy.actor.lib.UnionMerge
React to a name change of contained ports.
notifyOfNameChange(NamedObj) - Method in class ptolemy.kernel.util.NamedObj
React to a change in a contained named object.
notifySelectionListeners(OntologyDisplaySelectionEvent) - Method in class org.kepler.tagging.gui.OntologyDisplayUI
 
notifyStateChange(StateChangeEvent) - Method in class org.kepler.gui.state.StateChangeMonitor
Notify the monitor of an application state change so that it in turn can notify all of the registered listeners of that state change.
NotifyThread - Class in ptolemy.actor.process
Helper thread for calling notifyAll() on a single lock or a LinkedList of locks.
NotifyThread(LinkedList) - Constructor for class ptolemy.actor.process.NotifyThread
Construct a thread to be used call notifyAll() on a set of locks.
NotifyThread(Object) - Constructor for class ptolemy.actor.process.NotifyThread
Construct a thread to be used call notifyAll() on a set of locks.
notifyTokenSentToCommunicationAspect() - Method in class ptolemy.actor.Director
Notify this director that a token was sent to a communication aspect.
notifyWorkflowRenameListeners(ComponentEntity, String, String, KeplerLSID, KeplerLSID) - Static method in class org.kepler.util.RenameUtil
 
NOTNULLCONSTRAINT - Static variable in interface org.kepler.objectmanager.data.db.Constraint
 
NotNullConstraint - Class in org.kepler.objectmanager.data.db
This class represents no null constraint in column level
NotNullConstraint() - Constructor for class org.kepler.objectmanager.data.db.NotNullConstraint
Default constructor
NOTNULLSTRING - Static variable in interface org.kepler.objectmanager.data.db.Constraint
 
NoTokenException - Exception in ptolemy.actor
This exception is thrown when an attempt is made to get a token from a receiver that does not contain one.
NoTokenException(String) - Constructor for exception ptolemy.actor.NoTokenException
Deprecated.
Use NoTokenException(Nameable, String) so that the UI can indicate which actor caused the error.
NoTokenException(Nameable, String) - Constructor for exception ptolemy.actor.NoTokenException
Construct an exception originating from the given object, with the given error message.
NoTokenException(Nameable, Throwable, String) - Constructor for exception ptolemy.actor.NoTokenException
Construct an exception originating from the given object, with the given error message.
NotSchedulableException - Exception in ptolemy.actor.sched
This is a special case of the InvalidStateException such that a CompositeActor is not schedulable by a certain scheduler.
NotSchedulableException(String) - Constructor for exception ptolemy.actor.sched.NotSchedulableException
Deprecated.
Use a NotSchedulableException constructor that includes a Nameable so that the exception window includes a "Go To Actor" button.
NotSchedulableException(Nameable, String) - Constructor for exception ptolemy.actor.sched.NotSchedulableException
Constructs an Exception with a detail message that includes the name of the first argument and the second argument string.
NotSchedulableException(Nameable, Nameable, String) - Constructor for exception ptolemy.actor.sched.NotSchedulableException
Constructs an Exception with a detail message that includes the names of the first two arguments plus the third argument string.
NotSchedulableException(Enumeration, String) - Constructor for exception ptolemy.actor.sched.NotSchedulableException
Deprecated.
Use NotSchedulableException(Collection, Throwable, String) instead.
NotSchedulableException(Collection, Throwable, String) - Constructor for exception ptolemy.actor.sched.NotSchedulableException
Constructs an Exception with a detail message that includes the names of a Collection of nameables, the causing Throwable and the detail argument.
notSupportedConversionMessage(Token, String) - Static method in class ptolemy.data.Token
Return a string with an error message that states that the given token cannot be converted to the given token type.
notSupportedDifferentClassesMessage(String, Token, Token) - Static method in class ptolemy.data.AbstractNotConvertibleToken
Return a string with an error message that states that the given operation is not supported between two tokens, because they have incomparable types and cannot be converted to the same type.
NotSupportedException - Exception in org.kepler.job
Exception for the job class failures thrown in Job.java
NotSupportedException(String) - Constructor for exception org.kepler.job.NotSupportedException
 
notSupportedIncomparableConversionMessage(Token, String) - Static method in class ptolemy.data.Token
Return a string with an error message that states that the given token cannot be converted to the given token type.
notSupportedIncomparableMessage(String, Token, Token) - Static method in class ptolemy.data.Token
Return a string with an error message that states that the given operation is not supported between two tokens, because they have incomparable types and cannot be converted to the same type.
notSupportedMessage(String, Token, Token) - Static method in class ptolemy.data.Token
Return a string with an error message that states that the given operation is not supported between two tokens.
notSupportedNullNilStringMessage(String, String) - Static method in class ptolemy.data.Token
Return a string with an error message that states that the token cannot be created with a string that is null or the value of the init parameter.
nrows - Variable in class org.ecoinformatics.seek.gis.java_gis.Grid
 
nsamp - Variable in class org.ROADnet.OrbWaveformSink
The number of samples per packet.
NULL - Static variable in class org.json.JSONObject
It is sometimes more convenient and less ambiguous to have a NULL object than to use Java's null value.
NULL - Static variable in class ptolemy.data.ObjectToken
A new empty ObjectToken.
NULLABLE_INTEGER - Static variable in class org.kepler.util.sql.Column
An integer column that can be null.
NULLABLE_MD5_TEXT - Static variable in class org.kepler.util.sql.Column
An MD5 text column that can be null.
NULLABLE_TEXT - Static variable in class org.kepler.util.sql.Column
A text column that can be null.
nullDes - Variable in class org.kepler.spark.mllib.RemoveNulls
Missing Values Designator: CANNOT be EMPTY STRING!.
NULLEcogridConfigurationException - Exception in org.ecoinformatics.seek.ecogrid.exception
Title: NULLEcogridConfigurationException Description: The exception for ecogrid configuration is null Copyright: Copyright (c) 2004 Company: UCSB
NULLEcogridConfigurationException(String) - Constructor for exception org.ecoinformatics.seek.ecogrid.exception.NULLEcogridConfigurationException
 
NullOutputFormat - Class in org.kepler.stratosphere.io.output
Output Format which sends nothing to outputs.
NullOutputFormat() - Constructor for class org.kepler.stratosphere.io.output.NullOutputFormat
 
NULLSearchNamespaceException - Exception in org.ecoinformatics.seek.ecogrid.exception
Exception for search namespace is null
NULLSearchNamespaceException(String) - Constructor for exception org.ecoinformatics.seek.ecogrid.exception.NULLSearchNamespaceException
 
NullSink - Class in org.kepler.spark.operator
A data sink that does not write to anything.
NullSink(String) - Constructor for class org.kepler.spark.operator.NullSink
Create a new NullSink.
nullVal - Variable in class org.geon.Interpolate
Representation of null values
NUM_FIELDS_PARAMETER - Static variable in class org.kepler.stratosphere.io.output.TokenOutputFormat
 
NUM_STATISTICS_SAMPLES - Static variable in class org.kepler.bio.stratosphere.input.FASTAInputFormat
The configuration key to set the number of samples to take for the statistics.
NUM_STATISTICS_SAMPLES - Static variable in class org.kepler.bio.stratosphere.input.FASTAInputFormatBySize
The configuration key to set the number of samples to take for the statistics.
number - Variable in class org.resurgence.actor.BooleanAccumulator
The port parameter, which specifies the number of booleans in the sequence and defaults to 1.
number - Variable in class org.resurgence.actor.TokenCounter
The output port, which contains the number of tokens.
number() - Method in class ptolemy.moml.unit.UParser
 
numberOfBins - Variable in class ptolemy.actor.lib.ComputeHistogram
The number of bins.
numberOfBits - Variable in class ptolemy.domains.sdf.lib.BitsToInt
The number of bits that is converted to the output integer.
numberOfBits - Variable in class ptolemy.domains.sdf.lib.IntToBits
The number of Boolean tokens that the input integer is converted to.
numberOfConditions - Variable in class org.srb.SRBCreateQueryInterface
The number of query conditions.
numberOfCycles - Variable in class ptolemy.actor.lib.Clock
Deprecated.
The number of cycles to produce, or UNBOUNDED to specify no limit.
numberOfEntities() - Method in class ptolemy.actor.LazyTypedCompositeActor
Return the number of contained entities.
numberOfEntities() - Method in class ptolemy.kernel.CompositeEntity
Return the number of contained entities, not including class definitions.
numberOfEntities() - Method in class ptolemy.moml.EntityLibrary
Return the number of contained entities.
numberOfInputs - Variable in class ptolemy.domains.sdf.lib.Autocorrelation
Number of input samples to average.
numberOfLags - Variable in class ptolemy.domains.sdf.lib.Autocorrelation
Number of autocorrelation lags to output.
numberOfLines - Variable in class ptolemy.vergil.icon.ValueIcon
The number of lines to display.
numberOfLinesToSkip - Variable in class org.geon.FileToArray
The number of lines to skip at the beginning of the file or URL.
numberOfLinesToSkip - Variable in class org.geon.FileToString
The number of lines to skip at the beginning of the file or URL.
numberOfLinesToSkip - Variable in class ptolemy.actor.lib.io.LineReader
The number of lines to skip at the beginning of the file or URL.
numberOfOccurences - Variable in class org.sdm.spa.SyncOnTerminator
The number of occurences of the terminator in the stream.
numberOfOpenFrames() - Method in class org.kepler.gui.ModelToFrameManager
Return the number of open frames.
numberOfOpenTableaux() - Method in class ptolemy.actor.gui.Effigy
Return the total number of open tableau for this effigy effigy and all effigies it contains.
numberOfRelations() - Method in class ptolemy.actor.LazyTypedCompositeActor
Return the number of contained relations.
numberOfRelations() - Method in class ptolemy.kernel.CompositeEntity
Return the number of contained relations.
numberOfSinks() - Method in class ptolemy.actor.IOPort
Return the number of sink ports that may receive data from this one.
numberOfSources() - Method in class ptolemy.actor.IOPort
Return the number of source ports that may send data to this one.
numberOfTimes - Variable in class ptolemy.domains.sdf.lib.Repeat
The repetition factor.
numberOfTokens - Variable in class ptolemy.actor.ConstantPublisherPort
The number of constant tokens to publish.
numberToRead - Variable in class ptolemy.domains.sdf.lib.Chop
The number of input tokens to read.
numberToString(Number) - Static method in class org.json.JSONObject
Produce a string from a Number.
numberToWrite - Variable in class ptolemy.domains.sdf.lib.Chop
The number of tokens to write to the output.
numChannels - Variable in class ptolemy.media.Audio
The number of channels.
numClasses - Variable in class org.kepler.spark.mllib.RandomForestModel
Number of classes to categorize
numClusters - Variable in class org.kepler.spark.mllib.KMeansClustering
The number of clusters.
numClusters - Variable in class org.kepler.spark.mllib.KMeansModel
The number of clusters.
numcols - Variable in class org.ecoinformatics.seek.gis.java_gis.CVHull2Raster
Number of columns in the grid to be created.
numcols - Variable in class org.ecoinformatics.seek.gis.java_gis.GridRescaler
The number of columns (cells in the x-direction) in the output grid.
NUMCOLUMNS - Static variable in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreDataSource
 
numCopies - Variable in class org.geon.Duplicator
Number of copies.
numDistances - Variable in class org.ecoinformatics.seek.gis.grass.GISBufferActor
 
numEntities() - Method in class ptolemy.kernel.CompositeEntity
Deprecated.
Use numberOfEntities
numerator - Variable in class ptolemy.actor.lib.IIR
This parameter represents the numerator coefficients as an array of tokens.
numerator - Variable in class ptolemy.domains.continuous.lib.ContinuousTransferFunction
The coefficients of the numerator, containing an array of DoubleTokens.
Numerical - Interface in ptolemy.data
A marker interface used for representing the Numerical type in the type hierarchy.
NumericDomain - Class in org.kepler.objectmanager.data
 
NumericDomain(String, Double, Double) - Constructor for class org.kepler.objectmanager.data.NumericDomain
Constructor of numeric domain
numHullPoint - Variable in class org.ecoinformatics.seek.gis.grass.GISHullActor
 
numHullPoint - Variable in class org.ecoinformatics.seek.gis.grass.GISRasterActor
 
numHullPoint - Variable in class org.ecoinformatics.seek.gis.java_gis.GISHullActorJ
'numHullPoint' is the number of x,y pairs in the hull file
numInputs() - Method in class org.kepler.spark.operator.Operator
Get the number of input operators.
numInputTokens - Variable in class org.kepler.data.conversion.binary.EnsembleActor
 
numInsideLinks() - Method in class ptolemy.kernel.ComponentPort
Return the number of inside links.
numIterations - Variable in class org.kepler.spark.mllib.SVMKModel
The number of iterations to run the training algorithm to build the model
numLinks() - Method in class ptolemy.kernel.Port
Return the number of links to relations.
numLinks() - Method in class ptolemy.kernel.Relation
Return the number of links to ports, either directly or indirectly via other relations in the relation group.
numLocalWorkers - Variable in class org.kepler.spark.actor.SparkConnection
The number of workers when running Spark locally.
numPartitions - Variable in class org.kepler.spark.mllib.SparkSQLQuery
number of partitions
numRasterCols - Variable in class org.ecoinformatics.seek.gis.grass.GISBufferActor
 
numRasterCols - Variable in class org.ecoinformatics.seek.gis.grass.GISRasterActor
 
numRasterRows - Variable in class org.ecoinformatics.seek.gis.grass.GISBufferActor
 
numRasterRows - Variable in class org.ecoinformatics.seek.gis.grass.GISRasterActor
 
numRelations() - Method in class ptolemy.kernel.CompositeEntity
Deprecated.
Use numberOfRelations.
numrows - Variable in class org.ecoinformatics.seek.gis.java_gis.CVHull2Raster
Number of rows in the grid to be created.
numrows - Variable in class org.ecoinformatics.seek.gis.java_gis.GridRescaler
The number of rows (cells in the y-direction) in the output grid.
numRuns - Variable in class org.kepler.spark.mllib.KMeansModel
The number of runs of the algorithm to execute in parallel.
numSameJVMWorkers - Variable in class org.kepler.spark.director.SparkEngine
 
numTasks - Variable in class org.kepler.actor.job.GenericJobLauncher
The number of tasks for the job - used in a task parallel job
numTasks - Variable in class org.kepler.actor.job.JobStatus
Parameter to set if the workflow is task parallel.
numTrees - Variable in class org.kepler.spark.mllib.RandomForestModel
Number of trees in ensemble
numXPixels - Variable in class org.ecoinformatics.seek.R.RExpression
The width of the output graphics bitmap in pixels
numXPixels - Variable in class org.ecoinformatics.seek.R.RExpression2
The width of the output graphics bitmap in pixels
numXPixels - Variable in class ptolemy.actor.lib.r.RExpression
The width of the output graphics bitmap in pixels.
numXPixels - Variable in class ptolemy.actor.lib.r.RExpression2
The width of the output graphics bitmap in pixels.
numYPixels - Variable in class org.ecoinformatics.seek.R.RExpression
The height of the output graphics bitmap in pixels
numYPixels - Variable in class org.ecoinformatics.seek.R.RExpression2
The height of the output graphics bitmap in pixels
numYPixels - Variable in class ptolemy.actor.lib.r.RExpression
The height of the output graphics bitmap in pixels.
numYPixels - Variable in class ptolemy.actor.lib.r.RExpression2
The height of the output graphics bitmap in pixels.

O

object() - Method in class org.json.JSONWriter
Begin appending a new object.
object(String) - Static method in class ptolemy.data.ObjectToken
Return an ObjectToken with value null and class specified by the className argument.
OBJECT - Static variable in class ptolemy.data.type.BaseType
The object data type.
objectAdded(CacheEvent) - Method in interface org.kepler.objectmanager.cache.CacheListener
called with a CacheObject is added to the cache
objectAdded() - Method in class org.kepler.objectmanager.cache.CacheObject
call back for when this object is added to the cache.
objectAdded() - Method in interface org.kepler.objectmanager.cache.CacheObjectInterface
call back for when this object is added to the cache
objectAdded() - Method in class org.kepler.objectmanager.cache.RawDataCacheObject
call back for when this object is added to the cache
objectAdded() - Method in class org.kepler.objectmanager.cache.ReportLayoutCacheObject
call back for when this object is added to the cache
objectAdded() - Method in class org.kepler.objectmanager.cache.WorkflowRunCacheObject
call back for when this object is added to the cache
ObjectManager - Class in org.kepler.objectmanager
The ObjectManager searches through all of the NamedObj Objects in the workspace to see if any of them have a KeplerLSID associated with them.
ObjectManager() - Constructor for class org.kepler.objectmanager.ObjectManager
Empty constructor
objectName - Variable in class org.ecoinformatics.seek.gis.grass.GrassImportActor
 
objectPurged(CacheEvent) - Method in interface org.kepler.objectmanager.cache.CacheListener
called when a CacheObject is forcibly purged from the cache by ObjectCache
objectPurged() - Method in class org.kepler.objectmanager.cache.CacheObject
call back for when this object is purged by ObjectCache.
objectPurged() - Method in interface org.kepler.objectmanager.cache.CacheObjectInterface
call back for when this object is purged by CacheManager
objectPurged() - Method in class org.kepler.objectmanager.cache.RawDataCacheObject
call back for when this object is purged by CacheManager
objectPurged() - Method in class org.kepler.objectmanager.cache.ReportLayoutCacheObject
call back for when this object is purged by CacheManager
objectPurged() - Method in class org.kepler.objectmanager.cache.WorkflowRunCacheObject
call back for when this object is purged by CacheManager
objectRemoved(CacheEvent) - Method in interface org.kepler.objectmanager.cache.CacheListener
called with a CacheObject is removed from the cache by a 3rd party
objectRemoved() - Method in class org.kepler.objectmanager.cache.CacheObject
call back for when this object is removed by the user.
objectRemoved() - Method in interface org.kepler.objectmanager.cache.CacheObjectInterface
call back for when this object is removed by CacheManager
objectRemoved() - Method in class org.kepler.objectmanager.cache.RawDataCacheObject
call back for when this object is removed by the user
objectRemoved() - Method in class org.kepler.objectmanager.cache.ReportLayoutCacheObject
call back for when this object is removed by the user
objectRemoved() - Method in class org.kepler.objectmanager.cache.WorkflowRunCacheObject
call back for when this object is removed by the user
ObjectToken - Class in ptolemy.data
A token that contains a reference to an arbitrary object.
ObjectToken() - Constructor for class ptolemy.data.ObjectToken
Construct an empty token.
ObjectToken(Object) - Constructor for class ptolemy.data.ObjectToken
Construct a token with a reference to the specified object.
ObjectToken(Object, Class<?>) - Constructor for class ptolemy.data.ObjectToken
Construct a token with the given value and the given class as the value's type.
ObjectToRecord - Class in org.ROADnet
Ptolemy actor to produce from an ObjectToken a RecordToken, with record entries corresponding to fields within the object carried by the ObjectToken.
ObjectToRecord(CompositeEntity, String) - Constructor for class org.ROADnet.ObjectToRecord
 
objectToSourceFileName(Object) - Static method in class ptolemy.util.StringUtilities
Return a string representing the name of the file expected to contain the source code for the specified object.
ObjectType - Class in ptolemy.data.type
A type of tokens that contain arbitrary Java objects.
ObjectType() - Constructor for class ptolemy.data.type.ObjectType
Construct an ObjectType with null as the Java class specified in it.
ObjectType(Class<?>) - Constructor for class ptolemy.data.type.ObjectType
Construct an ObjectType with the given Java class as the class specified in it.
ObjectType(Object, Class<?>) - Constructor for class ptolemy.data.type.ObjectType
Construct an ObjectType with the given Java class as the class specified in it.
ObjectType.BottomClass - Class in ptolemy.data.type
An artificial Java class that serves as the bottom element.
observables - Variable in class org.kepler.gis.actor.pylaski.GetPylaskiMeasurements
 
observables - Variable in class org.kepler.spark.mllib.GetLiveMeasurements
 
observationIncrement - Variable in class org.kepler.gis.actor.farsite.GenerateWindFile
The number of minutes between observations.
obsolete() - Method in class ptolemy.graph.analysis.strategy.CachedStrategy
Test whether or not the cached result of the analyzer is obsolete relative to the associated graph.
OCTAL_LITERAL - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
ODESolver - Variable in class ptolemy.domains.continuous.kernel.ContinuousDirector
The class name of the ODE solver used for integration.
of(Node, String) - Static method in class org.kepler.kar.karxml.KarXml.KarEntry
 
of(File) - Static method in class org.kepler.kar.karxml.KarXml
 
of(InputStream) - Static method in class org.kepler.kar.karxml.KarXml
 
OFF_ICON_STR - Static variable in class org.kepler.provenance.gui.ProvenanceConfigureAction
Icon when top-level recorder is not present.
offset - Variable in class org.sdm.spa.actors.piw.viz.Sequence
 
offset - Variable in class ptolemy.domains.sdf.lib.Chop
Start of output block relative to start of input block.
offset - Variable in class ptolemy.media.Audio
Offset of audio data relative to the start of the stream.
offsetFigure(double, double, double, double, Class<?>, FigureLayer, Rectangle2D) - Static method in class ptolemy.vergil.toolbox.FigureAction
Determine a new location for a figure if another figure is already at that location.
OffsetMoMLChangeRequest - Class in ptolemy.vergil.basic
A mutation request specified in MoML that offsets any objects that are created in the toplevel.
OffsetMoMLChangeRequest(Object, NamedObj, String) - Constructor for class ptolemy.vergil.basic.OffsetMoMLChangeRequest
Construct a mutation request to be executed in the specified context.
offsets - Variable in class ptolemy.actor.lib.Clock
Deprecated.
The offsets at which the specified values will be produced.
offsets - Variable in class ptolemy.actor.lib.DiscreteClock
The offsets at which the specified values will be produced.
offsets - Variable in class ptolemy.actor.lib.SequentialClock
Deprecated.
The offsets at which the specified values will be produced.
offsets - Variable in class ptolemy.domains.continuous.lib.EventSource
Deprecated.
The offsets at which the specified values will be produced.
okColor - Variable in class ptolemy.vergil.icon.ConstraintMonitorIcon
Color of the box to use when the constraint is satisfied.
oldFile - Variable in class org.resurgence.actor.FileCopier
The input port, which contains the old file path and name.
omissionValue - Variable in class org.ecoinformatics.seek.gis.java_gis.GARPSummary
The omission value
ON_ICON_STR - Static variable in class org.kepler.cloudsharing.gui.CloudSharingConfigureAction
Icon for toolbar.
ON_ICON_STR - Static variable in class org.kepler.provenance.gui.ProvenanceConfigureAction
Icon when top-level recorder is present.
onCancel() - Method in class org.ecoinformatics.seek.ecogrid.EcogridPreferencesTab
 
onCancel() - Method in class org.ecoinformatics.seek.ecogrid.ServicesListModificationPanel
 
onCancel() - Method in class org.kepler.gui.ComponentLibraryPreferencesTab
Called when the user cancels
onCancel() - Method in class org.kepler.gui.kar.KARPreferencesTab
 
onCancel() - Method in interface org.kepler.gui.PreferencesTab
This method is called if the user presses the cancel button on the preferences frame.
onCancel() - Method in class org.kepler.workflowscheduler.gui.configurationwizard.WorkflowRunEnginePreferenceTab
This method is called if the user presses the cancel button on the preferences frame.
onCancel() - Method in class org.kepler.workflowscheduler.gui.configurationwizard.WorkflowSchedulerPreferenceTab
This method is called if the user presses the cancel button on the preferences frame.
onClose() - Method in class org.ecoinformatics.seek.ecogrid.EcogridPreferencesTab
 
onClose() - Method in class org.ecoinformatics.seek.ecogrid.ServicesListModificationPanel
 
onClose() - Method in class org.kepler.gui.ComponentLibraryPreferencesTab
Called when the preference tab is closed.
onClose() - Method in class org.kepler.gui.kar.KARPreferencesTab
If any KARCompliance change by the user is made and it's different from serialized KARCompliance, serialize it and rebuild library so that new KARCompliance setting will take effect (so KARs may display warning icons, KARS_CACHED, and KARS_ERRORS tables are rebuilt, etc)
onClose() - Method in interface org.kepler.gui.PreferencesTab
This method is called as the preferences frame is closed legitimately meaning that all changes to the preferences should be saved.
onClose() - Method in class org.kepler.workflowscheduler.gui.configurationwizard.WorkflowRunEnginePreferenceTab
This method is called as the preferences frame is closed legitimately meaning that all changes to the preferences should be saved.
onClose() - Method in class org.kepler.workflowscheduler.gui.configurationwizard.WorkflowSchedulerPreferenceTab
This method is called as the preferences frame is closed legitimately meaning that all changes to the preferences should be saved.
one() - Method in class org.geon.DBConnectionToken.DBConnectionType
Return the type of the multiplicative identity for elements of this type.
one() - Method in class org.kepler.gis.data.BoundingBoxToken.BoundingBoxType
 
one() - Method in class org.kepler.gis.data.GISToken.GISType
 
one() - Method in class org.kepler.gis.data.RasterToken.RasterType
 
one() - Method in class org.kepler.gis.data.VectorToken.VectorType
 
one() - Method in class ptolemy.data.ArrayToken
Return a new ArrayToken representing the multiplicative identity.
one() - Method in class ptolemy.data.BooleanMatrixToken
Return a new Token representing the left multiplicative identity.
one() - Method in class ptolemy.data.BooleanToken
Returns a token representing the multiplicative identity.
one() - Method in class ptolemy.data.ComplexMatrixToken
Return a new Token representing the left multiplicative identity.
one() - Method in class ptolemy.data.ComplexToken
Returns a new ComplexToken with value 1.0.
one() - Method in class ptolemy.data.DoubleMatrixToken
Return a new Token representing the left multiplicative identity.
ONE - Static variable in class ptolemy.data.DoubleToken
A DoubleToken with the value 1.0.
one() - Method in class ptolemy.data.DoubleToken
Returns a DoubleToken with value 1.0.
one() - Method in class ptolemy.data.FixMatrixToken
Return a new Token representing the left multiplicative identity with the same precision as the current FixMatrixToken.
one() - Method in class ptolemy.data.FixToken
Returns a new Token representing the multiplicative identity with the same precision as this FixToken.
ONE - Static variable in class ptolemy.data.FloatToken
A FloatToken with the value 1.0.
one() - Method in class ptolemy.data.FloatToken
Returns a FloatToken with value 1.0.
one() - Method in class ptolemy.data.IntMatrixToken
Return a new Token representing the left multiplicative identity.
ONE - Static variable in class ptolemy.data.IntToken
A IntToken with the value 1.0.
one() - Method in class ptolemy.data.IntToken
Returns an IntToken with value 1.
one() - Method in class ptolemy.data.LongMatrixToken
Return a new Token representing the left multiplicative identity.
ONE - Static variable in class ptolemy.data.LongToken
A LongToken with the value 1.0.
one() - Method in class ptolemy.data.LongToken
Returns a LongToken with value 1.
ONE - Static variable in class ptolemy.data.PetiteToken
A PetiteToken with the value 1.0.
one() - Method in class ptolemy.data.PetiteToken
Returns a PetiteToken with value nearest 1.0.......
one() - Method in class ptolemy.data.RecordToken
Returns a new RecordToken representing the multiplicative identity.
ONE - Static variable in class ptolemy.data.ShortToken
A ShortToken with the value 1.0.
one() - Method in class ptolemy.data.ShortToken
Returns an ShortToken with value 1.
one() - Method in class ptolemy.data.Token
Returns a new Token representing the multiplicative identity.
one() - Method in class ptolemy.data.TupleToken
Return a new TupleToken representing the multiplicative identity.
one() - Method in class ptolemy.data.type.ActorType
Return the type of the multiplicative identity for elements of this type.
one() - Method in class ptolemy.data.type.BaseType
Return the type of the multiplicative identity for elements of this type.
one() - Method in class ptolemy.data.type.FixType
Return the type of the multiplicative identity for elements of this type.
one() - Method in class ptolemy.data.type.StructuredType
Return the type of the multiplicative identity for elements of this type.
one() - Method in class ptolemy.data.type.test.TestToken.TestType
Return the type of the multiplicative identity for elements of this type.
one() - Method in interface ptolemy.data.type.Type
Return the type of the multiplicative identity for elements of this type.
one() - Method in class ptolemy.data.UnionToken
Returns a new UnionToken representing the multiplicative identity.
ONE - Static variable in class ptolemy.data.UnsignedByteToken
A UnsignedByteToken with the value 1.
one() - Method in class ptolemy.data.UnsignedByteToken
Returns an UnsignedByteToken with value 1.
ONE - Static variable in class ptolemy.math.Complex
A Complex number representing one.
ONE_OVER_SQRT_2 - Static variable in class ptolemy.math.ExtendedMath
1 / sqrt(2).
oneRight() - Method in class ptolemy.data.BooleanMatrixToken
Return a new Token representing the right multiplicative identity.
oneRight() - Method in class ptolemy.data.ComplexMatrixToken
Return a new Token representing the right multiplicative identity.
oneRight() - Method in class ptolemy.data.DoubleMatrixToken
Return a new Token representing the right multiplicative identity.
oneRight() - Method in class ptolemy.data.FixMatrixToken
Return a new Token representing the right multiplicative identity with the same precision as the current FixMatrixToken..
oneRight() - Method in class ptolemy.data.IntMatrixToken
Return a new Token representing the right multiplicative identity.
oneRight() - Method in class ptolemy.data.LongMatrixToken
Return a new Token representing the right multiplicative identity.
oneRight() - Method in class ptolemy.data.MatrixToken
Return a new Token representing the right multiplicative identity.
onExecutorAdded(SparkListenerExecutorAdded) - Method in class org.kepler.spark.actor.StdoutSparkListener
 
onExecutorRemoved(SparkListenerExecutorRemoved) - Method in class org.kepler.spark.actor.StdoutSparkListener
 
onJobEnd(SparkListenerJobEnd) - Method in class org.kepler.spark.actor.StdoutSparkListener
 
onJobStart(SparkListenerJobStart) - Method in class org.kepler.spark.actor.StdoutSparkListener
 
onStageCompleted(SparkListenerStageCompleted) - Method in class org.kepler.spark.actor.StdoutSparkListener
 
onStageSubmitted(SparkListenerStageSubmitted) - Method in class org.kepler.spark.actor.StdoutSparkListener
 
onTaskEnd(SparkListenerTaskEnd) - Method in class org.kepler.spark.actor.StdoutSparkListener
 
onTaskStart(SparkListenerTaskStart) - Method in class org.kepler.spark.actor.StdoutSparkListener
 
ontClass() - Method in class org.kepler.sms.NamedOntClass
 
OntLibrarySearcher - Class in org.kepler.gui
Deprecated.
This class is unused, so deprecating. Consider for deletion? -01/27/11 derik
OntLibrarySearcher(JTree, LibrarySearchPane) - Constructor for class org.kepler.gui.OntLibrarySearcher
Deprecated.
Constructor
OntoClassSearchDialog - Class in org.kepler.sms.gui
 
OntoClassSearchDialog(Frame, Vector) - Constructor for class org.kepler.sms.gui.OntoClassSearchDialog
 
OntoClassSelectionJPanel - Class in org.kepler.sms.gui
This class implements a simple panel for selecting classes from a tree widget and adding them to a target list.
OntoClassSelectionJPanel() - Constructor for class org.kepler.sms.gui.OntoClassSelectionJPanel
Default constructor that initializes the panel, accepting all ontologies and having a default width and height.
OntoClassSelectionJPanel(boolean) - Constructor for class org.kepler.sms.gui.OntoClassSelectionJPanel
Initializes the panel with default width and height.
OntoClassSelectionJPanel(int, int) - Constructor for class org.kepler.sms.gui.OntoClassSelectionJPanel
Initializes the panel accepting all ontologies.
OntoClassSelectionJPanel(boolean, int, int) - Constructor for class org.kepler.sms.gui.OntoClassSelectionJPanel
Initializes the panel with the appropriate ontologies, width, and height
ontology - Variable in class org.kepler.tagging.gui.CBItems.ExistingConceptCBItem
 
OntologyCatalog - Class in org.ecoinformatics.seek.sms
Description of the Class
OntologyCatalog() - Constructor for class org.ecoinformatics.seek.sms.OntologyCatalog
Constructor for the OntologyCatalog object
OntologyCatalog - Class in org.kepler.sms
Created by IntelliJ IDEA.
OntologyCatalog(boolean) - Constructor for class org.kepler.sms.OntologyCatalog
 
OntologyCatalog() - Constructor for class org.kepler.sms.OntologyCatalog
Constructor for the OntologyCatalog object
OntologyComponentPopup - Class in org.kepler.gui.popups
Subclass of LibraryPopup that handles library items that are components and not inside of a KAR (i.e. components inside ontologies).
OntologyComponentPopup(TreePath, Component) - Constructor for class org.kepler.gui.popups.OntologyComponentPopup
 
OntologyConfiguration - Class in org.kepler.sms.util
This class reads in ontology_catalog.xml and returns the set of ontologies.
OntologyConfiguration() - Constructor for class org.kepler.sms.util.OntologyConfiguration
This is a singleton class, so the constructor is "hidden"
OntologyDisplaySelectionEvent - Class in org.kepler.tagging.gui
 
OntologyDisplaySelectionEvent(Object, NamedOntModel) - Constructor for class org.kepler.tagging.gui.OntologyDisplaySelectionEvent
 
OntologyDisplaySelectionListener - Interface in org.kepler.tagging.gui
 
OntologyDisplayUI - Class in org.kepler.tagging.gui
 
OntologyDisplayUI() - Constructor for class org.kepler.tagging.gui.OntologyDisplayUI
 
OntologyEditorUI - Class in org.kepler.tagging.gui
 
OntologyEditorUI() - Constructor for class org.kepler.tagging.gui.OntologyEditorUI
Basic constructor
OntologyEntityLibrary - Class in org.kepler.moml
A convenience class to determine the different types of EntityLibraries in the trees for assigning icons.
OntologyEntityLibrary() - Constructor for class org.kepler.moml.OntologyEntityLibrary
 
OntologyEntityLibrary(Workspace) - Constructor for class org.kepler.moml.OntologyEntityLibrary
 
OntologyEntityLibrary(CompositeEntity, String) - Constructor for class org.kepler.moml.OntologyEntityLibrary
 
OntologyPopup - Class in org.kepler.gui.popups
Subclass of LibraryPopup that handles the popup menu items for the Ontology items.
OntologyPopup(TreePath, Component) - Constructor for class org.kepler.gui.popups.OntologyPopup
 
OntologyRow - Class in org.kepler.sms
Created by IntelliJ IDEA.
OntologyRow() - Constructor for class org.kepler.sms.OntologyRow
 
OntologyRow(NamedOntModel) - Constructor for class org.kepler.sms.OntologyRow
 
OntologyRow(NamedOntModel, boolean, boolean, Color, boolean) - Constructor for class org.kepler.sms.OntologyRow
 
OntologyTreeCellRenderer - Class in org.kepler.gui
A TreeCellRenderer for Ontologies.
OntologyTreeCellRenderer() - Constructor for class org.kepler.gui.OntologyTreeCellRenderer
Constructor - creates a new TreeCellRenderer
OntologyTreeCellRenderer(boolean) - Constructor for class org.kepler.gui.OntologyTreeCellRenderer
 
OntoPropSearchDialog - Class in org.kepler.sms.gui
 
OntoPropSearchDialog(Frame, Vector) - Constructor for class org.kepler.sms.gui.OntoPropSearchDialog
 
ontProperty() - Method in class org.kepler.sms.NamedOntProperty
 
OntSelectActionHandler() - Constructor for class org.kepler.gui.ComponentLibraryTab.OntSelectActionHandler
 
open(FileInputSplit) - Method in class org.kepler.bio.stratosphere.input.FASTAInputFormat
Opens the given input split.
open(FileInputSplit) - Method in class org.kepler.bio.stratosphere.input.FASTAInputFormatBySize
Opens the given input split.
open(KARFile, KAREntry, TableauFrame) - Method in class org.kepler.kar.handlers.ActorMetadataKAREntryHandler
 
open(KARFile, KAREntry, TableauFrame) - Method in class org.kepler.kar.handlers.JARKAREntryHandler
 
open(KARFile, KAREntry, TableauFrame) - Method in class org.kepler.kar.handlers.ModuleTxtKAREntryHandler
When a KAR file is opened, any entries in the kar file that have the same type as this KAREntryHandler will be passed to this open method.
open(KARFile, KAREntry, TableauFrame) - Method in class org.kepler.kar.handlers.ProvKAREntryHandler
Open a KAR entry for a PROVProvenance.
open(KARFile, KAREntry, TableauFrame) - Method in class org.kepler.kar.handlers.ReportInstanceKAREntryHandler
 
open(KARFile, KAREntry, TableauFrame) - Method in class org.kepler.kar.handlers.ReportLayoutKAREntryHandler
 
open(KARFile, KAREntry, TableauFrame) - Method in class org.kepler.kar.handlers.WorkflowRunEntryHandler
 
open(KARFile, KAREntry, TableauFrame) - Method in interface org.kepler.kar.KAREntryHandler
When a KAR file is opened, any entries in the KAR file that have the same type as this KAREntryHandler will be passed to this open method.
open(KAREntry, TableauFrame) - Method in class org.kepler.kar.KARFile
Call the open methods of all KAREntryHandlers that support the type of the given entry.
open(FileInputSplit) - Method in class org.kepler.stratosphere.io.input.DataFileInputFormat
 
open(GenericInputSplit) - Method in class org.kepler.stratosphere.io.input.TokenInputFormat
Opens a parallel instance of the input format to work on a split.
open(int) - Method in class org.kepler.stratosphere.io.output.NullOutputFormat
 
open(int) - Method in class org.kepler.stratosphere.io.output.TokenOutputFormat
Opens a parallel instance of the output format to store the result of its parallel instance.
open(Configuration) - Method in class org.kepler.stratosphere.stub.KeplerCoGroupStub
Configure the stub by loading the workflow and setting the PACT data types from the workflow stub actors.
open(Configuration) - Method in class org.kepler.stratosphere.stub.KeplerCombineAndReduceStub
 
open(Configuration) - Method in class org.kepler.stratosphere.stub.KeplerCrossStub
Configure the stub by loading the workflow and setting the PACT data types from the workflow stub actors.
open(Configuration) - Method in class org.kepler.stratosphere.stub.KeplerMapStub
Configure the stub by loading the workflow and setting the PACT data types from the workflow stub actors.
open(Configuration) - Method in class org.kepler.stratosphere.stub.KeplerMatchStub
Configure the stub by loading the workflow and setting the PACT data types from the workflow stub actors.
open(Configuration) - Method in class org.kepler.stratosphere.stub.KeplerReduceStub
Configure the stub by loading the workflow and setting the PACT data types from the workflow stub actors.
open(Configuration) - Method in class org.kepler.stratosphere.stub.ScriptEngineMapStub
 
open(Configuration) - Method in class org.kepler.stratosphere.stub.ScriptEngineReduceStub
 
open() - Method in class ptolemy.matlab.Engine
Open a connection to the default matlab engine installed on this host with its output buffered.
open(boolean) - Method in class ptolemy.matlab.Engine
Open a connection to the default matlab engine installed on this host with specified output buffering.
open(String, boolean) - Method in class ptolemy.matlab.Engine
Open a connection to a matlab engine.
OPENABLE - Static variable in class org.kepler.kar.KARFile
Name object for OPENABLE manifest attribute.
openAnInstance(NamedObj) - Method in class ptolemy.actor.gui.Configuration
Open the specified instance.
openAnInstance(NamedObj) - Method in interface ptolemy.actor.InstanceOpener
Open the specified instance.
OpenArchiveAction - Class in org.kepler.gui.kar
This action opens a kar file to the system.
OpenArchiveAction(TableauFrame) - Constructor for class org.kepler.gui.kar.OpenArchiveAction
Constructor
OpenBaseClassAction() - Constructor for class ptolemy.vergil.basic.BasicGraphController.OpenBaseClassAction
Construct a new action.
OPENBRACE - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
OPENBRACKET - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
openComposite(Frame, NamedObj) - Static method in class ptolemy.vergil.basic.BasicGraphFrame
Opens the nearest composite actor above the target in the hierarchy and possibly change the zoom and centering to show the target.
OpenCompositeAction - Class in org.kepler.gui.component
This action opens a CompositeEntity.
OpenCompositeAction(TableauFrame) - Constructor for class org.kepler.gui.component.OpenCompositeAction
Constructor
OpenCompositeAction(String, TableauFrame) - Constructor for class org.kepler.gui.component.OpenCompositeAction
 
openCompositesBeforeExport - Variable in class ptolemy.vergil.basic.export.web.WebExportParameters
If true, hierarchically open all composite actors in the model before exporting (so that these also get exported, and hyperlinks to them are created).
openCompositesBeforeExport - Variable in class ptolemy.vergil.basic.ExportParameters
If true, hierarchically open all composite actors in the model before exporting (so that these also get exported, and hyperlinks to them are created).
openConnection() - Method in interface org.kepler.ssh.ExecInterface
 
openConnection() - Method in class org.kepler.ssh.GsiSshExec
 
openConnection(boolean) - Method in class org.kepler.ssh.GsiSshExec
 
openConnection() - Method in class org.kepler.ssh.LocalExec
 
openConnection() - Method in class org.kepler.ssh.RemoteExec
 
openConnection() - Method in class org.kepler.ssh.SshExec
Open the connection to the remote machine now.
openContainer() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Open the container, if any, of the entity.
openContainer() - Method in class ptolemy.vergil.modal.CaseGraphFrame
Open the container, if any, of the entity.
opendapCEParameter - Variable in class org.kepler.dataproxy.datasource.opendap.OpendapDataSource
The OPeNDAP Constraint Expression used to sub sample the dataset.
opendapCEParameter - Variable in class org.kepler.dataproxy.datasource.opendap.OpendapDataSourceODC
The OPeNDAP Constraint Expression used to sub sample the dataset.
OpendapDataSource - Class in org.kepler.dataproxy.datasource.opendap
The OPeNDAP actor reads data from OPeNDAP data sources (i.e. servers).
OpendapDataSource(CompositeEntity, String) - Constructor for class org.kepler.dataproxy.datasource.opendap.OpendapDataSource
 
OpendapDataSourceODC - Class in org.kepler.dataproxy.datasource.opendap
The OPeNDAP actor reads data from OPeNDAP data sources (i.e. servers).
OpendapDataSourceODC(CompositeEntity, String) - Constructor for class org.kepler.dataproxy.datasource.opendap.OpendapDataSourceODC
 
opendapURLParameter - Variable in class org.kepler.dataproxy.datasource.opendap.OpendapDataSource
The OPeNDAP URL that identifies a (possibly constrained) dataset.
opendapURLParameter - Variable in class org.kepler.dataproxy.datasource.opendap.OpendapDataSourceODC
The OPeNDAP URL that identifies a (possibly constrained) dataset.
openDataTurbine() - Method in class org.kepler.data.datasource.dataturbine.DataTurbine
Open connection to DataTurbine server.
OpenDBConnection - Class in org.geon
This actor opens a database connection using the database format, database URL, username and password, and sends a reference to it.
OpenDBConnection(CompositeEntity, String) - Constructor for class org.geon.OpenDBConnection
Construct an actor with the given container and name.
openDialog(Frame, NamedObj) - Method in class ptolemy.vergil.toolbox.ConfigureAction
Open an edit parameters dialog.
openFile(String, String, String) - Method in class org.ecoinformatics.seek.querybuilder.QBApp
Opens a Query and loads into the builder
openForReading() - Method in class ptolemy.actor.parameters.FilePortParameter
Open the file or URL for reading.
openForReading() - Method in class ptolemy.data.expr.FileParameter
Open the file or URL for reading.
openForReading() - Method in class ptolemy.kernel.attributes.FileAttribute
Deprecated.
Open the file or URL for reading.
openForReading() - Method in interface ptolemy.kernel.attributes.FileOrURLAccessor
Open the file or URL for reading.
openForReading(String, URI, ClassLoader) - Static method in class ptolemy.util.FileUtilities
Open the specified file for reading.
openForWriting() - Method in class ptolemy.actor.parameters.FilePortParameter
Open the file for writing.
openForWriting(boolean) - Method in class ptolemy.actor.parameters.FilePortParameter
Open the file for writing or appending.
openForWriting() - Method in class ptolemy.data.expr.FileParameter
Open the file for writing.
openForWriting(boolean) - Method in class ptolemy.data.expr.FileParameter
Open the file for writing or appending.
openForWriting() - Method in class ptolemy.kernel.attributes.FileAttribute
Deprecated.
Open the file for writing.
openForWriting(boolean) - Method in class ptolemy.kernel.attributes.FileAttribute
Deprecated.
Open the file for writing or appending.
openForWriting() - Method in interface ptolemy.kernel.attributes.FileOrURLAccessor
Open the file for writing.
openForWriting(boolean) - Method in interface ptolemy.kernel.attributes.FileOrURLAccessor
Open the file for writing or appending.
openForWriting(String, URI, boolean) - Static method in class ptolemy.util.FileUtilities
Open the specified file for writing or appending.
openFrameLink(String) - Static method in class org.kepler.gui.WelcomeScreen.BrowserLauncher
open browser depending on operating system.
openHTMLResource(String, Frame) - Static method in class ptolemy.actor.gui.QueryUtilities
Open a HTML resource in the current configuration if possible.
openInstance(NamedObj) - Method in class ptolemy.actor.gui.Configuration
Open the specified instance.
openInstance(NamedObj, CompositeEntity) - Method in class ptolemy.actor.gui.Configuration
Open the specified instance.
openInstanceAction(FigureAction, NamedObj) - Method in interface ptolemy.vergil.actor.ActorInteractionAddon
The action to be taken when looking inside an actor.
OpenInstanceDialog - Class in ptolemy.actor.gui
This class is a non-modal dialog that displays the current state of parameters of an instance.
OpenInstanceDialog(DialogTableau, Frame, Entity, Configuration) - Constructor for class ptolemy.actor.gui.OpenInstanceDialog
Construct a dialog that presents the parameters as a table.
openKAR(File, boolean, boolean) - Method in class org.kepler.gui.kar.OpenArchiveAction
Process the new kar file into the actor library.
openKARContents(TableauFrame, boolean) - Method in class org.kepler.kar.KARFile
Here we go through all the KAREntries and call the open method of the appropriate KAREntryHandlers.
openKAREntries(TableauFrame, boolean) - Method in class org.kepler.gui.kar.KAREffigy
Open the non-actor entries in the KAR file, e.g., report layout.
openLibrary(Configuration, File) - Static method in class ptolemy.actor.gui.UserActorLibrary
Open the MoML file at the given location as a new library in the actor library for this application.
openLibrary(Configuration, File) - Static method in class ptolemy.vergil.VergilApplication
openModal() - Method in class ptolemy.plot.PlotFormatter
Open a format control window as a top-level, modal dialog.
openModel(URL, URL, String) - Method in class ptolemy.actor.gui.Configuration
Open the specified URL.
openModel(URL, URL, String, EffigyFactory) - Method in class ptolemy.actor.gui.Configuration
Open the specified URL using the specified effigy factory.
openModel(NamedObj) - Method in class ptolemy.actor.gui.Configuration
Open the specified Ptolemy II model.
openModel(NamedObj, CompositeEntity) - Method in class ptolemy.actor.gui.Configuration
Open the specified Ptolemy II model.
openModel(String) - Static method in class ptolemy.actor.gui.ConfigurationApplication
Deprecated.
Use #openModelOrEntity(String) instead and handle the case where the modelFileName refers to a HTML or text file or an interface diagram.
openModelOrEntity(String) - Static method in class ptolemy.actor.gui.ConfigurationApplication
Open a model and display it.
openNodeScope(Node) - Method in class ptolemy.data.expr.JJTMatrixParserState
 
openNodeScope(Node) - Method in class ptolemy.data.expr.JJTPtParserState
 
openOnFiring - Variable in class ptolemy.vergil.actor.lib.VisualModelReference
The value of this string parameter determines what open happens when the fire() method is invoked.
OPENPAREN - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
OpenProvenanceModelXML - Class in org.kepler.provenance.opm
Deprecated.
This recording output is no longer used. Instead, use ProvRecording.
OpenProvenanceModelXML() - Constructor for class org.kepler.provenance.opm.OpenProvenanceModelXML
Deprecated.
Construct a new OpenProvenanceModelXML.
openQueryFile() - Method in class org.ecoinformatics.seek.querybuilder.QBApp
Opens a Query and loads into the builder
openRunAndWriteHTML(BasicGraphFrame, ExportParameters, File, Writer, boolean) - Static method in class ptolemy.vergil.basic.export.html.ExportHTMLAction
Depending on the export parameters (see ExportParameters), open submodels, run the model, and export HTML.
openSchemaFile() - Method in class org.ecoinformatics.seek.querybuilder.QBApp
Opens a Query and loads into the builder
openSentinelModel() - Static method in class ptolemy.vergil.basic.layout.kieler.test.junit.KielerJUnitTest
Save the previous value of the ptolemy.ptII.doNotExit property and set it to true while running this test.
openStreamFollowingRedirects(URL) - Static method in class ptolemy.util.FileUtilities
Given a URL, open a stream.
openStreamFollowingRedirectsReturningBoth(URL) - Static method in class ptolemy.util.FileUtilities
Given a URL, open a stream and return an object containing both the inputStream and the possibly redirected URL.
OPENUNION - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
openURL(String) - Method in class org.geon.BrowserDisplay.BareBonesBrowserLaunch
 
openURL(String) - Static method in class org.kepler.workflowscheduler.gui.configurationwizard.WorkflowSchedulerURLConfigurationDialog
 
openURL(String) - Static method in class ptolemy.actor.gui.BrowserLauncher
Attempts to open the default web browser to the given URL.
openUserLibrary(Configuration) - Static method in class ptolemy.actor.gui.UserActorLibrary
Open the user actor library as a new library in the actor library for this application.
openWindow() - Method in interface ptolemy.actor.lib.gui.DisplayInterface
Open the display window if it has not been opened.
openWindow() - Method in class ptolemy.actor.lib.gui.DisplayJavaSE
Open the display window if it has not been opened.
OpenWorkflowRunEngineConfigDialogAction - Class in org.kepler.workflowscheduler.gui.configurationwizard
Action to open the dialog to configure workflow run engine.
OpenWorkflowRunEngineConfigDialogAction(TableauFrame) - Constructor for class org.kepler.workflowscheduler.gui.configurationwizard.OpenWorkflowRunEngineConfigDialogAction
Constructor
OpenWorkflowSchedulerDialogAction - Class in org.kepler.workflowscheduler.gui
An action to open a workflow scheduler dialog box
OpenWorkflowSchedulerDialogAction(TableauFrame) - Constructor for class org.kepler.workflowscheduler.gui.OpenWorkflowSchedulerDialogAction
Constructor
OpenWorkflowSchedulerURLConfigDialogAction - Class in org.kepler.workflowscheduler.gui.configurationwizard
An action to open the configuration dialog for workflow scheduler url
OpenWorkflowSchedulerURLConfigDialogAction(TableauFrame) - Constructor for class org.kepler.workflowscheduler.gui.configurationwizard.OpenWorkflowSchedulerURLConfigDialogAction
Constructor
operate(Complex, Complex) - Method in interface ptolemy.math.ComplexBinaryOperation
Operate on the operands, returning a value of the same type.
operate(Complex) - Method in interface ptolemy.math.ComplexUnaryOperation
Operate on the operand, returning a value of the same type.
operate(double, double) - Method in interface ptolemy.math.DoubleBinaryOperation
Operate on the operands, returning a value of the same type.
operate(double) - Method in interface ptolemy.math.DoubleUnaryOperation
Operate on the operand, returning a value of the same type.
operate(float, float) - Method in interface ptolemy.math.FloatBinaryOperation
Operate on the operands, returning a value of the same type.
operate(float) - Method in interface ptolemy.math.FloatUnaryOperation
Operate on the operand, returning a value of the same type.
operate(int, int) - Method in interface ptolemy.math.IntegerBinaryOperation
Operate on the operands, returning a value of the same type.
operate(int) - Method in interface ptolemy.math.IntegerUnaryOperation
Operate on the operand, returning a value of the same type.
operate(long, long) - Method in interface ptolemy.math.LongBinaryOperation
Operate on the operands, returning a value of the same type.
operate(long) - Method in interface ptolemy.math.LongUnaryOperation
Operate on the operand, returning a value of the same type.
operate(double) - Method in class ptolemy.math.SignalProcessing.GaussianSampleGenerator
Return a sample of the Gaussian function, sampled at the specified time.
operate(double) - Method in class ptolemy.math.SignalProcessing.PolynomialSampleGenerator
Return a sample of the line, sampled at the specified time.
operate(double) - Method in class ptolemy.math.SignalProcessing.RaisedCosineSampleGenerator
Return a sample of the raised cosine pulse, sampled at the specified time.
operate(double) - Method in class ptolemy.math.SignalProcessing.SawtoothSampleGenerator
Return a sample of the sawtooth wave, sampled at the specified time.
operate(double) - Method in class ptolemy.math.SignalProcessing.SincSampleGenerator
 
operate(double) - Method in class ptolemy.math.SignalProcessing.SinusoidSampleGenerator
 
operate(double) - Method in class ptolemy.math.SignalProcessing.SqrtRaisedCosineSampleGenerator
 
operate(Complex, Complex) - Method in class ptolemy.math.test.TestComplexBinaryOperation
Operate on the operands, returning a value of the same type.
operate(Complex) - Method in class ptolemy.math.test.TestComplexUnaryOperation
Operate on the operand, returning a value of the same type.
operate(double, double) - Method in class ptolemy.math.test.TestDoubleBinaryOperation
Operate on the operands, returning a value of the same type.
operate(double) - Method in class ptolemy.math.test.TestDoubleUnaryOperation
Operate on the operand, returning a value of the same type.
operate(float, float) - Method in class ptolemy.math.test.TestFloatBinaryOperation
Operate on the operands, returning a value of the same type.
operate(float) - Method in class ptolemy.math.test.TestFloatUnaryOperation
Operate on the operand, returning a value of the same type.
operate(int, int) - Method in class ptolemy.math.test.TestIntegerBinaryOperation
Operate on the operands, returning a value of the same type.
operate(int) - Method in class ptolemy.math.test.TestIntegerUnaryOperation
Operate on the operand, returning a value of the same type.
operate(long, long) - Method in class ptolemy.math.test.TestLongBinaryOperation
Operate on the operands, returning a value of the same type.
operate(long) - Method in class ptolemy.math.test.TestLongUnaryOperation
Operate on the operand, returning a value of the same type.
operation - Variable in class org.geon.FTPClient
Operation performed: put/get
operation - Variable in class org.kepler.actor.RecordOperation
The operation to perform: add, extract, remove, or replace.
operation - Variable in class org.resurgence.actor.BooleanAccumulator
The parameter, which specifies the logical operator.
operation - Variable in class ptolemy.actor.lib.ModifyDate
Parameter for operation.
operation - Variable in class ptolemy.actor.lib.SubscriptionAggregator
The operation used to aggregate the data produced by matching publishers.
operation - Variable in class ptolemy.actor.lib.tutorial.SimpleALU
Input port for the operation code.
operation - Variable in class ptolemy.actor.lib.tutorial.StaticALU
Input port for the operation code.
operation - Variable in class ptolemy.actor.SubscriptionAggregatorPort
The operation used to aggregate the data produced by matching publishers.
operationName - Variable in class org.kepler.authentication.AuthenticationService
 
Operator - Class in org.kepler.spark.operator
A base class for operators in a Spark job.
Operator(int, Object, String) - Constructor for class org.kepler.spark.operator.Operator
Create a new Operator.
OPERS - Static variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIStd
 
OPERS_TXT - Static variable in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIStd
 
oPlus(Dependency) - Method in class ptolemy.actor.util.BooleanDependency
Return a dependency that results from parallel composition of this one and the specified one.
oPlus(Dependency) - Method in interface ptolemy.actor.util.Dependency
Return a dependency that results from parallel composition of this one and the specified one.
oPlus(Dependency) - Method in class ptolemy.actor.util.RealDependency
Return a dependency that results from parallel composition of this one and the specified one.
oPlus(Dependency) - Method in class ptolemy.actor.util.SuperdenseDependency
Return a dependency that results from parallel composition of this one and the specified one.
OPLUS_IDENTITY - Static variable in class ptolemy.actor.util.BooleanDependency
The additive identity, which has value false and indicates that there is no dependency.
OPLUS_IDENTITY - Static variable in class ptolemy.actor.util.RealDependency
The additive identity.
OPLUS_IDENTITY - Static variable in class ptolemy.actor.util.SuperdenseDependency
The additive identity.
oPlusIdentity() - Method in class ptolemy.actor.util.BooleanDependency
Return the dependency that when added to any other dependency using oPlus() yields the other dependency.
oPlusIdentity() - Method in interface ptolemy.actor.util.Dependency
Return the dependency that when added to any other dependency using oPlus() yields the other dependency.
oPlusIdentity() - Method in class ptolemy.actor.util.RealDependency
Return the dependency that when added to any other dependency using oPlus() yields the other dependency.
oPlusIdentity() - Method in class ptolemy.actor.util.SuperdenseDependency
Return the dependency that when added to any other dependency using oPlus() yields the other dependency.
OPORT_COORDINATES - Static variable in class ptolemy.vergil.actor.ExternalIOPortController
Polygon coordinates for output port.
oPortList - Variable in class org.camera.service.CAMERARESTService
old port list.
opt(int) - Method in class org.json.JSONArray
Get the optional object value associated with an index.
opt(String) - Method in class org.json.JSONObject
Get an optional value associated with a key.
optBoolean(int) - Method in class org.json.JSONArray
Get the optional boolean value associated with an index.
optBoolean(int, boolean) - Method in class org.json.JSONArray
Get the optional boolean value associated with an index.
optBoolean(String) - Method in class org.json.JSONObject
Get an optional boolean associated with a key.
optBoolean(String, boolean) - Method in class org.json.JSONObject
Get an optional boolean associated with a key.
optDouble(int) - Method in class org.json.JSONArray
Get the optional double value associated with an index.
optDouble(int, double) - Method in class org.json.JSONArray
Get the optional double value associated with an index.
optDouble(String) - Method in class org.json.JSONObject
Get an optional double associated with a key, or NaN if there is no such key or if its value is not a number.
optDouble(String, double) - Method in class org.json.JSONObject
Get an optional double associated with a key, or the defaultValue if there is no such key or if its value is not a number.
OptimalScheduleFinder - Class in ptolemy.domains.sdf.optimize
Class comments An OptimalScheduleFinder encapsulates an algorithm to find an optimized schedule.
OptimalScheduleFinder(OptimizingSDFScheduler, OptimizingSDFDirector.OptimizationCriteria) - Constructor for class ptolemy.domains.sdf.optimize.OptimalScheduleFinder
Construct an instance of the OptimalScheduleFinder.
OptimalScheduleFinder._Actor - Class in ptolemy.domains.sdf.optimize
A model of an actor.
OptimalScheduleFinder._Channel - Class in ptolemy.domains.sdf.optimize
the state of the channel in the channel array has one integer at stateIndex indicating the number of tokens in the channel and another integer at stateIndex+1 indicating how many consumer are still to read the token I need to remember per receiver how many tokens there are for that receiver.
OptimalScheduleFinder._ListOfActors - Class in ptolemy.domains.sdf.optimize
A list of actors, derived from LinkedList.
OptimalScheduleFinder._ListOfChannels - Class in ptolemy.domains.sdf.optimize
A list of channels, based on LinkedList.
OptimalScheduleFinder._ListOfPorts - Class in ptolemy.domains.sdf.optimize
A list of ports, based on LinkedList.
OptimalScheduleFinder._Port - Class in ptolemy.domains.sdf.optimize
A port of an actor, connected to a channel.
OptimalScheduleFinder._SetOfStates - Class in ptolemy.domains.sdf.optimize
A set of states, based on HashSet.
OptimalScheduleFinder._SortedSetOfStates - Class in ptolemy.domains.sdf.optimize
A sorted set of states.
OptimalScheduleFinder._State - Class in ptolemy.domains.sdf.optimize
State models a global state of the SDF graph and remembers the actor that was fired to reach it.
OptimalScheduleFinder._StateComparator - Class in ptolemy.domains.sdf.optimize
An abstract super class for Comparators to maintain a sorted list of states.
OptimalScheduleFinder._StateComparatorLowestValue - Class in ptolemy.domains.sdf.optimize
A Comparator to maintain a sorted list of states, sorted on their value.
OptimalScheduleFinder._StateComparatorMaximumProgress - Class in ptolemy.domains.sdf.optimize
A Comparator to maintain a sorted list of states, sorted on their progress to the final state.
OptimalScheduleFinder._TwoWayHashMap - Class in ptolemy.domains.sdf.optimize
A two-way hash map provides fast lookup in both directions of a bijective function between objects.
optimizationCriterion - Variable in class ptolemy.domains.sdf.optimize.OptimizingSDFDirector
Parameter defining the optimization criterion.
optimizationCriterion - Variable in class ptolemy.domains.sdf.optimize.OptimizingSDFScheduler
The optimization criterion to use.
OptimizingSDFDirector - Class in ptolemy.domains.sdf.optimize
Director for the synchronous dataflow (SDF) model of computation which finds an optimized schedule according to a defined criterion.
OptimizingSDFDirector(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.optimize.OptimizingSDFDirector
Construct on OptimizingSDFDirector in the given container with the given name.
OptimizingSDFDirector.OptimizationCriteria - Enum in ptolemy.domains.sdf.optimize
Enumeration type to define the supported optimization criteria.
OptimizingSDFScheduler - Class in ptolemy.domains.sdf.optimize
OptimizingSDFScheduler is the scheduler companion to the OptimizingSDFDirector It works with the synchronous dataflow (SDF) model of computation to find an optimized schedule according to a defined criterion.
OptimizingSDFScheduler(OptimizingSDFDirector, String, OptimizingSDFDirector.OptimizationCriteria) - Constructor for class ptolemy.domains.sdf.optimize.OptimizingSDFScheduler
Construct an instance of an OptimizingSDFScheduler.
optInt(int) - Method in class org.json.JSONArray
Get the optional int value associated with an index.
optInt(int, int) - Method in class org.json.JSONArray
Get the optional int value associated with an index.
optInt(String) - Method in class org.json.JSONObject
Get an optional int value associated with a key, or zero if there is no such key or if the value is not a number.
optInt(String, int) - Method in class org.json.JSONObject
Get an optional int value associated with a key, or the default if there is no such key or if the value is not a number.
OPTIONAL_L_PARAN - Static variable in class ptolemy.math.Precision.PrecisionFormat
Regular expression definition for an optional left parenthesis.
OPTIONAL_L_PARANBRACKET - Static variable in class ptolemy.math.Precision.PrecisionFormat
Regular expression definition for an optional left parenthesis or left bracket.
OPTIONAL_R_PARAN - Static variable in class ptolemy.math.Precision.PrecisionFormat
Regular expression definition for an optional right parenthesis.
OPTIONAL_R_PARANBRACKET - Static variable in class ptolemy.math.Precision.PrecisionFormat
Regular expression definition for an optional right parenthesis or left bracket.
OPTIONAL_U_OR_S_GROUP - Static variable in class ptolemy.math.Precision.PrecisionFormat
Regular expression for an optional 'S' or 'U' "group".
OPTIONAL_WHITE_SPACE - Static variable in class ptolemy.math.Precision.PrecisionFormat
Regular expression for optional white space.
options - Variable in class org.kepler.spark.mllib.SparkSQLQuery
Options map for SQL config
optJSONArray(int) - Method in class org.json.JSONArray
Get the optional JSONArray associated with an index.
optJSONArray(String) - Method in class org.json.JSONObject
Get an optional JSONArray associated with a key.
optJSONObject(int) - Method in class org.json.JSONArray
Get the optional JSONObject associated with an index.
optJSONObject(String) - Method in class org.json.JSONObject
Get an optional JSONObject associated with a key.
optLong(int) - Method in class org.json.JSONArray
Get the optional long value associated with an index.
optLong(int, long) - Method in class org.json.JSONArray
Get the optional long value associated with an index.
optLong(String) - Method in class org.json.JSONObject
Get an optional long value associated with a key, or zero if there is no such key or if the value is not a number.
optLong(String, long) - Method in class org.json.JSONObject
Get an optional long value associated with a key, or the default if there is no such key or if the value is not a number.
optString(int) - Method in class org.json.JSONArray
Get the optional string value associated with an index.
optString(int, String) - Method in class org.json.JSONArray
Get the optional string associated with an index.
optString(String) - Method in class org.json.JSONObject
Get an optional string associated with a key.
optString(String, String) - Method in class org.json.JSONObject
Get an optional string associated with a key.
optTypeSpecifier() - Method in class ptolemy.data.expr.PtParser
 
or(BooleanToken) - Method in class ptolemy.data.BooleanToken
Return a new token whose value is the logical OR of the value of this token and the the value of the argument token.
OR - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
OR_OPER - Static variable in class org.ecoinformatics.seek.querybuilder.DBWhereOperator
 
Oracle - Class in org.kepler.util.sql
An implementation of DatabaseType for Oracle.
Oracle() - Constructor for class org.kepler.util.sql.Oracle
Only this package (DatabaseFactory) can instantiate.
OrbImageSource - Class in org.ROADnet
This actor connects to an Antelope ORB and collects packets matching the given sourcename.
OrbImageSource(CompositeEntity, String) - Constructor for class org.ROADnet.OrbImageSource
 
OrbLogger - Class in org.ROADnet
This actor connects to an Antelope ORB and collects element values for weather elements such as temperature,pressure,humidity,wind.
OrbLogger(CompositeEntity, String) - Constructor for class org.ROADnet.OrbLogger
 
orbname - Variable in class org.ROADnet.OrbImageSource
The name of the orb to connect to, in the format "hostname:port".
orbname - Variable in class org.ROADnet.OrbLogger
The name of the orb to connect to, in the format "hostname:port".
orbname - Variable in class org.ROADnet.OrbPacketChannelExtractor
The name of the Antelope ORB to connect to, in the format "hostname:port".
orbname - Variable in class org.ROADnet.OrbPacketObjectSource
The name of the Antelope ORB to connect to, in the format "hostname:port".
orbname - Variable in class org.ROADnet.OrbSensorDataSource
The name of the orb to connect to, in the format "hostname:port".
orbname - Variable in class org.ROADnet.OrbWaveformSink
The name of the orb to connect to, in the format "hostname:port".
orbname - Variable in class org.ROADnet.OrbWaveformSource
The name of the orb to connect to, in the format "hostname:port".
OrbPacketChannelExtractor - Class in org.ROADnet
This actor receives OrbPacket objects ensconced in ObjectTokens and extracts any OrbPacketChannels from the OrbPackets and outputs them as OrbPacketChannel objects ensconced in ObjectTokens.
OrbPacketChannelExtractor(CompositeEntity, String) - Constructor for class org.ROADnet.OrbPacketChannelExtractor
 
OrbPacketObjectSource - Class in org.ROADnet
This actor connects to an Antelope ORB and provides a stream of OrbPacket objects to Ptolemy, delivered as ObjectTokens.
OrbPacketObjectSource(CompositeEntity, String) - Constructor for class org.ROADnet.OrbPacketObjectSource
 
OrbSensorDataSource - Class in org.ROADnet
This actor connects to an Antelope ORB and collects packets matching the given sourcename.
OrbSensorDataSource(CompositeEntity, String) - Constructor for class org.ROADnet.OrbSensorDataSource
 
OrbWaveformSink - Class in org.ROADnet
Ptolemy actor to send waveform data to an Antelope ORB
OrbWaveformSink(CompositeEntity, String) - Constructor for class org.ROADnet.OrbWaveformSink
 
OrbWaveformSource - Class in org.ROADnet
This actor connects to an Antelope ORB and collects packets matching the given sourcename, supplying samples from waveform packets to the channels of the output port.
OrbWaveformSource(CompositeEntity, String) - Constructor for class org.ROADnet.OrbWaveformSource
 
order - Variable in class org.kepler.gis.actor.VectorSort
The order to sort.
order - Variable in class ptolemy.actor.lib.Interpolator
The order of interpolation for non-index iterations.
order(DoubleToken) - Static method in class ptolemy.data.SmoothToken
Return the number of specified derivatives for the token.
order - Variable in class ptolemy.domains.sdf.lib.FFT
The order of the FFT.
order - Variable in class ptolemy.domains.sdf.lib.IFFT
The order of the IFFT.
order(int) - Static method in class ptolemy.math.SignalProcessing
Return the "order" of a transform size, i.e. the base-2 logarithm of the size.
OrderedMerge - Class in ptolemy.actor.lib
This actor merges two monotonically nondecreasing streams of tokens into one monotonically nondecreasing stream.
OrderedMerge(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.OrderedMerge
Construct an actor with the given container and name.
OrderedRecordAssembler - Class in ptolemy.actor.lib
On each firing, read one token from each input port and assemble them into a RecordToken.
OrderedRecordAssembler(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.OrderedRecordAssembler
Construct an OrderedRecordAssembler with the given container and name.
orderedRecordConstruct() - Method in class ptolemy.data.expr.PtParser
 
OrderedRecordToken - Class in ptolemy.data
A token that contains a set of label/token pairs.
OrderedRecordToken() - Constructor for class ptolemy.data.OrderedRecordToken
Construct an OrderedRecordToke with now fields.
OrderedRecordToken(Map<String, Token>) - Constructor for class ptolemy.data.OrderedRecordToken
Construct an OrderedRecordToken with the labels and values specified by a given Map object.
OrderedRecordToken(String) - Constructor for class ptolemy.data.OrderedRecordToken
Construct a RecordToken from the specified string.
OrderedRecordToken(String[], Token[]) - Constructor for class ptolemy.data.OrderedRecordToken
Construct an OrderedRecordToken with the specified labels and values.
OrderedResourceBundle - Class in ptolemy.util
Manage the resources for a locale using a set of static strings from a property file.
OrderedResourceBundle(InputStream) - Constructor for class ptolemy.util.OrderedResourceBundle
Construct an OrderedResourceBundle.
org.camera.service - package org.camera.service
 
org.cipres.kepler - package org.cipres.kepler
 
org.dart.matlab - package org.dart.matlab
 
org.ecoinformatics.seek.backprop - package org.ecoinformatics.seek.backprop
 
org.ecoinformatics.seek.dataquery - package org.ecoinformatics.seek.dataquery
 
org.ecoinformatics.seek.datasource - package org.ecoinformatics.seek.datasource
 
org.ecoinformatics.seek.datasource.darwincore - package org.ecoinformatics.seek.datasource.darwincore
 
org.ecoinformatics.seek.datasource.eml.eml2 - package org.ecoinformatics.seek.datasource.eml.eml2
 
org.ecoinformatics.seek.ecogrid - package org.ecoinformatics.seek.ecogrid
 
org.ecoinformatics.seek.ecogrid.exception - package org.ecoinformatics.seek.ecogrid.exception
 
org.ecoinformatics.seek.ecogrid.quicksearch - package org.ecoinformatics.seek.ecogrid.quicksearch
 
org.ecoinformatics.seek.garp - package org.ecoinformatics.seek.garp
 
org.ecoinformatics.seek.gis.gdal - package org.ecoinformatics.seek.gis.gdal
 
org.ecoinformatics.seek.gis.grass - package org.ecoinformatics.seek.gis.grass
 
org.ecoinformatics.seek.gis.java_gis - package org.ecoinformatics.seek.gis.java_gis
 
org.ecoinformatics.seek.querybuilder - package org.ecoinformatics.seek.querybuilder
 
org.ecoinformatics.seek.R - package org.ecoinformatics.seek.R
 
org.ecoinformatics.seek.sms - package org.ecoinformatics.seek.sms
 
org.ecoinformatics.seek.taxon - package org.ecoinformatics.seek.taxon
 
org.ecoinformatics.seek.util - package org.ecoinformatics.seek.util
 
org.eol - package org.eol
 
org.geon - package org.geon
 
org.json - package org.json
The JavaScript Object Notation (JSON) package.
org.kepler - package org.kepler
 
org.kepler.actor - package org.kepler.actor
 
org.kepler.actor.database - package org.kepler.actor.database
 
org.kepler.actor.gsissh - package org.kepler.actor.gsissh
 
org.kepler.actor.gui - package org.kepler.actor.gui
 
org.kepler.actor.io - package org.kepler.actor.io
 
org.kepler.actor.job - package org.kepler.actor.job
 
org.kepler.actor.preview - package org.kepler.actor.preview
 
org.kepler.actor.rest - package org.kepler.actor.rest
 
org.kepler.actor.ssh - package org.kepler.actor.ssh
 
org.kepler.authentication - package org.kepler.authentication
 
org.kepler.authentication.gui - package org.kepler.authentication.gui
 
org.kepler.bio.actor - package org.kepler.bio.actor
 
org.kepler.bio.hadoop.input - package org.kepler.bio.hadoop.input
 
org.kepler.bio.stratosphere.input - package org.kepler.bio.stratosphere.input
 
org.kepler.bio.util - package org.kepler.bio.util
 
org.kepler.cloudsharing.actor - package org.kepler.cloudsharing.actor
 
org.kepler.cloudsharing.fs - package org.kepler.cloudsharing.fs
 
org.kepler.cloudsharing.gui - package org.kepler.cloudsharing.gui
 
org.kepler.cloudsharing.util - package org.kepler.cloudsharing.util
 
org.kepler.configuration - package org.kepler.configuration
 
org.kepler.data.conversion - package org.kepler.data.conversion
 
org.kepler.data.conversion.binary - package org.kepler.data.conversion.binary
 
org.kepler.data.datasource.dataone - package org.kepler.data.datasource.dataone
 
org.kepler.data.datasource.dataturbine - package org.kepler.data.datasource.dataturbine
 
org.kepler.data.netcdf - package org.kepler.data.netcdf
 
org.kepler.dataproxy.datasource - package org.kepler.dataproxy.datasource
 
org.kepler.dataproxy.datasource.geon - package org.kepler.dataproxy.datasource.geon
 
org.kepler.dataproxy.datasource.opendap - package org.kepler.dataproxy.datasource.opendap
 
org.kepler.dataproxy.metadata.ADN - package org.kepler.dataproxy.metadata.ADN
 
org.kepler.date - package org.kepler.date
 
org.kepler.ddp - package org.kepler.ddp
 
org.kepler.ddp.actor - package org.kepler.ddp.actor
 
org.kepler.ddp.actor.pattern - package org.kepler.ddp.actor.pattern
 
org.kepler.ddp.actor.pattern.stub - package org.kepler.ddp.actor.pattern.stub
 
org.kepler.ddp.director - package org.kepler.ddp.director
 
org.kepler.ddp.gui - package org.kepler.ddp.gui
 
org.kepler.domains - package org.kepler.domains
 
org.kepler.gis.actor - package org.kepler.gis.actor
 
org.kepler.gis.actor.bbox - package org.kepler.gis.actor.bbox
 
org.kepler.gis.actor.calc - package org.kepler.gis.actor.calc
 
org.kepler.gis.actor.conversions - package org.kepler.gis.actor.conversions
 
org.kepler.gis.actor.farsite - package org.kepler.gis.actor.farsite
 
org.kepler.gis.actor.io - package org.kepler.gis.actor.io
 
org.kepler.gis.actor.kml - package org.kepler.gis.actor.kml
 
org.kepler.gis.actor.landscape - package org.kepler.gis.actor.landscape
 
org.kepler.gis.actor.proj - package org.kepler.gis.actor.proj
 
org.kepler.gis.actor.pylaski - package org.kepler.gis.actor.pylaski
 
org.kepler.gis.actor.windninja - package org.kepler.gis.actor.windninja
 
org.kepler.gis.arcgis - package org.kepler.gis.arcgis
 
org.kepler.gis.data - package org.kepler.gis.data
 
org.kepler.gis.display - package org.kepler.gis.display
 
org.kepler.gis.util - package org.kepler.gis.util
 
org.kepler.gui - package org.kepler.gui
 
org.kepler.gui.component - package org.kepler.gui.component
 
org.kepler.gui.controller - package org.kepler.gui.controller
 
org.kepler.gui.frame - package org.kepler.gui.frame
 
org.kepler.gui.kar - package org.kepler.gui.kar
 
org.kepler.gui.lsid - package org.kepler.gui.lsid
 
org.kepler.gui.memory - package org.kepler.gui.memory
 
org.kepler.gui.popups - package org.kepler.gui.popups
 
org.kepler.gui.state - package org.kepler.gui.state
 
org.kepler.hadoop.actor - package org.kepler.hadoop.actor
 
org.kepler.hadoop.director - package org.kepler.hadoop.director
 
org.kepler.hadoop.execution - package org.kepler.hadoop.execution
 
org.kepler.hadoop.io - package org.kepler.hadoop.io
 
org.kepler.hadoop.io.input - package org.kepler.hadoop.io.input
 
org.kepler.hadoop.io.output - package org.kepler.hadoop.io.output
 
org.kepler.hadoop.mapreduce - package org.kepler.hadoop.mapreduce
 
org.kepler.hadoop.util - package org.kepler.hadoop.util
 
org.kepler.icon - package org.kepler.icon
 
org.kepler.io - package org.kepler.io
 
org.kepler.io.test - package org.kepler.io.test
 
org.kepler.job - package org.kepler.job
 
org.kepler.kar - package org.kepler.kar
 
org.kepler.kar.handlers - package org.kepler.kar.handlers
 
org.kepler.kar.karxml - package org.kepler.kar.karxml
 
org.kepler.loader - package org.kepler.loader
 
org.kepler.loader.util - package org.kepler.loader.util
 
org.kepler.metadata - package org.kepler.metadata
 
org.kepler.module - package org.kepler.module
 
org.kepler.module.biokepler - package org.kepler.module.biokepler
 
org.kepler.module.cloudsharing - package org.kepler.module.cloudsharing
 
org.kepler.module.core - package org.kepler.module.core
 
org.kepler.module.ddpcommon - package org.kepler.module.ddpcommon
 
org.kepler.module.gis - package org.kepler.module.gis
 
org.kepler.module.gui - package org.kepler.module.gui
 
org.kepler.module.hadoop - package org.kepler.module.hadoop
 
org.kepler.module.provenance - package org.kepler.module.provenance
 
org.kepler.module.reporting - package org.kepler.module.reporting
 
org.kepler.module.spark - package org.kepler.module.spark
 
org.kepler.module.stratosphere - package org.kepler.module.stratosphere
 
org.kepler.module.tagging - package org.kepler.module.tagging
 
org.kepler.module.webview - package org.kepler.module.webview
 
org.kepler.module.workflowrunmanager - package org.kepler.module.workflowrunmanager
 
org.kepler.module.workflowschedulergui - package org.kepler.module.workflowschedulergui
 
org.kepler.modulemanager - package org.kepler.modulemanager
 
org.kepler.modulemanager.gui - package org.kepler.modulemanager.gui
 
org.kepler.modulemanager.gui.patch - package org.kepler.modulemanager.gui.patch
 
org.kepler.moml - package org.kepler.moml
 
org.kepler.moml.filter - package org.kepler.moml.filter
 
org.kepler.monitor - package org.kepler.monitor
 
org.kepler.monitor.figure - package org.kepler.monitor.figure
 
org.kepler.monitor.test - package org.kepler.monitor.test
 
org.kepler.objectmanager - package org.kepler.objectmanager
 
org.kepler.objectmanager.cache - package org.kepler.objectmanager.cache
 
org.kepler.objectmanager.cache.browser - package org.kepler.objectmanager.cache.browser
 
org.kepler.objectmanager.classloader - package org.kepler.objectmanager.classloader
 
org.kepler.objectmanager.data - package org.kepler.objectmanager.data
 
org.kepler.objectmanager.data.db - package org.kepler.objectmanager.data.db
 
org.kepler.objectmanager.data.text - package org.kepler.objectmanager.data.text
 
org.kepler.objectmanager.library - package org.kepler.objectmanager.library
 
org.kepler.objectmanager.lsid - package org.kepler.objectmanager.lsid
 
org.kepler.objectmanager.repository - package org.kepler.objectmanager.repository
 
org.kepler.plotting - package org.kepler.plotting
 
org.kepler.plotting.table - package org.kepler.plotting.table
 
org.kepler.profiling.gui - package org.kepler.profiling.gui
 
org.kepler.provenance - package org.kepler.provenance
 
org.kepler.provenance.actor - package org.kepler.provenance.actor
 
org.kepler.provenance.gui - package org.kepler.provenance.gui
 
org.kepler.provenance.kar - package org.kepler.provenance.kar
 
org.kepler.provenance.manager - package org.kepler.provenance.manager
 
org.kepler.provenance.opm - package org.kepler.provenance.opm
 
org.kepler.provenance.prov - package org.kepler.provenance.prov
 
org.kepler.provenance.sql - package org.kepler.provenance.sql
 
org.kepler.reporting - package org.kepler.reporting
 
org.kepler.reporting.gui - package org.kepler.reporting.gui
 
org.kepler.reporting.rio - package org.kepler.reporting.rio
 
org.kepler.reporting.rio.fop - package org.kepler.reporting.rio.fop
 
org.kepler.reporting.rio.fop.tools - package org.kepler.reporting.rio.fop.tools
 
org.kepler.reporting.rio.gui - package org.kepler.reporting.rio.gui
 
org.kepler.reporting.rio.test - package org.kepler.reporting.rio.test
 
org.kepler.reporting.rio.util - package org.kepler.reporting.rio.util
 
org.kepler.reporting.roml - package org.kepler.reporting.roml
 
org.kepler.scriptengine - package org.kepler.scriptengine
 
org.kepler.scriptengine.java - package org.kepler.scriptengine.java
 
org.kepler.sms - package org.kepler.sms
 
org.kepler.sms.actors - package org.kepler.sms.actors
 
org.kepler.sms.gui - package org.kepler.sms.gui
 
org.kepler.sms.util - package org.kepler.sms.util
 
org.kepler.spark.actor - package org.kepler.spark.actor
 
org.kepler.spark.director - package org.kepler.spark.director
 
org.kepler.spark.examples - package org.kepler.spark.examples
 
org.kepler.spark.mllib - package org.kepler.spark.mllib
 
org.kepler.spark.operator - package org.kepler.spark.operator
 
org.kepler.spark.stub - package org.kepler.spark.stub
 
org.kepler.spark.type - package org.kepler.spark.type
 
org.kepler.spark.util - package org.kepler.spark.util
 
org.kepler.ssh - package org.kepler.ssh
 
org.kepler.stratosphere.director - package org.kepler.stratosphere.director
 
org.kepler.stratosphere.io.input - package org.kepler.stratosphere.io.input
 
org.kepler.stratosphere.io.output - package org.kepler.stratosphere.io.output
 
org.kepler.stratosphere.stub - package org.kepler.stratosphere.stub
 
org.kepler.stratosphere.type - package org.kepler.stratosphere.type
 
org.kepler.tagging - package org.kepler.tagging
 
org.kepler.tagging.gui - package org.kepler.tagging.gui
 
org.kepler.tagging.util - package org.kepler.tagging.util
 
org.kepler.util - package org.kepler.util
 
org.kepler.util.sql - package org.kepler.util.sql
 
org.kepler.webview.actor - package org.kepler.webview.actor
 
org.kepler.webview.data - package org.kepler.webview.data
 
org.kepler.webview.provenance - package org.kepler.webview.provenance
 
org.kepler.webview.server - package org.kepler.webview.server
 
org.kepler.webview.server.app - package org.kepler.webview.server.app
 
org.kepler.webview.server.app.ro - package org.kepler.webview.server.app.ro
 
org.kepler.webview.server.auth - package org.kepler.webview.server.auth
 
org.kepler.webview.server.handler - package org.kepler.webview.server.handler
 
org.kepler.workflow - package org.kepler.workflow
 
org.kepler.workflowrunmanager - package org.kepler.workflowrunmanager
 
org.kepler.workflowrunmanager.gui - package org.kepler.workflowrunmanager.gui
 
org.kepler.workflowrunmanager.gui.kar - package org.kepler.workflowrunmanager.gui.kar
 
org.kepler.workflowscheduler.gui - package org.kepler.workflowscheduler.gui
 
org.kepler.workflowscheduler.gui.configurationwizard - package org.kepler.workflowscheduler.gui.configurationwizard
 
org.mlc.swing.example - package org.mlc.swing.example
FormLayoutMaker examples.
org.mlc.swing.layout - package org.mlc.swing.layout
FormLayoutMaker layout classes.
org.nees - package org.nees
 
org.ptolemy.classloading - package org.ptolemy.classloading
The interfaces and non-OSGi implementation of the ClassLoadingStrategy support.
org.ptolemy.classloading.osgi - package org.ptolemy.classloading.osgi
The implementations that are used in an OSGi-based Ptolemy II runtime (remark that they do not have any dependency on OSGi APIs).
org.ptolemy.commons - package org.ptolemy.commons
This packagecontains the VersionSpecification abstract class and its only currently existing implementation; plus FutureValue: a Future implementation that can be used outside of the JDK ExecutorService.
org.resurgence.actor - package org.resurgence.actor
 
org.ROADnet - package org.ROADnet
 
org.sdm.spa - package org.sdm.spa
 
org.sdm.spa.actors.io - package org.sdm.spa.actors.io
 
org.sdm.spa.actors.piw.viz - package org.sdm.spa.actors.piw.viz
 
org.sdm.spa.actors.transport - package org.sdm.spa.actors.transport
 
org.sdm.spa.actors.transport.vo - package org.sdm.spa.actors.transport.vo
 
org.sdm.spa.gui - package org.sdm.spa.gui
 
org.sdm.spa.util - package org.sdm.spa.util
 
org.skidlkit - package org.skidlkit
 
org.srb - package org.srb
 
org.surge - package org.surge
 
orientation - Variable in class ptolemy.actor.gui.properties.Separator
The orientation of the JSeparator, which should be either "Horizontal" or "Vertical".
originalValue - Variable in class org.ROADnet.QAQC
The output port.
originalVersionOf(Object) - Method in interface ptolemy.graph.analysis.analyzer.Transformer
Return the original version of given object in the transformed graph.
originalVersionOf(Object) - Method in class ptolemy.graph.analysis.MirrorTransformation
Return the original version of given object in the transformed graph.
originalVersionOf(Object) - Method in class ptolemy.graph.analysis.strategy.ClusterNodesTransformerStrategy
Unsupported operation.
originalVersionOf(Object) - Method in class ptolemy.graph.analysis.strategy.MirrorTransformerStrategy
Return the original version of given object in the transformed graph.
originalx - Variable in class ptolemy.plot.PlotPoint
Original value of x before wrapping.
OrthogonalCom - Class in ptolemy.domains.sdf.demo.OrthogonalCom
An binary, orthogonal communication system.
OrthogonalCom(Workspace) - Constructor for class ptolemy.domains.sdf.demo.OrthogonalCom.OrthogonalCom
Construct the orthogonal communication system.
orthogonalizeColumns(Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new matrix that is formed by orthogonalizing the columns of the input matrix (the column vectors are orthogonal).
orthogonalizeColumns(double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new matrix that is formed by orthogonalizing the columns of the input matrix (the column vectors are orthogonal).
orthogonalizeColumns(float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Return a new matrix that is formed by orthogonalizing the columns of the input matrix (the column vectors are orthogonal).
orthogonalizeRows(Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new matrix that is formed by orthogonalizing the rows of the input matrix (the row vectors are orthogonal).
orthogonalizeRows(double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new matrix that is formed by orthogonalizing the rows of the input matrix (the row vectors are orthogonal).
orthogonalizeRows(float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Return a new matrix that is formed by orthogonalizing the rows of the input matrix (the row vectors are orthogonal).
orthonormalizeColumns(Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new matrix that is formed by orthonormalizing the columns of the input matrix (the column vectors are orthogonal and have norm 1).
orthonormalizeColumns(double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new matrix that is formed by orthonormalizing the columns of the input matrix (the column vectors are orthogonal and have norm 1).
orthonormalizeColumns(float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Return a new matrix that is formed by orthogonalizing the columns of the input matrix (the column vectors are orthogonal and have norm 1).
orthonormalizeRows(Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new matrix that is formed by orthonormalizing the rows of the input matrix (the row vectors are orthogonal and have norm 1).
orthonormalizeRows(double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new matrix that is formed by orthonormalizing the rows of the input matrix (the row vectors are orthogonal and have norm 1).
orthonormalizeRows(float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Return a new matrix that is formed by orthonormalizing the rows of the input matrix (the row vectors are orthogonal and have norm 1).
OS - Static variable in class org.camera.service.ServiceUtils
 
OSExtension - Interface in org.kepler
This interface should be implemented by any class that wishes to add OS specific extensions to kepler.
OSGiClassLoadingStrategy - Class in org.ptolemy.classloading.osgi
This is the preferred ClassLoadingStrategy implementation in a full-blown OSGi-based runtime.
OSGiClassLoadingStrategy() - Constructor for class org.ptolemy.classloading.osgi.OSGiClassLoadingStrategy
 
OTHERENTITY - Static variable in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200Parser
 
OTHERENTITY - Static variable in class org.kepler.objectmanager.data.db.Entity
 
oTimes(Dependency) - Method in class ptolemy.actor.util.BooleanDependency
Return a dependency that results from serial composition of this one and the specified one.
oTimes(Dependency) - Method in interface ptolemy.actor.util.Dependency
Return a dependency that results from serial composition of this one and the specified one.
oTimes(Dependency) - Method in class ptolemy.actor.util.RealDependency
Return a dependency that results from serial composition of this one and the specified one.
oTimes(Dependency) - Method in class ptolemy.actor.util.SuperdenseDependency
Return a dependency that results from serial composition of this one and the specified one.
OTIMES_IDENTITY - Static variable in class ptolemy.actor.util.BooleanDependency
The multiplicative identity, which has value true and indicates that there is a dependency.
OTIMES_IDENTITY - Static variable in class ptolemy.actor.util.RealDependency
The multiplicative identity.
OTIMES_IDENTITY - Static variable in class ptolemy.actor.util.SuperdenseDependency
The multiplicative identity.
oTimesIdentity() - Method in class ptolemy.actor.util.BooleanDependency
Return the dependency that when multiplied by any other dependency using oTimes() yields the other dependency.
oTimesIdentity() - Method in interface ptolemy.actor.util.Dependency
Return the dependency that when multiplied by any other dependency using oTimes() yields the other dependency.
oTimesIdentity() - Method in class ptolemy.actor.util.RealDependency
Return the dependency that when multiplied by any other dependency using oTimes() yields the other dependency.
oTimesIdentity() - Method in class ptolemy.actor.util.SuperdenseDependency
Return the dependency that when multiplied by any other dependency using oTimes() yields the other dependency.
out - Variable in class org.kepler.ddp.actor.pattern.DDPDataSink
After data has been written, this port outputs the path.
out - Variable in class org.kepler.ddp.actor.pattern.DDPDataSource
Data output.
out - Variable in class org.kepler.ddp.actor.pattern.SingleInputPatternActor
Data output.
out - Variable in class org.kepler.ddp.actor.pattern.stub.StubSinkActor
Output port of key-value pairs.
out - Variable in class org.kepler.gis.actor.farsite.GenerateWindFile
The name of the output file.
out - Variable in class org.kepler.gis.actor.landscape.CreateLandscape
Path and name of landscape file that's created.
out - Variable in class org.kepler.hadoop.io.output.ValueOnlyOutputWriter
 
out - Variable in class org.kepler.spark.mllib.CreateLabeledPoint
RDD of LabeledPoints.
out - Variable in class org.kepler.spark.mllib.CreateVectorRDD
An RDD of Vectors.
out - Variable in class org.kepler.spark.mllib.ExtractColumns
An RDD of Vectors.
out - Variable in class org.kepler.spark.mllib.RemoveNulls
An RDD of Vectors.
out - Variable in class org.kepler.spark.mllib.SparkSQLQuery
The DataFrame resulting from the SparkSQL query
out - Variable in class ptolemy.domains.de.test.CancelFireAtTest
The output.
out - Variable in class ptolemy.domains.de.test.SuperdenseTimeTest
The inputs and output.
out - Variable in class ptolemy.domains.pn.demo.QR.ND_5
 
OUT_RESULT - Static variable in class org.kepler.gis.actor.calc.JiffleProcess
 
outAverageGenomeSize - Variable in class org.camera.service.AverageGenomeSizeParserV2
Outputs the average genome size
outData - Variable in class org.kepler.spark.mllib.ConvertColumns
The output DataFrame
outData - Variable in class org.kepler.spark.mllib.DatasetToJson
JSON string output
outData - Variable in class org.kepler.spark.mllib.DropColumns
Dataset output
outData - Variable in class org.kepler.spark.mllib.KMeansApply
Dataframe output w/kmeans distance space vector
outData - Variable in class org.kepler.spark.mllib.RemoveRowsWithNulls
New DataFrame without null rows
outData - Variable in class org.kepler.spark.mllib.SantaAnaDetect
Dataframe output
outData - Variable in class org.kepler.spark.mllib.Standardize
Standardized data set as an RDD of Vectors.
outData - Variable in class org.kepler.spark.mllib.StandardizeApply
Dataframe output
outData - Variable in class org.kepler.spark.mllib.VectorAssemble
Standardized data set as an RDD of Vectors.
OutDir - Variable in class org.sdm.spa.ProcessFileRT
 
outEdges(Object) - Method in class ptolemy.vergil.actor.ActorGraphModel.ExternalPortModel
Return an iterator over the edges coming out of the given node.
outEdges(Object) - Method in class ptolemy.vergil.actor.ActorGraphModel.IconModel
Return an iterator over the edges coming out of the given node.
outEdges(Object) - Method in class ptolemy.vergil.actor.ActorGraphModel.PortModel
Return an iterator over the edges coming out of the given node.
outEdges(Object) - Method in class ptolemy.vergil.actor.ActorGraphModel.VertexModel
Return an iterator over the edges coming into the given node.
outEdges(Object) - Method in class ptolemy.vergil.kernel.AttributeNodeModel
Return an iterator over the edges coming out of the given node.
outEdges(Object) - Method in class ptolemy.vergil.modal.FSMGraphModel.PortModel
Return an iterator over the edges coming into the given node.
outEdges(Object) - Method in class ptolemy.vergil.modal.FSMGraphModel.StateModel
Return an iterator over the edges coming into the given node.
outFile - Variable in class org.geon.Interpolate
 
outfile - Variable in class org.sdm.spa.DelayStreamToASpecificElement
The output file info record.
outfileHandle - Variable in class org.sdm.spa.CommandLine
 
outfileHandle - Variable in class org.sdm.spa.CommandLineExec
A string that forwards the outputFile parameter if it exists.
outfileHandle - Variable in class org.srb.SRBProxyCommand
The output file path, if exists.
outFileName - Variable in class org.ecoinformatics.seek.gis.grass.GrassExportActor
 
outFilepath - Variable in class org.kepler.spark.mllib.KMeansClustering
Filepath for JSON output
outFilepath - Variable in class org.kepler.spark.mllib.SantaAnaIdentify
Parameter to store string for output JSON file
outFilepath - Variable in class org.kepler.spark.mllib.Standardize
Parameter to store string for output JSON file
outgoingPort - Variable in class ptolemy.domains.modal.kernel.State
The port linking outgoing transitions.
outKeyValueTypes - Variable in class org.kepler.ddp.actor.pattern.SingleInputPatternActor
The output key value types.
OutlineComponentPopup - Class in org.kepler.gui.popups
Subclass of NoLiidLibraryPopup that handles Components that are contained within the workflow Outline view.
OutlineComponentPopup(TreePath, Component) - Constructor for class org.kepler.gui.popups.OutlineComponentPopup
 
OutlinePopupListener - Class in org.kepler.gui.popups
A mouse listener for the Outline view.
OutlinePopupListener(AnnotatedPTree) - Constructor for class org.kepler.gui.popups.OutlinePopupListener
 
output - Variable in class org.dart.matlab.MatlabExpression
The output port.
output - Variable in class org.ecoinformatics.seek.R.RExpression
The output port.
output - Variable in class org.ecoinformatics.seek.R.RExpression2
The output port.
output - Variable in class org.ecoinformatics.seek.util.FieldChooser
 
output - Variable in class org.geon.AddPointToSVG
Outputs the SVG output file path.
output - Variable in class org.geon.Duplicator
Output token.
output - Variable in class org.geon.FileExists
Output.
output - Variable in class org.geon.FilterUI
The selected items.
output - Variable in class org.geon.GridOverlay
 
output - Variable in class org.geon.Interpolate
A string representation of the gridded output
output - Variable in class org.geon.SVGConcat
Output SVG output file URL.
output - Variable in class org.geon.URLExists
Boolean output specifying whether the element is contained in the array.
output - Variable in class org.geon.XMLToADN
ADN schema string.
output - Variable in class org.kepler.actor.ArrayFilter
The filtered array.
output - Variable in class org.kepler.actor.DecimalFormatConverter
The output port, which contains the new directory path.
output - Variable in class org.kepler.actor.RecordOperation
The resulting record token.
output - Variable in class org.kepler.bio.actor.BlastTabularResultMerge
The output port, which contains the new directory path.
output - Variable in class org.kepler.data.conversion.ArrayOfRecordsToRecordOfArrays
The output record of arrays.
output - Variable in class org.kepler.date.DateDifference
The difference between the dates.
output - Variable in class org.kepler.date.DateSequence
The sequence of dates.
output - Variable in class org.kepler.gis.actor.bbox.CreateBoundingBox
The bounding box.
output - Variable in class org.kepler.gis.actor.bbox.ScaleBoundingBox
The bounding box of the data set.
output - Variable in class org.kepler.gis.actor.calc.Difference
Vector data from input1 with the geometries replaced by the difference.
output - Variable in class org.kepler.gis.actor.calc.JiffleRasterCalculator
Raster output.
output - Variable in class org.kepler.gis.actor.GetBoundingBox
The bounding box of the data set.
output - Variable in class org.kepler.gis.actor.kml.KMLWriter
The name of the output file is sent to this port when the data has been written.
output - Variable in class org.kepler.gis.actor.kml.WriteTimestampToKML
The name of the updated KML file.
output - Variable in class org.kepler.gis.actor.proj.Reproject
Reprojected GIS data set.
output - Variable in class org.kepler.gis.actor.pylaski.GetPylaskiMeasurements
 
output - Variable in class org.kepler.gis.actor.VectorCombineFiles
A feature data set.
output - Variable in class org.kepler.provenance.actor.AddProvenanceKeyValues
The value from the input port is copied when execution is complete.
OUTPUT - Static variable in class org.kepler.sms.gui.PortSemanticTypeEditorPane
 
OUTPUT - Static variable in class org.kepler.sms.gui.SuggestCompatibleOperation
 
output - Variable in class org.kepler.spark.mllib.GetLiveMeasurements
 
output - Variable in class org.ROADnet.OrbImageSource
Samples from incoming waveform packets appear on this port.
output - Variable in class org.ROADnet.OrbPacketChannelExtractor
Packets reaped from the ORB will appear on this port as Ptolemy ObjectTokens.
output - Variable in class org.ROADnet.OrbPacketObjectSource
Packets reaped from the ORB will appear on this port as Ptolemy ObjectTokens.
output - Variable in class org.ROADnet.OrbSensorDataSource
Samples from incoming waveform packets appear on this port.
output - Variable in class org.ROADnet.OrbWaveformSource
Samples from incoming waveform packets appear on this port.
output - Variable in class org.sdm.spa.ArrayPermute
The permutation output.
output - Variable in class org.sdm.spa.CommandLine
 
output - Variable in class org.sdm.spa.CommandLineExec
The result stream of the command.
output - Variable in class org.sdm.spa.EnumItemTriggered
 
output - Variable in class org.sdm.spa.gui.UserInteractiveShell
The output port.
output - Variable in class org.sdm.spa.SoaplabChooseOperation
Outputs the username and input values to next actor namely "SoaplabServiceStarter"
output - Variable in class org.sdm.spa.SoaplabChooseResultType
output string value from the get_<name> operation
output - Variable in class org.sdm.spa.SoaplabServiceStarter
The output is the soaplab service client itself, forwarded to other others such as SoaplabAnalysis
output - Variable in class org.sdm.spa.SyncOnTerminator
The output token, which is always the input token.
output - Variable in class org.sdm.spa.TextualInteractionShell
 
output - Variable in class org.sdm.spa.XMLUpdater
The output port that writes the XML document.
output - Variable in class org.skidlkit.TextFileReader
 
output - Variable in class org.srb.SRBProxyCommand
The result stream of the command.
output - Variable in class org.srb.SRBReader
Output.
output - Variable in class org.surge.RecordMerger
 
output - Variable in class org.surge.StringsToRecord
 
output - Variable in class ptolemy.actor.lib.AddSubtract
Output port.
output - Variable in class ptolemy.actor.lib.ArrayContains
Boolean output specifying whether the element is contained in the array.
output - Variable in class ptolemy.actor.lib.ArrayLevelCrossing
The output port producing the index of the first bin to break the threshold.
output - Variable in class ptolemy.actor.lib.ArrayRemoveElement
The resulting output array.
output - Variable in class ptolemy.actor.lib.BooleanMultiplexor
The output port.
output - Variable in class ptolemy.actor.lib.BooleanSelect
The output port.
output - Variable in class ptolemy.actor.lib.BusAssembler
The input port.
output - Variable in class ptolemy.actor.lib.ComputeHistogram
The input port of type array of integer.
output - Variable in class ptolemy.actor.lib.ConfigurationSelect
The output port.
output - Variable in class ptolemy.actor.lib.conversions.CartesianToComplex
The port for the output, which has type ComplexToken.
output - Variable in class ptolemy.actor.lib.conversions.PolarToComplex
The port for the output, which has type ComplexToken.
output - Variable in class ptolemy.actor.lib.conversions.StringToIntArray
The output port, which has type {int}.
output - Variable in class ptolemy.actor.lib.Counter
The output port with type IntToken.
output - Variable in class ptolemy.actor.lib.DateConstructor
The output for the constructed date.
output - Variable in class ptolemy.actor.lib.Default
The output port.
output - Variable in class ptolemy.actor.lib.Expression
The output port.
output - Variable in class ptolemy.actor.lib.gui.EventButton
The output port.
output - Variable in class ptolemy.actor.lib.gui.InteractiveDialog
The output port.
output - Variable in class ptolemy.actor.lib.gui.InteractiveShell
The output port.
output - Variable in class ptolemy.actor.lib.gui.SketchedSource
The output port.
output - Variable in class ptolemy.actor.lib.hoc.ApplyFunction
The output port.
output - Variable in class ptolemy.actor.lib.hoc.ApplyFunctionOverSequence
Deprecated.
The output port.
output - Variable in class ptolemy.actor.lib.hoc.MobileFunction
Deprecated.
The output port.
output - Variable in class ptolemy.actor.lib.hoc.MobileModel
The output port for the result after firing the inside model upon the incoming data.
output - Variable in class ptolemy.actor.lib.logic.Comparator
The output port, which has type boolean.
output - Variable in class ptolemy.actor.lib.MathFunction
Deprecated.
Output port.
output - Variable in class ptolemy.actor.lib.ModifyDate
Output for the new date token.
output - Variable in class ptolemy.actor.lib.MultiplyDivide
Output port.
output - Variable in class ptolemy.actor.lib.OrderedMerge
The output port, which has the same type as the input ports.
output - Variable in class ptolemy.actor.lib.Publisher
The output port.
output - Variable in class ptolemy.actor.lib.r.RExpression
The output port.
output - Variable in class ptolemy.actor.lib.r.RExpression2
The output port.
output - Variable in class ptolemy.actor.lib.RecordAssembler
The output port.
output - Variable in class ptolemy.actor.lib.RecordUpdater
The output port.
output - Variable in class ptolemy.actor.lib.Sequence
The output port.
output - Variable in class ptolemy.actor.lib.SequentialClock
Deprecated.
The output port.
output - Variable in class ptolemy.actor.lib.SetVariable
The output port.
output - Variable in class ptolemy.actor.lib.SingleEvent
The output port.
output - Variable in class ptolemy.actor.lib.Source
The output port.
output - Variable in class ptolemy.actor.lib.string.StringCompare
The output port for the result of type BooleanToken.
output - Variable in class ptolemy.actor.lib.string.StringIndexOf
Output producing the index of the searchFor string, if it is found, and -1 otherwise.
output - Variable in class ptolemy.actor.lib.string.StringMatches
Output is true if the pattern exists in the string, false otherwise.
output - Variable in class ptolemy.actor.lib.string.StringReplace
The output port on which the edited string is produced.
output - Variable in class ptolemy.actor.lib.string.StringSimpleReplace
Deprecated.
The output port on which the edited string is produced.
output - Variable in class ptolemy.actor.lib.Subscriber
The output port.
output - Variable in class ptolemy.actor.lib.Test
Boolean output that is false as long as there is data to compare against the input, but becomes true on the first firing after such data has been exhausted.
output - Variable in class ptolemy.actor.lib.Transformer
The output port.
output - Variable in class ptolemy.actor.lib.tutorial.SimpleALU
Output port.
output - Variable in class ptolemy.actor.lib.tutorial.StaticALU
Output port.
output - Variable in class ptolemy.actor.lib.UnionMerge
The output port.
output - Variable in class ptolemy.actor.test.IdentityActor
 
output - Variable in class ptolemy.component.ComponentActor
 
output - Variable in class ptolemy.component.test.Counter
The output port with type IntToken.
output - Variable in class ptolemy.domains.continuous.lib.ContinuousTransferFunction
Single output port.
output - Variable in class ptolemy.domains.continuous.lib.EventSource
Deprecated.
The output port.
output - Variable in class ptolemy.domains.continuous.lib.LevelCrossingDetector
The output port.
output - Variable in class ptolemy.domains.continuous.lib.LinearStateSpace
Multi-output port.
output - Variable in class ptolemy.domains.ddf.lib.DDFBooleanSelect
The output port.
output - Variable in class ptolemy.domains.ddf.lib.DDFSelect
The output port.
output - Variable in class ptolemy.domains.de.demo.SmartSender.SmartSender
The output port, which has type int.
output - Variable in class ptolemy.domains.de.lib.DETransformer
The output port.
output - Variable in class ptolemy.domains.de.lib.test.TestSource
 
output - Variable in class ptolemy.domains.de.lib.TestActorPortDepth
The output, which has type string.
output - Variable in class ptolemy.domains.de.lib.TimeCompare
The output port to which difference values are sent.
output - Variable in class ptolemy.domains.de.lib.WaitingTime
The output, which is always a DoubleToken representing the that a waiter waited for an input at the waitee input.
output - Variable in class ptolemy.domains.pn.kernel.NondeterministicMerge
The output port.
output - Variable in class ptolemy.domains.pn.kernel.test.TestDirector
 
output - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestDelay
 
output - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestJoin
 
output - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestRamp
 
output - Variable in class ptolemy.domains.sdf.lib.DotProduct
The output port, which has type ScalarToken.
output - Variable in class ptolemy.domains.sdf.lib.SDFTransformer
The output port.
output - Variable in class ptolemy.domains.sdf.lib.vq.PSNR
The calculated PSNR between the two inputs.
output - Variable in class ptolemy.matlab.Expression
The output port.
output1 - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestSplit
 
output1_tokenProductionRate - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestSplit
 
output2 - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestSplit
 
output2 - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestZeroRate2
 
output2_rate - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestZeroRate2
 
output2_tokenProductionRate - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestSplit
 
output2_tokenProductionRate - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestZeroRate2
 
output_log - Variable in class org.eol.WmsdActor
 
output_rate - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestZeroRate2
 
output_rate1 - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestZeroRate1
 
output_tokenInitProduction - Variable in class ptolemy.domains.sdf.lib.SDFTransformer
The rate parameter for the output port that declares the initial production.
output_tokenProductionRate - Variable in class ptolemy.actor.lib.Commutator
The parameter controlling the output port production rate.
output_tokenProductionRate - Variable in class ptolemy.actor.lib.Distributor
The parameter specifying the output port production rate.
output_tokenProductionRate - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestDelay
 
output_tokenProductionRate - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestJoin
 
output_tokenProductionRate - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestRamp
 
output_tokenProductionRate - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestZeroRate1
 
output_tokenProductionRate - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestZeroRate2
 
output_tokenProductionRate - Variable in class ptolemy.domains.sdf.lib.SDFTransformer
The rate parameter for the output port.
output_tokenProductionRate - Variable in class ptolemy.domains.sdf.lib.VariableLattice
The parameter that gives the number of tokens produces by the output port.
output_tokenProductionRate - Variable in class ptolemy.domains.sdf.lib.VariableRecursiveLattice
The number of tokens produced from the output port.
output_tokenProductionRate - Variable in class ptolemy.domains.sdf.lib.vq.HTVQEncode
The output rate.
output_tokenProductionRate - Variable in class ptolemy.domains.sdf.lib.vq.ImagePartition
The output rate.
output_tokenProductionRate - Variable in class ptolemy.domains.sdf.lib.vq.VQDecode
The output rate.
outputActions - Variable in class ptolemy.domains.modal.kernel.Transition
The action commands that produce outputs when the transition is taken.
OutputActionsAttribute - Class in ptolemy.domains.modal.kernel
An action that sends outputs to one or more ports.
OutputActionsAttribute(Workspace) - Constructor for class ptolemy.domains.modal.kernel.OutputActionsAttribute
Construct an action in the specified workspace with an empty string as a name.
OutputActionsAttribute(Transition, String) - Constructor for class ptolemy.domains.modal.kernel.OutputActionsAttribute
Construct an action with the given name contained by the specified transition.
outputAll - Variable in class org.sdm.spa.ArrayPermute
If true, output all permutations in an array.
outputArray - Variable in class ptolemy.actor.lib.hoc.ApplyFilterOverArray
The output port for output the filtered array.
outputArrayLength - Variable in class org.kepler.data.conversion.binary.EnsembleActor
 
outputArrayLength - Variable in class ptolemy.actor.lib.ArrayExtract
The total length of the output array.
outputASCII - Variable in class org.ecoinformatics.seek.garp.GarpPrediction
This is the file name to be used for the output ASCII grid file.
outputASCIIFileName - Variable in class org.ecoinformatics.seek.garp.GarpPrediction
This is the file name of the output ASCII grid file.
outputASCIIParameter - Variable in class org.ecoinformatics.seek.garp.GarpPrediction
This is the file name to be used for the output ASCII grid file.
outputBMP - Variable in class org.ecoinformatics.seek.garp.GarpPrediction
This is the file name to be used for the output BMP raster file.
outputBMPFileName - Variable in class org.ecoinformatics.seek.garp.GarpPrediction
This is the file name of the output BMP raster file.
outputBMPParameter - Variable in class org.ecoinformatics.seek.garp.GarpPrediction
This is the file name to be used for the output BMP raster file.
outputByRow - Variable in class org.kepler.spark.mllib.DatasetToJson
Option to output one JSON string (as an JSON object) per row
outputCacheID - Variable in class org.kepler.objectmanager.cache.DataCacheGetActor
 
outputCacheID - Variable in class org.kepler.objectmanager.cache.DataCachePutActor
 
outputCacheIDTokenProductionRate - Variable in class org.kepler.objectmanager.cache.DataCacheGetActor
 
outputCacheIDTokenProductionRate - Variable in class org.kepler.objectmanager.cache.DataCachePutActor
 
outputCachename - Variable in class org.ecoinformatics.seek.gis.gdal.GDALTranslateActor
 
outputCachename - Variable in class org.ecoinformatics.seek.gis.gdal.GDALWarpActor
 
outputCacheType - Variable in class org.ecoinformatics.seek.gis.gdal.GDALTranslateActor
 
outputCacheType - Variable in class org.ecoinformatics.seek.gis.gdal.GDALWarpActor
 
outputChannelNames() - Method in class org.kepler.data.datasource.dataturbine.DataTurbine
Output the channel names through the CHANNEL_NAMES_OUTPUT_PORT as an ArrayToken.
outputChannelPortParam - Variable in class org.kepler.data.datasource.dataturbine.DataTurbine
The name of the channel to output through the specifiedChannel output port
outputClient - Variable in class org.sdm.spa.SoaplabAnalysis
Modified SoaplabServiceClient after performing a Call with the client's jobID.
outputData(ChannelMap) - Method in class org.kepler.data.datasource.dataturbine.DataTurbine
Push the data out the output ports.
outputDataFile - Variable in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Parameter specifying the name of the file to store the data and event traces.
outputDataMatrix - Variable in class org.cipres.kepler.PhyloDataReader
The data matrix information contained in the input data is parsed and sent out through this output port.
outputEachFileSeparately - Variable in class org.srb.SProxy
Specify whether to display the complete Sls result at once or each file separately.
outputEachRowSeparately - Variable in class org.geon.DatabaseQuery
Specify whether to display the complete result at once or each row separately.
outputEachRowSeparately - Variable in class org.geon.TransitiveClosureDBQuery
Specify whether to display the complete result at once or each row separately.
outputEdgeCount(Node) - Method in class ptolemy.graph.DirectedGraph
Return the number of output edges of a specified node.
outputEdges(Node) - Method in class ptolemy.graph.DirectedGraph
Return the collection of output edges for a specified node.
outputFile - Variable in class org.cipres.kepler.GUIRunCIPRes
The standard output file's path and name are defined in this parameter.
outputFile - Variable in class org.cipres.kepler.JRunCIPRes
The standard output file's path and name are defined in this parameter.
outputFile - Variable in class org.geon.FileCopy
Output destination file URL.
outputFile - Variable in class org.sdm.spa.CommandLine
 
outputFile - Variable in class org.sdm.spa.CommandLineExec
Needs to be filled in if the user wants the command to output to a file.
outputFile - Variable in class org.srb.SRBProxyCommand
Filled in if the user wants the command to output to a file.
outputFileContent - Variable in class org.cipres.kepler.NexusFileReader
The Nexus file content is sent out through this output port.
outputFileDefaultName - Variable in class org.cipres.kepler.SubsetChooserActor
The file name parameter, which defines the default output file name.
outputFileName - Variable in class org.cipres.kepler.AlignmentEditor_Seaview
The output file name is sent out throught this port.
outputFileName - Variable in class org.cipres.kepler.SubsetChooserActor
The output file name is sent out through this port.
outputFilename - Variable in class org.ecoinformatics.seek.backprop.BackProp
 
outputFilename - Variable in class org.ecoinformatics.seek.gis.gdal.GDALTranslateActor
the filename (cacheid) of the outputfile
outputFilename - Variable in class org.ecoinformatics.seek.gis.gdal.GDALWarpActor
the filename (cacheid) of the outputfile
outputFilename - Variable in class org.ecoinformatics.seek.gis.java_gis.GridRescaler
This is the name to be given to the output file.
outputFileName - Variable in class org.srb.SRBProxyCommand
The output file name is set by previous processes.
outputFilenameTokenProductionRate - Variable in class org.ecoinformatics.seek.gis.gdal.GDALTranslateActor
production rate param to handle the multiport input
outputFilenameTokenProductionRate - Variable in class org.ecoinformatics.seek.gis.gdal.GDALWarpActor
production rate param to handle the multiport input
outputFileParameter - Variable in class org.camera.service.Fastq2Fasta
The output file's full path.
outputFilePath - Variable in class org.camera.service.Fastq2Fasta
Full path to output file.
outputFormat - Variable in class org.ecoinformatics.seek.gis.gdal.GDALTranslateActor
the format of the output...ascii, raw, binary, etc
outputFormat - Variable in class org.ecoinformatics.seek.gis.gdal.GDALWarpActor
The format of the output file taken from the list provided by gdalwarp --formats on the command line
outputFormat - Variable in class org.geon.Interpolate
The format of the interpolated result
outputFormat - Variable in class org.kepler.date.DateToString
The format of the string.
outputHTMLFile - Variable in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Parameter specifying the name of the generated HTML file.
outputLeafSet - Variable in class org.cipres.kepler.TreeParser
The tree's leaf set is sent to the outputLeafSet port.
outputLineByLine - Variable in class org.sdm.spa.CommandLine
 
outputLineByLine - Variable in class org.sdm.spa.CommandLineExec
If selected, broadcasts the output of the command line by line.
outputLineByLine - Variable in class org.srb.SRBProxyCommand
If selected, broadcasts the output of the command line by line.
outputMechanism - Variable in class org.sdm.spa.WSWithComplexTypes
Setting to composite creates XML assembler and disassembler actors for complex (nested) parameters.
outputName - Variable in class org.cipres.kepler.TreeParser
The detailed information of a tree is parsed and sent to different output ports.
outputName - Variable in class org.kepler.gis.actor.Crop
Name of output file.
outputName - Variable in class org.kepler.gis.actor.landscape.CreateLandscape
Path and name of landscape file to write.
outputNameSet() - Method in class ptolemy.domains.modal.kernel.ia.InterfaceAutomaton
Return the names of the output ports as a Set.
outputNewick - Variable in class org.cipres.kepler.TreeParser
The tree's newick expression is sent to the outputNewick port.
outputNil - Variable in class org.sdm.spa.WSWithComplexTypes
If true, then each output port whose name is not a child element of the incoming XML document outputs a nil token.
outputNil - Variable in class org.sdm.spa.XMLDisassembler
If true, then each output port whose name is not a child element of the incoming XML document outputs a nil token.
outputNils(TypedIOPort) - Method in class org.kepler.data.datasource.dataturbine.DataTurbine
Output nils for a given port.
outputParameterValue - Variable in class org.cipres.kepler.GUIRunCIPRes
The output parameter value, usually the name of the output file of the execution, is sent out throught this port.
outputParams - Variable in class org.ecoinformatics.seek.gis.gdal.GDALWarpActor
the -t_srs params from the cammand line.
outputPathParam - Variable in class org.geon.SVGConcat
An SVG output file name or URL.
outputPathPort - Variable in class org.geon.SVGConcat
An SVG output file URL port.
outputPort - Variable in class org.camera.service.CAMERARESTService
Output of REST service.
outputPort - Variable in class org.camera.service.CAMERAURLProcessor
 
outputPort - Variable in class org.camera.service.IdSizeMapForSeqFile
 
outputPort - Variable in class org.kepler.actor.rest.RESTService
Output of REST service.
outputPortList() - Method in interface ptolemy.actor.Actor
Return a list of the output ports of this actor.
outputPortList() - Method in class ptolemy.actor.AtomicActor
List the output ports.
outputPortList() - Method in class ptolemy.actor.CompositeActor
Return an enumeration of the output ports.
outputPortList() - Method in class ptolemy.domains.modal.kernel.FSMActor
Return a list of the output ports.
outputPortMessage - Variable in class org.camera.service.FastaValidation
Output message
outputPortMessage - Variable in class org.camera.service.Fastq2Fasta
Output message
outputPortStatus - Variable in class org.camera.service.FastaValidation
Output sequence
outputPortStatus - Variable in class org.camera.service.Fastq2Fasta
Output status, it is boolean.
outputRecOfArrays - Variable in class org.kepler.data.datasource.dataturbine.DataTurbine
 
outputRecordOfArrays - Variable in class org.kepler.data.datasource.dataturbine.DataTurbine
Format of output datapoint and timestamp pairs: Record of 2 Arrays, or an Array of X Records.
outputRuleSetFileName - Variable in class org.ecoinformatics.seek.gis.java_gis.GARPSummary
output ruleset file name
outputScore - Variable in class org.cipres.kepler.TreeParser
The tree score is sent to the outputScore port.
outputString - Variable in class org.cipres.kepler.TreeToString
The single tree string expression to represent a tree.
outputTaxaInfo - Variable in class org.cipres.kepler.PhyloDataReader
The taxa information contained in the input data is parsed and sent out through this output port.
outputTree - Variable in class org.cipres.kepler.MatrixAligner
The inferred tree is sent through this output port.
outputTree - Variable in class org.cipres.kepler.PhyloDataReader
The tree information contained in the input data is parsed and sent out through this output port.
outputTree - Variable in class org.cipres.kepler.RecIDCM3
The inferred tree is sent through this output port.
outputTree - Variable in class org.cipres.kepler.TreeImprover
The improved tree is sent through this output port.
outputTree - Variable in class org.cipres.kepler.TreeMerger
The merged whole tree is sent through this output port.
outputTrees - Variable in class org.cipres.kepler.TreeDecomposer
The decomposed trees are sent out through this output port.
outputTrigger - Variable in class org.cipres.kepler.Initializer
A trigger signal is sent out through this output port to other actors that need to use CIPRes CORBA registry.
outputType - Variable in class org.ecoinformatics.seek.gis.gdal.GDALTranslateActor
the type of output...byte, int, etc.
outputType - Variable in class org.geon.DatabaseQuery
The output format: XML, Record or String or a relational string with no metadata information.
outputType - Variable in class org.kepler.gis.actor.kml.KMLWriter
The output type: file, text, or binary.
outputType - Variable in class org.sdm.spa.ArrayPermute
The type of output: an array of records or an array of XML tokens.
outputType - Variable in class ptolemy.actor.lib.io.TokenReader
Deprecated.
If this parameter has a value, then the value specifies the type of the output port.
OUTPUTTYPE_ATTR - Static variable in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreDataSource
 
OutRemoteMachine - Variable in class org.sdm.spa.ProcessFileRT
 
outSVM - Variable in class org.kepler.spark.mllib.SVMKModel
SVMModel output.
outType - Variable in class org.kepler.gis.actor.calc.JiffleRasterCalculator
Raster output data type.
outUnits - Variable in class org.kepler.spark.mllib.ConvertColumns
outgoing units of value to convert
ovalBorder - Variable in class org.kepler.reporting.gui.DragAndDropPanel
 
OvalBorder - Class in org.kepler.reporting.gui
 
OvalBorder(boolean) - Constructor for class org.kepler.reporting.gui.OvalBorder
 
OvalBorder(Color, Color) - Constructor for class org.kepler.reporting.gui.OvalBorder
 
OvalBorder(int, int) - Constructor for class org.kepler.reporting.gui.OvalBorder
 
OvalBorder(int, int, Color, Color) - Constructor for class org.kepler.reporting.gui.OvalBorder
 
OVER_ICON_STR - Static variable in class org.kepler.cloudsharing.gui.CloudSharingConfigureAction
Icon when cursor over button.
OVER_ICON_STR - Static variable in class org.kepler.provenance.gui.ProvenanceConfigureAction
Icon when cursor over button.
OVER_ICON_STR - Static variable in class org.kepler.tagging.gui.TagAddAction
 
overflow - Variable in class ptolemy.actor.lib.conversions.DoubleToFix
The overflow strategy used, such as "saturate" or "modulo".
overflow - Variable in class ptolemy.actor.lib.conversions.FixToFix
The overflow strategy used to convert a double into a fix point, such as "saturate" or "to_zero".
Overflow - Class in ptolemy.math
The Overflow class provides a type safe enumeration of strategies for handling numeric overflows for FixPoint data types.
Overflow(String) - Constructor for class ptolemy.math.Overflow
Construct an Overflow object with the given String name.
Overflow.Grow - Class in ptolemy.math
The grow overflow strategy.
Overflow.Minimize - Class in ptolemy.math
The minimize overflow strategy.
Overflow.Modulo - Class in ptolemy.math
The modulo overflow strategy.
Overflow.Saturate - Class in ptolemy.math
The saturate overflows strategy.
Overflow.ToZero - Class in ptolemy.math
The overflow to zero strategy.
Overflow.Trap - Class in ptolemy.math
The trap overflows strategy.
OVERFLOW_TO_ZERO - Static variable in class ptolemy.math.Quantizer
Indicate that overflow should result in a zero value.
overrideModuleDependencies(String) - Method in class org.kepler.gui.kar.ExportArchiveAction
 
overrideParameter(String, String) - Method in class ptolemy.actor.DesignPatternGetMoMLAction
Add a parameter and expression to the map of parameters to override.
overrideProperty(ConfigurationProperty, ConfigurationProperty, boolean) - Method in class org.kepler.configuration.ConfigurationProperty
override originalProperty with newProperty.
OverviewPanel - Class in org.sdm.spa.actors.piw.viz
 
OverviewPanel(SequenceCollection, SiteCollection, ActionListener, ActionListener) - Constructor for class org.sdm.spa.actors.piw.viz.OverviewPanel
 
overwrite - Variable in class org.resurgence.actor.FileCopier
The boolean parameter, which decides if existing files are overwritten.
overwriteExistingModel - Variable in class org.kepler.spark.actor.SaveableModelActor
If true, overwrite the existing model.
overwriteOutput - Variable in class org.kepler.hadoop.director.HadoopEngine
If true, the output directory will be deleted first.
overwriteParameter - Variable in class org.srb.DataGridTransfer
Overwrite when file is copied
owner - Variable in class org.kepler.job.JobStatusInfo
 

P

p - Variable in class ptolemy.actor.lib.colt.ColtBinomial
p.
p - Variable in class ptolemy.actor.lib.colt.ColtLogarithmic
p.
p - Variable in class ptolemy.actor.lib.colt.ColtNegativeBinomial
The variance, or p.
p0 - Variable in class ptolemy.kernel.test.ExampleSystem
 
p1 - Variable in class ptolemy.kernel.test.ExampleSystem
 
p10 - Variable in class ptolemy.kernel.test.ExampleSystem
 
p11 - Variable in class ptolemy.kernel.test.ExampleSystem
 
p12 - Variable in class ptolemy.kernel.test.ExampleSystem
 
p13 - Variable in class ptolemy.kernel.test.ExampleSystem
 
p14 - Variable in class ptolemy.kernel.test.ExampleSystem
 
p2 - Variable in class ptolemy.kernel.test.ExampleSystem
 
p3 - Variable in class ptolemy.kernel.test.ExampleSystem
 
p4 - Variable in class ptolemy.kernel.test.ExampleSystem
 
p5 - Variable in class ptolemy.kernel.test.ExampleSystem
 
p6 - Variable in class ptolemy.kernel.test.ExampleSystem
 
p7 - Variable in class ptolemy.kernel.test.ExampleSystem
 
p8 - Variable in class ptolemy.kernel.test.ExampleSystem
 
p9 - Variable in class ptolemy.kernel.test.ExampleSystem
 
pack(Top, boolean) - Method in class org.kepler.gui.KeplerMenuHandler
pack the gui for Top t. alreadyCalled is true if pack has already been called at least once.
pack() - Method in class org.kepler.objectmanager.data.db.QBEditor
 
pack() - Method in class ptolemy.actor.gui.TableauFrame
Optionally invoke an alternative pack() method.
pack(Top, boolean) - Method in interface ptolemy.actor.gui.TopPack
Pack the Top JFrame.
pack() - Method in class ptolemy.actor.gui.WelcomeWindow
Make this window displayable.
pack() - Method in class ptolemy.gui.Top
Size this window to its preferred size and make it displayable, and override the base class to populate the menu bar if the menus have not already been populated.
PackageBasedModelElementClassProvider - Class in org.ptolemy.classloading.osgi
A package-based provider that gets a list of classes to be provided in its constructor.
PackageBasedModelElementClassProvider(ClassLoader, String...) - Constructor for class org.ptolemy.classloading.osgi.PackageBasedModelElementClassProvider
Create a package-based model element class provider.
PACKAGEID - Static variable in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200Parser
 
paddingOn - Variable in class org.kepler.data.datasource.dataturbine.DataTurbine
 
padGaps(long, int, Vector<Object>) - Method in class org.kepler.data.datasource.dataturbine.DataTurbine
 
padMiddle(Complex[], int) - Static method in class ptolemy.math.ComplexArrayMath
Return a new array of Complex numbers that is formed by padding the middle of the array with 0's.
padMiddle(double[], int) - Static method in class ptolemy.math.DoubleArrayMath
Return a new array of doubles that is formed by padding the middle of the array with 0's.
padMiddle(float[], int) - Static method in class ptolemy.math.FloatArrayMath
Return a new array of floats that is formed by padding the middle of the array with 0's.
padMiddle(int[], int) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array of ints that is formed by padding the middle of the array with 0's.
padMiddle(long[], int) - Static method in class ptolemy.math.LongArrayMath
Return a new array of longs that is formed by padding the middle of the array with 0's.
paint(Graphics) - Method in class com.jgoodies.forms.debug.FormDebugPanel
Paints the panel.
paint(Graphics) - Method in class org.ecoinformatics.seek.querybuilder.DBTableJoin
Implements a paint method for painting all joins
paint(Graphics) - Method in class org.kepler.reporting.rio.gui.ImageComponent
 
paint(Graphics, JComponent) - Method in class org.kepler.workflowrunmanager.gui.GroupableTableHeaderUI
Paint a representation of the table header.
paint(Graphics) - Method in class org.mlc.swing.layout.FormDebugPanel
Paints the panel.
paint(Graphics) - Method in class ptolemy.media.Picture
Paint this component.
paint(Graphics2D) - Method in class ptolemy.vergil.kernel.RelativeLinkFigure
Paint the figure.
paint(Graphics2D) - Method in class ptolemy.vergil.kernel.ShadowHighlighter
Paint the figure.
paint(Graphics2D) - Method in class ptolemy.vergil.unit.BasicEdgeHighlighter
Paint the edge.
paintBorder(Component, Graphics, int, int, int, int) - Method in class com.jgoodies.forms.factories.Borders.EmptyBorder
Paints the border for the specified component with the specified position and size.
paintBorder(Component, Graphics, int, int, int, int) - Method in class org.kepler.reporting.gui.OvalBorder
 
paintChildren(Graphics) - Method in class org.ecoinformatics.seek.querybuilder.DBTableDesktopPane
Overrides paintChildren to make sure all the "joins" get painted
paintComponent(Graphics) - Method in class com.jgoodies.forms.debug.FormDebugPanel
Paints the component and - if background painting is enabled - the grid.
paintComponent(Graphics) - Method in class org.kepler.provenance.gui.DisabledGlassPane
 
paintComponent(Graphics) - Method in class org.kepler.reporting.gui.DragAndDropPanel
 
paintComponent(Graphics) - Method in class org.kepler.reporting.gui.ImagePanel
 
paintComponent(Graphics) - Method in class org.mlc.swing.layout.FormDebugPanel
Paints the component and - if background painting is enabled - the grid
paintComponent(Graphics) - Method in class ptolemy.plot.PlotBox
Paint the component contents, which in this base class is only the axes.
paintedGroups - Variable in class org.kepler.workflowrunmanager.gui.GroupableTableHeaderUI
Contains a list of ColumnGroups that have already been painted in the current paint request.
paintedList() - Method in class ptolemy.vergil.icon.XMLIcon
Return the painted list contained by this icon.
PairFlatMapFunctionBase<T,K,V> - Class in org.kepler.spark.stub
A base class for PairFlatMapFunctions used in Kepler.
PairFlatMapFunctionBase() - Constructor for class org.kepler.spark.stub.PairFlatMapFunctionBase
 
PaletteList - Class in ptolemy.actor.gui.run
A customized version of the DndList class by Michael Connor (mlconnor@yahoo.com).
PaletteList(PtolemyFormEditor, ListModel) - Constructor for class ptolemy.actor.gui.run.PaletteList
Construct a PaletteList.
pane - Variable in class ptolemy.actor.gui.HTMLViewer
The text pane.
Panel - Class in ptolemy.actor.gui.properties
A GUI property that encloses a JPanel component.
Panel(NamedObj, String) - Constructor for class ptolemy.actor.gui.properties.Panel
Construct a GUI property with the given name contained by the specified entity.
Panel(NamedObj, String, JComponent) - Constructor for class ptolemy.actor.gui.properties.Panel
Construct a GUI property with the given name contained by the specified entity with the given Java Swing component.
Panel(NamedObj, String, JComponent, Object) - Constructor for class ptolemy.actor.gui.properties.Panel
Construct a GUI property with the given name contained by the specified entity with the given Java Swing component and the given layout constraint.
Panel(NamedObj, String, Object) - Constructor for class ptolemy.actor.gui.properties.Panel
Construct a GUI property with the given name contained by the specified entity with the given layout constraint.
PANEL_INSETS - Static variable in class org.kepler.reporting.gui.ReportViewerTOC
 
PanelBuilder - Class in com.jgoodies.forms.builder
An general purpose panel builder that uses the FormLayout to lay out JPanels.
PanelBuilder(FormLayout) - Constructor for class com.jgoodies.forms.builder.PanelBuilder
Constructs an instance of PanelBuilder for the given layout.
PanelBuilder(FormLayout, JPanel) - Constructor for class com.jgoodies.forms.builder.PanelBuilder
Constructs an instance of PanelBuilder for the given FormLayout and layout container.
PanelBuilder(JPanel, FormLayout) - Constructor for class com.jgoodies.forms.builder.PanelBuilder
PARAGRAPH_GAP_ROWSPEC - Static variable in class com.jgoodies.forms.factories.FormFactory
Describes the logical vertical default gap between two paragraphs in the layout grid.
param - Variable in class ptolemy.data.expr.test.AttributeChanged
The parameter to test.
PARAMDELIMITER - Static variable in class org.camera.service.ServiceUtils
 
PARAMDELIMITER - Static variable in class org.kepler.actor.rest.ServiceUtils
 
PARAMETER - Static variable in class org.kepler.sms.gui.PortSemanticTypeEditorPane
 
Parameter - Class in ptolemy.data.expr
Parameter extends Variable with additional support for string-valued variables that makes these friendlier at the user interface level.
Parameter() - Constructor for class ptolemy.data.expr.Parameter
Construct a parameter in the default workspace with an empty string as its name.
Parameter(Workspace) - Constructor for class ptolemy.data.expr.Parameter
Construct a parameter in the specified workspace with an empty string as a name.
Parameter(NamedObj, String) - Constructor for class ptolemy.data.expr.Parameter
Construct a parameter with the given name contained by the specified entity.
Parameter(NamedObj, String, Token) - Constructor for class ptolemy.data.expr.Parameter
Construct a Parameter with the given container, name, and Token.
parameter_K - Variable in class ptolemy.domains.pn.demo.QR.ND_1
 
parameter_K - Variable in class ptolemy.domains.pn.demo.QR.ND_2
 
parameter_K - Variable in class ptolemy.domains.pn.demo.QR.ND_3
 
parameter_K - Variable in class ptolemy.domains.pn.demo.QR.ND_4
 
parameter_K - Variable in class ptolemy.domains.pn.demo.QR.ND_5
 
parameter_N - Variable in class ptolemy.domains.pn.demo.QR.ND_1
 
parameter_N - Variable in class ptolemy.domains.pn.demo.QR.ND_2
 
parameter_N - Variable in class ptolemy.domains.pn.demo.QR.ND_3
 
parameter_N - Variable in class ptolemy.domains.pn.demo.QR.ND_4
 
parameter_N - Variable in class ptolemy.domains.pn.demo.QR.ND_5
 
ParameterDisplayIconScript - Class in ptolemy.vergil.basic.export.web
A parameter specifying default JavaScript actions to associate with icons in model.
ParameterDisplayIconScript(NamedObj, String) - Constructor for class ptolemy.vergil.basic.export.web.ParameterDisplayIconScript
Create an instance of this parameter.
ParameterEditorStyle - Class in ptolemy.actor.gui.style
This attribute annotates user settable attributes to specify the style used for configuring the containing attribute.
ParameterEditorStyle() - Constructor for class ptolemy.actor.gui.style.ParameterEditorStyle
Construct an attribute in the default workspace with an empty string as its name.
ParameterEditorStyle(Workspace) - Constructor for class ptolemy.actor.gui.style.ParameterEditorStyle
Construct an attribute in the given workspace with an empty string as its name.
ParameterEditorStyle(NamedObj, String) - Constructor for class ptolemy.actor.gui.style.ParameterEditorStyle
Construct an attribute with the specified container and name.
parameterForOutput - Variable in class org.cipres.kepler.GUIRunCIPRes
The GUIRun parameter to be send out is defined in this parameter.
ParameterizedNodeController - Class in ptolemy.vergil.basic
This class provides interaction with nodes that represent Ptolemy II components with parameters.
ParameterizedNodeController(GraphController) - Constructor for class ptolemy.vergil.basic.ParameterizedNodeController
Create an attribute controller associated with the specified graph controller.
ParameterMirrorPort - Class in ptolemy.actor.parameters
This port mirrors properties of associated parameter ports.
ParameterMirrorPort(ComponentEntity, String) - Constructor for class ptolemy.actor.parameters.ParameterMirrorPort
Construct a new input port in the specified container with the specified name.
parameterName - Variable in class ptolemy.vergil.toolbox.ArrayOfRecordsConfigureFactory
The name of the attribute that is to be displayed.
ParameterNameChanges - Class in ptolemy.moml.filter
When this class is registered with the MoMLParser.setMoMLFilter() method, it will cause MoMLParser to filter so that models from earlier releases will run in the current release.
ParameterNameChanges() - Constructor for class ptolemy.moml.filter.ParameterNameChanges
 
ParameterPort - Class in ptolemy.actor.parameters
A specialized port for use with PortParameter.
ParameterPort(ComponentEntity, String) - Constructor for class ptolemy.actor.parameters.ParameterPort
Construct a new input port in the specified container with the specified name.
ParameterPort(ComponentEntity, String, PortParameter) - Constructor for class ptolemy.actor.parameters.ParameterPort
Construct a new input port in the specified container with the specified name.
Parameters - Class in ptolemy.vergil.basic.layout.kieler
Responsible for translating layout configuration parameters into the KIELER format.
Parameters(CompositeEntity) - Constructor for class ptolemy.vergil.basic.layout.kieler.Parameters
Create a parameters instance.
ParametersAttribute - Class in org.kepler.webview.actor
TODO: this class necessary?
ParametersAttribute(NamedObj, String) - Constructor for class org.kepler.webview.actor.ParametersAttribute
 
parametersChanged() - Method in class ptolemy.vergil.basic.export.web.WebExportParameters
Return true if the parameter values are different from the defaults.
ParameterSet - Class in ptolemy.actor.parameters
An attribute that reads multiple values from a file and sets corresponding parameters in the container.
ParameterSet(NamedObj, String) - Constructor for class ptolemy.actor.parameters.ParameterSet
Construct an attribute with the given name contained by the specified entity.
ParameterSetter - Class in org.kepler.actor.io
This actor will replicate a token for each time fire() is called. this is useful if the director is iterating and you want the same token to be sent over a port for each iteration.
ParameterSetter() - Constructor for class org.kepler.actor.io.ParameterSetter
const.
ParameterSetter(CompositeEntity, String) - Constructor for class org.kepler.actor.io.ParameterSetter
const.
ParameterSetter(Workspace) - Constructor for class org.kepler.actor.io.ParameterSetter
const
parametersForRunTclFile() - Method in class ptolemy.util.test.junit.TclTests
Return a two dimensional array of arrays of strings that name the .tcl files to be executed.
parameterTypes - Variable in class ptolemy.actor.lib.TypeTest
A record of record of strings representing the types of parameters of actors in the model.
paramF - Variable in class org.camera.service.CAMERARESTService
URL of the csdl file
paramGridCert - Variable in class org.kepler.actor.ssh.SshSession
The file path for the Grid Certificate file if the user wants to connect to an GSI-SSH server without having to enter the password all the time (the passphrase for the certificate will be asked once).
paramGridProxy - Variable in class org.kepler.actor.ssh.SshSession
The file path for the Grid Certificate Proxy file if the user wants to connect to an GSI-SSH server without having to enter the password all the time.
paramIdentity - Variable in class org.kepler.actor.ssh.SshSession
The file path for the ssh identity file if the user wants to connect without having to enter the password all the time.
paramIdentity - Variable in class org.sdm.spa.Ssh2Exec
The file path for userName's ssh identity file if the user wants to connect without having to enter the password all the time.
paramInputPort - Variable in class org.kepler.actor.rest.RESTService
Input parameters to REST service.
paramsOutput - Variable in class org.ROADnet.OrbLogger
 
parent - Variable in class org.kepler.actor.ssh.DirectoryCreator
Specifying whether parent directories should be created recursively if necessary.
parent - Variable in class org.kepler.gui.TreeAction
 
parent - Variable in class org.kepler.workflowscheduler.gui.SchedulerAbstractAction
 
parent - Variable in class ptolemy.data.expr.SimpleNode
 
parentDir - Variable in class org.kepler.actor.RandomDirectoryMaker
The parameter, which is a string with the directory name.
parentFrame - Variable in class org.ecoinformatics.seek.ecogrid.EcogridPreferencesTab
 
PARENTLOADER - Static variable in class org.kepler.scriptengine.java.JavaScriptEngine
 
ParhiMaximumProfitToCostRatioStrategy - Class in ptolemy.graph.analysis.strategy
Maximum profit to cost ratio analyzer which uses Parhi's algorithm for iteration bound.
ParhiMaximumProfitToCostRatioStrategy(Graph, ToDoubleMapping, ToIntMapping) - Constructor for class ptolemy.graph.analysis.strategy.ParhiMaximumProfitToCostRatioStrategy
Construct an instance of this class.
parse(InputSource) - Method in class com.microstar.xml.driver.SAXDriver
Parse a document.
parse(String) - Method in class com.microstar.xml.driver.SAXDriver
Parse an XML document from a system identifier (URI).
parse(String, String, String) - Method in class com.microstar.xml.XmlParser
Parse an XML document from a URI.
parse(String, String, InputStream, String) - Method in class com.microstar.xml.XmlParser
Parse an XML document from a byte stream.
parse(String, String, Reader) - Method in class com.microstar.xml.XmlParser
Parse an XML document from a character stream.
parse(InputSource) - Method in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200Parser
parses the EML package using an InputSource
parse(InputStream) - Method in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200Parser
parses the EML package using an InputStream
parse(InputSource) - Method in interface org.kepler.metadata.ParserInterface
parses the EML package using an InputSource
parse(Node) - Static method in class org.kepler.reporting.rio.fop.ReportParser
 
parse(InputSource) - Method in class org.kepler.reporting.rio.fop.ReportXMLReader
 
parse(ReportLayout) - Method in class org.kepler.reporting.rio.fop.ReportXMLReader
Starts parsing the Report object.
parse(String) - Method in class org.kepler.reporting.rio.fop.tools.AbstractObjectReader
 
parse(InputSource) - Method in class org.kepler.reporting.rio.fop.tools.AbstractObjectReader
 
parse(String) - Static method in class org.ptolemy.commons.VersionSpecification
Parses the given version String, using '.' , '-' , '_' as potential delimiters.
parse - Variable in class ptolemy.actor.gui.properties.ActionGUIProperty
A Boolean parameter that determines whether the moml text should be parsed before applying to the current model in the ActionGUIProperty.perform() method.
parse(String) - Static method in class ptolemy.configs.test.ValidatingXMLParser
Parse an XML parser using a validating parser.
parse(URL, URL) - Method in class ptolemy.moml.MoMLParser
Parse the MoML file at the given URL, which may be a file on the local file system, using the specified base to expand any relative references within the MoML file.
parse(URL, InputStream) - Method in class ptolemy.moml.MoMLParser
Deprecated.
Use MoMLParser.parse(URL base, String systemID, InputStream input) for better error messages that include the name of the file being read.
parse(URL, String, InputStream) - Method in class ptolemy.moml.MoMLParser
Parse the given stream, using the specified url as the base to expand any external references within the MoML file.
parse(URL, Reader) - Method in class ptolemy.moml.MoMLParser
Deprecated.
Use MoMLParser.parse(URL base, String systemID, Reader reader) for better error messages that include the name of the file being read.
parse(URL, String, Reader) - Method in class ptolemy.moml.MoMLParser
Parse the given stream, using the specified url as the base The reader is wrapped in a BufferedReader before being used.
parse(String) - Method in class ptolemy.moml.MoMLParser
Parse the given string, which contains MoML.
parse(URL, String) - Method in class ptolemy.moml.MoMLParser
Parse the given string, which contains MoML, using the specified base to evaluate relative references.
parse(URL, InputStream) - Method in class ptolemy.plot.plotml.PlotBoxMLParser
Parse the given stream as a PlotML file.
parse(URL, Reader) - Method in class ptolemy.plot.plotml.PlotBoxMLParser
Parse the given stream as a PlotML file.
parse(URL, String) - Method in class ptolemy.plot.plotml.PlotBoxMLParser
Parse the given text as PlotML.
parse(String) - Static method in class ptolemy.util.XSLTUtilities
Parse an XML document using Saxon.
parse(URL, InputStream) - Method in class ptolemy.vergil.actor.DocManager
Parse the given stream as a DocML file.
parse(URL, Reader) - Method in class ptolemy.vergil.actor.DocManager
Parse the given stream as a DocML file.
parse(String) - Method in class ptolemy.vergil.actor.DocManager
Parse the given text as DocML.
parseActor(File) - Static method in class org.kepler.loader.util.ParseWorkflow
Parse an actor's XML definition.
parseArg(String) - Method in class org.kepler.KeplerConfigurationApplication
Parse a command-line argument.
parseArgs(String[]) - Static method in class org.kepler.Kepler
Parse the command line arguments and run the appropriate application.
parseArgs(String[]) - Method in class org.kepler.KeplerConfigurationApplication
Parse the command-line arguments.
parseArgs(String[]) - Method in class ptolemy.plot.compat.PxgraphParser
Parse pxgraph style command-line arguments.
parseArgs(String[], URL) - Method in class ptolemy.plot.compat.PxgraphParser
Parse pxgraph style command-line arguments, using the specified base URL for any relative URL references.
parseDeleteOutput(String, int, String, String) - Method in class org.kepler.job.JobSupportCondor
Parse output of delete command. return: true or false indicating that the command was successful or not
parseDeleteOutput(String, int, String, String) - Method in class org.kepler.job.JobSupportFork
Parse output of delete command. return: true if stdout is empty and exitCode is 0, otherwise return false
parseDeleteOutput(String, int, String, String) - Method in class org.kepler.job.JobSupportLoadLeveler
Parse output of delete command. return: true or false indicating that the command was successful or not
parseDeleteOutput(String, int, String, String) - Method in class org.kepler.job.JobSupportLSF
Parse output of delete command. return: true if stdout is empty and exitCode is 0, otherwise return false
parseDeleteOutput(String, int, String, String) - Method in class org.kepler.job.JobSupportMoab
Parse output of delete command.
parseDeleteOutput(String, int, String, String) - Method in class org.kepler.job.JobSupportNCCS
Parse output of delete command. return: true or false indicating that the command was successful or not
parseDeleteOutput(String, int, String, String) - Method in class org.kepler.job.JobSupportPBS
Parse output of delete command. return: true or false indicating that the command was successful or not
parseDeleteOutput(String, int, String, String) - Method in class org.kepler.job.JobSupportSGE
Parse output of delete command. return: true if stdout is empty and exitCode is 0, otherwise return false
parseDeleteOutput(String, int, String, String) - Method in class org.kepler.job.JobSupportSLURM
Parse output of delete command. return: true or false indicating that the command was successful or not
parseDependencyString(String) - Static method in class org.kepler.kar.ModuleDependencyUtil
Return a Vector that contains the module dependencies found in the given formatted String list (of the type created by generateDependencyString(Vector).
parsedExecIds - Variable in class org.kepler.workflowrunmanager.ExecIdQueryParse
 
parseEquations(String) - Method in class ptolemy.moml.unit.UParser
Parse a set of equations separated by semicolons.
ParseException - Exception in ptolemy.data.expr
This exception is thrown when parse errors are encountered.
ParseException(Token, int[][], String[]) - Constructor for exception ptolemy.data.expr.ParseException
This constructor is used by the method "generateParseException" in the generated parser.
ParseException() - Constructor for exception ptolemy.data.expr.ParseException
The following constructors are for use by you for whatever purpose you can think of.
ParseException(String) - Constructor for exception ptolemy.data.expr.ParseException
Constructor with message.
ParseException - Exception in ptolemy.moml.unit
This exception is thrown when parse errors are encountered.
ParseException(Token, int[][], String[]) - Constructor for exception ptolemy.moml.unit.ParseException
This constructor is used by the method "generateParseException" in the generated parser.
ParseException() - Constructor for exception ptolemy.moml.unit.ParseException
The following constructors are for use by you for whatever purpose you can think of.
ParseException(String) - Constructor for exception ptolemy.moml.unit.ParseException
Constructor with message.
parseFile(String) - Method in class ptolemy.moml.MoMLParser
Parse the file with the given name, which contains MoML.
parseFile(String, URL) - Method in class ptolemy.plot.Plot
Deprecated. 
parseFile(String) - Method in class ptolemy.plot.PlotBox
Deprecated.
Use read() to read the old file format, or use one of the classes in the plotml package to read the XML-based file format.
parseFile(String, URL) - Method in class ptolemy.plot.PlotBox
Deprecated.
Use read() instead.
parseFile(String) - Method in interface ptolemy.plot.PlotBoxInterface
Deprecated.
Use read() to read the old file format, or use one of the classes in the plotml package to read the XML-based file format.
parseFile(String, URL) - Method in interface ptolemy.plot.PlotBoxInterface
Deprecated.
Use read() instead.
parseFile(String, URL) - Method in interface ptolemy.plot.PlotInterface
Deprecated. 
parseInteger(String) - Static method in class ptolemy.math.Precision.PrecisionFormat
Parse a String as an integer.
parseJSON(String) - Static method in class ptolemy.actor.lib.conversions.json.JSONToToken
Parse the input string and return a token representation of the data.
parseKAR(File, boolean) - Static method in class org.kepler.loader.util.ParseWorkflow
Parse a workflow KAR file.
parseKarXml(String, String, int, boolean) - Static method in class org.kepler.objectmanager.repository.EcogridRepositoryResults
 
parseLabel(OWLAnnotationAxiom) - Static method in class org.kepler.sms.NamedOntModel
 
parseLabel(OWLAnnotation) - Static method in class org.kepler.sms.NamedOntModel
 
parseLsidDependencies(Attributes) - Static method in class org.kepler.kar.KAREntry
 
parseMoML(String) - Static method in class org.kepler.ExecutionEngine
static method to parse a moml document and return a NamedObj
parseMoML(String, Workspace) - Static method in class org.kepler.ExecutionEngine
static method to parse a moml document and return a NamedObj
parseMoML(String) - Static method in class org.kepler.loader.util.ParseWorkflow
Parse a MoML string.
parseMoML(String) - Static method in class ptolemy.data.expr.MoMLUtilities
Parse the string provided and return the result wrapped in a token.
parseMoML(String) - Static method in class ptolemy.data.expr.UtilityFunctions
Parse the string provided and return the result wrapped in a token.
parseMoMLFile(String) - Method in class org.kepler.objectmanager.ActorMetadata
try to locate and parse a moml file as a class
parseNumSequence - Variable in class org.camera.service.FastaValidation
The Number of sequence to be parsed, if no positive integer is provided then all the sequences in file will be parsed.
parseOutputFromStartingServer(InputStream) - Static method in class org.kepler.spark.actor.SparkConnection
Parse the output from starting the server using start-myspark.sh
parseOWLSerializedString(String) - Static method in class org.kepler.sms.Util
 
parseParameterFile(String) - Static method in class org.kepler.util.ParseWorkflowUtil
Read a file containing name value pairs of parameters.
parsePxgraphargs(String, URL) - Method in class ptolemy.plot.compat.PxgraphParser
Split a string containing pxgraph-compatible command-line arguments into an array and call parseArgs() on the array.
parseQueryDef(DSSchemaIFace, String, Hashtable) - Static method in class org.ecoinformatics.seek.querybuilder.DBQueryDefParserEmitter
Parses and creates a DBQueryDef object from an XML String
parseQueryDef(DSSchemaIFace, String) - Static method in class org.ecoinformatics.seek.querybuilder.DBQueryDefParserEmitter
Parses and creates a DBQueryDef object from an XML String
parser - Variable in class com.microstar.xml.demo.XmlApp
 
parser - Variable in class com.microstar.xml.demo.XmlApplet
 
parser - Variable in class ptolemy.data.expr.SimpleNode
 
parser(String) - Method in class ptolemy.data.expr.XMLParser
Generate the document tree for the specified XML string.
parser(InputStream) - Method in class ptolemy.data.expr.XMLParser
Generate the document tree for the specified input stream.
parser - Static variable in class ptolemy.moml.test.MoMLParserLeak
Note that the parser is what actually leaks here.
parser - Variable in class ptolemy.moml.test.UnloadModelTest
The MoMLParser that is created and then destroyed.
ParserAttribute - Class in ptolemy.moml
This attribute represents a MoML parser.
ParserAttribute(NamedObj, String) - Constructor for class ptolemy.moml.ParserAttribute
Construct an attribute with the specified container and name.
parseRemainingArgs(String[], int) - Method in class org.kepler.CommandLineArgument
Parse one or more of the remaining command line arguments.
ParserInterface - Interface in org.kepler.metadata
A metadata parser will be used in the MetadataPaser actor.
PARSERNAME - Static variable in class org.kepler.workflowscheduler.gui.SearchScheduleSwingWorker
 
ParserScope - Interface in ptolemy.data.expr
An interface used by the expression parser for identifier lookup.
parseSchemaDef(String) - Static method in class org.ecoinformatics.seek.querybuilder.DBSchemaParserEmitter
Parses an XML String representing a Schema Def and returns a DSSchemaIFace object
parseSignString(String) - Static method in class ptolemy.math.Precision.PrecisionFormat
Parse the 'U' or 'S' sign specifier.
parseStatusOutput(String, int, String, String) - Method in class org.kepler.job.JobSupportCondor
Parse output of status check command and get status info. return: a JobStatusInfo object, or throws an JobException with the error output
parseStatusOutput(String, int, String, String) - Method in class org.kepler.job.JobSupportFork
Parse output of status check command and get status info return: a JobStatusInfo object, or throws an JobException with the error output
parseStatusOutput(String, int, String, String) - Method in class org.kepler.job.JobSupportLoadLeveler
Parse output of status check command and get status info return: a JobStatusInfo object, or throws an JobException with the error output
parseStatusOutput(String, int, String, String) - Method in class org.kepler.job.JobSupportLSF
Parse output of status check command and get status info return: a JobStatusInfo object, or throws an JobException with the error output
parseStatusOutput(String, int, String, String) - Method in class org.kepler.job.JobSupportMoab
Parse output of status check command and get status info
parseStatusOutput(String, int, String, String) - Method in class org.kepler.job.JobSupportNCCS
Parse output of status check command and get status info return: a JobStatusInfo object, or throws an JobException with the error output
parseStatusOutput(String, int, String, String) - Method in class org.kepler.job.JobSupportPBS
Parse output of status check command and get status info return: a JobStatusInfo object, or throws an JobException with the error output
parseStatusOutput(String, int, String, String) - Method in class org.kepler.job.JobSupportSGE
Parse output of status check command and get status info return: a JobStatusInfo object, or throws an JobException with the error output
parseStatusOutput(String, int, String, String) - Method in class org.kepler.job.JobSupportSLURM
Parse output of status check command and get status info return: a JobStatusInfo object, or throws an JobException with the error output
parseString(String) - Method in class ptolemy.math.Precision.IntegerFractionPrecisionFormat
 
parseString(String) - Method in class ptolemy.math.Precision.LengthExponentPrecisionFormat
 
parseString(String) - Method in class ptolemy.math.Precision.LengthIntegerPrecisionFormat
 
parseString(String) - Method in class ptolemy.math.Precision.PrecisionFormat
Parse the given String argument using the rules of the specific PrecisionFormat that is defined.
parseString(String) - Method in class ptolemy.math.Precision.VHDLPrecisionFormat
 
parseSubmitOutput(String, String) - Method in class org.kepler.job.JobSupportCondor
Parse output of submission and get information: jobID. return String jobID on success throws JobException at failure (will contain the error stream or output stream)
parseSubmitOutput(String, String) - Method in class org.kepler.job.JobSupportFork
Parse output of submission and get information: jobID return String jobID on success throws JobException at failure (will contain the error stream or output stream)
parseSubmitOutput(String, String) - Method in class org.kepler.job.JobSupportLoadLeveler
Parse output of submission and get information: jobID return String jobID on success throws JobException at failure (will contain the error stream or output stream)
parseSubmitOutput(String, String) - Method in class org.kepler.job.JobSupportLSF
Parse output of submission and get information: jobID return String jobID on success throws JobException at failure (will contain the error stream or output stream)
parseSubmitOutput(String, String) - Method in class org.kepler.job.JobSupportMoab
Parse output of submission and get information: jobID return String jobID on success throws JobException at failure (will contain the error stream or output stream)
parseSubmitOutput(String, String) - Method in class org.kepler.job.JobSupportNCCS
Parse output of submission and get information: jobID return String jobID on success throws JobException at failure (will contain the error stream or output stream)
parseSubmitOutput(String, String) - Method in class org.kepler.job.JobSupportPBS
Parse output of submission and get information: jobID return String jobID on success throws JobException at failure (will contain the error stream or output stream)
parseSubmitOutput(String, String) - Method in class org.kepler.job.JobSupportSGE
Parse output of submission and get information: jobID return String jobID on success throws JobException at failure (will contain the error stream or output stream)
parseSubmitOutput(String, String) - Method in class org.kepler.job.JobSupportSLURM
Parse output of submission and get information: jobID return String jobID on success throws JobException at failure (will contain the error stream or output stream)
parseTaskStatusOutput(String, int, int, String, String) - Method in class org.kepler.job.JobSupportCondor
 
parseTaskStatusOutput(String, int, int, String, String) - Method in class org.kepler.job.JobSupportFork
 
parseTaskStatusOutput(String, int, int, String, String) - Method in class org.kepler.job.JobSupportLoadLeveler
 
parseTaskStatusOutput(String, int, int, String, String) - Method in class org.kepler.job.JobSupportLSF
 
parseTaskStatusOutput(String, int, int, String, String) - Method in class org.kepler.job.JobSupportMoab
Parse output of task status check command and get status info
parseTaskStatusOutput(String, int, int, String, String) - Method in class org.kepler.job.JobSupportNCCS
 
parseTaskStatusOutput(String, int, int, String, String) - Method in class org.kepler.job.JobSupportPBS
 
parseTaskStatusOutput(String, int, int, String, String) - Method in class org.kepler.job.JobSupportSGE
 
parseTaskStatusOutput(String, int, int, String, String) - Method in class org.kepler.job.JobSupportSLURM
 
ParseTreeDumper - Class in ptolemy.data.expr
This class implements a visitor that writes parse trees in a debug format.
ParseTreeDumper() - Constructor for class ptolemy.data.expr.ParseTreeDumper
 
ParseTreeEvaluator - Class in ptolemy.data.expr
This class evaluates a parse tree given a reference to its root node.
ParseTreeEvaluator() - Constructor for class ptolemy.data.expr.ParseTreeEvaluator
 
ParseTreeEvaluatorForGuardExpression - Class in ptolemy.domains.modal.kernel
This class extends the ParseTreeEvaluator class.
ParseTreeEvaluatorForGuardExpression(RelationList, double) - Constructor for class ptolemy.domains.modal.kernel.ParseTreeEvaluatorForGuardExpression
Construct a parse tree evaluator for a guard expression of the given relation list and the error tolerance for evaluation the relations.
ParseTreeFreeVariableCollector - Class in ptolemy.data.expr
This class visits parse trees and collects the set of free variables in the expression.
ParseTreeFreeVariableCollector() - Constructor for class ptolemy.data.expr.ParseTreeFreeVariableCollector
 
ParseTreeFreeVariableRenamer - Class in ptolemy.data.expr
This class visits parse trees and renames the free variables that match a specified variable.
ParseTreeFreeVariableRenamer() - Constructor for class ptolemy.data.expr.ParseTreeFreeVariableRenamer
 
ParseTreeSpecializer - Class in ptolemy.data.expr
This class reduces a parse tree, given a scope of bound variables.
ParseTreeSpecializer() - Constructor for class ptolemy.data.expr.ParseTreeSpecializer
 
parseTreeToExpression(ASTPtRootNode) - Method in class ptolemy.data.expr.ParseTreeWriter
Produce an expression for this parse tree.
ParseTreeTypeInference - Class in ptolemy.data.expr
This class visits parse trees and infers a type for each node in the parse tree.
ParseTreeTypeInference() - Constructor for class ptolemy.data.expr.ParseTreeTypeInference
 
ParseTreeVisitor - Interface in ptolemy.data.expr
This class implements the visitor pattern for parse trees in the expression language.
ParseTreeWriter - Class in ptolemy.data.expr
This class implements a visitor that writes parse trees in the expression language.
ParseTreeWriter() - Constructor for class ptolemy.data.expr.ParseTreeWriter
 
parseUnitExpr(String) - Method in class ptolemy.moml.unit.UParser
Parse a unit expression.
ParseWorkflow - Class in org.kepler.loader.util
A utility class to load workflows.
ParseWorkflow() - Constructor for class org.kepler.loader.util.ParseWorkflow
 
parseWorkflow(File) - Static method in class org.kepler.loader.util.ParseWorkflow
Parse a workflow MoML XML or KAR file.
parseWorkflows(String[]) - Method in class org.kepler.loader.util.ParseWorkflow
Load workflows.
ParseWorkflowUtil - Class in org.kepler.util
A utility class to parse workflows and related files.
ParseWorkflowUtil() - Constructor for class org.kepler.util.ParseWorkflowUtil
 
parseXml(Reader) - Static method in class org.kepler.kar.karxml.KarXml
 
parseXmlStream(InputStream) - Static method in class org.kepler.kar.karxml.KarXml
 
PARTIAL - Static variable in class ptolemy.vergil.kernel.AttributeController
Indicator to give partial access to the attribute.
PartiallyOrderedToken - Interface in ptolemy.data
An interface for tokens that can be partially ordered.
partitionColumn - Variable in class org.kepler.spark.mllib.SparkSQLQuery
column to partition on
partitionColumns - Variable in class ptolemy.domains.sdf.lib.vq.ImagePartition
The width of the input partitions.
partitionColumns - Variable in class ptolemy.domains.sdf.lib.vq.ImageUnpartition
The width of the input partitions.
partitionerClass - Variable in class org.kepler.ddp.actor.pattern.Map
The name of the PartitionerClass, used only in hadoop for partioning map outputs.
partitionRows - Variable in class ptolemy.domains.sdf.lib.vq.ImagePartition
The height of the input partitions.
partitionRows - Variable in class ptolemy.domains.sdf.lib.vq.ImageUnpartition
The height of the input partitions.
parts - Variable in class org.resurgence.actor.StringAccumulator
The input port, which contains the substrings.
passesFilter(int) - Method in class org.kepler.workflowrunmanager.DurationQueryParse
 
passesFilter(int) - Method in class org.kepler.workflowrunmanager.ExecIdQueryParse
Check if execId passes filter.
passesFilter(Date) - Method in class org.kepler.workflowrunmanager.StartTimeQueryParse
Returns true if input date passes the filter for this StartTimeQueryParse
passThrough - Variable in class ptolemy.actor.lib.WallClockTime
The output port to which the trigger input is passed.
password - Variable in class org.geon.FTPClient
Authentication password
password - Variable in class org.geon.OpenDBConnection
 
password - Variable in class org.kepler.authentication.AuthenticationService
 
password - Variable in class org.sdm.spa.MessageBasedWebService
Deprecated.
The password to invoke the web service if necessary.
password - Variable in class org.sdm.spa.WebService
The password to invoke the web service if necessary.
password - Variable in class org.sdm.spa.WebServiceStub
Deprecated.
 
password - Variable in class org.sdm.spa.WSWithComplexTypes
The password for authentication.
PasswordAttribute - Class in ptolemy.actor.gui
An attribute that represents a password.
PasswordAttribute(CompositeEntity, String) - Constructor for class ptolemy.actor.gui.PasswordAttribute
Construct a password attribute with the given container and name.
passwordParam - Variable in class org.ecoinformatics.seek.ecogrid.EcogridWriter
Password for this user
paste() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Assuming the contents of the clipboard is MoML code, paste it into the current model by issuing a change request.
PASTE_OFFSET - Static variable in class ptolemy.vergil.toolbox.FigureAction
Offset used when pasting objects.
PasteAction() - Constructor for class ptolemy.vergil.basic.BasicGraphFrame.PasteAction
Create a new action to paste the current contents of the clipboard into the current model.
PatchChecker - Class in org.kepler.modulemanager.gui.patch
Created by David Welker.
PatchChecker() - Constructor for class org.kepler.modulemanager.gui.patch.PatchChecker
 
path - Variable in class org.kepler.actor.RandomDirectoryMaker
The output port, which contains the new directory path.
path - Variable in class org.kepler.actor.RecordOperation
The path to operate on.
path - Variable in class org.kepler.ddp.actor.pattern.AtomicPathActor
The path to read/write the data.
path - Variable in class org.kepler.gui.TreeAction
 
path - Variable in class org.resurgence.actor.DirectoryMaker
The output port, which contains the new directory path.
path - Variable in class org.srb.SProxy
Path to SRB file.
path(Node) - Method in interface ptolemy.graph.analysis.analyzer.SingleSourceLongestPathAnalyzer
Return the longest path from node "startNode" to node "endNode" in the form of an ordered list.
path(Node) - Method in class ptolemy.graph.analysis.SingleSourceLongestPathAnalysis
Return the longest path from node "startNode" to node "endNode" in the form of an ordered list.
path(Node) - Method in class ptolemy.graph.analysis.strategy.AllEdgeSingleSourceLongestPathStrategy
Return the longest path from node startNode to node endNode in the form of an ordered list.
pathExistence(Node, Node) - Method in interface ptolemy.graph.analysis.analyzer.TransitiveClosureAnalyzer
Check if there exist a path between a starting node "startNode" and an ending node "endNode" on the graph under analysis.
pathExistence(Node, Node) - Method in class ptolemy.graph.analysis.strategy.FloydWarshallTransitiveClosureStrategy
Check if there exist a path between a starting node and an ending node on the analyzer's graph.
pathExistence(Node, Node) - Method in class ptolemy.graph.analysis.TransitiveClosureAnalysis
Check if there exist a path between a starting node "startNode" and an ending node "endNode" on the graph under analysis.
pathLength(Node) - Method in interface ptolemy.graph.analysis.analyzer.SingleSourceLongestPathAnalyzer
Return the length of the longest path from node "startNode" to node "endNode".
pathLength(Node) - Method in class ptolemy.graph.analysis.SingleSourceLongestPathAnalysis
Return the length of the longest path from node "startNode" to node "endNode".
pathLength(Node) - Method in class ptolemy.graph.analysis.strategy.AllEdgeSingleSourceLongestPathStrategy
Return the length of the longest path from node startNode to node endNode.
pathRep(File) - Static method in class org.kepler.util.FileUtil
Return a string array representation of the file path.
pattern - Variable in class ptolemy.actor.lib.io.DirectoryListing
If non-empty, then only output file and directory names that match the specified (regular expression) pattern.
pattern - Variable in class ptolemy.actor.lib.string.StringMatches
The regular expression to be pattern matched with the matchString string.
pattern - Variable in class ptolemy.actor.lib.string.StringReplace
The pattern used to pattern match and replace the stringToEdit string.
pattern - Variable in class ptolemy.actor.lib.string.StringSimpleReplace
Deprecated.
The pattern used to pattern match and replace the stringToEdit string.
paupCmdFile - Variable in class org.cipres.kepler.PAUPConsensusTrees
The parameter for PAUP command file.
paupCmdFile - Variable in class org.cipres.kepler.PAUPInfer
The parameter for PAUP command file.
PAUPConsensusTrees - Class in org.cipres.kepler
This actor calls PAUP to find consensus trees for a group of trees.
PAUPConsensusTrees(CompositeEntity, String) - Constructor for class org.cipres.kepler.PAUPConsensusTrees
Construct PAUPConsensusTrees source with the given container and name.
PAUPInfer - Class in org.cipres.kepler
This actor calls PAUP for tree inference using parsimony.
PAUPInfer(CompositeEntity, String) - Constructor for class org.cipres.kepler.PAUPInfer
Construct PAUPInfer source with the given container and name.
Pause - Class in org.sdm.spa
This actor is used for putting an expected pause in the workflow specification to allow for execution to pause until the outputs until that time are reviewed and the workflow is paused.
Pause(CompositeEntity, String) - Constructor for class org.sdm.spa.Pause
Construct an actor in the specified container with the specified name.
Pause - Class in ptolemy.actor.lib
An actor that pauses execution of a model when it receives a true token on any input channel.
Pause(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Pause
Construct an actor in the specified container with the specified name.
pause() - Method in class ptolemy.actor.Manager
Set a flag requesting that execution pause at the next opportunity (between iterations).
pause() - Method in class ptolemy.plot.PlotLive
Pause the plot.
PAUSED - Static variable in class ptolemy.actor.Manager
Indicator that the execution is paused.
PAUSED_ON_BREAKPOINT - Static variable in class ptolemy.actor.Manager
Indicator that the execution is paused on a breakpoint.
pauseOnBreakpoint(String) - Method in class ptolemy.actor.Manager
The thread that calls this method will wait until resume() has been called.
pauseRun() - Method in class ptolemy.actor.gui.ModelPane
If the model has a manager and is executing, then pause execution by calling the pause() method of the manager.
pauseRun() - Method in class ptolemy.actor.gui.run.CustomizableRunPane
If the model has a manager and is executing, then pause execution by calling the pause() method of the manager.
pdf2png(File, File) - Static method in class org.kepler.reporting.rio.util.ImageUtil
Implementation uses JPedal.
PDFAttribute - Class in ptolemy.vergil.pdfrenderer
This is an attribute that renders the first page of a specified PDF file.
PDFAttribute(NamedObj, String) - Constructor for class ptolemy.vergil.pdfrenderer.PDFAttribute
Construct an attribute with the given name contained by the specified container.
PDFIcon - Class in ptolemy.vergil.pdfrenderer
An icon that displays a specified PDF page.
PDFIcon(NamedObj, String) - Constructor for class ptolemy.vergil.pdfrenderer.PDFIcon
Create a new icon with the given name in the given container.
pdfRIO(ReportInstance) - Static method in class org.kepler.reporting.rio.RIORenderer
Deprecated.
 
peakIndices - Variable in class ptolemy.actor.lib.ArrayPeakSearch
The output port for the indices of the peaks.
peakValues - Variable in class ptolemy.actor.lib.ArrayPeakSearch
The output port for the values of the peaks.
peekNode() - Method in class ptolemy.data.expr.JJTMatrixParserState
 
peekNode() - Method in class ptolemy.data.expr.JJTPtParserState
 
peekProxy(String) - Method in class org.kepler.authentication.AuthenticationManager
 
PendingEvent() - Constructor for class ptolemy.actor.lib.TimeDelay.PendingEvent
 
perform() - Method in class ptolemy.actor.gui.properties.ActionGUIProperty
Perform this action.
perform(boolean) - Method in class ptolemy.actor.gui.properties.GUIAction
React to this item being selected.
performAction() - Method in interface ptolemy.kernel.attributes.Actionable
Perform the named action.
Perimeter - Class in org.kepler.gis.actor.calc
Calculate the perimeter of a GIS data set.
Perimeter(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.calc.Perimeter
Create a new Perimeter in a container with a specific name.
period - Variable in class ptolemy.actor.lib.Clock
Deprecated.
The period of the output waveform.
period - Variable in class ptolemy.actor.lib.DiscreteClock
The period of the output waveform.
period - Variable in class ptolemy.actor.lib.Interpolator
The period of the reference values.
period - Variable in class ptolemy.actor.lib.SequentialClock
Deprecated.
The period of the output waveform.
PERIOD - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
period - Variable in class ptolemy.domains.continuous.lib.EventSource
Deprecated.
The period of the output events.
period - Variable in class ptolemy.domains.sdf.kernel.SDFDirector
The time period of each iteration.
PERIOD - Static variable in class ptolemy.math.Precision.PrecisionFormat
Regular expression definition for a Period ".".
periodControl - Variable in class ptolemy.actor.lib.VariableClock
Deprecated.
The port that controls the value of the period parameter.
periodic - Variable in class ptolemy.actor.lib.gui.SketchedSource
An indicator of whether the signal should be periodically repeated.
PeriodicDirector - Interface in ptolemy.actor.util
Interface for directors that have a period parameter.
PeriodicDirectorHelper - Class in ptolemy.actor.util
This is a helper class for directors implementing PeriodicDirector.
PeriodicDirectorHelper(PeriodicDirector) - Constructor for class ptolemy.actor.util.PeriodicDirectorHelper
Construct a new helper.
PeriodicSampler - Class in ptolemy.domains.continuous.lib
This actor generates discrete events by periodically sampling the input signal.
PeriodicSampler(CompositeEntity, String) - Constructor for class ptolemy.domains.continuous.lib.PeriodicSampler
Construct an actor in the specified container with the specified name.
periodValue() - Method in interface ptolemy.actor.util.PeriodicDirector
Return the value of the period as a double.
periodValue() - Method in class ptolemy.domains.sdf.kernel.SDFDirector
Return the value of the period as a double.
PermanentStringConstant - Class in org.resurgence.actor
This actor generates a sequence of the input string.
PermanentStringConstant(CompositeEntity, String) - Constructor for class org.resurgence.actor.PermanentStringConstant
Construct a PermanentStringConstant with the given container and name.
permission - Variable in class org.srb.SProxy
Files permissions.
PermissionManager - Class in org.kepler.loader
Created by David Welker.
PermissionManager() - Constructor for class org.kepler.loader.PermissionManager
 
persistDataAfterWorkflowEnd - Variable in class org.kepler.data.datasource.dataturbine.DataTurbineWriter
If true, data written to DataTurbine server will be accessible after workflow ends.
persistence - Variable in class ptolemy.actor.lib.gui.SequenceScope
The number of samples to be displayed at any one time (an integer).
persistence - Variable in class ptolemy.actor.lib.gui.TimedScope
The amount of data displayed at any one time (a double).
persistence - Variable in class ptolemy.actor.lib.gui.XYScope
The number of samples from each input channel displayed at any one time (an integer).
persistentTrigger - Variable in class ptolemy.domains.de.lib.Queue
If set to true, then if a trigger arrives when the queue is empty, it is remembered, and the next time an input arrives, it is sent immediately to the output.
PETITE - Static variable in class ptolemy.data.type.BaseType
The petite data type.
PetiteToken - Class in ptolemy.data
A token that contains a number which is essentially a simulation equivalent for fixed point numbers in embedded processors.
PetiteToken() - Constructor for class ptolemy.data.PetiteToken
Construct a PetiteToken with value 0.0.
PetiteToken(double) - Constructor for class ptolemy.data.PetiteToken
Construct a PetiteToken with the specified value.
PetiteToken(String) - Constructor for class ptolemy.data.PetiteToken
Construct a PetiteToken from the specified string.Ensure the value is adjusted within the range of a PetiteToken.
petiteValue() - Method in class ptolemy.data.PetiteToken
Return the value in the token.
PGMReader - Class in ptolemy.actor.lib.image
Read a PGM file and output it as an occupancy grid.
PGMReader(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.image.PGMReader
Construct an actor with the given container and name.
phase - Variable in class ptolemy.domains.sdf.lib.DownSample
The phase of the output with respect to the input.
phase - Variable in class ptolemy.domains.sdf.lib.UpSample
The phase of the output with respect to the input.
phase(Complex[]) - Static method in class ptolemy.math.ComplexArrayMath
Return a new array containing the angles of the elements of the specified complex array.
PhaseUnwrap - Class in ptolemy.actor.lib
This actor unwraps a phase plot, removing discontinuities of magnitude 2*PI.
PhaseUnwrap(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.PhaseUnwrap
Construct an actor with the given container and name.
PhyloDataReader - Class in org.cipres.kepler
The PhyloDataReader actor reads and parses the data stored in Nexus format.
PhyloDataReader(CompositeEntity, String) - Constructor for class org.cipres.kepler.PhyloDataReader
Construct a PhyloDataReader actor with the given container and name.
physicalPath - Variable in class org.srb.SGetPhysicalLocation
Paths to the local location.
PI_OVER_2 - Static variable in class ptolemy.math.ExtendedMath
PI / 2.
PI_OVER_4 - Static variable in class ptolemy.math.ExtendedMath
PI / 4.
Picture - Class in ptolemy.media
A component that displays an image.
Picture(int, int) - Constructor for class ptolemy.media.Picture
Create an image with the specified width and height, in pixels.
PID - Class in ptolemy.domains.de.lib
Generate PID output for a given input.
PID(CompositeEntity, String) - Constructor for class ptolemy.domains.de.lib.PID
Construct an actor with the given container and name.
pipePathPrefix - Variable in class ptolemy.actor.lib.gem5.Gem5Wrapper
The prefix of the file path for the pipe used for communicating with gem5 simulator.
PIXEL - Static variable in class com.jgoodies.forms.layout.ConstantSize
 
pixel(int) - Static method in class com.jgoodies.forms.layout.Sizes
Creates and returns a ConstantSize for the specified pixel value.
pk - Variable in class ptolemy.actor.lib.colt.ColtZeta
pk.
PK_INTEGER - Static variable in class org.kepler.util.sql.Column
A primary key integer column.
PK_MD5_BINARY - Static variable in class org.kepler.util.sql.Column
 
PK_MD5_TEXT - Static variable in class org.kepler.util.sql.Column
A primary key MD5 text column.
PK_TEXT - Static variable in class org.kepler.util.sql.Column
A primary key text column.
PK_UUID_TEXT - Static variable in class org.kepler.util.sql.Column
A column for text UUIDs that are primary keys.
place(Container) - Method in class org.sdm.spa.gui.UserInteractiveShell
Specify the container into which this shell should be placed.
place(Container) - Method in class org.sdm.spa.TextualInteractionShell
Specify the container into which this shell should be placed.
place(Container) - Method in class ptolemy.actor.gui.AbstractPlaceableActor
Specify the container into which this object should be placed.
place(Container) - Method in interface ptolemy.actor.gui.Placeable
Specify the container into which this object should be placed.
place(PortableContainer) - Method in interface ptolemy.actor.injection.PortablePlaceable
Place the object that implements this interface into the specified container.
place(PortableContainer) - Method in class ptolemy.actor.lib.gui.ConstPlaceable
Place the visual representation of the actor into the specified container.
place(PortableContainer) - Method in class ptolemy.actor.lib.gui.Display
Specify the container into which this object should be placed.
place(PortableContainer) - Method in interface ptolemy.actor.lib.gui.DisplayInterface
Specify the container in which the data should be displayed.
place(PortableContainer) - Method in class ptolemy.actor.lib.gui.DisplayJavaSE
Specify the container in which the data should be displayed.
place(Container) - Method in class ptolemy.actor.lib.gui.InteractiveDialog
Specify the container into which this shell should be placed.
place(Container) - Method in class ptolemy.actor.lib.gui.InteractiveShell
Specify the container into which this shell should be placed.
place(Container) - Method in class ptolemy.actor.lib.gui.MatrixViewer
Specify the container in which the data should be displayed.
place(PortableContainer) - Method in class ptolemy.actor.lib.gui.MonitorValue
Place the visual representation of the actor into the specified container.
place(PortableContainer) - Method in class ptolemy.actor.lib.gui.PlotterBase
Specify the container into which this plot should be placed.
place(PortableContainer) - Method in class ptolemy.actor.lib.gui.SketchedSource
Override the base class to create an initial trace.
place(Container) - Method in class ptolemy.actor.lib.gui.SliderSource
Specify the container in which the slider should be displayed.
place(PortableContainer) - Method in interface ptolemy.actor.lib.gui.TextFieldContainerInterface
Place the visual representation of the actor into the specified container.
place(PortableContainer) - Method in class ptolemy.actor.lib.gui.TextFieldContainerJavaSE
Place the visual representation of the actor into the specified container.
place(Container) - Method in class ptolemy.actor.lib.image.ImageDisplay
Set the container that this actor should image display data in.
place(Container) - Method in class ptolemy.domains.de.lib.EventButton
Deprecated.
An instance of JButton will be added to the specified container.
place(Container) - Method in class ptolemy.vergil.actor.lib.ModelDisplay
Place the display in the specified container.
Placeable - Interface in ptolemy.actor.gui
Interface for objects that have UI components that can be placed in containers.
placeContainer(Container) - Method in interface ptolemy.actor.lib.image.ImageDisplayInterface
Set the container to be placed.
placeContainer(Container) - Method in class ptolemy.actor.lib.image.ImageDisplayJavaSE
Remove the plot from the frame if the container is null.
placemarkNameProperty - Variable in class org.kepler.gis.actor.kml.KMLWriter
The name of the property specifying the placemark name.
play(Integer) - Method in class org.kepler.provenance.RecordPlayer
Play a specific execution.
play(Integer, CompositeActor) - Method in class org.kepler.provenance.RecordPlayer
Play a specific execution for a workflow.
Plot - Class in org.kepler.plotting
Created by IntelliJ IDEA.
Plot(TableauFrame) - Constructor for class org.kepler.plotting.Plot
 
plot - Variable in class ptolemy.actor.gui.CommunicationAspectMonitor
The plotter.
plot - Variable in class ptolemy.actor.gui.ExecutionAspectPlotterEditorFactory
The plot displayed by this ScheduleFactory.
plot - Variable in class ptolemy.actor.gui.PlotTableauFrame
The plot object held by this frame.
plot - Variable in class ptolemy.actor.lib.gui.PlotterBase
The plot object.
Plot - Class in ptolemy.plot
A flexible signal plotter.
Plot() - Constructor for class ptolemy.plot.Plot
 
plot() - Method in class ptolemy.plot.PlotApplet
Return the plot object to operate on.
plot - Variable in class ptolemy.plot.PlotFrame
The plot object held by this frame.
PlotApplet - Class in ptolemy.plot
An Applet that can plot data from a URL.
PlotApplet() - Constructor for class ptolemy.plot.PlotApplet
 
PlotApplication - Class in ptolemy.plot
PlotApplication is a versatile two-dimensional data plotter application.
PlotApplication() - Constructor for class ptolemy.plot.PlotApplication
Construct a plot with no command-line arguments.
PlotApplication(String[]) - Constructor for class ptolemy.plot.PlotApplication
Construct a plot with the specified command-line arguments.
PlotApplication(PlotBox, String[]) - Constructor for class ptolemy.plot.PlotApplication
Construct a plot with the specified command-line arguments and instance of plot.
PlotApplication(PlotBox) - Constructor for class ptolemy.plot.PlotApplication
Display the given plot.
PlotBox - Class in ptolemy.plot
A labeled box within which to place a data plot.
PlotBox() - Constructor for class ptolemy.plot.PlotBox
Construct a plot box with a default configuration.
PlotBox.DragListener - Class in ptolemy.plot
Draw the zoom box.
PlotBox.MoveListener - Class in ptolemy.plot
Move the items in the plot.
PlotBox.MoveMotionListener - Class in ptolemy.plot
Track how the mouse with button 3 pressed is moved.
PlotBox.ZoomListener - Class in ptolemy.plot
Handle mouse pressed events to provide zoom functionality.
PlotBox.ZoomListener2 - Class in ptolemy.plot
Zoom with the mouse wheel.
PlotBoxInterface - Interface in ptolemy.plot
Definitions for an object that contains a plotter.
PlotBoxMLParser - Class in ptolemy.plot.plotml
This class constructs a plot from specifications in PlotML (Plot Markup Language), which is an XML language.
PlotBoxMLParser(PlotBoxInterface) - Constructor for class ptolemy.plot.plotml.PlotBoxMLParser
Construct an parser to parse commands for the specified plot object.
PlotBoxMLParser() - Constructor for class ptolemy.plot.plotml.PlotBoxMLParser
Protected constructor allows derived classes to set _plot differently.
PlotDemo - Class in ptolemy.plot.demo
Plot a variety of test signals.
PlotDemo() - Constructor for class ptolemy.plot.demo.PlotDemo
 
PlotEditor - Class in org.kepler.plotting
Created by IntelliJ IDEA.
PlotEditor(PlotsEditorPanel, Plot) - Constructor for class org.kepler.plotting.PlotEditor
 
PlotEditor() - Constructor for class org.kepler.plotting.PlotEditor
 
PlotEffigy - Class in ptolemy.actor.gui
An effigy for a plot file.
PlotEffigy(Workspace) - Constructor for class ptolemy.actor.gui.PlotEffigy
Create a new effigy in the specified workspace with an empty string for its name.
PlotEffigy(CompositeEntity, String) - Constructor for class ptolemy.actor.gui.PlotEffigy
Create a new effigy in the given directory with the given name.
PlotEffigy.Factory - Class in ptolemy.actor.gui
A factory for creating new effigies.
PlotFormatter - Class in ptolemy.plot
PlotFormatter is a panel that controls the format of a plotter object passed to the constructor.
PlotFormatter(PlotBox) - Constructor for class ptolemy.plot.PlotFormatter
Construct a plot formatter for the specified plot object.
PlotFourierSeries - Class in ptolemy.plot.demo
Plot a Fourier series approximation to a square wave.
PlotFourierSeries() - Constructor for class ptolemy.plot.demo.PlotFourierSeries
 
PlotFrame - Class in ptolemy.plot
PlotFrame is a versatile two-dimensional data plotter that runs as part of an application, but in its own window.
PlotFrame() - Constructor for class ptolemy.plot.PlotFrame
Construct a plot frame with a default title and by default contains an instance of Plot.
PlotFrame(String) - Constructor for class ptolemy.plot.PlotFrame
Construct a plot frame with the specified title and by default contains an instance of Plot.
PlotFrame(String, PlotBox) - Constructor for class ptolemy.plot.PlotFrame
Construct a plot frame with the specified title and the specified instance of PlotBox.
PlotInterface - Interface in ptolemy.plot
Definitions for an object that plots data.
PlotLive - Class in ptolemy.plot
Plot signals dynamically, where points can be added at any time and the display will be updated.
PlotLive() - Constructor for class ptolemy.plot.PlotLive
 
PlotLiveApplet - Class in ptolemy.plot
An Applet for the PlotLive class.
PlotLiveApplet() - Constructor for class ptolemy.plot.PlotLiveApplet
 
PlotLiveDemo - Class in ptolemy.plot.demo
Dynamically plot a test signal, illustrating how to use the PlotLive class.
PlotLiveDemo() - Constructor for class ptolemy.plot.demo.PlotLiveDemo
Construct a plot for live, animated signal display.
PlotLiveDemoApplet - Class in ptolemy.plot.demo
An Applet that demonstrates the PlotLiveDemo class.
PlotLiveDemoApplet() - Constructor for class ptolemy.plot.demo.PlotLiveDemoApplet
 
PlotML_DTD_1 - Static variable in class ptolemy.plot.plotml.PlotBoxMLParser
The standard PlotML DTD, represented as a string.
PlotMLApplet - Class in ptolemy.plot.plotml
An Applet that can plot data in PlotML format from a URL.
PlotMLApplet() - Constructor for class ptolemy.plot.plotml.PlotMLApplet
 
PlotMLApplication - Class in ptolemy.plot.plotml
An application that can plot data in PlotML format from a URL or from files specified on the command line.
PlotMLApplication() - Constructor for class ptolemy.plot.plotml.PlotMLApplication
Construct a plot with no command-line arguments.
PlotMLApplication(String[]) - Constructor for class ptolemy.plot.plotml.PlotMLApplication
Construct a plot with the specified command-line arguments.
PlotMLApplication(PlotBox, String[]) - Constructor for class ptolemy.plot.plotml.PlotMLApplication
Construct a plot with the specified command-line arguments and instance of plot.
PlotMLFrame - Class in ptolemy.plot.plotml
PlotMLFrame is a versatile two-dimensional data plotter that runs as part of an application, but in its own window.
PlotMLFrame() - Constructor for class ptolemy.plot.plotml.PlotMLFrame
Construct a plot with no command-line arguments.
PlotMLFrame(String) - Constructor for class ptolemy.plot.plotml.PlotMLFrame
Construct a plot frame with the specified title and by default contains an instance of Plot.
PlotMLFrame(String, PlotBox) - Constructor for class ptolemy.plot.plotml.PlotMLFrame
Construct a plot frame with the specified title and the specified instance of PlotBox.
PlotMLParser - Class in ptolemy.plot.plotml
This class constructs a plot from specifications in PlotML (Plot Markup Language), which is an XML language.
PlotMLParser(PlotInterface) - Constructor for class ptolemy.plot.plotml.PlotMLParser
Construct an parser to parse commands for the specified plot object.
PlotMLParser() - Constructor for class ptolemy.plot.plotml.PlotMLParser
Protected constructor allows derived classes to set _plot differently.
PlotPoint - Class in ptolemy.plot
A simple structure for storing a plot point.
PlotPoint() - Constructor for class ptolemy.plot.PlotPoint
 
PlotsEditorPanel - Class in org.kepler.gui
 
PlotsEditorPanel(TableauFrame, String) - Constructor for class org.kepler.gui.PlotsEditorPanel
 
PlotsEditorPanel.Factory - Class in org.kepler.gui
 
PlotsPanel - Class in org.kepler.gui
A tab pane to display sensor data.
PlotsPanel(TableauFrame, String) - Constructor for class org.kepler.gui.PlotsPanel
Construct a new PlotsPanel in a frame with a specific title.
PlotsPanel.ViewerFactory - Class in org.kepler.gui
A factory to create PlotsPanels.
PlotTableau - Class in ptolemy.actor.gui
A tableau representing a plot in a toplevel window.
PlotTableau(Effigy, String) - Constructor for class ptolemy.actor.gui.PlotTableau
Construct a new tableau for the model represented by the given effigy.
PlotTableau.Factory - Class in ptolemy.actor.gui
A factory that creates a plot tableau for Ptolemy models.
PlotTableauFrame - Class in ptolemy.actor.gui
PlotTableauFrame is a version of PlotFrame in the plot package that works more closely with the Ptolemy actor.gui infrastructure.
PlotTableauFrame() - Constructor for class ptolemy.actor.gui.PlotTableauFrame
Construct a plot frame with a default title and by default contains an instance of Plot.
PlotTableauFrame(Tableau) - Constructor for class ptolemy.actor.gui.PlotTableauFrame
Construct a plot frame in the corresponding Tableau with the specified instance of PlotBox.
PlotTableauFrame(Tableau, PlotBox) - Constructor for class ptolemy.actor.gui.PlotTableauFrame
Construct a plot frame with the specified title and by default contains an instance of Plot.
PlotTableauFrame(Tableau, PlotBox, Placeable) - Constructor for class ptolemy.actor.gui.PlotTableauFrame
Construct a plot frame with the specified title and by default contains an instance of Plot.
PlotTableauFrame(Tableau, PlotBox, PortablePlaceable) - Constructor for class ptolemy.actor.gui.PlotTableauFrame
Construct a plot frame with the specified title and by default contains an instance of Plot.
PlotTableauFrame.ExportImageAction - Class in ptolemy.actor.gui
Export an image of a plot.
Plotter - Class in ptolemy.actor.lib.gui
Base class for plotters.
Plotter(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.gui.Plotter
Construct an actor with the given container and name.
PlotterBase - Class in ptolemy.actor.lib.gui
Base class for plotters.
PlotterBase(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.gui.PlotterBase
Construct an actor with the given container and name.
PlotterBaseInterface - Interface in ptolemy.actor.lib.gui
Interface encapsulating platform dependent code of the PlotterBase from the platform independent parts.
PlotterBaseJavaSE - Class in ptolemy.actor.lib.gui
Java SE implementation of PlotterBaseInterface.
PlotterBaseJavaSE() - Constructor for class ptolemy.actor.lib.gui.PlotterBaseJavaSE
 
PlotterBaseJavaSE.PlotWindowTableau - Class in ptolemy.actor.lib.gui
Tableau that creates a PlotterPlotFrame.
PlottingConstants - Class in org.kepler.plotting
Created by IntelliJ IDEA.
PlottingConstants() - Constructor for class org.kepler.plotting.PlottingConstants
 
PlottingController - Interface in org.kepler.plotting
Created by IntelliJ IDEA.
PlottingControllerFactory - Interface in org.kepler.plotting
Created by IntelliJ IDEA.
PlottingFactory(NamedObj, String) - Constructor for class org.kepler.reporting.gui.ItemsOfInterestPanel.PlottingFactory
 
PlotWindowTableau(PlotEffigy, String) - Constructor for class ptolemy.actor.lib.gui.PlotterBaseJavaSE.PlotWindowTableau
Construct a new tableau for the model represented by the given effigy.
plus - Variable in class ptolemy.actor.lib.AddSubtract
Input for tokens to be added.
PLUS - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
PLUS - Static variable in interface ptolemy.moml.unit.UParserConstants
RegularExpression Id.
plusInfinity(Quantization) - Method in class ptolemy.math.Overflow
Return the value of plus infinity, or null if unrepresentable.
plusInfinity(Quantization) - Method in class ptolemy.math.Overflow.Saturate
 
plusInfinity(Quantization) - Method in class ptolemy.math.Overflow.ToZero
 
pmf - Variable in class ptolemy.actor.lib.comm.HuffmanBasic
The probability mass function.
pmf - Variable in class ptolemy.actor.lib.DiscreteRandomSource
The probability mass function.
PNDirector - Class in ptolemy.domains.pn.kernel
A PNDirector governs the execution of a CompositeActor with extended Kahn-MacQueen process networks (PN) semantics.
PNDirector() - Constructor for class ptolemy.domains.pn.kernel.PNDirector
Construct a director in the default workspace with an empty string as its name.
PNDirector(Workspace) - Constructor for class ptolemy.domains.pn.kernel.PNDirector
Construct a director in the workspace with an empty name.
PNDirector(CompositeEntity, String) - Constructor for class ptolemy.domains.pn.kernel.PNDirector
Construct a director in the given container with the given name.
PNProcessEvent - Class in ptolemy.domains.pn.kernel.event
An event passed from a process executing under the PN semantics to a PNProcessListener.
PNProcessEvent(Actor, int) - Constructor for class ptolemy.domains.pn.kernel.event.PNProcessEvent
Create a new event.
PNProcessEvent(Actor, int, int) - Constructor for class ptolemy.domains.pn.kernel.event.PNProcessEvent
Create a new event that corresponds to an exception caught by the process.
PNProcessEvent(Actor, Exception) - Constructor for class ptolemy.domains.pn.kernel.event.PNProcessEvent
Create a new event that corresponds to an exception caught by the process.
PNProcessListener - Interface in ptolemy.domains.pn.kernel.event
An PNProcessListener is able to receive PNProcessEvents that are issued during the execution of a process by a ProcessThread or director in PN.
PNQueueReceiver - Class in ptolemy.domains.pn.kernel
A receiver with a FIFO queue that blocks the calling process on a read if the FIFO queue is empty and on a write if the queue is full.
PNQueueReceiver() - Constructor for class ptolemy.domains.pn.kernel.PNQueueReceiver
Construct an empty receiver with no container.
PNQueueReceiver(IOPort) - Constructor for class ptolemy.domains.pn.kernel.PNQueueReceiver
Construct an empty receiver with the specified container.
POINT - Static variable in class com.jgoodies.forms.layout.ConstantSize
 
point - Variable in class org.geon.AddPointToSVG
Point to be added.
point - Variable in class org.geon.Get2DPoint
The classification point.
point - Variable in class org.geon.GetPoint
The classification point.
point - Variable in class org.geon.PointinPolygon
A classification point.
point - Variable in class org.geon.PointinPolygonXY
A classification point.
point - Variable in class org.geon.PolygonUtil
 
pointAsPixel(int, Component) - Static method in class com.jgoodies.forms.layout.Sizes
Converts DTP Points and returns pixels using the resolution of the given component's graphics object.
pointAsPixel(int, Component) - Method in class com.jgoodies.forms.util.AbstractUnitConverter
Converts DTP Points and returns pixels using the resolution of the given component's graphics object.
pointAsPixel(int, int) - Method in class com.jgoodies.forms.util.AbstractUnitConverter
Converts DTP Points and returns pixels using the specified resolution.
pointAsPixel(int, Component) - Method in interface com.jgoodies.forms.util.UnitConverter
Converts DTP Points and returns pixels using the resolution of the given component's graphics object.
pointFileName - Variable in class org.ecoinformatics.seek.gis.grass.GISHullActor
 
pointFileName - Variable in class org.ecoinformatics.seek.gis.java_gis.GARPSummary
'pointFileName' is the file of testing locations (long, lat) used to evaluate the prediction
pointFileName - Variable in class org.ecoinformatics.seek.gis.java_gis.GISHullActorJ
'pointFileName' is a tab delimited text file with x,y input points
PointinPolygon - Class in org.geon
This actor receives an array of polygon points and populates them in a polygon object it also receives a classification point.
PointinPolygon(CompositeEntity, String) - Constructor for class org.geon.PointinPolygon
Construct an actor with the given container and name.
PointinPolygonXY - Class in org.geon
This actor receives an array of polygons and regions and a classification point.
PointinPolygonXY(CompositeEntity, String) - Constructor for class org.geon.PointinPolygonXY
Construct an actor with the given container and name.
PointType - Enum in org.kepler.plotting
Created by IntelliJ IDEA.
PoissonClock - Class in ptolemy.actor.lib
This actor produces discrete events according to a Poisson process.
PoissonClock(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.PoissonClock
Construct an actor with the specified container and name.
PolarToCartesian - Class in ptolemy.actor.lib.conversions
This actor reads two double tokens (magnitude and angle) and outputs two new double tokens (x and y).
PolarToCartesian(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.conversions.PolarToCartesian
Construct an actor with the given container and name.
PolarToComplex - Class in ptolemy.actor.lib.conversions
This actor reads two double tokens (magnitude and angle) and outputs a single complex token.
PolarToComplex(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.conversions.PolarToComplex
Construct an actor with the given container and name.
polarToComplex(double, double) - Static method in class ptolemy.math.Complex
Return a new complex number with the specified magnitude and angle.
poleZeroToFrequency(Complex[], Complex[], Complex, int) - Static method in class ptolemy.math.SignalProcessing
Given an array of pole locations, an array of zero locations, and a gain term, return frequency response specified by these.
policy - Variable in class ptolemy.actor.lib.CatchExceptionAttribute
The error handling policy to apply if an exception occurs.
policy - Variable in class ptolemy.actor.lib.ExceptionManager
The error handling policy to apply if an exception occurs.
Poly - Variable in class org.geon.PolygonUtil
 
polygonRegions - Variable in class org.geon.PointinPolygon
A set of polygons and their region names.
polygonRegions - Variable in class org.geon.PointinPolygonXY
A set of polygons and their region names.
PolygonUtil - Class in org.geon
 
PolygonUtil() - Constructor for class org.geon.PolygonUtil
Constructor for PolygonUtil.
PolygonUtil(DoublePolygon, String) - Constructor for class org.geon.PolygonUtil
 
polynomial - Variable in class ptolemy.actor.lib.comm.DeScrambler
Integer defining a polynomial with binary coefficients.
polynomial - Variable in class ptolemy.actor.lib.comm.Scrambler
Integer defining a polynomial with binary coefficients.
polynomial(Complex[]) - Static method in class ptolemy.math.ComplexArrayMath
Given the roots of a polynomial, return a polynomial that has has such roots.
polynomialArray - Variable in class ptolemy.actor.lib.comm.ConvolutionalCoder
An array of integers defining an array of polynomials with binary coefficients.
polynomialArray - Variable in class ptolemy.actor.lib.comm.ViterbiDecoder
An array of integers defining polynomials with binary coefficients.
PolynomialSampleGenerator(double[], int) - Constructor for class ptolemy.math.SignalProcessing.PolynomialSampleGenerator
Construct a PolynomialSampleGenerator.
poorlyNamedInput - Variable in class ptolemy.kernel.test.PortNameProblem
 
popNode() - Method in class ptolemy.data.expr.JJTMatrixParserState
 
popNode() - Method in class ptolemy.data.expr.JJTPtParserState
 
populate(File, KeplerLSID, Statement) - Method in class org.kepler.kar.KARCacheContent
Populate this object from the database. setKarLsid() and setLsid() must be called before running this method.
populate(File, Statement) - Method in class org.kepler.kar.KARCached
Populate this object from the database. setLsid() must be called before running this method.
populate(File, Statement) - Method in class org.kepler.kar.KARCacheError
Populate this object from the database. setLsid() must be called before running this method.
populate() - Method in class org.kepler.modulemanager.gui.ModulesList
 
populate() - Method in class org.kepler.modulemanager.gui.SuitesList
 
populate(KeplerLSID, Statement) - Method in class org.kepler.objectmanager.cache.CacheContent
 
populate() - Method in class ptolemy.actor.LazyTypedCompositeActor
Populate the actor by reading the file specified by the source parameter.
populate() - Method in interface ptolemy.kernel.util.LazyComposite
Populate the actor by reading the file specified by the source parameter.
populate() - Method in class ptolemy.moml.EntityLibrary
Populate the actor by reading the file specified by the source parameter.
populateFieldComboboxFromMainList() - Method in class org.ecoinformatics.seek.querybuilder.DBWherePanel
Given a selection in the "main" list it populates the Field Combobox from the table
populateReport(Queryable, ReportLayout, KeplerLSID, int, TableauFrame) - Static method in class org.kepler.reporting.rio.ReportAssembler
 
populateReportWithLatest(Queryable, ReportLayout, KeplerLSID, TableauFrame) - Static method in class org.kepler.reporting.rio.ReportAssembler
 
populateSemanticTypes(Statement) - Method in class org.kepler.kar.KARCacheContent
Populate the semantic types from the CACHE_SEMTYPES table.
populateSemanticTypes(Statement) - Method in class org.kepler.objectmanager.cache.CacheContent
Populate the semantic types from the CACHE_SEMTYPES table.
populations - Variable in class ptolemy.actor.lib.colt.ColtBinomialSelector
The populations to select from.
PopupListener(DBSelectTableUIBase) - Constructor for class org.ecoinformatics.seek.querybuilder.DBSelectTableUIBase.PopupListener
 
PopupMouseFilter - Class in ptolemy.vergil.basic
This class is a mouseFilter that recognizes popup events.
PopupMouseFilter() - Constructor for class ptolemy.vergil.basic.PopupMouseFilter
Create an attribute controller associated with the specified graph controller.
Port - Class in ptolemy.kernel
A Port is the interface of an Entity to any number of Relations.
Port() - Constructor for class ptolemy.kernel.Port
Construct a port in the default workspace with an empty string as its name.
Port(Workspace) - Constructor for class ptolemy.kernel.Port
Construct a port in the specified workspace with an empty string as a name.
Port(Entity, String) - Constructor for class ptolemy.kernel.Port
Construct a port with the given name contained by the specified entity.
PORT - Static variable in interface ptolemy.moml.unit.UParserConstants
RegularExpression Id.
PortableContainer - Interface in ptolemy.actor.injection
Platform independent container for placing UI components into itself.
PortablePlaceable - Interface in ptolemy.actor.injection
This interface is analogous to the Placeable interface.
PortAttribute - Class in org.kepler.moml
This implements a DependencyAttribute for moml properties.
PortAttribute() - Constructor for class org.kepler.moml.PortAttribute
Constructor
PortAttribute(NamedObj, String) - Constructor for class org.kepler.moml.PortAttribute
Constructor
PortAttribute(Workspace) - Constructor for class org.kepler.moml.PortAttribute
Constructor
PortClassChanges - Class in ptolemy.moml.filter
When this class is registered with the MoMLParser.setMoMLFilter() method, it will cause MoMLParser to filter so that models from earlier releases will run in the current release.
PortClassChanges() - Constructor for class ptolemy.moml.filter.PortClassChanges
 
portConfiguration - Variable in class org.sdm.spa.BrowserUI
Output ports configuration.
PortConfigurer - Class in ptolemy.actor.gui
Deprecated.
This class is no longer used. Use PortConfigurerDialog.
PortConfigurer(Entity) - Constructor for class ptolemy.actor.gui.PortConfigurer
Deprecated.
Construct a port configurer for the specified entity.
PortConfigurerDialog - Class in ptolemy.actor.gui
This class is a non-modal dialog for configuring the ports of an entity.
PortConfigurerDialog(DialogTableau, Frame, Entity, Configuration) - Constructor for class ptolemy.actor.gui.PortConfigurerDialog
Construct a dialog that presents the ports as a table.
PortConfigurerDialog.ValidatingComboBoxCellEditor - Class in ptolemy.actor.gui
A validating ComboBox table cell editor for use with JTable.
PortConfigurerDialog.ValidatingJTextFieldCellEditor - Class in ptolemy.actor.gui
A validating JTextField table cell editor for use with JTable.
PortConnector<Id> - Class in org.kepler.provenance
A utility class to map tokens from output to input ports.
PortConnector() - Constructor for class org.kepler.provenance.PortConnector
Construct a new PortConnector.
PortConnectSite - Class in ptolemy.vergil.actor
A site for instances of PortTerminal.
PortConnectSite(Figure, PortTerminal, int, double) - Constructor for class ptolemy.vergil.actor.PortConnectSite
Create a port connect site for the specified figure and id.
PortDialogAction - Class in ptolemy.vergil.kernel
An action that creates a dialog to configure, add, or remove ports from objects.
PortDialogAction(String) - Constructor for class ptolemy.vergil.kernel.PortDialogAction
Construct a rename dialog action with the specified name, which will appear in the menu that uses this action.
PortDialogFactory - Class in ptolemy.vergil.kernel
Deprecated.
Use PortDialogAction.
PortDialogFactory() - Constructor for class ptolemy.vergil.kernel.PortDialogFactory
Deprecated.
 
portEvent(IOPortEvent) - Method in class org.kepler.ddp.actor.ExecutionChoice
Receive a port event.
portEvent(IOPortEvent, Date) - Method in class org.kepler.profiling.gui.ExecutionMonitorPanel.ExecutionMonitorRecording
Record a port event.
portEvent(IOPortEvent) - Method in class org.kepler.provenance.opm.OpenProvenanceModelXML
Deprecated.
Record a port event.
portEvent(IOPortEvent, Date) - Method in class org.kepler.provenance.prov.ProvRecording
Record a port event.
portEvent(IOPortEvent) - Method in class org.kepler.provenance.ProvenanceRecorder
React to a port read or write.
portEvent(IOPortEvent) - Method in class org.kepler.provenance.Recording
Record a port event at the current time.
portEvent(IOPortEvent, Date) - Method in class org.kepler.provenance.Recording
Record a port event at a specific time.
portEvent(IOPortEvent, Date) - Method in class org.kepler.provenance.sql.SQLRecording
Record a port event.
portEvent(IOPortEvent, Date) - Method in class org.kepler.provenance.TextFileRecording
Record a port event.
portEvent(IOPortEvent) - Method in class org.kepler.provenance.XMLRecording
Deprecated.
Record a port event.
portEvent(IOPortEvent) - Method in class org.kepler.webview.actor.WebViewAttribute
 
portEvent(IOPortEvent) - Method in interface ptolemy.actor.IOPortEventListener
Report a port activity.
portEvent(IOPortEvent) - Method in class ptolemy.actor.test.RemoveIOPortEventListener
Remove this IOPortListener from the parent.
portforwarding - Variable in class org.kepler.actor.ssh.SshSession
Port forwarding specification.
PortHasNoContainer - Class in ptolemy.kernel.test
Illustrates a problem with port naming and cloning.
PortHasNoContainer(Workspace, String) - Constructor for class ptolemy.kernel.test.PortHasNoContainer
 
portInfo(TypedIOPort) - Static method in class org.kepler.dataproxy.datasource.opendap.OpendapDataSource
Probe a port
portInfo(TypedIOPort) - Static method in class org.kepler.dataproxy.datasource.opendap.OpendapDataSourceODC
Probe a port
PortInfo(String, Type, boolean) - Constructor for class org.sdm.spa.util.ActorInspector.PortInfo
 
portInput - Variable in class org.sdm.spa.Repeat
Deprecated.
 
PortIOOutlineTabPane - Class in org.kepler.profiling.gui
A tab pane showing a workflow outline of port I/O.
PortIOOutlineTabPane() - Constructor for class org.kepler.profiling.gui.PortIOOutlineTabPane
 
PortIOOutlineTabPane.Factory - Class in org.kepler.profiling.gui
 
portList() - Method in interface org.kepler.ddp.actor.pattern.DDPPatternActor
Get a list of ports.
portList() - Method in class ptolemy.kernel.Entity
Get the ports belonging to this entity.
PortModel() - Constructor for class ptolemy.vergil.actor.ActorGraphModel.PortModel
 
PortModel() - Constructor for class ptolemy.vergil.modal.FSMGraphModel.PortModel
 
PortNameChanges - Class in ptolemy.moml.filter
When this class is registered with the MoMLParser.setMoMLFilter() method, it will cause MoMLParser to filter so that models from earlier releases will run in the current release.
PortNameChanges() - Constructor for class ptolemy.moml.filter.PortNameChanges
 
PortNameProblem - Class in ptolemy.kernel.test
Illustrates a problem with port naming and cloning.
PortNameProblem(Workspace, String) - Constructor for class ptolemy.kernel.test.PortNameProblem
 
portNum - Variable in class org.sdm.spa.Repeat
Deprecated.
 
portOutput - Variable in class org.sdm.spa.Repeat
Deprecated.
 
PortParameter - Class in ptolemy.actor.parameters
This parameter creates an associated port that can be used to update the current value of the parameter.
PortParameter(NamedObj, String) - Constructor for class ptolemy.actor.parameters.PortParameter
Construct a parameter with the given name contained by the specified entity.
PortParameter(NamedObj, String, ParameterPort) - Constructor for class ptolemy.actor.parameters.PortParameter
Construct a parameter with the given name contained by the specified entity.
PortParameter(NamedObj, String, boolean) - Constructor for class ptolemy.actor.parameters.PortParameter
Construct a parameter with the given name contained by the specified entity.
PortParameter(NamedObj, String, Token) - Constructor for class ptolemy.actor.parameters.PortParameter
Construct a Parameter with the given container, name, and Token.
PortRenderer() - Constructor for class ptolemy.vergil.actor.ExternalIOPortController.PortRenderer
 
PortScope() - Constructor for class ptolemy.domains.modal.kernel.FSMActor.PortScope
 
PortSemanticTypeEditorPane - Class in org.kepler.sms.gui
 
PortSemanticTypeEditorPane(Frame, NamedObj, int) - Constructor for class org.kepler.sms.gui.PortSemanticTypeEditorPane
Constructor
portSequences - Variable in class org.sdm.spa.actors.piw.viz.VizActor
 
PortSite - Class in ptolemy.vergil.toolbox
A site that locates itself on the bounds of a figure's shape, designed for placing ports.
PortSite(Figure, Port, int, int, int) - Constructor for class ptolemy.vergil.toolbox.PortSite
Create a new site on the given figure with the given ID port type, and port number.
PortTerminal - Class in ptolemy.vergil.actor
A terminal figure for ports that supports multiports.
PortTerminal(IOPort, Figure, double, boolean) - Constructor for class ptolemy.vergil.actor.PortTerminal
Construct a port terminal with the specified figure as the port figure.
portTypes - Variable in class ptolemy.actor.lib.TypeTest
A record of record of strings representing the types of ports of actors in the model.
portXPath - Variable in class org.sdm.spa.XPath
The XPath expression.
POSITIVE_INFINITY - Static variable in class ptolemy.actor.util.Time
A static and final time constant holding a positive infinity.
POSITIVE_INFINITY - Static variable in class ptolemy.math.Complex
A Complex number representing positive infinity, by which we mean that both the real and imaginary parts are equal to Double.POSITIVE_INFINITY.
possibleDataLoss() - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneAdvanced
Returns whether their will be data loss if this query is converted to a "standard" query meaning we have defined some "where" items, but have not created any "display" items
possibleDataLoss() - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneIntermediate
Returns whether their will be data loss if this query is converted to a "standard" query meaning we have defined some "where" items, but have not created any "display" items
postExecutionProcess(String) - Method in class org.cipres.kepler.ClustalWSeqAlign
After the sequence alignment with ClustalW, the output file usually does not comply with the standard Nexus file format.
postExecutionProcess(String) - Method in class org.cipres.kepler.GUIRunCIPRes
This function processes the output data after the execution.
postfire() - Method in class org.cipres.kepler.ClustalWSeqAlign
Post fire the actor.
postfire() - Method in class org.cipres.kepler.GUIRunCIPRes
Post fire the actor.
postfire() - Method in class org.cipres.kepler.Initializer
Post fire the actor.
postfire() - Method in class org.cipres.kepler.JRunCIPRes
Post fire the actor.
postfire() - Method in class org.cipres.kepler.NexusFileReader
Post fire the actor.
postfire() - Method in class org.cipres.kepler.PAUPConsensusTrees
Post fire the actor.
postfire() - Method in class org.cipres.kepler.PAUPInfer
Post fire the actor.
postfire() - Method in class org.cipres.kepler.PhyloDataReader
Post fire the actor.
postfire() - Method in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource
This method is only for output as byte array.
postfire() - Method in class org.ecoinformatics.seek.gis.java_gis.AddGrids
Post fire the actor.
postfire() - Method in class org.ecoinformatics.seek.gis.java_gis.GARPSummary
Post fire the actor.
postfire() - Method in class org.ecoinformatics.seek.gis.java_gis.GridRescaler
Post fire the actor.
postfire() - Method in class org.ecoinformatics.seek.gis.java_gis.GridReset
Post fire the actor.
postfire() - Method in class org.ecoinformatics.seek.gis.java_gis.MergeGrids
Post fire the actor.
postfire() - Method in class org.ecoinformatics.seek.R.RExpression
 
postfire() - Method in class org.ecoinformatics.seek.R.RExpression2
 
postfire() - Method in class org.geon.BinaryFileReader
Read the next bytes from the file.
postfire() - Method in class org.geon.BinaryFileWriter
Writes the input content to the file.
postfire() - Method in class org.geon.BrowserDisplay
If there are no more URLs to display (the input token was null) returns false.
postfire() - Method in class org.geon.ConstOnce
Deprecated.
Set postfire to false.
postfire() - Method in class org.geon.DatabaseQuery
Takes care of halting the execution in case the query is not updated from a port and hasn't changed.
postfire() - Method in class org.geon.DiagramTransitions
Return false to indicate that the process has finished.
postfire() - Method in class org.geon.FileToArray
Post fire the actor.
postfire() - Method in class org.geon.FileToString
Post fire the actor.
postfire() - Method in class org.geon.FileWrite
Calls LineWriter's postfire and broadcasts the fileName.
postfire() - Method in class org.geon.FilterUI
Post fire the actor.
postfire() - Method in class org.geon.FTPClient
Post fire the actor.
postfire() - Method in class org.geon.GetPoint
Post fire the actor.
postfire() - Method in class org.geon.InvokeService
Set postfire to false.
postfire() - Method in class org.geon.OpenDBConnection
postfiring the actor.
postfire() - Method in class org.geon.PointinPolygon
Post fire the actor.
postfire() - Method in class org.geon.ServerExecute
Set postfire to false.
postfire() - Method in class org.geon.StringToPolygon
Post fire the actor.
postfire() - Method in class org.geon.SVGToPolygon
Post fire the actor.
postfire() - Method in class org.geon.TempActor
Set postfire to false.
postfire() - Method in class org.kepler.data.conversion.binary.EnsembleActor
 
postfire() - Method in class org.kepler.dataproxy.datasource.geon.GEONShpResource
postfire the actor.
postfire() - Method in class org.kepler.dataproxy.datasource.opendap.OpendapDataSourceODC
 
postfire() - Method in class org.kepler.ddp.actor.pattern.stub.StubSourceActor
Returns true if the actor should execute again.
postfire() - Method in class org.kepler.ddp.director.DDPDirector
Postfire the engine.
postfire() - Method in class org.kepler.ddp.director.DDPEngine
Postfire the engine.
postfire() - Method in class org.kepler.hadoop.actor.HDFSLoader
Load local files from input port to HDFS.
postfire() - Method in class org.kepler.hadoop.actor.HDFSRemover
Parse input paths and delete them one by one.
postfire() - Method in class org.kepler.hadoop.actor.HDFSUnLoader
Load HDFS files from input port to local file system.
postfire() - Method in class org.kepler.hadoop.actor.HDFSWriter
Read an input string token from each input channel and write it to the file, one line per token.
postfire() - Method in class org.kepler.hadoop.director.HadoopEngine
 
postfire() - Method in class org.kepler.scriptengine.ScriptEngineActor
Invoke the postfire() method in the script.
postfire() - Method in class org.kepler.spark.actor.SaveableModelActor
Check if the model path already exists.
postfire() - Method in class org.resurgence.actor.BooleanAccumulator
Post fire the actor.
postfire() - Method in class org.resurgence.actor.FileArrayPrinter
Post fire the actor.
postfire() - Method in class org.resurgence.actor.TokenCounter
Post fire the actor.
postfire() - Method in class org.ROADnet.QAQC
Post fire the actor.
postfire() - Method in class org.sdm.spa.BrowserUI
Post fire the actor.
postfire() - Method in class org.sdm.spa.CreateExpressionFromQuery
Post fire the actor.
postfire() - Method in class org.sdm.spa.CreateRequestFromResult
Post fire the actor.
postfire() - Method in class org.sdm.spa.Email
Post fire the actor.
postfire() - Method in class org.sdm.spa.EnumItemTriggered
Post fire the actor.
postfire() - Method in class org.sdm.spa.gui.UserInteractiveShell
Override the base class to return false if the user has typed "quit" or "exit".
postfire() - Method in class org.sdm.spa.Pause
If we read a true token, then pause the Manager until the user presses a button.
postfire() - Method in class org.sdm.spa.Repeat
Deprecated.
Post fire the actor.
postfire() - Method in class org.sdm.spa.TextualInteractionShell
Override the base class to return false if the user has typed "quit" or "exit".
postfire() - Method in class org.sdm.spa.Timestamp
Post fire the actor.
postfire() - Method in class org.sdm.spa.WSWithComplexTypes
Returns false unless there are connected input ports.
postfire() - Method in class org.skidlkit.TextFileReader
Post fire the actor.
postfire() - Method in class org.srb.DataGridTransfer
Post fire the actor.
postfire() - Method in class org.srb.SGet
Post fire the actor.
postfire() - Method in class org.srb.SRBDisconnect
Post fire the actor.
postfire() - Method in class org.srb.SRBReader
Post fire the actor.
postfire() - Method in class org.srb.SRBWriter
Post fire the actor.
postfire() - Method in class ptolemy.actor.AtomicActor
Return true, unless stop() has been called, in which case, return false.
postfire() - Method in class ptolemy.actor.CompositeActor
If this actor is opaque, invoke the postfire() method of its local director and transfer output data.
postfire() - Method in class ptolemy.actor.Director
Return true if the director wishes to be scheduled for another iteration.
postfire() - Method in class ptolemy.actor.DoNothingDirector
 
postfire() - Method in interface ptolemy.actor.Executable
This method should be invoked once per iteration, after the last invocation of fire() in that iteration.
postfire() - Method in class ptolemy.actor.lib.Accumulator
Record the most recent input as part of the running average.
postfire() - Method in class ptolemy.actor.lib.ArrayAccumulate
Record the accumulating array and return true.
postfire() - Method in class ptolemy.actor.lib.Average
Record the most recent input as part of the running average.
postfire() - Method in class ptolemy.actor.lib.BooleanSelect
Return true, unless stop() has been called, in which case, return false.
postfire() - Method in class ptolemy.actor.lib.Clock
Deprecated.
Update the state of the actor and schedule the next firing, if appropriate.
postfire() - Method in class ptolemy.actor.lib.comm.ConvolutionalCoder
Record the most recent shift register state as the new state for the next iteration.
postfire() - Method in class ptolemy.actor.lib.comm.DeScrambler
Record the most recent shift register state as the new initial state for the next iteration.
postfire() - Method in class ptolemy.actor.lib.comm.HadamardCode
 
postfire() - Method in class ptolemy.actor.lib.comm.Scrambler
Record the most recent shift register state as the new initial state for the next iteration.
postfire() - Method in class ptolemy.actor.lib.comm.ViterbiDecoder
Record the datum in buffers into their temporary versions.
postfire() - Method in class ptolemy.actor.lib.Commutator
Update the input position to equal that determined by the most recent invocation of the fire() method.
postfire() - Method in class ptolemy.actor.lib.Counter
Record the most recent output count as the actual count.
postfire() - Method in class ptolemy.actor.lib.Differential
Record the most recent input as the latest input.
postfire() - Method in class ptolemy.actor.lib.DiscreteClock
Update the time and index of the next expected output.
postfire() - Method in class ptolemy.actor.lib.Distributor
Update the output position to equal that determined by the most recent invocation of the fire() method.
postfire() - Method in class ptolemy.actor.lib.Expression
Increment the iteration count.
postfire() - Method in class ptolemy.actor.lib.FileWriter
Read at most one token from each input channel and write its string value.
postfire() - Method in class ptolemy.actor.lib.gem5.Gem5Wrapper
Update the state of the actor by adding the value of the step parameter to the state.
postfire() - Method in class ptolemy.actor.lib.GradientAdaptiveLattice
Update the filter state.
postfire() - Method in class ptolemy.actor.lib.gui.ArrayPlotter
Read at most one token from each input channel and plot it as a function of the iteration number, scaled by xUnit.
postfire() - Method in class ptolemy.actor.lib.gui.ArrayPlotterXY
Read at most one token from each input channel on x and y inputs, and if there is a token on both, plot the data as an XY plot.
postfire() - Method in class ptolemy.actor.lib.gui.Display
Read at most one token from each input channel and display its string value on the screen.
postfire() - Method in class ptolemy.actor.lib.gui.HistogramPlotter
Read at most one input token from each input channel and update the histogram.
postfire() - Method in class ptolemy.actor.lib.gui.InteractiveShell
Override the base class to return false if the user has typed "quit" or "exit".
postfire() - Method in class ptolemy.actor.lib.gui.MatrixViewer
Consume a matrix token from the input port and display the token in a table.
postfire() - Method in class ptolemy.actor.lib.gui.MonitorValue
Read at most one token from the input and record its value.
postfire() - Method in class ptolemy.actor.lib.gui.RealTimePlotter
Read at most one input from each channel and plot it as a function of time.
postfire() - Method in class ptolemy.actor.lib.gui.SequencePlotter
Read at most one token from each input channel and plot it as a function of the iteration number, scaled by xUnit.
postfire() - Method in class ptolemy.actor.lib.gui.SequenceScope
Call the base class postfire() method, then yield this thread so that the event thread gets a chance.
postfire() - Method in class ptolemy.actor.lib.gui.TimedPlotter
Read at most one input from each channel and plot it as a function of time.
postfire() - Method in class ptolemy.actor.lib.gui.TimedScope
Call the base class postfire() method, then yield this thread so that the event thread gets a chance.
postfire() - Method in class ptolemy.actor.lib.gui.XYPlotter
Read at most one token from each channel of each input port and plot it.
postfire() - Method in class ptolemy.actor.lib.gui.XYScope
Call the base class postfire() method, then yield this thread so that the event thread gets a chance.
postfire() - Method in class ptolemy.actor.lib.hoc.ApplyFilterOverArray
Remove this class from the manager's list of execution listeners.
postfire() - Method in class ptolemy.actor.lib.hoc.CaseDirector
Invoke the postfire() method of the current local director.
postfire() - Method in class ptolemy.actor.lib.hoc.ExecuteCompositeActor
Return true, indicating that execution can continue.
postfire() - Method in class ptolemy.actor.lib.hoc.MobileModel
Update the model here to achieve consistency.
postfire() - Method in class ptolemy.actor.lib.hoc.ModelReference
Override the base class to perform requested postfire actions.
postfire() - Method in class ptolemy.actor.lib.hoc.RunCompositeActor
Return true, indicating that execution can continue.
POSTFIRE - Static variable in class ptolemy.actor.lib.hoc.ThreadedComposite.TokenFrame
POSTFIRE is a frame indicating that the inside actor can be postfired.
postfire() - Method in class ptolemy.actor.lib.IIR
Update the filter state.
postfire() - Method in class ptolemy.actor.lib.image.ImageDisplay
Consume a token from the input port and display the token as an image.
postfire() - Method in class ptolemy.actor.lib.Interpolator
Update the iteration counter, then call the super class method.
postfire() - Method in class ptolemy.actor.lib.io.LineReader
Read the next line from the file.
postfire() - Method in class ptolemy.actor.lib.io.LineWriter
Read an input string token from each input channel and write it to the file, one line per token.
postfire() - Method in class ptolemy.actor.lib.Lattice
Update the backward and forward prediction errors that were generated in fire() method.
postfire() - Method in class ptolemy.actor.lib.LimitedFiringSource
Increment the iteration counter, and if it equals the value of the firingCountLimit parameter, return false.
postfire() - Method in class ptolemy.actor.lib.LinearDifferenceEquationSystem
Update the internal state.
postfire() - Method in class ptolemy.actor.lib.MicrostepDelay
Read the input, if there is one, and request refiring.
postfire() - Method in class ptolemy.actor.lib.MovingMaximum
Deprecated.
Commit the maximum value observed since the start of execution to the maximum field to be compared with later inputs.
postfire() - Method in class ptolemy.actor.lib.NonStrictTest
Read one token from each input channel and compare against the value specified in correctValues.
postfire() - Method in class ptolemy.actor.lib.OrderedMerge
Commit the recorded token.
postfire() - Method in class ptolemy.actor.lib.Pause
Read one token from each input channel that has a token, and if any token is true, call pause() on the manager.
postfire() - Method in class ptolemy.actor.lib.PhaseUnwrap
Record the final value of the most recent value of the input, for use in the next phase.
postfire() - Method in class ptolemy.actor.lib.PoissonClock
Generate an exponential random number and schedule the next firing.
postfire() - Method in class ptolemy.actor.lib.PublisherNonStrictTest
Read one token from each input channel and compare against the value specified in correctValues.
postfire() - Method in class ptolemy.actor.lib.PublisherTest
Override the base class to do nothing and return true.
postfire() - Method in class ptolemy.actor.lib.Pulse
Update the iteration counters until they exceed the values in the indexes array.
postfire() - Method in class ptolemy.actor.lib.python.PythonScript
Invoke the postfire() method if defined in the script.
postfire() - Method in class ptolemy.actor.lib.r.RExpression
 
postfire() - Method in class ptolemy.actor.lib.Ramp
Update the state of the actor by adding the value of the step parameter to the state.
postfire() - Method in class ptolemy.actor.lib.RandomSource
Calculate the next random number.
postfire() - Method in class ptolemy.actor.lib.Recorder
Read at most one token from each input channel and record its value.
postfire() - Method in class ptolemy.actor.lib.RecursiveLattice
Update the backward and forward prediction errors that were generated in fire() method.
postfire() - Method in class ptolemy.actor.lib.ResettableTimer
Read the input (if any) and schedule a future output.
postfire() - Method in class ptolemy.actor.lib.RunningMaximum
Commit the maximum value observed since the start of execution to the maximum field to be compared with later inputs.
postfire() - Method in class ptolemy.actor.lib.RunningMinimum
Commit the minimum value observed since the start of execution to the minimum field to be compared with later inputs.
postfire() - Method in class ptolemy.actor.lib.Sequence
Update the state of the actor by moving to the next value in the values array.
postfire() - Method in class ptolemy.actor.lib.Sequencer
If the fire() method produced the input token then check to whether any pending tokens have subsequent sequence numbers.
postfire() - Method in class ptolemy.actor.lib.SequentialClock
Deprecated.
Update the state of the actor and schedule the next firing, if appropriate.
postfire() - Method in class ptolemy.actor.lib.SetVariable
Read at most one token from the input port and issue a change request to update variables as indicated by the input.
postfire() - Method in class ptolemy.actor.lib.SingleTokenCommutator
Update the input position to equal that determined by the most recent invocation of the fire() method.
postfire() - Method in class ptolemy.actor.lib.Sleep
Reset the flag that fire() checks so that fire() only sleeps once.
postfire() - Method in class ptolemy.actor.lib.Stop
Read one token from each input channel that has a token, and if any token is true, call finish() on the manager.
postfire() - Method in class ptolemy.actor.lib.test.LoopTest2
Post fire the actor.
postfire() - Method in class ptolemy.actor.lib.Test
Override the base class to do nothing and return true.
postfire() - Method in class ptolemy.actor.lib.test.SearchTest
Post fire the actor.
postfire() - Method in class ptolemy.actor.lib.ThrowException
Read one token from each input channel that has a token, and if any token is true, throw an exception.
postfire() - Method in class ptolemy.actor.lib.ThrowModelError
Read one token from each input channel that has a token, and if any token is true, invoke the model error handler.
postfire() - Method in class ptolemy.actor.lib.TimeDelay
Read the input, if there is one, and request refiring.
postfire() - Method in class ptolemy.actor.lib.TimedSource
Return false if the current time is greater than or equal to the stopTime parameter value.
postfire() - Method in class ptolemy.actor.lib.URLDirectoryReader
Deprecated.
Update the iteration counter until it exceeds the number of elements in the directory.
postfire() - Method in class ptolemy.actor.lib.VariableSleep
Reset the flag that fire() checks so that fire() only sleeps once.
postfire() - Method in class ptolemy.actor.lib.Writer
Deprecated.
Read at most one token from each input channel and write its string value.
postfire() - Method in class ptolemy.actor.parameters.ParameterSet
Do nothing.
postfire() - Method in class ptolemy.actor.process.ProcessDirector
Return false if a stop has been requested or if the model has reached deadlock.
postfire() - Method in class ptolemy.actor.process.test.ProcessSink
 
postfire() - Method in class ptolemy.actor.process.test.TestProcessActor
Record the invocation, then return true if fire was never called.
postfire() - Method in class ptolemy.actor.process.test.TypedTestProcessActor
Record the invocation, then return true if fire was never called.
postfire() - Method in class ptolemy.actor.sched.FixedPointDirector
Call postfire() on all contained actors that were fired in the current iteration.
postfire() - Method in class ptolemy.actor.sched.StaticSchedulingDirector
Return true if the director wishes to be scheduled for another iteration.
postfire() - Method in class ptolemy.actor.test.TestActor
Record the invocation, then return true.
postfire() - Method in class ptolemy.actor.test.TypedTestActor
Record the invocation, then return true.
postfire() - Method in class ptolemy.actor.util.PeriodicDirectorHelper
If the period parameter is greater than 0.0, then if the associated director is at the top level, then increment its time by the specified period, and otherwise request a refiring at the current time plus the period.
postfire() - Method in class ptolemy.domains.continuous.kernel.ContinuousDirector
If this director is not at the top level and the breakpoint table is not empty, request a refiring at the first breakpoint or at the local current time (iteration start time plus the step size), whichever is less.
postfire() - Method in class ptolemy.domains.continuous.kernel.ContinuousIntegrator
Update the state.
postfire() - Method in class ptolemy.domains.continuous.kernel.HybridModalDirector
Override the base class so that if there is no enabled transition then we record for each comparison operation in each guard expression the distance between the current value of the variable being compared and the threshold.
postfire() - Method in class ptolemy.domains.continuous.kernel.Noise
Set a flag to cause a new random number to be generated the next time fire() is called.
postfire() - Method in class ptolemy.domains.continuous.lib.BandlimitedNoise
If we are at the end of the current interval, then generate a new random number for the new interval, and request a refiring at the end of that interval.
postfire() - Method in class ptolemy.domains.continuous.lib.ContinuousMerge
If there are any pending outputs, then request a refiring at the current time.
postfire() - Method in class ptolemy.domains.continuous.lib.ContinuousTimeDelay
Schedule the next output event.
postfire() - Method in class ptolemy.domains.continuous.lib.Derivative
Record the current input and time.
postfire() - Method in class ptolemy.domains.continuous.lib.EventSource
Deprecated.
Update the state of the actor and schedule the next firing, if the director is in the discrete phase.
postfire() - Method in class ptolemy.domains.continuous.lib.LevelCrossingDetector
Prepare for the next iteration, by making the current trigger token to be the history trigger token.
postfire() - Method in class ptolemy.domains.continuous.lib.LinearStateSpace
Request the reinitialization.
postfire() - Method in class ptolemy.domains.continuous.lib.PeriodicSampler
If the current microstep is zero, sample the inputs and request a refiring at the current time.
postfire() - Method in class ptolemy.domains.continuous.lib.ZeroOrderHold
Override the base class to record that the first firing has completed.
postfire() - Method in class ptolemy.domains.ddf.kernel.DDFDirector
Increment the number of iterations.
postfire() - Method in class ptolemy.domains.ddf.lib.ActorRecursion
Override the base class to return false.
postfire() - Method in class ptolemy.domains.ddf.lib.DDFBooleanSelect
Update rate parameters for the next iteration.
postfire() - Method in class ptolemy.domains.ddf.lib.DDFSelect
Update rate parameters for the next iteration.
postfire() - Method in class ptolemy.domains.ddf.lib.DDFSingleTokenCommutator
Update rate parameter indicating the next input channel.
postfire() - Method in class ptolemy.domains.de.kernel.DEDirector
Return false if there are no more actors to be fired or the stop() method has been called.
postfire() - Method in class ptolemy.domains.de.lib.AverageOverTime
 
postfire() - Method in class ptolemy.domains.de.lib.Derivative
Record the most recent input as the latest input.
postfire() - Method in class ptolemy.domains.de.lib.EventButton
Deprecated.
Reset the state of the actor and return whatever the superclass returns.
postfire() - Method in class ptolemy.domains.de.lib.Integrator
Record the most recent input as the latest input.
postfire() - Method in class ptolemy.domains.de.lib.NonInterruptibleTimer
Deprecated.
If there are delayed inputs that are not processed and the timer is not busy, begin processing the earliest input and schedule a future firing to produce it.
postfire() - Method in class ptolemy.domains.de.lib.PID
Record the most recent input as the latest input.
postfire() - Method in class ptolemy.domains.de.lib.Previous
Update the state of the actor.
postfire() - Method in class ptolemy.domains.de.lib.Queue
Commit additions or removals from the queue.
postfire() - Method in class ptolemy.domains.de.lib.Register
Read and record the inputs.
postfire() - Method in class ptolemy.domains.de.lib.Server
If the server is free and there is at least one token in the queue, request a firing at the current time plus the service time.
postfire() - Method in class ptolemy.domains.de.lib.TimedDelay
Deprecated.
Process the current input if it has not been processed.
postfire() - Method in class ptolemy.domains.de.lib.TimeGap
Record the time when the current input arrives.
postfire() - Method in class ptolemy.domains.de.lib.Timer
Deprecated.
Update the internal states of this actor.
postfire() - Method in class ptolemy.domains.de.lib.VariableDelay
Deprecated.
Process the current input if it has not been processed.
postfire() - Method in class ptolemy.domains.de.test.SuperdenseTimeTest
Read the inputs and sum them.
postfire() - Method in class ptolemy.domains.modal.kernel.FSMActor
Execute actions on the last chosen transition.
postfire() - Method in class ptolemy.domains.modal.kernel.FSMDirector
Invoke postfire() on any state refinements that were fired, then execute the commit actions contained by the last chosen transition, if any, and finally set the current state to the destination state of the transition.
postfire() - Method in class ptolemy.domains.modal.kernel.MultirateFSMDirector
Postfire the modal model and commit the transition.
postfire() - Method in class ptolemy.domains.modal.kernel.NonStrictFSMDirector
Call the postfire() method of the super class.
postfire() - Method in class ptolemy.domains.modal.kernel.test.ZeroOneSource
Increment the iteration counter, and if it equals the value of the firingCountLimit parameter, return false.
postfire() - Method in class ptolemy.domains.pn.demo.QR.ND_1
Post fire the actor.
postfire() - Method in class ptolemy.domains.pn.demo.QR.ND_2
Post fire the actor.
postfire() - Method in class ptolemy.domains.pn.demo.QR.ND_3
Post fire the actor.
postfire() - Method in class ptolemy.domains.pn.demo.QR.ND_4
Post fire the actor.
postfire() - Method in class ptolemy.domains.pn.demo.QR.ND_5
Post fire the actor.
postfire() - Method in class ptolemy.domains.pn.kernel.PNDirector
Return true if the containing composite actor contains active processes and the composite actor has input ports and if stop() has not been called.
postfire() - Method in class ptolemy.domains.pn.kernel.test.TestDirector
 
postfire() - Method in class ptolemy.domains.sdf.kernel.SDFDirector
Return false if the system has finished executing, either by reaching the iteration limit, or having an actor in the system return false in postfire.
postfire() - Method in class ptolemy.domains.sdf.kernel.test.SDFTestDelay
This method should be invoked once per iteration, after the last invocation of fire() in that iteration.
postfire() - Method in class ptolemy.domains.sdf.optimize.lib.DummySource
Post-fire the source actor and update the counter to give next token a unique sequence number.
postfire() - Method in class ptolemy.matlab.Expression
Increment the iteration count.
postfire() - Method in class ptolemy.vergil.actor.lib.MonitorImage
Read at most one token from the input and record its value.
postfire() - Method in class ptolemy.vergil.actor.lib.VisualModelReference
Override the base class to perform requested close on postfire actions.
postfireAction - Variable in class ptolemy.actor.lib.hoc.ModelReference
The value of this string attribute determines what happens in the postfire() method.
PostgreSQL - Class in org.kepler.util.sql
An implementation of DatabaseType for PostgreSQL.
PostgreSQL() - Constructor for class org.kepler.util.sql.PostgreSQL
Only this package (DatabaseFactory) can instantiate.
postpone - Variable in class org.kepler.actor.ssh.SshSession
Specifying whether actual connection to the host should be postponed until the first usage somewhere in the workflow.
pow(int) - Method in class ptolemy.data.Token
Return a new token computed as follows:
For positive times arguments, the result represents the product of this token multiplied by itself the number of times given by the argument.
pow(double) - Method in class ptolemy.math.Complex
Return a new complex number with value z y where z is this complex number and y is the argument, a double.
pow(Complex, double) - Static method in class ptolemy.math.Complex
Return a new complex number with value z y where z is the first argument and y is the second argument.
pow(Complex) - Method in class ptolemy.math.Complex
Return zy where z is this complex number and y is the argument, a Complex.
pow(Complex, Complex) - Static method in class ptolemy.math.Complex
Return a new complex number with value z y where z is the first argument and y is the second argument.
pow(double, Complex) - Static method in class ptolemy.math.Complex
Return a new complex number with value z y where z is the first argument and y is the second argument.
pow(Complex[], double) - Static method in class ptolemy.math.ComplexArrayMath
Return a new array of complex numbers that is formed by raising each element to the specified exponent, a double.
pow(double) - Method in class ptolemy.moml.unit.Unit
Returns of value of this Unit raised to the power of the argument.
power() - Method in class ptolemy.data.expr.PtParser
 
POWER - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
POWER - Static variable in interface ptolemy.moml.unit.UParserConstants
RegularExpression Id.
precision - Variable in class ptolemy.actor.lib.conversions.DoubleToFix
The precision of the output fixed-point number, which is represented by a 2-element integer matrix.
precision - Variable in class ptolemy.actor.lib.conversions.FixToFix
The precision of the output fix-point number, represented by an integer matrix.
precision - Variable in class ptolemy.actor.lib.DateConstructor
The precision of the date.
precision - Variable in class ptolemy.actor.parameters.DoubleRangeParameter
The precision, which is the number of possible values.
Precision - Class in ptolemy.math
This class defines the precision of a signed or unsigned fixed point value.
Precision(String) - Constructor for class ptolemy.math.Precision
Construct a Precision object based on the provided string.
Precision(int, int) - Constructor for class ptolemy.math.Precision
Construct a Precision object based on the length/integer bits format.
Precision(int, int, int) - Constructor for class ptolemy.math.Precision
Construct a Precision object based on the sign, length, and exponent format.
Precision.ExpressionLanguagePrecisionFormat - Class in ptolemy.math
Precision format for use with the Expression Language.
Precision.IntegerFractionPrecisionFormat - Class in ptolemy.math
Defines a Precision string format using the INTEGER.FRACTION precision format.
Precision.LengthExponentPrecisionFormat - Class in ptolemy.math
Defines a Precision string format using the LENGTHeEXPONENT precision format.
Precision.LengthIntegerPrecisionFormat - Class in ptolemy.math
Defines a Precision string format using the LENGTH/INTEGER precision format.
Precision.PrecisionFormat - Class in ptolemy.math
Defines a String format for specifying a Precision object.
Precision.VHDLPrecisionFormat - Class in ptolemy.math
Defines a Precision string format using the VHDL MSB:LSB precision format.
PRECISION_MICROSECOND - Static variable in class ptolemy.data.DateToken
The flag indicating that the the precision is microseconds.
PRECISION_MILLISECOND - Static variable in class ptolemy.data.DateToken
The flag indicating that the the precision is milliseconds.
PRECISION_NANOSECOND - Static variable in class ptolemy.data.DateToken
The flag indicating that the the precision is nanoseconds.
PRECISION_SECOND - Static variable in class ptolemy.data.DateToken
The flag indicating that the the precision is seconds.
PrecisionFormat() - Constructor for class ptolemy.math.Precision.PrecisionFormat
 
predecessorEdges(Node, Node) - Method in class ptolemy.graph.DirectedGraph
Return the collection of edges that make a node n2 a predecessor of a node n1.
predecessors(Node) - Method in class ptolemy.graph.DirectedGraph
Return all of the predecessors of a given node in the form of a a collection.
preemptive - Variable in class ptolemy.actor.lib.ResettableTimer
Indicator of whether new inputs cancel previous requests.
preemptive - Variable in class ptolemy.domains.modal.kernel.Transition
Parameter specifying whether this transition is preemptive.
preemptiveTransitionList() - Method in class ptolemy.domains.modal.kernel.State
Return the list of preemptive outgoing transitions from this state.
PREF_COLSPEC - Static variable in class com.jgoodies.forms.factories.FormFactory
An unmodifyable ColumnSpec that determines its width by computing the maximum of all column component preferred widths.
PREF_ROWSPEC - Static variable in class com.jgoodies.forms.factories.FormFactory
An unmodifyable RowSpec that determines its height by computing the maximum of all column component preferred heights.
PREFERENCES_DIRECTORY - Static variable in class ptolemy.util.StringUtilities
Location of Application preferences such as the user library.
PREFERENCES_FILE_NAME - Static variable in class ptolemy.actor.gui.PtolemyPreferences
The file name where user-defined preferences are stored.
PREFERENCES_WITHIN_CONFIGURATION - Static variable in class ptolemy.actor.gui.PtolemyPreferences
The location with the configuration of the preferences attribute.
PreferencesAction - Class in org.kepler.gui
Adding a new PreferencesAction to a component will open up the preferences frame to the desired preferences tab.
PreferencesAction(String) - Constructor for class org.kepler.gui.PreferencesAction
 
PreferencesAction(TableauFrame) - Constructor for class org.kepler.gui.PreferencesAction
 
preferencesDirectory() - Static method in class ptolemy.util.StringUtilities
Return the preferences directory, creating it if necessary.
PreferencesFrame - Class in org.kepler.gui
This frame allows a common place for modules to set preferences.
PreferencesFrame(String, TableauFrame) - Constructor for class org.kepler.gui.PreferencesFrame
Constructor accepts a title for the frame and the parent of the frame.
PreferencesFrame(String, TableauFrame, String) - Constructor for class org.kepler.gui.PreferencesFrame
Constructor accepts a title for the frame, the parent of the frame, and the tab to display after opening the preferencesFrame
PreferencesFrameTracker - Class in org.kepler.gui
A singleton class to keep track of whether or not the PreferencesFrame is currently open or not.
PreferencesFrameTracker() - Constructor for class org.kepler.gui.PreferencesFrameTracker
 
PreferencesTab - Interface in org.kepler.gui
This interface is to be implemented by anyone wanting to add a tab to the PreferencesFrame.
PreferencesTabFactory - Class in org.kepler.gui
This class is an attribute that creates a LibraryPaneTab for the TabbedLibraryPane.
PreferencesTabFactory(NamedObj, String) - Constructor for class org.kepler.gui.PreferencesTabFactory
Create a factory with the given name and container.
preferenceValue(NamedObj, String) - Static method in class ptolemy.actor.gui.PtolemyPreferences
Check to see whether a preference of the specified name is defined in the specified context, and if it is, return its value.
preferenceValue(NamedObj, String) - Static method in class ptolemy.data.expr.ModelScope
Check to see whether a preference of the specified name is defined in the specified context, and if it is, return its value.
preferenceValueLocal(NamedObj, String) - Static method in class ptolemy.actor.gui.PtolemyPreferences
Check to see whether a preference of the specified name is defined in the container of the specified context, either directly or within an instance of PtolemyPreferences, or globally, and if it is, return it's value.
PREFERRED - Static variable in class com.jgoodies.forms.layout.Sizes
Use the maximum of all component preferred sizes as column or row size.
preferred - Variable in class ptolemy.actor.lib.Default
The preferred input port.
PREFERRED_HEIGHT - Static variable in class org.kepler.sms.gui.SemanticTypeBrowserPane
 
PREFERRED_WIDTH - Static variable in class org.kepler.sms.gui.SemanticTypeBrowserPane
 
preferredBackgroundColor(Object) - Static method in class ptolemy.actor.gui.PtolemyQuery
Return the preferred background color for editing the specified object.
preferredForegroundColor(Object) - Static method in class ptolemy.actor.gui.PtolemyQuery
Return the preferred foreground color for editing the specified object.
preferredLayoutSize(Container) - Method in class com.jgoodies.forms.layout.FormLayout
Determines the preferred size of the parent container using this form layout.
preferredLayoutSize(Container) - Method in class org.mlc.swing.layout.ContainerLayout
 
preferredSize - Variable in class ptolemy.actor.gui.properties.GUIProperty
The preferred size of the Swing component.
prefire() - Method in class com.numericsolutions.geomodeltools.DensityGridActor
 
prefire() - Method in class org.ecoinformatics.seek.backprop.BackProp
 
prefire() - Method in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreDataSource
 
prefire() - Method in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource
 
prefire() - Method in class org.ecoinformatics.seek.ecogrid.EcogridWriter
 
prefire() - Method in class org.ecoinformatics.seek.garp.GarpAlgorithm
 
prefire() - Method in class org.ecoinformatics.seek.garp.GarpPrediction
 
prefire() - Method in class org.ecoinformatics.seek.garp.GarpPresampleLayers
 
prefire() - Method in class org.ecoinformatics.seek.gis.gdal.GDALTranslateActor
Prefire
prefire() - Method in class org.ecoinformatics.seek.gis.gdal.GDALWarpActor
Prefire
prefire() - Method in class org.ecoinformatics.seek.gis.grass.GISBufferActor
 
prefire() - Method in class org.ecoinformatics.seek.gis.grass.GISHullActor
 
prefire() - Method in class org.ecoinformatics.seek.gis.grass.GISRasterActor
 
prefire() - Method in class org.ecoinformatics.seek.gis.grass.GrassExportActor
 
prefire() - Method in class org.ecoinformatics.seek.gis.grass.GrassImportActor
 
prefire() - Method in class org.ecoinformatics.seek.gis.java_gis.AddGrids
 
prefire() - Method in class org.ecoinformatics.seek.gis.java_gis.CVHull2Raster
 
prefire() - Method in class org.ecoinformatics.seek.gis.java_gis.GARPSummary
Pre fire the actor.
prefire() - Method in class org.ecoinformatics.seek.gis.java_gis.GISHullActorJ
 
prefire() - Method in class org.ecoinformatics.seek.gis.java_gis.GridRescaler
Pre fire the actor.
prefire() - Method in class org.ecoinformatics.seek.gis.java_gis.GridReset
Pre fire the actor.
prefire() - Method in class org.ecoinformatics.seek.gis.java_gis.MergeGrids
 
prefire() - Method in class org.ecoinformatics.seek.util.FieldChooser
 
prefire() - Method in class org.ecoinformatics.seek.util.SequenceToTrigger
Return true if the input port has enough tokens for this actor to fire.
prefire() - Method in class org.eol.WmsdActor
 
prefire() - Method in class org.geon.BinaryFileReader
If this method is called after wrapup() has been called, then open the file, and read the first chunk of bytes Return false if there is no more data available in the file.
prefire() - Method in class org.geon.GridOverlay
 
prefire() - Method in class org.geon.Interpolate
 
prefire() - Method in class org.kepler.dataproxy.datasource.opendap.OpendapDataSourceODC
 
prefire() - Method in class org.kepler.ddp.actor.ExecutionChoiceDirector
Read the control token input, transfer input tokens, and invoke prefire() of the selected refinement.
prefire() - Method in class org.kepler.ddp.actor.pattern.AtomicPathActor
Update the path parameter.
prefire() - Method in class org.kepler.ddp.actor.pattern.DDPDataSink
Update the path parameter if connected.
prefire() - Method in class org.kepler.gis.display.ENMPCPVisualizer
 
prefire() - Method in class org.kepler.gis.display.JumpGMLDisplayer
 
prefire() - Method in class org.kepler.gis.display.JumpSHPDisplayer
 
prefire() - Method in class org.kepler.objectmanager.cache.DataCacheGetActor
 
prefire() - Method in class org.kepler.objectmanager.cache.DataCachePutActor
 
prefire() - Method in class org.kepler.scriptengine.ScriptEngineActor
Invoke the prefire() method in the script.
prefire() - Method in class org.resurgence.actor.BooleanAccumulator
Prefire the actor.
prefire() - Method in class org.ROADnet.ObjectToRecord
 
prefire() - Method in class org.ROADnet.OrbWaveformSink
 
prefire() - Method in class org.ROADnet.RecordToObject
 
prefire() - Method in class org.sdm.spa.CreateExpressionFromQuery
Pre fire the actor.
prefire() - Method in class org.sdm.spa.CreateRequestFromResult
Pre fire the actor.
prefire() - Method in class org.sdm.spa.MessageBasedWebService
Deprecated.
Pre fire the actor.
prefire() - Method in class org.sdm.spa.SoaplabChooseOperation
Before executing the actor, delete any unconnected input ports to the actor done in order to prevent possible SDF disconnected graphs problem for users.
prefire() - Method in class org.sdm.spa.SoaplabServiceStarter
Before executing the actor, delete any unconnected input ports to the actor done in order to prevent possible SDF disconnected graphs problem for users.
prefire() - Method in class ptolemy.actor.AtomicActor
Return true.
prefire() - Method in class ptolemy.actor.CompositeActor
If this actor is opaque, invoke the prefire() method of the local director.
prefire() - Method in class ptolemy.actor.Director
Return true if the director is ready to fire.
prefire() - Method in class ptolemy.actor.DoNothingDirector
 
prefire() - Method in interface ptolemy.actor.Executable
This method should be invoked prior to each invocation of fire().
prefire() - Method in class ptolemy.actor.lib.BooleanSelect
If the mode is to read a control token, then return true if the control input has a token.
prefire() - Method in class ptolemy.actor.lib.Clock
Deprecated.
Check that the length of the values and offsets parameters are the same.
prefire() - Method in class ptolemy.actor.lib.Commutator
Return false if the current input position does not have an input token.
prefire() - Method in class ptolemy.actor.lib.ComputeHistogram
Return false if the input does not have enough tokens to fire.
prefire() - Method in class ptolemy.actor.lib.ConfigurationSelect
Return false if there are not available tokens on the input port chosen by the current value of the selector.
prefire() - Method in class ptolemy.actor.lib.conversions.AnythingToDouble
Deprecated.
Return false if the input port has no token, otherwise return what the superclass returns (presumably true).
prefire() - Method in class ptolemy.actor.lib.conversions.BooleanToAnything
Return false if the input port has no token, otherwise return what the superclass returns (presumably true).
prefire() - Method in class ptolemy.actor.lib.conversions.CartesianToComplex
Return false if either of the input ports has no token, otherwise return what the superclass returns (presumably true).
prefire() - Method in class ptolemy.actor.lib.conversions.CartesianToPolar
Return false if either of the input ports has no token, otherwise return what the superclass returns (presumably true).
prefire() - Method in class ptolemy.actor.lib.conversions.ComplexToCartesian
Return false if the input port has no token, otherwise return what the superclass returns (presumably true).
prefire() - Method in class ptolemy.actor.lib.conversions.ComplexToPolar
Return false if the input port has no token, otherwise return what the superclass returns (presumably true).
prefire() - Method in class ptolemy.actor.lib.conversions.DateToString
Return false if the input port has no token, otherwise return what the superclass returns (presumably true).
prefire() - Method in class ptolemy.actor.lib.conversions.DoubleToFix
Return false if the input port has no token, otherwise return what the superclass returns (presumably true).
prefire() - Method in class ptolemy.actor.lib.conversions.ExpressionToToken
Return true if and only if an input is present.
prefire() - Method in class ptolemy.actor.lib.conversions.FixToDouble
Return false if the input port has no token, otherwise return what the superclass returns (presumably true).
prefire() - Method in class ptolemy.actor.lib.conversions.FixToFix
Return false if the input port has no token, otherwise return what the superclass returns (presumably true).
prefire() - Method in class ptolemy.actor.lib.conversions.ImageToString
Return false if the input port has no token, otherwise return what the superclass returns (presumably true).
prefire() - Method in class ptolemy.actor.lib.conversions.IntArrayToString
Return false if the input port has no token, otherwise return what the superclass returns (presumably true).
prefire() - Method in class ptolemy.actor.lib.conversions.InUnitsOf
Return false if the input port has no token, otherwise return what the superclass returns (presumably true).
prefire() - Method in class ptolemy.actor.lib.conversions.json.JSONToToken
Return false if the input port has no token, otherwise return what the superclass returns (presumably true).
prefire() - Method in class ptolemy.actor.lib.conversions.json.TokenToJSON
Return false if the input port has no token, otherwise return what the superclass returns (presumably true).
prefire() - Method in class ptolemy.actor.lib.conversions.LongToDate
Return false if the input port has no token, otherwise return what the superclass returns (presumably true).
prefire() - Method in class ptolemy.actor.lib.conversions.LongToDouble
Return false if the input port has no token, otherwise return what the superclass returns (presumably true).
prefire() - Method in class ptolemy.actor.lib.conversions.PolarToCartesian
Return false if either of the input ports has no token, otherwise return what the superclass returns (presumably true).
prefire() - Method in class ptolemy.actor.lib.conversions.PolarToComplex
Return false if either of the input ports has no token, otherwise return what the superclass returns (presumably true).
prefire() - Method in class ptolemy.actor.lib.conversions.Round
Return false if there is no available input token, and otherwise return whatever the superclass returns (presumably true).
prefire() - Method in class ptolemy.actor.lib.conversions.SmoothToDouble
Return false if the input port has no token, otherwise return what the superclass returns (presumably true).
prefire() - Method in class ptolemy.actor.lib.conversions.StringToBoolean
Return false if the input port has no token, otherwise return what the superclass returns (presumably true).
prefire() - Method in class ptolemy.actor.lib.conversions.StringToDate
Return false if the input port has no token, otherwise return what the superclass returns (presumably true).
prefire() - Method in class ptolemy.actor.lib.conversions.StringToDouble
Return false if the input port has no token, otherwise return what the superclass returns (presumably true).
prefire() - Method in class ptolemy.actor.lib.conversions.StringToInt
Return false if the input port has no token, otherwise return what the superclass returns (presumably true).
prefire() - Method in class ptolemy.actor.lib.conversions.StringToIntArray
Return false if the input port has no token, otherwise return what the superclass returns (presumably true).
prefire() - Method in class ptolemy.actor.lib.conversions.StringToUnsignedByteArray
Return false if the input port has no token, otherwise return what the superclass returns (presumably true).
prefire() - Method in class ptolemy.actor.lib.conversions.StringToXML
Return true if there is token at the input input.
prefire() - Method in class ptolemy.actor.lib.conversions.UnsignedByteArrayToString
Return false if the input port has no token, otherwise return what the superclass returns (presumably true).
prefire() - Method in class ptolemy.actor.lib.DiscreteClock
Return true if current time has not exceeded the stopTime.
prefire() - Method in class ptolemy.actor.lib.DoubleReader
Deprecated.
Read one row from the input and prepare for output them.
prefire() - Method in class ptolemy.actor.lib.ElementsToArray
Return true if all channels of the input port have tokens, false if any channel does not have a token.
prefire() - Method in class ptolemy.actor.lib.Expression
Prefire this actor.
prefire() - Method in class ptolemy.actor.lib.gui.SliderSource
Record the current value of the slider.
prefire() - Method in class ptolemy.actor.lib.gui.TimedPlotter
Pre-fire this actor.
prefire() - Method in class ptolemy.actor.lib.hoc.ApplyFunction
Return true if the actor either of its input port has token.
prefire() - Method in class ptolemy.actor.lib.hoc.ApplyFunctionOverSequence
Deprecated.
Return true if the input ports have enough tokens.
prefire() - Method in class ptolemy.actor.lib.hoc.CaseDirector
Read the control token input, transfer input tokens, and invoke prefire() of the selected refinement.
prefire() - Method in class ptolemy.actor.lib.hoc.MobileFunction
Deprecated.
Return true if the actor either of its input port has token.
prefire() - Method in class ptolemy.actor.lib.hoc.MobileModel
Return true if the actor either of its input port has token.
prefire() - Method in class ptolemy.actor.lib.hoc.RunCompositeActor
Return true, indicating that this actor is always ready to fire.
prefire() - Method in class ptolemy.actor.lib.hoc.test.PreinitializeMustBeInvoked
 
prefire() - Method in class ptolemy.actor.lib.IIR
Return false if the input does not have a token.
prefire() - Method in class ptolemy.actor.lib.image.ImageReader
Read in an image.
prefire() - Method in class ptolemy.actor.lib.image.PGMReader
 
prefire() - Method in class ptolemy.actor.lib.image.URLToImage
Return false if the input port has no token, otherwise return what the superclass returns (presumably true).
prefire() - Method in class ptolemy.actor.lib.Lattice
Check to see if this actor is ready to fire.
prefire() - Method in class ptolemy.actor.lib.LevinsonDurbin
If there is no token on the autocorrelation input, return false.
prefire() - Method in class ptolemy.actor.lib.LinearDifferenceEquationSystem
If the parameter initialStates has changed, then update the internal state of this actor to be the value of the initialStates parameter.
prefire() - Method in class ptolemy.actor.lib.logic.Comparator
Check that each input port has at least one token, and if so, return the result of the superclass prefire() method.
prefire() - Method in class ptolemy.actor.lib.MovingAverage
Return false if the input does not have a token.
prefire() - Method in class ptolemy.actor.lib.MovingMaximum
Deprecated.
Return true if the prefire() method of the superclass returns true, and there is at least one token at the input port.
prefire() - Method in class ptolemy.actor.lib.PoissonClock
If the current time matches the expected time for the next output, then return true.
prefire() - Method in class ptolemy.actor.lib.Pulse
Start an iteration.
prefire() - Method in class ptolemy.actor.lib.python.PythonScript
Invoke the prefire() method if defined in the script.
prefire() - Method in class ptolemy.actor.lib.Reader
Deprecated.
Read one row from the input and prepare for output them.
prefire() - Method in class ptolemy.actor.lib.RecordAssembler
Return true if all connected input ports have tokens, false if some connected input ports do not have a token.
prefire() - Method in class ptolemy.actor.lib.RecordUpdater
Return true if all input ports have tokens, false if some input ports do not have a token.
prefire() - Method in class ptolemy.actor.lib.RecursiveLattice
Check to see if this actor is ready to fire.
prefire() - Method in class ptolemy.actor.lib.RunningMaximum
Return true if the prefire() method of the superclass returns true, and there is at least one token at the input port.
prefire() - Method in class ptolemy.actor.lib.RunningMinimum
Return true if the prefire() method of the superclass returns true, and there is at least one token at the input port.
prefire() - Method in class ptolemy.actor.lib.Select
Read a control token, if there is one, and check to see whether an input is available on the input channel specified by the most recent control token, if it is in range.
prefire() - Method in class ptolemy.actor.lib.Sequencer
Return false if either the input port or the sequenceNumber port lacks an input token.
prefire() - Method in class ptolemy.actor.lib.SequentialClock
Deprecated.
Set the current value.
prefire() - Method in class ptolemy.actor.lib.Source
If the trigger input is connected and it has no input or an unknown state, then return false.
prefire() - Method in class ptolemy.actor.lib.Synchronizer
If all of the input channels have at least one token, return what the superclass returns (presumably true).
prefire() - Method in class ptolemy.actor.lib.test.LoopTest2
 
prefire() - Method in class ptolemy.actor.lib.test.SearchTest
 
prefire() - Method in class ptolemy.actor.lib.TimedSource
Return false if the current time is greater than or equal to the stopTime parameter value.
prefire() - Method in class ptolemy.actor.lib.URLDirectoryReader
Deprecated.
Read one row from the input and prepare for output them.
prefire() - Method in class ptolemy.actor.lib.VariableSleep
Reset the flag that fire() checks so that fire() only sleeps once.
prefire() - Method in class ptolemy.actor.lib.VectorAssembler
Return true if all channels of the input port have tokens, false if any channel does not have a token.
prefire() - Method in class ptolemy.actor.parameters.ParameterSet
Check to see whether the specified file has changed, and if so, re-read it.
prefire() - Method in class ptolemy.actor.process.CompositeProcessDirector
If there are input or output ports, and this is the first iteration, then start threads to handle the inputs and outputs.
prefire() - Method in class ptolemy.actor.process.ProcessDirector
Start threads for all actors that have not had threads started already (this might include actors initialized since the last invocation of prefire).
prefire() - Method in class ptolemy.actor.sched.FixedPointDirector
Return true if the director is ready to fire.
prefire() - Method in class ptolemy.actor.sched.StaticSchedulingDirector
Return true if the director is ready to fire.
prefire() - Method in class ptolemy.actor.test.TestActor
Record the invocation, then return true.
prefire() - Method in class ptolemy.actor.test.TypedTestActor
Record the invocation, then return true.
prefire() - Method in class ptolemy.actor.util.PeriodicDirectorHelper
If the period value is greater than zero, then return true if the current time is a multiple of the value and the current microstep is 1.
prefire() - Method in class ptolemy.domains.continuous.kernel.ContinuousDirector
Initialize the fixed-point iteration by setting all receivers to unknown, and return true if we have not passed the stop time.
prefire() - Method in class ptolemy.domains.continuous.kernel.ContinuousIntegrator
If either the impulse or initialState input is unknown, then return false.
prefire() - Method in class ptolemy.domains.continuous.kernel.HybridModalDirector
Override the base class to set current time to match that of the enclosing executive director, if there is one, regardless of whether that time is in the future or past.
prefire() - Method in class ptolemy.domains.continuous.lib.EventSource
Deprecated.
Return true if this actor is scheduled to fire at the current time.
prefire() - Method in class ptolemy.domains.ddf.kernel.DDFDirector
Check the input ports of the container composite actor (if there are any) to see whether they have enough tokens, and return true if they do.
prefire() - Method in class ptolemy.domains.ddf.lib.DDFBooleanSelect
Return false if the port to read from in the current iteration does not have a token.
prefire() - Method in class ptolemy.domains.ddf.lib.DDFSelect
Return false if the port or channel it needs to read from in the following firing does not have a token.
prefire() - Method in class ptolemy.domains.de.kernel.DEDirector
Set the model time to the outside time if this director is not at the top level.
prefire() - Method in class ptolemy.domains.de.lib.AverageOverTime
Determine whether this actor can fire in the current iteration.
prefire() - Method in class ptolemy.domains.de.lib.MostRecent
If there is no input on the trigger port, return false, indicating that this actor does not want to fire.
prefire() - Method in class ptolemy.domains.de.lib.Queue
If there is no input on the trigger port, return false, indicating that this actor does not want to fire.
prefire() - Method in class ptolemy.domains.de.lib.Register
Return true if there is any token in the input or the trigger port.
prefire() - Method in class ptolemy.domains.de.lib.SharedQueue
Return true if either there is input at the input port, or there are triggering signals at the trigger port.
prefire() - Method in class ptolemy.domains.de.lib.TimeCompare
Return ture if this actor can fire.
prefire() - Method in class ptolemy.domains.de.lib.Wire
Deprecated.
Return true if there is any token on an input port.
prefire() - Method in class ptolemy.domains.modal.kernel.FSMActor
Return true.
prefire() - Method in class ptolemy.domains.modal.kernel.FSMDirector
Return true if the mode controller is ready to fire.
prefire() - Method in class ptolemy.domains.sdf.kernel.SDFDirector
Check the input ports of the container composite actor (if there are any) to see whether they have enough tokens, and return true if they do.
prefire() - Method in class ptolemy.domains.sdf.kernel.test.SDFTestDelay
This method should be invoked once per iteration, before the first invocation of fire() in that iteration.
prefire() - Method in class ptolemy.domains.sdf.lib.Autocorrelation
If there are not sufficient inputs, then return false.
prefire() - Method in class ptolemy.domains.sdf.lib.DotProduct
If both of the input ports have at least one token, return what the superclass returns (presumably true).
prefire() - Method in class ptolemy.domains.sdf.lib.FIR
Return false if the input does not have enough tokens to fire.
prefire() - Method in class ptolemy.domains.sdf.lib.LMSAdaptive
Return false if the error input does not have enough tokens to fire.
prefire() - Method in class ptolemy.domains.sdf.lib.MatrixJoin
Return true if each input channel has enough tokens for this actor to fire.
prefire() - Method in class ptolemy.domains.sdf.lib.SDFTransformer
Return true if the number of available tokens on the input port is at least the declared consumption rate for the port.
prefire() - Method in class ptolemy.domains.sdf.lib.SequenceToArray
Return true if the input port has enough tokens for this actor to fire.
prefire() - Method in class ptolemy.domains.sdf.lib.SequenceToMatrix
Return true if the input port has enough tokens for this actor to fire.
prefire() - Method in class ptolemy.domains.sdf.lib.VariableFIR
Return false if the input does not have enough tokens to fire.
prefire() - Method in class ptolemy.domains.sdf.lib.VariableLattice
Return false if the input does not have enough tokens to fire.
prefire() - Method in class ptolemy.domains.sdf.lib.VariableRecursiveLattice
Return false if the input does not have enough tokens to fire.
prefire() - Method in class ptolemy.matlab.Expression
Return true if all input ports have at least one token.
prefix - Variable in class org.nees.CreateUniqueFile
The character prefix to use in generating the file name.
preinitialize() - Method in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource
 
preinitialize() - Method in class org.ecoinformatics.seek.R.RExpression
 
preinitialize() - Method in class org.ecoinformatics.seek.R.RExpression2
 
preinitialize() - Method in class org.geon.DatabaseQuery
Read the outputType parameter and set output type accordingly.
preinitialize() - Method in class org.geon.FileToArray
Open the file or URL and read the first line, and use the first line to set the type of the output.
preinitialize() - Method in class org.geon.FileToString
Open the file or URL and read the first line, and use the first line to set the type of the output.
preinitialize() - Method in class org.geon.TransitiveClosureDBQuery
Set the output type
preinitialize() - Method in class org.kepler.actor.ArrayFilter
Read getIndices and set the output type.
preinitialize() - Method in class org.kepler.actor.io.ArrayOfRecordsWriter
Read the formatting parameter.
preinitialize() - Method in class org.kepler.actor.RecordOperation
 
preinitialize() - Method in class org.kepler.cloudsharing.actor.ShareToCloud
Clear the set of file names.
preinitialize() - Method in class org.kepler.data.datasource.dataone.DataOneActor
 
preinitialize() - Method in class org.kepler.data.datasource.dataturbine.DataTurbine
Reset the stop requested boolean.
preinitialize() - Method in class org.kepler.data.datasource.dataturbine.DataTurbineWriter
Preinitialize the actor.
preinitialize() - Method in class org.kepler.dataproxy.datasource.opendap.OpendapDataSource
 
preinitialize() - Method in class org.kepler.dataproxy.datasource.opendap.OpendapDataSourceODC
 
preinitialize() - Method in class org.kepler.ddp.actor.ExecutionChoice
List to port events for File input ports so that when a token is read, we can set the corresponding parameter.
preinitialize() - Method in class org.kepler.ddp.actor.ExecutionChoiceDirector
Add DDF director to any refinements that have no directors.
preinitialize() - Method in class org.kepler.ddp.actor.pattern.AtomicPatternActor
Update the port types based on the format type.
preinitialize() - Method in class org.kepler.ddp.actor.pattern.DDPDataSink
Make sure output is either data or file, but not both.
preinitialize() - Method in class org.kepler.ddp.actor.pattern.DDPDataSource
Make sure input is either data or file, but not both.
preinitialize() - Method in class org.kepler.ddp.actor.pattern.DualInputPatternActor
Override the parent class to check that parameter values are correctly set.
preinitialize() - Method in class org.kepler.ddp.actor.pattern.SingleInputPatternActor
Override the parent class to check that parameter values are correctly set.
preinitialize() - Method in class org.kepler.ddp.actor.pattern.stub.StubSinkActor
 
preinitialize() - Method in class org.kepler.ddp.director.DDPDirector
Preinitialize the engine.
preinitialize() - Method in class org.kepler.ddp.director.DDPEngine
Initialize fields from parameters.
preinitialize() - Method in class org.kepler.gis.actor.calc.Difference
 
preinitialize() - Method in class org.kepler.gis.actor.calc.JiffleRasterCalculator
 
preinitialize() - Method in class org.kepler.gis.actor.conversions.VectorToRaster
 
preinitialize() - Method in class org.kepler.gis.actor.kml.KMLWriter
Set the input ports to vector.
preinitialize() - Method in class org.kepler.gis.actor.landscape.CreateLandscape
 
preinitialize() - Method in class org.kepler.gis.actor.MapView
Set the input and output port types to be Vectors.
preinitialize() - Method in class org.kepler.gis.actor.pylaski.GetPylaskiMeasurements
 
preinitialize() - Method in class org.kepler.gis.actor.VectorSort
Check that propertyName and order are specified.
preinitialize() - Method in class org.kepler.gis.actor.windninja.ATMCombineFiles
 
preinitialize() - Method in class org.kepler.hadoop.actor.HDFSLoader
Get default value of HDFS Configure.
preinitialize() - Method in class org.kepler.hadoop.actor.HDFSRemover
Get default value of HDFS Configure.
preinitialize() - Method in class org.kepler.hadoop.actor.HDFSUnLoader
Get default value of HDFS Configure.
preinitialize() - Method in class org.kepler.hadoop.actor.HDFSWriter
Get default value of HDFS Configure.
preinitialize() - Method in class org.kepler.hadoop.director.HadoopEngine
 
preinitialize() - Method in class org.kepler.metadata.MetadataParser
 
preinitialize() - Method in class org.kepler.monitor.MonitorManager
Does nothing.
preinitialize() - Method in class org.kepler.provenance.actor.AddProvenanceKeyValues
 
preinitialize() - Method in class org.kepler.provenance.ProvenanceRecorder
This function is called when the manager is about to run the model and allows us to register with the manager before the run happens.
preinitialize() - Method in class org.kepler.reporting.ReportingListener
 
preinitialize() - Method in class org.kepler.scriptengine.ScriptEngineActor
Invoke the preinitialize() method of the script.
preinitialize() - Method in class org.kepler.sms.actors.MergeActor
 
preinitialize() - Method in class org.kepler.spark.actor.SparkBaseActor
 
preinitialize() - Method in class org.kepler.spark.actor.SparkSQLActor
 
preinitialize() - Method in class org.kepler.spark.director.SparkEngine
 
preinitialize() - Method in class org.kepler.spark.mllib.ConvertColumns
 
preinitialize() - Method in class org.kepler.spark.mllib.CreateVectorRDD
 
preinitialize() - Method in class org.kepler.spark.mllib.SparkSQLQuery
 
preinitialize() - Method in class org.kepler.stratosphere.director.StratosphereEngine
Initialize the engine.
preinitialize() - Method in class org.kepler.webview.actor.WebView
Perform initializations during workflow start up.
preinitialize() - Method in class org.kepler.webview.actor.WebViewAttribute
 
preinitialize() - Method in class org.sdm.spa.ArrayPermute
 
preinitialize() - Method in class org.sdm.spa.WebService
 
preinitialize() - Method in class org.sdm.spa.WSWithComplexTypes
Initialize the actor by getting the input and output parameters from the soap service.
preinitialize() - Method in class org.sdm.spa.XMLAssembler
Set all output ports whose types have not been set to XMLToken.
preinitialize() - Method in class ptolemy.actor.AbstractInitializableAttribute
Invoke preinitialize() on registered initializables.
preinitialize() - Method in class ptolemy.actor.AtomicActor
Create receivers and declare delay dependencies.
preinitialize() - Method in class ptolemy.actor.CompositeActor
Create receivers and invoke the preinitialize() method of the local director.
preinitialize() - Method in class ptolemy.actor.Director
Validate the attributes and then invoke the preinitialize() methods of all its deeply contained actors.
preinitialize(Actor) - Method in class ptolemy.actor.Director
Preinitialize the actor.
preinitialize() - Method in class ptolemy.actor.DoNothingDirector
 
preinitialize() - Method in interface ptolemy.actor.Initializable
This method should be invoked exactly once per execution of a model, before any of these other methods are invoked.
preinitialize() - Method in class ptolemy.actor.lib.BusAssembler
Makes sure that there is only one relation connected to the output port and recalculates its width.
preinitialize() - Method in class ptolemy.actor.lib.BusDisassembler
 
preinitialize() - Method in class ptolemy.actor.lib.CatchExceptionAttribute
Register this attribute with the manager.
preinitialize() - Method in class ptolemy.actor.lib.ClassWrapper
Get the Class object of the specified class.
preinitialize() - Method in class ptolemy.actor.lib.comm.Slicer
Set up the production constant.
preinitialize() - Method in class ptolemy.actor.lib.Default
Override the base class to declare that the output does not depend on the alternate in a firing.
preinitialize() - Method in class ptolemy.actor.lib.ExceptionManager
Register this attribute with the manager.
preinitialize() - Method in class ptolemy.actor.lib.Expression
Preinitialize this actor.
preinitialize() - Method in class ptolemy.actor.lib.gui.PlotterBase
Clear the plot, if there is one.
preinitialize() - Method in class ptolemy.actor.lib.gui.SketchedSource
Override the base class to not clear the plot.
preinitialize() - Method in class ptolemy.actor.lib.hoc.ApplyFunctionOverSequence
Deprecated.
Preinitialize the actor.
preinitialize() - Method in class ptolemy.actor.lib.hoc.ExecuteActor
Override the base class to not set type constraints between the output ports and parameters of the actor.
preinitialize() - Method in class ptolemy.actor.lib.hoc.ExecuteCompositeActor
Override the base class to set type constraints between the output ports and parameters of this actor whose name matches the output port.
preinitialize() - Method in class ptolemy.actor.lib.hoc.MobileModel
preinitialize this actor. create the director as specified by the director parameter.
preinitialize() - Method in class ptolemy.actor.lib.hoc.MultiInstanceComposite
Call the base class to perform standard preinitialize(), and, if this is the master copy, proceed to create MultiInstanceComposite.nInstances-1 additional copies, and link them to the same input/output ports this master is connected to.
preinitialize() - Method in class ptolemy.actor.lib.hoc.RunCompositeActor
Override the base class to set type constraints between the output ports and parameters of this actor whose name matches the output port.
preinitialize() - Method in class ptolemy.actor.lib.hoc.test.PreinitializeMustBeInvoked
 
preinitialize() - Method in class ptolemy.actor.lib.io.ExpressionReader
Deprecated.
Open the file or URL and read the first line, and use the first line to set the type of the output.
preinitialize() - Method in class ptolemy.actor.lib.io.LineWriter
Read the value of alwaysFlush parameter.
preinitialize() - Method in class ptolemy.actor.lib.LinearDifferenceEquationSystem
Check the dimension of all parameters.
preinitialize() - Method in class ptolemy.actor.lib.Publisher
Override the base class to ensure that links to subscribers have been updated.
preinitialize() - Method in class ptolemy.actor.lib.PublisherNonStrictTest
Override the base class to ensure that links to subscribers have been updated.
preinitialize() - Method in class ptolemy.actor.lib.python.PythonScript
Create an instance of the parameter named by the jythonClassName parameter that is defined in the script.
preinitialize() - Method in class ptolemy.actor.lib.r.RExpression
 
preinitialize() - Method in class ptolemy.actor.lib.r.RExpression2
Iterate through the ports.
preinitialize() - Method in class ptolemy.actor.lib.ResettableTimer
Override the base class to declare that the output does not depend on the input in a firing.
preinitialize() - Method in class ptolemy.actor.lib.SetVariable
If there is no variable with the specified name, then create one.
preinitialize() - Method in class ptolemy.actor.parameters.ParameterSet
Check to see whether the specified file has changed, and if so, re-read it, and invoke the preinitialize() methods of objects that have been added using addInitializable().
preinitialize() - Method in class ptolemy.actor.parameters.PortParameter
Reset the current value to match the persistent value.
preinitialize() - Method in class ptolemy.actor.parameters.SharedParameter
Traverse the model and update values.
preinitialize() - Method in class ptolemy.actor.process.ProcessDirector
Preinitialize the model controlled by this director.
preinitialize() - Method in class ptolemy.actor.PublisherPort
Override the base class to throw an exception if this port is at the top level.
preinitialize() - Method in class ptolemy.actor.PubSubPort
Do nothing.
preinitialize() - Method in class ptolemy.actor.SubscriberPort
Override the base class to ensure that there is a publisher.
preinitialize() - Method in class ptolemy.actor.SubscriptionAggregatorPort
Check that the port is not in the top level, then call preinitialize() in the super class.
preinitialize() - Method in class ptolemy.component.AtomicComponent
Preinitialize the component, which in this base class means doing nothing and returning immediately.
preinitialize() - Method in interface ptolemy.component.Component
Preinitialize the component.
preinitialize() - Method in class ptolemy.component.ComponentActor
Load the generated class and search for its fire method.
preinitialize() - Method in class ptolemy.component.ComponentDirector
Preinitialize the component.
preinitialize() - Method in class ptolemy.component.domains.ptinyos.PtinyOSDirector
Preinitialize the component.
preinitialize() - Method in class ptolemy.data.expr.AbstractInitializableParameter
Invoke preinitialize() on registered initializables.
preinitialize() - Method in class ptolemy.domains.continuous.kernel.ContinuousDirector
Preinitialize the model for an execution.
preinitialize() - Method in class ptolemy.domains.continuous.lib.ContinuousTransferFunction
Sanity check the parameters; if the parameters are legal create a continuous-time subsystem that implement the transfer function, preinitialize all the actors in the subsystem, and set the opaqueness of this actor to true.
preinitialize() - Method in class ptolemy.domains.continuous.lib.DifferentialSystem
Create the model inside from the parameter values.
preinitialize() - Method in class ptolemy.domains.continuous.lib.LevelCrossingDetector
Make sure the actor runs with a ContinuousDirector.
preinitialize() - Method in class ptolemy.domains.continuous.lib.LinearStateSpace
Sanity check the parameters; if the parameters are legal create a continuous-time subsystem that implement the model, preinitialize all the actors in the subsystem, and set the opaqueness of this actor to true.
preinitialize() - Method in class ptolemy.domains.continuous.lib.PeriodicSampler
Make sure the actor runs inside a domain that understands superdense time.
preinitialize() - Method in class ptolemy.domains.de.kernel.DEDirector
Set the current timestamp to the model start time, invoke the preinitialize() methods of all actors deeply contained by the container.
preinitialize() - Method in class ptolemy.domains.modal.kernel.FSMActor
Create receivers and input variables for the input ports of this actor, and validate attributes of this actor, and attributes of the ports of this actor.
preinitialize() - Method in class ptolemy.domains.modal.kernel.FSMDirector
Check whether contained refinements have a director.
preinitialize() - Method in class ptolemy.domains.modal.kernel.MultirateFSMDirector
Preinitialize all actors deeply contained by the container of this director.
preinitialize() - Method in class ptolemy.domains.pn.kernel.PNDirector
Override the base class to reset the capacities of all the receivers.
preinitialize() - Method in class ptolemy.domains.sdf.kernel.SDFDirector
Preinitialize the actors associated with this director and compute the schedule.
preinitialize() - Method in class ptolemy.domains.sdf.lib.LineCoder
Set up the consumption constant.
preinitialize() - Method in class ptolemy.domains.sdf.lib.SampleDelay
Check that the initialOutputs parameter contains an array token.
preinitialize() - Method in class ptolemy.matlab.Expression
Open a matlab engine.
preinitialize() - Method in class ptolemy.vergil.actor.lib.LEDMatrix
 
preinitialize() - Method in class ptolemy.vergil.actor.lib.ShowTypes
Override the base class to also register as an execution listener with the Manager.
preinitializeAndResolveTypes() - Method in class ptolemy.actor.Manager
Preinitialize the model.
preinitializeIfNecessary() - Method in class ptolemy.actor.Manager
If the workspace version has changed since the last invocation of preinitializeAndResolveTypes(), then invoke it now and set the state of the Manager to IDLE upon completion.
PreinitializeMustBeInvoked - Class in ptolemy.actor.lib.hoc.test
Preinitialize() must be invoked after wrapup.
PreinitializeMustBeInvoked(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.hoc.test.PreinitializeMustBeInvoked
Construct an actor with the given container and name.
preinitializeThenWrapup(Actor) - Static method in class ptolemy.actor.Manager
Invoke preinitialize() and wrapup().
PREINITIALIZING - Static variable in class ptolemy.actor.Manager
Indicator that the execution is in the preinitialize phase.
prepareEditor(TableCellEditor, int) - Method in class org.kepler.workflowrunmanager.gui.GroupableTableHeader
 
prepareNamedObjs(List<KeplerLSID>) - Method in class org.kepler.kar.ExportRunsToKAR
helper method prepares list of NamedObjs (workflows) for KAR from list of run LSIDs
prepend(Nameable) - Method in class ptolemy.kernel.util.NamedList
Add an element to the beginning of the list.
prependPlatformDependentShellCommand - Variable in class ptolemy.actor.lib.Exec
If true, then prepend the platform dependent shell command to the parsed value of the command parameter.
prerequisites(Actor) - Static method in class ptolemy.actor.util.ActorDependencies
Return a Set of AtomicActors that are connected upstream to this AtomicActor.
prerequisites(Actor, Class) - Static method in class ptolemy.actor.util.ActorDependencies
Return a Set of actors that match the specified filter that are connected upstream to the specified actor.
pressDuration - Variable in class ptolemy.actor.lib.gui.EventButton
Amount of time to keep the button depressed, in seconds.
pressureIO - Variable in class org.kepler.data.conversion.binary.EnsembleActor
 
prettyPrint() - Method in class org.kepler.configuration.ConfigurationProperty
print this configurationProperty nicely showing the hierarchy
prettyPrintList(List<ConfigurationProperty>) - Static method in class org.kepler.configuration.ConfigurationProperty
pretty print a list of configuration properties
prevCharIsCR - Variable in class ptolemy.data.expr.SimpleCharStream
 
prevCharIsCR - Variable in class ptolemy.moml.unit.SimpleCharStream
 
prevCharIsLF - Variable in class ptolemy.data.expr.SimpleCharStream
 
prevCharIsLF - Variable in class ptolemy.moml.unit.SimpleCharStream
 
preview() - Method in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource
 
preview() - Method in interface org.kepler.actor.preview.Previewable
Implementers should provide some sort of preview (typically presenting a GUI) of the actor that is implementing this interface
preview - Variable in class org.mlc.swing.layout.ComponentDef
 
PREVIEW_TEXT_COLOR - Static variable in class org.kepler.workflowrunmanager.WRMDefaults
 
Previewable - Interface in org.kepler.actor.preview
 
PreviewActorAction - Class in org.kepler.gui
This action is used to "Preview" the actor.
PreviewActorAction(TableauFrame) - Constructor for class org.kepler.gui.PreviewActorAction
Constructor
Previous - Class in ptolemy.domains.de.lib
On each iteration, this actor produces the token received on the previous iteration.
Previous(CompositeEntity, String) - Constructor for class ptolemy.domains.de.lib.Previous
Construct an actor with the specified container and name.
PreviousExecutionPanel - Class in org.kepler.profiling.gui
A panel that displays actor execution information for the currently selected workflow in the Workflow Run Manager.
PreviousExecutionPanel(String) - Constructor for class org.kepler.profiling.gui.PreviousExecutionPanel
Create a new PreviousExecutionPanel with the specified name.
PreviousExecutionPanel.Factory - Class in org.kepler.profiling.gui
A factory to create the tab pane.
primaryElement() - Method in class ptolemy.data.expr.PtParser
 
PRIMARYKEY - Static variable in interface org.kepler.objectmanager.data.db.Constraint
 
PRIMARYKEY - Static variable in interface org.kepler.objectmanager.data.db.DSTableKeyIFace
Indicates a Primary Key
PrimaryKey - Class in org.kepler.objectmanager.data.db
This class represents a primary key constraint in eml
PrimaryKey() - Constructor for class org.kepler.objectmanager.data.db.PrimaryKey
 
PRIMARYKEYSTRING - Static variable in interface org.kepler.objectmanager.data.db.Constraint
 
principal() - Method in class org.kepler.webview.server.auth.DrupalUser
 
principal() - Method in class org.kepler.webview.server.auth.NoneUser
 
print() - Method in class org.ecoinformatics.seek.ecogrid.DocumentType
 
print() - Method in class org.ecoinformatics.seek.ecogrid.EcoGridService
Method to print out the service
print() - Method in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
Print out every service in the list
print() - Method in class org.ecoinformatics.seek.sms.AnnotationEngine
For testing... dumps out the annotations using n3 syntax.
print(File, String, String) - Method in class org.kepler.io.SharedLog
 
print(File, String, String, boolean) - Method in class org.kepler.io.SharedLog
 
print(Graphics, PageFormat, int) - Method in class ptolemy.actor.gui.HTMLViewer
Print the documentation to a printer.
print(Graphics, PageFormat, int) - Method in class ptolemy.actor.gui.PlotTableauFrame
Print the plot to a printer, which is represented by the specified graphics object.
print(Graphics, PageFormat, int) - Method in class ptolemy.actor.gui.RunTableau.RunFrame
Print the plot to a printer, represented by the specified graphics object.
print(Graphics, PageFormat, int) - Method in class ptolemy.actor.gui.TextEditor
Print the text to a printer, which is represented by the specified graphics object.
print(Graphics, Rectangle) - Method in class ptolemy.actor.gui.TextEditor
Print the text to a printer, which is represented by the specified graphics object.
print() - Method in class ptolemy.data.FixToken
Print the content of this FixToken: This is used for debugging only.
print(Graphics, PageFormat, int) - Method in class ptolemy.plot.PlotBox
Print the plot to a printer, represented by the specified graphics object.
print(Graphics, PageFormat, int) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Print the visible portion of the graph to a printer, which is represented by the specified graphics object.
printConnectedPorts(ComponentPort) - Method in class ptolemy.kernel.test.ExampleSystem
Print the connected ports for a given ComponentPort.
printDebug() - Method in class org.kepler.data.conversion.binary.EnsembleActor
 
printDebug() - Method in class org.kepler.workflowrunmanager.WorkflowRunManagerManager
 
printDebugInfo() - Method in class org.kepler.gui.MenuMapper
Debugging method
printDebugInfo() - Method in class org.kepler.gui.ModelToFrameManager
Print the map for debugging purposes.
printDebugInfo() - Method in class org.kepler.objectmanager.ObjectManager
Print the objects that are currently registered with the ObjectManager.
printDeepConnectedPorts(ComponentPort) - Method in class ptolemy.kernel.test.ExampleSystem
Print the deeply connected ports for a given ComponentPort.
printDeepLinkedPorts(ComponentRelation) - Method in class ptolemy.kernel.test.ExampleSystem
Print the deeply linked ports for a given ComponentRelation.
printExeSummary - Variable in class org.kepler.ddp.actor.pattern.SingleInputPatternActor
If true, print an execution summary to the log file each time the sub-workflow executes in the Hadoop or Stratosphere job.
printFix() - Method in class ptolemy.math.FixPoint
Print useful debug information about the FixPoint to standard out.
printLinkedPorts(ComponentRelation) - Method in class ptolemy.kernel.test.ExampleSystem
Print the linked ports for a given ComponentRelation.
printNode(Node, int) - Static method in class org.ecoinformatics.seek.querybuilder.DBUIUtils
Prints a DOM Tree (recursive)
printParseTree(ASTPtRootNode) - Method in class ptolemy.data.expr.ParseTreeWriter
Return an expression for this parse tree, or a description of the exception if an exception occurs.
printPDF() - Method in class ptolemy.actor.gui.TableauFrame
If a PDF printer is available print to it.
printPrecisionFormat(Precision) - Method in class ptolemy.math.Precision.ExpressionLanguagePrecisionFormat
Regular expression for ExpressionLanguagePrecisionFormat.
printPrecisionFormat(Precision) - Method in class ptolemy.math.Precision.IntegerFractionPrecisionFormat
 
printPrecisionFormat(Precision) - Method in class ptolemy.math.Precision.LengthExponentPrecisionFormat
 
printPrecisionFormat(Precision) - Method in class ptolemy.math.Precision.LengthIntegerPrecisionFormat
 
printPrecisionFormat(Precision) - Method in class ptolemy.math.Precision.PrecisionFormat
Creates a valid String representation of the Precision object based on the rules of the given string format.
printPrecisionFormat(Precision) - Method in class ptolemy.math.Precision.VHDLPrecisionFormat
 
printStackTrace() - Method in exception com.microstar.xml.XmlException
Print the following to stderr: this exception, its stack trace and if the cause exception is known, print the cause exception and the cause stacktrace.
printStackTrace(PrintStream) - Method in exception com.microstar.xml.XmlException
Print this exception, its stack trace and if the cause exception is known, print the cause exception and the cause stacktrace.
printStackTrace(PrintWriter) - Method in exception com.microstar.xml.XmlException
Print this exception, its stack trace and if the cause exception is known, print the cause exception and the cause stacktrace.
printStackTrace() - Method in exception ptolemy.kernel.util.KernelException
Print a stack trace message to stderr including this exception, its stack trace and if the cause exception is known, print the cause exception and the cause stacktrace.
printStackTrace(PrintStream) - Method in exception ptolemy.kernel.util.KernelException
Print a stack trace message to printStream including this exception, its stack trace and if the cause exception is known, print the cause exception and the cause stacktrace.
printStackTrace(PrintWriter) - Method in exception ptolemy.kernel.util.KernelException
Print a stack trace message to printWriter including this exception, its stack trace and if the cause exception is known, print the cause exception and the cause stacktrace.
printStackTrace() - Method in exception ptolemy.kernel.util.KernelRuntimeException
Print a stack trace message to stderr including this exception, its stack trace and if the cause exception is known, print the cause exception and the cause stacktrace.
printStackTrace(PrintStream) - Method in exception ptolemy.kernel.util.KernelRuntimeException
Print a stack trace message to printStream including this exception, its stack trace and if the cause exception is known, print the cause exception and the cause stacktrace.
printStackTrace(PrintWriter) - Method in exception ptolemy.kernel.util.KernelRuntimeException
Print a stack trace message to printWriter including this exception, its stack trace and if the cause exception is known, print the cause exception and the cause stacktrace.
printString() - Method in interface org.kepler.objectmanager.data.db.Constraint
 
printString() - Method in class org.kepler.objectmanager.data.db.ForeignKey
Method to print out a part sql command about foreign key In foreign key, you don't need to specify the referenced entity's column name, the primary key column(s) of the referenced table is used as the referenced column(s)
printString() - Method in class org.kepler.objectmanager.data.db.JoinConditionConstraint
Method to print out a part sql command about joincondition.
printString() - Method in class org.kepler.objectmanager.data.db.NotNullConstraint
Method to print not null key words in sql cmommand
printString() - Method in class org.kepler.objectmanager.data.db.PrimaryKey
Method to transfer a primary key into sql command (table constraint) The string will look like: CONSTRAINT constrain_name Primary Key ( col1, col2, ...)
printString() - Method in class org.kepler.objectmanager.data.db.UniqueKey
Method to transfer a unique key into sql command (table constraint) The string will look like: CONSTRAINT constrain_name Primary Key ( col1, col2, ...)
Priority - Class in ptolemy.actor.parameters
A parameter to store an integer number priority in an actor.
Priority(NamedObj, String) - Constructor for class ptolemy.actor.parameters.Priority
Construct a priority parameter with the given name contained by the specified entity.
priority - Variable in class ptolemy.domains.de.lib.Server
The priority.
privateSeed - Variable in class ptolemy.actor.lib.RandomSource
This private seed overrides the shared seed parameter to specify a particular seed rather than using System.currentTimeMillis() or hashCode() to compute the seed value.
probability - Variable in class ptolemy.actor.lib.comm.HuffmanBasic.Node
The probability of the node.
probability - Variable in class ptolemy.domains.modal.kernel.FSMActor
Parameter that is a function which evaluates to true when the randomly generated token value is within the probability range expressed by a transition.
procedureExists(String) - Method in class org.kepler.util.sql.DatabaseType
See if a stored procedure name exists in the database.
PROCESS_BLOCKED - Static variable in class ptolemy.domains.pn.kernel.event.PNProcessEvent
The process is in the blocked state.
PROCESS_FINISHED - Static variable in class ptolemy.domains.pn.kernel.event.PNProcessEvent
The process is in the finished state.
PROCESS_PAUSED - Static variable in class ptolemy.domains.pn.kernel.event.PNProcessEvent
The process is in the paused state.
PROCESS_RUNNING - Static variable in class ptolemy.domains.pn.kernel.event.PNProcessEvent
The process is in the running state.
processAccessRequest(HttpServletRequest, String) - Method in class org.geon.LidarUtilities
 
processArgs(String[]) - Method in class ptolemy.actor.gui.CompositeActorApplication
Parse the command-line arguments, creating models as specified.
processArgs(String[]) - Method in class ptolemy.actor.gui.CompositeActorSimpleApplication
Parse the command-line arguments, creating models as specified.
ProcessDirector - Class in ptolemy.actor.process
The base class for directors for the process oriented domains.
ProcessDirector() - Constructor for class ptolemy.actor.process.ProcessDirector
Construct a director in the default workspace with an empty string as its name.
ProcessDirector(Workspace) - Constructor for class ptolemy.actor.process.ProcessDirector
Construct a director in the workspace with an empty name.
ProcessDirector(CompositeEntity, String) - Constructor for class ptolemy.actor.process.ProcessDirector
Construct a director in the given container with the given name.
processDOM(DSSchemaIFace, Document) - Static method in class org.ecoinformatics.seek.querybuilder.DBQueryDefParserEmitter
Reads in a XML document that is a query definition
processDOM(Document) - Static method in class org.ecoinformatics.seek.querybuilder.DBSchemaParserEmitter
Create a DSSchemaIFace object from an XML DOM
ProcessFileRT - Class in org.sdm.spa
no documentation yet.
ProcessFileRT(CompositeEntity, String) - Constructor for class org.sdm.spa.ProcessFileRT
Construct an ExecuteCmd actor with the given container and name.
processFinished(PNProcessEvent) - Method in interface ptolemy.domains.pn.kernel.event.PNProcessListener
Called to report that the execution of a process finished.
processFinished(PNProcessEvent) - Method in class ptolemy.domains.pn.kernel.event.test.StringPNListener
Called to report that the execution of a process finished.
processingInstruction(String, String) - Method in class com.microstar.xml.demo.EventDemo
Handle a processing instruction by printing an event.
processingInstruction(String, String) - Method in class com.microstar.xml.demo.XmlApp
Handle a processing instruction.
processingInstruction(String, String) - Method in class com.microstar.xml.demo.XmlApplet
Handle a processing instruction.
processingInstruction(String, String) - Method in class com.microstar.xml.driver.SAXDriver
Implement com.microstar.xml.XmlHandler#processingInstruction.
processingInstruction(String, String) - Method in class com.microstar.xml.HandlerBase
Handle a processing instruction.
processingInstruction(String, String) - Method in interface com.microstar.xml.XmlHandler
Processing instruction.
processingInstruction(String, String) - Method in class org.kepler.reporting.rio.fop.tools.EasyGenerationContentHandlerProxy
 
processingInstruction(String, String) - Method in class ptolemy.configs.test.ValidatingXMLParser
 
processingInstruction(String, String) - Method in class ptolemy.moml.MoMLParser
Handle a processing instruction.
PROCESSLIMIT - Variable in class org.geon.LidarUtilities
 
PROCESSLIMITNOACC - Variable in class org.geon.LidarUtilities
 
processName(String) - Static method in class org.kepler.configuration.ConfigurationProperty
process a name with . notations into a string array
ProcessReceiver - Interface in ptolemy.actor.process
A ProcessReceiver is an interface for receivers in the process oriented domains.
ProcessSink - Class in ptolemy.actor.process.test
Base class for simple data sinks.
ProcessSink(TypedCompositeActor, String) - Constructor for class ptolemy.actor.process.test.ProcessSink
Construct an actor with an input multiport.
processStateChanged(PNProcessEvent) - Method in interface ptolemy.domains.pn.kernel.event.PNProcessListener
Called to report that a process has changed its state (i.e. started, or blocked or unblocked, etc.).
processStateChanged(PNProcessEvent) - Method in class ptolemy.domains.pn.kernel.event.test.StringPNListener
Called to report that a process has changed its state (i.e. started, or blocked or unblocked, etc.).
processTabChange() - Method in class org.ecoinformatics.seek.querybuilder.QBApp
Process when TAB changes
processTabForSQL(int) - Method in class org.ecoinformatics.seek.querybuilder.QBApp
Returns the SQL in a TAB of the builder and sets it into the SQL Tab's readonly text editor
ProcessThread - Class in ptolemy.actor.process
Thread class acting as a process for process oriented domains.
ProcessThread(Actor, ProcessDirector) - Constructor for class ptolemy.actor.process.ProcessThread
Construct a thread to be used for the execution of the iteration methods of the actor.
processTime(long) - Method in class org.geon.LidarUtilities
 
processWhereNode(DSSchemaIFace, Node, DBWhereOperator) - Static method in class org.ecoinformatics.seek.querybuilder.DBQueryDefParserEmitter
Processes the where node
processXmlEntryContents(String) - Method in class org.kepler.kar.karxml.KarXmlGenerator
Strip out the "
product(Complex[]) - Static method in class ptolemy.math.ComplexArrayMath
Return the product of the elements in the array.
productOfElements(double[]) - Static method in class ptolemy.math.DoubleArrayStat
Return the product of all of the elements in the array.
profile - Variable in class ptolemy.domains.pn.kernel.test.TestDirector
 
profile() - Method in class ptolemy.kernel.util.test.PtestWorkspace
 
profile() - Method in class ptolemy.kernel.util.test.TestWorkspace
 
profile - Variable in class ptolemy.kernel.util.test.TestWorkspace2
 
profile() - Method in class ptolemy.kernel.util.test.TestWorkspace2
Return a profile which contains the various actions performed by this object.
profile() - Method in class ptolemy.kernel.util.test.TestWorkspaceBase
 
program - Variable in class org.kepler.ddp.actor.ExecutionChoice
The command line program to execute.
PROGRAMATIC_FILTER - Static variable in class org.kepler.workflowrunmanager.WorkflowRunManagerEvent
 
programticFilter(Map<String, String>) - Method in class org.kepler.workflowrunmanager.WorkflowRunManager
fire a programatic filter event for the benefit of any listeners.
progressBar() - Method in class ptolemy.gui.StatusBar
Return the progress bar associated with this status bar.
ProgressBarControlInterface - Interface in org.kepler.workflowscheduler.gui
A interface to control the progress bar
ProgressBarFigure - Class in org.kepler.monitor.figure
A "progress bar" monitor figure.
ProgressBarFigure(RectangularShape) - Constructor for class org.kepler.monitor.figure.ProgressBarFigure
Creates an horizontal and indeterminate progress bar figure.
PROGRESSMAX - Static variable in class org.kepler.workflowscheduler.gui.WorkflowSchedulerDialog
 
PROGRESSMIN - Static variable in class org.kepler.workflowscheduler.gui.WorkflowSchedulerDialog
 
ProgressMonitorSwingWorker - Class in org.kepler.gui
 
ProgressMonitorSwingWorker(String) - Constructor for class org.kepler.gui.ProgressMonitorSwingWorker
Create a ProgressMonitorSwingWorker.
project(InterfaceAutomaton) - Method in class ptolemy.domains.modal.kernel.ia.InterfaceAutomaton
Project this automaton into the specified one.
Project - Class in ptolemy.domains.modal.kernel.test
Compute the projection of an interface automaton to another one.
Project(String, String) - Constructor for class ptolemy.domains.modal.kernel.test.Project
Compute the projection of the first automaton to the second one and write the result to stdout.
prompt - Variable in class ptolemy.actor.lib.gui.InteractiveShell
The prompt.
promptKeyboardInteractive(String, String, String, String[], boolean[]) - Method in class org.sdm.spa.Ssh2Exec.MyUserInfo
 
promptPassphrase(String) - Method in class org.geon.Scp.MyUserInfo
 
promptPassphrase(String) - Method in class org.sdm.spa.Ssh2Exec.MyUserInfo
 
promptPassword(String) - Method in class org.geon.Scp.MyUserInfo
 
promptPassword(String) - Method in class org.sdm.spa.Ssh2Exec.MyUserInfo
 
promptYesNo(String) - Method in class org.geon.Scp.MyUserInfo
 
promptYesNo(String) - Method in class org.sdm.spa.Ssh2Exec.MyUserInfo
 
propagateExistence() - Method in class ptolemy.kernel.ComponentEntity
Propagate the existence of this object.
propagateExistence() - Method in interface ptolemy.kernel.util.Derivable
Propagate the existence of this object.
propagateExistence() - Method in class ptolemy.kernel.util.NamedObj
Propagate the existence of this object.
propagateNameChanges - Variable in class ptolemy.actor.lib.Publisher
If true, then propagate channel name changes to any Subscribers.
propagateNameChanges - Variable in class ptolemy.actor.PublisherPort
If true, then propagate channel name changes to any Subscribers.
propagateValue() - Method in interface ptolemy.kernel.util.Derivable
Propagate the value (if any) held by this object to derived objects that have not been overridden.
propagateValue() - Method in class ptolemy.kernel.util.NamedObj
Propagate the value (if any) held by this object to derived objects that have not been overridden.
propagateValueCount - Variable in class ptolemy.actor.parameters.test.TestSharedParameter
 
propagateValues() - Method in class ptolemy.kernel.util.NamedObj
If this object has a value that has been set directly, or if it has a value that has propagated in, then propagate that value to all derived objects, and then repeat this for all objects this object contains.
properties - Variable in class org.kepler.reporting.rio.ItemProperties
 
propertiesFileName() - Static method in class ptolemy.util.StringUtilities
Return the name of the properties file.
PropertiesPanel - Class in org.kepler.reporting.gui
 
PropertiesPanel() - Constructor for class org.kepler.reporting.gui.PropertiesPanel
 
PropertiesPanel.Factory - Class in org.kepler.reporting.gui
 
PropertiesTable - Class in org.kepler.reporting.gui
 
PropertiesTable() - Constructor for class org.kepler.reporting.gui.PropertiesTable
 
PropertiesTable(TableModel) - Constructor for class org.kepler.reporting.gui.PropertiesTable
 
PropertiesTable(TableModel, TableColumnModel) - Constructor for class org.kepler.reporting.gui.PropertiesTable
 
PropertiesTable(TableModel, TableColumnModel, ListSelectionModel) - Constructor for class org.kepler.reporting.gui.PropertiesTable
 
PropertiesTable(int, int) - Constructor for class org.kepler.reporting.gui.PropertiesTable
 
PropertiesTable(Vector, Vector) - Constructor for class org.kepler.reporting.gui.PropertiesTable
 
PropertiesTable(Object[][], Object[]) - Constructor for class org.kepler.reporting.gui.PropertiesTable
 
PropertiesTable(TableModel, RowEditorModel) - Constructor for class org.kepler.reporting.gui.PropertiesTable
 
property(String) - Static method in class ptolemy.data.expr.UtilityFunctions
Get the specified property from the environment.
PropertyAttribute - Class in org.kepler.moml
An entity for a property.
PropertyAttribute() - Constructor for class org.kepler.moml.PropertyAttribute
 
PropertyAttribute(CompositeEntity, String) - Constructor for class org.kepler.moml.PropertyAttribute
 
PropertyAttribute(Workspace) - Constructor for class org.kepler.moml.PropertyAttribute
 
PropertyAttribute(Workspace, String) - Constructor for class org.kepler.moml.PropertyAttribute
 
propertyChange(PropertyChangeEvent) - Method in class org.kepler.monitor.FigureUpdater
 
propertyChange(PropertyChangeEvent) - Method in class org.kepler.workflowrunmanager.gui.WorkflowRunManagerPanel
 
propertyChange(PropertyChangeEvent) - Method in class ptolemy.plot.PlotFrame
Respond to dialog action.
PropertyClassChanges - Class in ptolemy.moml.filter
When this class is registered with the MoMLParser.setMoMLFilter() method, it will cause MoMLParser to filter so that models from earlier releases will run in the current release.
PropertyClassChanges() - Constructor for class ptolemy.moml.filter.PropertyClassChanges
 
PropertyEntity - Class in org.kepler.moml
An entity for a director.
PropertyEntity() - Constructor for class org.kepler.moml.PropertyEntity
 
PropertyEntity(CompositeEntity, String) - Constructor for class org.kepler.moml.PropertyEntity
 
PropertyEntity(Workspace) - Constructor for class org.kepler.moml.PropertyEntity
 
PropertyEntity(Workspace, String) - Constructor for class org.kepler.moml.PropertyEntity
 
propertyName - Variable in class org.kepler.gis.actor.pylaski.PylaskiProperty
 
propertyName - Variable in class org.kepler.gis.actor.VectorProperty
The name of the property to extract.
propertyName - Variable in class org.kepler.gis.actor.VectorSort
The name of the property to sort on.
PropertyTimer() - Constructor for class org.kepler.monitor.MonitoredStatus.PropertyTimer
 
proposeTime(Time) - Method in class ptolemy.actor.lib.SynchronizeToRealTime
Propose a time to advance to.
proposeTime(Time) - Method in interface ptolemy.actor.TimeRegulator
Propose a time to advance to.
protocol - Variable in class org.sdm.spa.actors.transport.GenericFileCopier
Type of a protocol to be used to do file transfer.
protocolPathDest - Variable in class org.sdm.spa.actors.transport.FileCopierBase
 
protocolPathDest - Variable in class org.sdm.spa.actors.transport.GenericFileCopier
Path where the protocol is installed in the destination machine
protocolPathSrc - Variable in class org.sdm.spa.actors.transport.FileCopierBase
 
protocolPathSrc - Variable in class org.sdm.spa.actors.transport.GenericFileCopier
Path where the protocol is installed in the source machine
PROVENANCE_REPOSITORY - Static variable in class org.kepler.util.ProvenanceStore
 
ProvenanceConfigureAction - Class in org.kepler.provenance.gui
An action that toggles the default provenance recorder in the top level workflow container.
ProvenanceConfigureAction(KeplerGraphFrame) - Constructor for class org.kepler.provenance.gui.ProvenanceConfigureAction
 
provenanceDefaultsProperty - Static variable in class org.kepler.workflowrunmanager.WRMDefaults
 
ProvenanceEnabledListener - Interface in org.kepler.provenance
A listener interface to notify when the provenance recorder is enabled or disabled.
ProvenanceEvent - Class in org.kepler.provenance
An event that is published by actors as they fire to report provenance.
ProvenanceEvent(Actor, Map<String, String>) - Constructor for class org.kepler.provenance.ProvenanceEvent
 
ProvenanceHandler - Class in org.kepler.webview.server.handler
Handler that queries from provenance.
ProvenanceHandler(WebViewServer) - Constructor for class org.kepler.webview.server.handler.ProvenanceHandler
 
ProvenanceManager - Class in org.kepler.provenance.manager
A utility class containing static methods and a command line interface to manange provenance.
ProvenanceManager() - Constructor for class org.kepler.provenance.manager.ProvenanceManager
 
provenanceout - Variable in class org.sdm.spa.ProcessFileRT
Output file as result (recordtype {name=string, data=long, size=long}).
ProvenanceRecorder - Class in org.kepler.provenance
A listener that records workflow provenance information.
ProvenanceRecorder() - Constructor for class org.kepler.provenance.ProvenanceRecorder
Construct a provenance recorder in the default workspace using the TOP Recorder Name specified in the configuration file.
ProvenanceRecorder(ConfigurationProperty) - Constructor for class org.kepler.provenance.ProvenanceRecorder
Construct a provenance recorder in the default workspace using non-default ConfigurationProperty.
ProvenanceRecorder(CompositeEntity) - Constructor for class org.kepler.provenance.ProvenanceRecorder
Construct a provenance recorder using the specified container.
ProvenanceRecorder(Workspace) - Constructor for class org.kepler.provenance.ProvenanceRecorder
Construct a provenance recorder in the workspace with an empty name.
ProvenanceRecorder(CompositeEntity, String) - Constructor for class org.kepler.provenance.ProvenanceRecorder
Construct a provenance recorder in the given container with the given name.
ProvenanceStore - Class in org.kepler.util
 
ProvenanceStore(ConfigurationProperty) - Constructor for class org.kepler.util.ProvenanceStore
 
ProvenanceStore(ConfigurationProperty, EcogridRepository) - Constructor for class org.kepler.util.ProvenanceStore
 
ProvenanceUtil - Class in org.kepler.reporting.rio.util
 
ProvenanceUtil() - Constructor for class org.kepler.reporting.rio.util.ProvenanceUtil
 
provideContent(WebExporter) - Method in class ptolemy.vergil.basic.export.web.LinkToOpenTableaux
Provide content to the specified web exporter to be included in a web page for the container of this object.
provideContent(WebExporter) - Method in class ptolemy.vergil.basic.export.web.Title
Return a title for the model.
provideContent(WebExporter) - Method in class ptolemy.vergil.basic.export.web.WebContent
Provide content to the specified web exporter.
provideContent(WebExporter) - Method in interface ptolemy.vergil.basic.export.web.WebExportable
Provide content to the specified web exporter.
ProvKAREntryHandler - Class in org.kepler.kar.handlers
A KAR entry handler that imports/exports workflow provenance in PROV format.
ProvKAREntryHandler() - Constructor for class org.kepler.kar.handlers.ProvKAREntryHandler
Construct a new ProvKAREntryHandler.
ProvKAREntryHandler.Factory - Class in org.kepler.kar.handlers
A factory that creates a ProvKAREntryHandler object.
ProvQuery - Class in org.kepler.provenance.prov
A class to query provenance in PROV serializations.
ProvQuery(InputStream, InteropFramework.ProvFormat) - Constructor for class org.kepler.provenance.prov.ProvQuery
Create a new ProvQuery from an input stream using a specific format.
ProvQuery(String) - Constructor for class org.kepler.provenance.prov.ProvQuery
Create a new ProvQuery for a PROV serialization in the specified file.
ProvRecording - Class in org.kepler.provenance.prov
A Recording for PROV output.
ProvRecording() - Constructor for class org.kepler.provenance.prov.ProvRecording
Construct a new ProvRecording.
ProvUtilities - Class in org.kepler.provenance.prov
Utilities for PROV.
ProxyEntity - Class in org.kepler.authentication
ProxyEntity is used to store the user's proxy Note: 1.
ProxyEntity() - Constructor for class org.kepler.authentication.ProxyEntity
constructor
proxyExists(String, String) - Method in class org.kepler.authentication.AuthenticationManager
Check if a credential with the given domain exists in this manager
proxyExists(String, Domain) - Method in class org.kepler.authentication.ProxyRepository
Check if a credential with the given domain exists in this repository
ProxyRepository - Class in org.kepler.authentication
ProxyRepository is used to store all of the proxies requested by the user.
ProxyRepository() - Constructor for class org.kepler.authentication.ProxyRepository
 
pruneDependencies() - Method in class ptolemy.actor.AtomicActor
Deprecated.
There is no need to override this method anymore. Just call removeDependency() in preinitialize().
pruneUntypedObjects() - Method in class org.kepler.sms.SemanticTypeManager
Removes all objects from this manager that have no associated types
PSNR - Class in ptolemy.domains.sdf.lib.vq
This actor consumes an IntMatrixToken from each input port, and calculates the Power Signal to Noise Ratio (PSNR) between them.
PSNR(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.vq.PSNR
Construct an actor in the specified container with the specified name.
PtestWorkspace - Class in ptolemy.kernel.util.test
This object implements a ptolemy thread that obtains read permission to a workspace three times sequentially, then obtains write permission.
PtestWorkspace(String, Workspace) - Constructor for class ptolemy.kernel.util.test.PtestWorkspace
 
PtExecuteApplication - Class in ptolemy.actor.gui
This application executes Ptolemy II models specified on the command line.
PtExecuteApplication(String[]) - Constructor for class ptolemy.actor.gui.PtExecuteApplication
Parse the specified command-line arguments, creating models and running them.
PtFileChooser - Class in ptolemy.gui
A JFileChooser or FileDialog.
PtFileChooser(Frame, String, int) - Constructor for class ptolemy.gui.PtFileChooser
Construct a PtFileChooser.
PtFilenameFilter - Class in ptolemy.gui
A file filter that determines what files are displayed by the file dialog.
PtFilenameFilter() - Constructor for class ptolemy.gui.PtFilenameFilter
 
PtGUIUtilities - Class in ptolemy.gui
GUI Utilities.
PtinyApplication - Class in ptolemy.actor.gui.jnlp
A wrapper class that calls eventually calls ptolemy.vergil.VergilApplication for use with Java Network Launching Protocol (JNLP) aka Web Start.
PtinyApplication() - Constructor for class ptolemy.actor.gui.jnlp.PtinyApplication
 
PtinyKeplerApplication - Class in ptolemy.actor.gui.jnlp
Run the Ptiny version of Vergil inside a security sandbox.
PtinyKeplerApplication() - Constructor for class ptolemy.actor.gui.jnlp.PtinyKeplerApplication
 
PtinyOSDirector - Class in ptolemy.component.domains.ptinyos
Stub for component implementation of the PtinyOS model of computation.
PtinyOSDirector() - Constructor for class ptolemy.component.domains.ptinyos.PtinyOSDirector
 
PtinySandboxApplication - Class in ptolemy.actor.gui.jnlp
Run the Ptiny version of Vergil inside a security sandbox.
PtinySandboxApplication() - Constructor for class ptolemy.actor.gui.jnlp.PtinySandboxApplication
 
ptolemy.actor - package ptolemy.actor
Executable entities.
ptolemy.actor.continuous - package ptolemy.actor.continuous
The ptolemy.actor.continuous package.
ptolemy.actor.gui - package ptolemy.actor.gui
Ptolemy GUI components for actors and configurations.
ptolemy.actor.gui.exec - package ptolemy.actor.gui.exec
The ptolemy.actor.gui.exec package.
ptolemy.actor.gui.jnlp - package ptolemy.actor.gui.jnlp
The ptolemy.actor.gui.jnlp package.
ptolemy.actor.gui.properties - package ptolemy.actor.gui.properties
The ptolemy.actor.gui.properties package, used to augment the toolbar with user defined buttons.
ptolemy.actor.gui.ptjacl - package ptolemy.actor.gui.ptjacl
The ptolemy.actor.gui.ptjacl package.
ptolemy.actor.gui.python - package ptolemy.actor.gui.python
The ptolemy.actor.gui.python package.
ptolemy.actor.gui.run - package ptolemy.actor.gui.run
The ptolemy.actor.gui.run package.
ptolemy.actor.gui.style - package ptolemy.actor.gui.style
GUI Styles.
ptolemy.actor.gui.style.test.junit - package ptolemy.actor.gui.style.test.junit
The ptolemy.actor.gui.style.test.junit package.
ptolemy.actor.gui.syntax - package ptolemy.actor.gui.syntax
A syntax-directed editor.
ptolemy.actor.gui.test - package ptolemy.actor.gui.test
The ptolemy.actor.gui.test package.
ptolemy.actor.gui.test.junit - package ptolemy.actor.gui.test.junit
The ptolemy/actor/gui/test/junit package.
ptolemy.actor.injection - package ptolemy.actor.injection
Dependency injection to support implementation mappings for different platforms such as Android and Java SE.
ptolemy.actor.lib - package ptolemy.actor.lib
Polymorphic actor classes.
ptolemy.actor.lib.colt - package ptolemy.actor.lib.colt
Classes that use the Colt package to generate random numbers.
ptolemy.actor.lib.colt.test.junit - package ptolemy.actor.lib.colt.test.junit
The ptolemy.actor.lib.colt.test.junit package.
ptolemy.actor.lib.comm - package ptolemy.actor.lib.comm
Communications actors.
ptolemy.actor.lib.comm.test.junit - package ptolemy.actor.lib.comm.test.junit
The ptolemy.actor.lib.comm.test.junit package.
ptolemy.actor.lib.conversions - package ptolemy.actor.lib.conversions
Actors that convert between different types.
ptolemy.actor.lib.conversions.json - package ptolemy.actor.lib.conversions.json
The ptolemy.actor.lib.conversions.json package.
ptolemy.actor.lib.conversions.json.test.junit - package ptolemy.actor.lib.conversions.json.test.junit
The ptolemy.actor.lib.conversions.json.test.junit package.
ptolemy.actor.lib.conversions.test.junit - package ptolemy.actor.lib.conversions.test.junit
The ptolemy.actor.lib.conversions.test.junit package.
ptolemy.actor.lib.gem5 - package ptolemy.actor.lib.gem5
Actors for integration of Ptolemy II with gem5 architectural simulator.
ptolemy.actor.lib.gui - package ptolemy.actor.lib.gui
The ptolemy.actor.lib.gui package.
ptolemy.actor.lib.gui.test.junit - package ptolemy.actor.lib.gui.test.junit
The ptolemy.actor.lib.gui.test.junit package.
ptolemy.actor.lib.hoc - package ptolemy.actor.lib.hoc
Higher Order Component Classes.
ptolemy.actor.lib.hoc.test - package ptolemy.actor.lib.hoc.test
Higher Order Component Classes.
ptolemy.actor.lib.hoc.test.junit - package ptolemy.actor.lib.hoc.test.junit
The ptolemy.actor.lib.hoc.test.junit package.
ptolemy.actor.lib.image - package ptolemy.actor.lib.image
Actors that manipulate images.
ptolemy.actor.lib.image.test.junit - package ptolemy.actor.lib.image.test.junit
The ptolemy.actor.lib.image.test.junit package.
ptolemy.actor.lib.io - package ptolemy.actor.lib.io
The ptolemy.actor.lib.io package.
ptolemy.actor.lib.io.test.junit - package ptolemy.actor.lib.io.test.junit
The ptolemy.actor.lib.io.test.junit package.
ptolemy.actor.lib.logic - package ptolemy.actor.lib.logic
The ptolemy.actor.lib.logic package.
ptolemy.actor.lib.logic.test.junit - package ptolemy.actor.lib.logic.test.junit
The ptolemy.actor.lib.logic.test.junit package.
ptolemy.actor.lib.python - package ptolemy.actor.lib.python
The ptolemy.actor.lib.python package.
ptolemy.actor.lib.python.test.junit - package ptolemy.actor.lib.python.test.junit
The ptolemy.actor.lib.python.test.junit package.
ptolemy.actor.lib.r - package ptolemy.actor.lib.r
The ptolemy.actor.lib.r package.
ptolemy.actor.lib.r.test.junit - package ptolemy.actor.lib.r.test.junit
The ptolemy/actor/lib/r/test/junit package.
ptolemy.actor.lib.string - package ptolemy.actor.lib.string
The ptolemy.actor.lib.string package.
ptolemy.actor.lib.string.test - package ptolemy.actor.lib.string.test
The ptolemy.actor.lib.string.test package.
ptolemy.actor.lib.string.test.junit - package ptolemy.actor.lib.string.test.junit
The ptolemy.actor.lib.string.test.junit package.
ptolemy.actor.lib.test - package ptolemy.actor.lib.test
The ptolemy.actor.lib.test package.
ptolemy.actor.lib.test.junit - package ptolemy.actor.lib.test.junit
The ptolemy.actor.lib.test.junit package.
ptolemy.actor.lib.tutorial - package ptolemy.actor.lib.tutorial
The ptolemy/actor/lib/tutorial package.
ptolemy.actor.lib.xslt - package ptolemy.actor.lib.xslt
The ptolemy.actor.lib.xslt package.
ptolemy.actor.lib.xslt.test.junit - package ptolemy.actor.lib.xslt.test.junit
The ptolemy.actor.lib.xslt.test.junit package.
ptolemy.actor.parameters - package ptolemy.actor.parameters
The ptolemy.actor.parameters package.
ptolemy.actor.parameters.test - package ptolemy.actor.parameters.test
The ptolemy.actor.parameters.test package.
ptolemy.actor.parameters.test.junit - package ptolemy.actor.parameters.test.junit
The ptolemy.actor.parameters.test.junit package.
ptolemy.actor.process - package ptolemy.actor.process
Process oriented actor classes.
ptolemy.actor.process.test - package ptolemy.actor.process.test
The ptolemy.actor.process.test package.
ptolemy.actor.process.test.junit - package ptolemy.actor.process.test.junit
The ptolemy.actor.process.test.junit package.
ptolemy.actor.sched - package ptolemy.actor.sched
Schedule related classes.
ptolemy.actor.sched.test.junit - package ptolemy.actor.sched.test.junit
The ptolemy.actor.sched.test.junit package.
ptolemy.actor.test - package ptolemy.actor.test
The ptolemy.actor.test package.
ptolemy.actor.test.junit - package ptolemy.actor.test.junit
The ptolemy.actor.test.junit package.
ptolemy.actor.util - package ptolemy.actor.util
Actor utilities.
ptolemy.actor.util.test - package ptolemy.actor.util.test
The ptolemy.actor.util.test package.
ptolemy.actor.util.test.junit - package ptolemy.actor.util.test.junit
The ptolemy.actor.util.test.junit package.
ptolemy.chic - package ptolemy.chic
The ptolemy.chic package.
ptolemy.component - package ptolemy.component
The ptolemy.component package.
ptolemy.component.domains.ptinyos - package ptolemy.component.domains.ptinyos
The ptolemy.component.domains.ptinyos package.
ptolemy.component.test - package ptolemy.component.test
The ptolemy.component.test package.
ptolemy.configs.test - package ptolemy.configs.test
The ptolemy.configs.test package.
ptolemy.configs.test.junit - package ptolemy.configs.test.junit
The ptolemy.configs.test.junit package.
ptolemy.data - package ptolemy.data
Packages for manipulating data that passes between actors.
ptolemy.data.expr - package ptolemy.data.expr
The Ptolemy II Expression Language.
ptolemy.data.expr.test - package ptolemy.data.expr.test
The ptolemy.data.expr.test package.
ptolemy.data.expr.test.junit - package ptolemy.data.expr.test.junit
The ptolemy.data.expr.test.junit package.
ptolemy.data.test - package ptolemy.data.test
The ptolemy.data.test package.
ptolemy.data.test.junit - package ptolemy.data.test.junit
The ptolemy.data.test.junit package.
ptolemy.data.type - package ptolemy.data.type
The type system.
ptolemy.data.type.test - package ptolemy.data.type.test
The ptolemy.data.type.test package.
ptolemy.data.type.test.junit - package ptolemy.data.type.test.junit
The ptolemy.data.type.test.junit package.
ptolemy.data.unit - package ptolemy.data.unit
The unit system.
ptolemy.data.unit.test.junit - package ptolemy.data.unit.test.junit
The ptolemy.data.unit.test.junit package.
ptolemy.demo.PLC.test.junit - package ptolemy.demo.PLC.test.junit
The ptolemy/demo/PLC/test/junit package.
ptolemy.demo.Quarry.test.junit - package ptolemy.demo.Quarry.test.junit
The ptolemy/demo/Quarry/test/junit package.
ptolemy.demo.test.junit - package ptolemy.demo.test.junit
The ptolemy.demo.test.junit package.
ptolemy.domains.continuous.kernel - package ptolemy.domains.continuous.kernel
The Continuous domain kernel.
ptolemy.domains.continuous.kernel.solver - package ptolemy.domains.continuous.kernel.solver
The Continuous domain solvers.
ptolemy.domains.continuous.lib - package ptolemy.domains.continuous.lib
The ptolemy.domains.continuous.lib package.
ptolemy.domains.continuous.lib.test.junit - package ptolemy.domains.continuous.lib.test.junit
The ptolemy.domains.continuous.lib.test.junit package.
ptolemy.domains.continuous.test.junit - package ptolemy.domains.continuous.test.junit
The ptolemy.domains.continuous.test.junit package.
ptolemy.domains.ddf.kernel - package ptolemy.domains.ddf.kernel
Discrete Data Flow (DDF) Kernel.
ptolemy.domains.ddf.kernel.test.junit - package ptolemy.domains.ddf.kernel.test.junit
The ptolemy.domains.ddf.kernel.test.junit package.
ptolemy.domains.ddf.lib - package ptolemy.domains.ddf.lib
Discrete Data Flow (DDF) actors.
ptolemy.domains.ddf.lib.test.junit - package ptolemy.domains.ddf.lib.test.junit
The ptolemy.domains.ddf.lib.test.junit package.
ptolemy.domains.ddf.test.junit - package ptolemy.domains.ddf.test.junit
The ptolemy.domains.ddf.test.junit package.
ptolemy.domains.de.demo.SmartSender - package ptolemy.domains.de.demo.SmartSender
The ptolemy.domains.de.demo.SmartSender package.
ptolemy.domains.de.kernel - package ptolemy.domains.de.kernel
The ptolemy.domains.de.kernel package.
ptolemy.domains.de.kernel.test.junit - package ptolemy.domains.de.kernel.test.junit
The ptolemy.domains.de.kernel.test.junit package.
ptolemy.domains.de.lib - package ptolemy.domains.de.lib
The ptolemy.domains.de.lib package.
ptolemy.domains.de.lib.test - package ptolemy.domains.de.lib.test
The ptolemy.domains.de.lib.test package.
ptolemy.domains.de.lib.test.junit - package ptolemy.domains.de.lib.test.junit
The ptolemy.domains.de.lib.test.junit package.
ptolemy.domains.de.test - package ptolemy.domains.de.test
The ptolemy.domains.de.test package.
ptolemy.domains.de.test.junit - package ptolemy.domains.de.test.junit
The ptolemy.domains.de.test.junit package.
ptolemy.domains.modal.kernel - package ptolemy.domains.modal.kernel
The ptolemy.domains.modal.kernel package.
ptolemy.domains.modal.kernel.ia - package ptolemy.domains.modal.kernel.ia
Support for Interface Automatons.
ptolemy.domains.modal.kernel.ia.test.junit - package ptolemy.domains.modal.kernel.ia.test.junit
The ptolemy.domains.modal.kernel.ia.test.junit package.
ptolemy.domains.modal.kernel.test - package ptolemy.domains.modal.kernel.test
The ptolemy.domains.modal.kernel.test package.
ptolemy.domains.modal.kernel.test.junit - package ptolemy.domains.modal.kernel.test.junit
The ptolemy.domains.modal.kernel.test.junit package.
ptolemy.domains.modal.modal - package ptolemy.domains.modal.modal
The ptolemy.domains.modal.modal package.
ptolemy.domains.modal.modal.test.junit - package ptolemy.domains.modal.modal.test.junit
The ptolemy.domains.modal.modal.test.junit package.
ptolemy.domains.modal.test.junit - package ptolemy.domains.modal.test.junit
The ptolemy.domains.modal.test.junit package.
ptolemy.domains.pn.demo.QR - package ptolemy.domains.pn.demo.QR
 
ptolemy.domains.pn.kernel - package ptolemy.domains.pn.kernel
The Kahn-MacQueen process network domain.
ptolemy.domains.pn.kernel.event - package ptolemy.domains.pn.kernel.event
The ptolemy.domains.pn.kernel.event package.
ptolemy.domains.pn.kernel.event.test - package ptolemy.domains.pn.kernel.event.test
The ptolemy.domains.pn.kernel.event.test package.
ptolemy.domains.pn.kernel.event.test.junit - package ptolemy.domains.pn.kernel.event.test.junit
The ptolemy.domains.pn.kernel.event.test.junit package.
ptolemy.domains.pn.kernel.test - package ptolemy.domains.pn.kernel.test
The ptolemy.domains.pn.kernel.test package.
ptolemy.domains.pn.kernel.test.junit - package ptolemy.domains.pn.kernel.test.junit
The ptolemy.domains.pn.kernel.test.junit package.
ptolemy.domains.pn.lib - package ptolemy.domains.pn.lib
Actors for the Kahn-MacQueen process network domain.
ptolemy.domains.pn.test.junit - package ptolemy.domains.pn.test.junit
The ptolemy.domains.pn.test.junit package.
ptolemy.domains.sdf.demo.Butterfly - package ptolemy.domains.sdf.demo.Butterfly
The ptolemy.domains.sdf.demo.Butterfly package.
ptolemy.domains.sdf.demo.HTVQ - package ptolemy.domains.sdf.demo.HTVQ
The ptolemy.domains.sdf.demo.HTVQ package.
ptolemy.domains.sdf.demo.OrthogonalCom - package ptolemy.domains.sdf.demo.OrthogonalCom
The ptolemy.domains.sdf.demo.OrthogonalCom package.
ptolemy.domains.sdf.demo.Sketch - package ptolemy.domains.sdf.demo.Sketch
The ptolemy.domains.sdf.demo.Sketch package.
ptolemy.domains.sdf.kernel - package ptolemy.domains.sdf.kernel
The ptolemy.domains.sdf.kernel package.
ptolemy.domains.sdf.kernel.test - package ptolemy.domains.sdf.kernel.test
The ptolemy.domains.sdf.kernel.test package.
ptolemy.domains.sdf.kernel.test.junit - package ptolemy.domains.sdf.kernel.test.junit
The ptolemy.domains.sdf.kernel.test.junit package.
ptolemy.domains.sdf.lib - package ptolemy.domains.sdf.lib
The ptolemy.domains.sdf.lib package.
ptolemy.domains.sdf.lib.test - package ptolemy.domains.sdf.lib.test
The ptolemy.domains.sdf.lib.test package.
ptolemy.domains.sdf.lib.test.junit - package ptolemy.domains.sdf.lib.test.junit
The ptolemy.domains.sdf.lib.test.junit package.
ptolemy.domains.sdf.lib.vq - package ptolemy.domains.sdf.lib.vq
The ptolemy.domains.sdf.lib.vq package.
ptolemy.domains.sdf.lib.vq.test.junit - package ptolemy.domains.sdf.lib.vq.test.junit
The ptolemy.domains.sdf.lib.vq.test.junit package.
ptolemy.domains.sdf.optimize - package ptolemy.domains.sdf.optimize
The ptolemy.domains.sdf.optimize package.
ptolemy.domains.sdf.optimize.lib - package ptolemy.domains.sdf.optimize.lib
The ptolemy.domains.sdf.optimize.lib package.
ptolemy.domains.sdf.optimize.test.junit - package ptolemy.domains.sdf.optimize.test.junit
The ptolemy.domains.sdf.optimize.test.junit package.
ptolemy.domains.sdf.test.junit - package ptolemy.domains.sdf.test.junit
The ptolemy.domains.sdf.test.junit package.
ptolemy.domains.test.junit - package ptolemy.domains.test.junit
The ptolemy.domains.test.junit package.
ptolemy.graph - package ptolemy.graph
Algorithms for manipulation and analyzing mathematical graphs.
ptolemy.graph.analysis - package ptolemy.graph.analysis
Graph analysis classes.
ptolemy.graph.analysis.analyzer - package ptolemy.graph.analysis.analyzer
The ptolemy.graph.analysis.analyzer package.
ptolemy.graph.analysis.analyzer.test.junit - package ptolemy.graph.analysis.analyzer.test.junit
The ptolemy.graph.analysis.analyzer.test.junit package.
ptolemy.graph.analysis.strategy - package ptolemy.graph.analysis.strategy
The ptolemy.graph.analysis.strategy package.
ptolemy.graph.analysis.strategy.test.junit - package ptolemy.graph.analysis.strategy.test.junit
The ptolemy.graph.analysis.strategy.test.junit package.
ptolemy.graph.analysis.test.junit - package ptolemy.graph.analysis.test.junit
The ptolemy.graph.analysis.test.junit package.
ptolemy.graph.mapping - package ptolemy.graph.mapping
The ptolemy.graph.mapping package.
ptolemy.graph.mapping.test.junit - package ptolemy.graph.mapping.test.junit
The ptolemy.graph.mapping.test.junit package.
ptolemy.graph.sched - package ptolemy.graph.sched
The ptolemy.graph.sched package.
ptolemy.graph.sched.test.junit - package ptolemy.graph.sched.test.junit
The ptolemy.graph.sched.test.junit package.
ptolemy.graph.test - package ptolemy.graph.test
The ptolemy.graph.test package.
ptolemy.graph.test.junit - package ptolemy.graph.test.junit
The ptolemy.graph.test.junit package.
ptolemy.gui - package ptolemy.gui
Graphical User Interface classes.
ptolemy.gui.demo - package ptolemy.gui.demo
The ptolemy/gui/demo package.
ptolemy.gui.test - package ptolemy.gui.test
The ptolemy.gui.test package.
ptolemy.gui.test.junit - package ptolemy.gui.test.junit
The ptolemy.gui.test.junit package.
ptolemy.kernel - package ptolemy.kernel
Kernel classes that provide Entity, Port and Relations.
ptolemy.kernel.attributes - package ptolemy.kernel.attributes
Kernel attributes.
ptolemy.kernel.attributes.test.junit - package ptolemy.kernel.attributes.test.junit
The ptolemy.kernel.attributes.test.junit package.
ptolemy.kernel.test - package ptolemy.kernel.test
The ptolemy.kernel.test package.
ptolemy.kernel.test.junit - package ptolemy.kernel.test.junit
The ptolemy.kernel.test.junit package.
ptolemy.kernel.undo - package ptolemy.kernel.undo
Undo/Redo management.
ptolemy.kernel.undo.test - package ptolemy.kernel.undo.test
The ptolemy.kernel.undo.test package.
ptolemy.kernel.undo.test.junit - package ptolemy.kernel.undo.test.junit
The ptolemy.kernel.undo.test.junit package.
ptolemy.kernel.util - package ptolemy.kernel.util
Kernel utility classes.
ptolemy.kernel.util.test - package ptolemy.kernel.util.test
The ptolemy.kernel.util.test package.
ptolemy.kernel.util.test.junit - package ptolemy.kernel.util.test.junit
The ptolemy.kernel.util.test.junit package.
ptolemy.kernel.util.test.system - package ptolemy.kernel.util.test.system
 
ptolemy.kernel.util.test.system.junit - package ptolemy.kernel.util.test.system.junit
JUnit driver for system tests in kernel.util that use packages outside of kernel.util.
ptolemy.math - package ptolemy.math
Math classes.
ptolemy.math.test - package ptolemy.math.test
The ptolemy.math.test package.
ptolemy.math.test.junit - package ptolemy.math.test.junit
The ptolemy.math.test.junit package.
ptolemy.matlab - package ptolemy.matlab
The ptolemy.matlab package.
ptolemy.matlab.test - package ptolemy.matlab.test
The ptolemy.matlab.test package.
ptolemy.media - package ptolemy.media
Sound and Image classes.
ptolemy.media.javasound - package ptolemy.media.javasound
The ptolemy.media.javasound package.
ptolemy.media.javasound.demo.LiveSines - package ptolemy.media.javasound.demo.LiveSines
The ptolemy.media.javasound.demo.LiveSines package.
ptolemy.media.javasound.demo.ReaderProcessWriter - package ptolemy.media.javasound.demo.ReaderProcessWriter
The ptolemy.media.javasound.demo.ReaderProcessWriter package.
ptolemy.media.javasound.demo.Sines - package ptolemy.media.javasound.demo.Sines
The ptolemy.media.javasound.demo.Sines package.
ptolemy.media.javasound.demo.SoftClip - package ptolemy.media.javasound.demo.SoftClip
The ptolemy.media.javasound.demo.SoftClip package.
ptolemy.media.test.junit - package ptolemy.media.test.junit
The ptolemy.media.test.junit package.
ptolemy.moml - package ptolemy.moml
Modeling Markup Language classes.
ptolemy.moml.filter - package ptolemy.moml.filter
MoML backward compatibility filters.
ptolemy.moml.filter.test - package ptolemy.moml.filter.test
The ptolemy.moml.filter.test package.
ptolemy.moml.filter.test.junit - package ptolemy.moml.filter.test.junit
The ptolemy.moml.filter.test.junit package.
ptolemy.moml.test - package ptolemy.moml.test
The ptolemy.moml.test package.
ptolemy.moml.test.junit - package ptolemy.moml.test.junit
The ptolemy.moml.test.junit package.
ptolemy.moml.unit - package ptolemy.moml.unit
Unit System Modeling Markup Language classes.
ptolemy.moml.unit.test.junit - package ptolemy.moml.unit.test.junit
The ptolemy.moml.unit.test.junit package.
ptolemy.plot - package ptolemy.plot
The ptolemy.plot package.
ptolemy.plot.compat - package ptolemy.plot.compat
Backward compatibility with xgraph and pxgraph.
ptolemy.plot.demo - package ptolemy.plot.demo
The ptolemy/plot/demo package.
ptolemy.plot.plotml - package ptolemy.plot.plotml
The ptolemy.plot.plotml package.
ptolemy.plot.test.junit - package ptolemy.plot.test.junit
The ptolemy.plot.test.junit package.
ptolemy.util - package ptolemy.util
The ptolemy.util package.
ptolemy.util.test - package ptolemy.util.test
The ptolemy.util.test package.
ptolemy.util.test.junit - package ptolemy.util.test.junit
The util/testsuite/junit/ package.
ptolemy.util.test.travis.junit - package ptolemy.util.test.travis.junit
The ptolemy/util/test/test/junit package.
ptolemy.vergil - package ptolemy.vergil
The Ptolemy II GUI.
ptolemy.vergil.actor - package ptolemy.vergil.actor
Actor specific GUI packages.
ptolemy.vergil.actor.lib - package ptolemy.vergil.actor.lib
Vergil specific actors.
ptolemy.vergil.actor.lib.test.junit - package ptolemy.vergil.actor.lib.test.junit
The ptolemy.vergil.actor.lib.test.junit package.
ptolemy.vergil.basic - package ptolemy.vergil.basic
Basic GUI classes.
ptolemy.vergil.basic.export - package ptolemy.vergil.basic.export
The ptolemy/vergil/basic/export package.
ptolemy.vergil.basic.export.html - package ptolemy.vergil.basic.export.html
The ptolemy.vergil.basic.export.html package.
ptolemy.vergil.basic.export.html.test.junit - package ptolemy.vergil.basic.export.html.test.junit
The ptolemy/vergil/basic/export/html/test/junit package.
ptolemy.vergil.basic.export.test.junit - package ptolemy.vergil.basic.export.test.junit
The ptolemy/vergil/basic/export/test/junit package.
ptolemy.vergil.basic.export.web - package ptolemy.vergil.basic.export.web
The ptolemy.vergil.basic.export.web package.
ptolemy.vergil.basic.layout - package ptolemy.vergil.basic.layout
Classes used to place entities and relations and to route connections in Vergil.
ptolemy.vergil.basic.layout.kieler - package ptolemy.vergil.basic.layout.kieler
Classes used to layout entities and relations in Vergil that use the KIELER layout algorithm.
ptolemy.vergil.basic.layout.kieler.test.junit - package ptolemy.vergil.basic.layout.kieler.test.junit
The ptolemy/vergil/basic/layout/kieler/test/junit package.
ptolemy.vergil.basic.test.junit - package ptolemy.vergil.basic.test.junit
The ptolemy/vergil/basic/test/junit package.
ptolemy.vergil.debugger - package ptolemy.vergil.debugger
Ptolemy II Debugger Interface.
ptolemy.vergil.icon - package ptolemy.vergil.icon
Vergil icons.
ptolemy.vergil.icon.test.junit - package ptolemy.vergil.icon.test.junit
The ptolemy.vergil.toolbox.test.junit package.
ptolemy.vergil.kernel - package ptolemy.vergil.kernel
Vergil kernel classes.
ptolemy.vergil.kernel.attributes - package ptolemy.vergil.kernel.attributes
Vergil shape and text graphical attributes.
ptolemy.vergil.kernel.attributes.test.junit - package ptolemy.vergil.kernel.attributes.test.junit
The ptolemy.vergil.kernel.attributes.test.junit package.
ptolemy.vergil.modal - package ptolemy.vergil.modal
Finite State Machine Editor.
ptolemy.vergil.modal.ia - package ptolemy.vergil.modal.ia
Vergil Finite State Machine Interface Automata classes.
ptolemy.vergil.modal.modal - package ptolemy.vergil.modal.modal
The ptolemy.vergil.modal.modal package.
ptolemy.vergil.modal.modal.test.junit - package ptolemy.vergil.modal.modal.test.junit
The ptolemy.vergil.modal.modal.test.junit package.
ptolemy.vergil.pdfrenderer - package ptolemy.vergil.pdfrenderer
The ptolemy.vergil.pdfrenderer package.
ptolemy.vergil.test.junit - package ptolemy.vergil.test.junit
The ptolemy.vergil.test.junit package.
ptolemy.vergil.toolbox - package ptolemy.vergil.toolbox
Vergil factories.
ptolemy.vergil.tree - package ptolemy.vergil.tree
Ptolemy Model Tree Editor.
ptolemy.vergil.unit - package ptolemy.vergil.unit
Ptolemy GUI components for the Unit system.
PTOLEMY_TYPE_PATTERN - Static variable in class org.kepler.data.datasource.dataturbine.DataTurbineWriter
Regex pattern of ptolemy type in user info field.
PtolemyApplet - Class in ptolemy.actor.gui
This class provides a convenient way to make applets out of Ptolemy II models.
PtolemyApplet() - Constructor for class ptolemy.actor.gui.PtolemyApplet
 
PtolemyApplication - Class in ptolemy.actor.gui
This application opens run control panels for models specified on the command line.
PtolemyApplication(String[]) - Constructor for class ptolemy.actor.gui.PtolemyApplication
Parse the specified command-line arguments, creating models and frames to interact with them.
PtolemyApplication(String) - Constructor for class ptolemy.actor.gui.PtolemyApplication
Parse the specified command-line arguments, creating models and frames to interact with them.
PtolemyDialog - Class in ptolemy.actor.gui
Ptolemy specific dialog.
PtolemyDialog(String, DialogTableau, Frame, Entity, Configuration) - Constructor for class ptolemy.actor.gui.PtolemyDialog
Construct a PtolemyDialog.
PtolemyEffigy - Class in ptolemy.actor.gui
An effigy for a Ptolemy II model.
PtolemyEffigy(Workspace) - Constructor for class ptolemy.actor.gui.PtolemyEffigy
Create a new effigy in the specified workspace with an empty string for its name.
PtolemyEffigy(CompositeEntity, String) - Constructor for class ptolemy.actor.gui.PtolemyEffigy
Create a new effigy in the given container with the given name.
PtolemyEffigy.Factory - Class in ptolemy.actor.gui
A factory for creating new Ptolemy effigies.
PtolemyEffigy.FactoryWithoutNew - Class in ptolemy.actor.gui
A factory for creating new Ptolemy effigies, but without the capability of creating a new blank effigy.
PtolemyFormEditor - Class in ptolemy.actor.gui.run
A customized version of the FormEditor class by Michael Connor (mlconnor@yahoo.com).
PtolemyFormEditor(RunLayoutFrame, ContainerLayout, Container) - Constructor for class ptolemy.actor.gui.run.PtolemyFormEditor
Construct a new form editor.
PtolemyFrame - Class in ptolemy.actor.gui
This is a top-level window for Ptolemy models with a menubar and status bar.
PtolemyFrame(NamedObj) - Constructor for class ptolemy.actor.gui.PtolemyFrame
Construct a frame associated with the specified Ptolemy II model.
PtolemyFrame(NamedObj, Tableau) - Constructor for class ptolemy.actor.gui.PtolemyFrame
Construct a frame associated with the specified Ptolemy II model or object.
PtolemyInjector - Class in ptolemy.actor.injection
PtolemyInjector contains a static reference to the Injector loaded with Ptolemy Modules for the given target platform.
PtolemyInjector() - Constructor for class ptolemy.actor.injection.PtolemyInjector
 
PtolemyLayoutAction - Class in ptolemy.vergil.basic
Trigger the Ptolemy place and route automatic dataflow layout algorithm from withing the Vergil GUI.
PtolemyLayoutAction() - Constructor for class ptolemy.vergil.basic.PtolemyLayoutAction
 
PtolemyListCellRenderer - Class in ptolemy.vergil.toolbox
A list cell renderer for Ptolemy objects.
PtolemyListCellRenderer() - Constructor for class ptolemy.vergil.toolbox.PtolemyListCellRenderer
 
PtolemyMenuFactory - Class in ptolemy.vergil.toolbox
A menu factory that contains a list of item factories.
PtolemyMenuFactory(GraphController) - Constructor for class ptolemy.vergil.toolbox.PtolemyMenuFactory
Create a new menu factory that contains no menu item factories.
PtolemyModelUtil - Class in ptolemy.vergil.basic.layout.kieler
Utility class for accessing properties of a Ptolemy model in the context of automatic layout.
PtolemyModelUtil() - Constructor for class ptolemy.vergil.basic.layout.kieler.PtolemyModelUtil
 
PtolemyModule - Class in ptolemy.actor.injection
PtolemyModule loads interface to implementation mappings from the provided ResourceBundle.
PtolemyModule(ClassLoader, ResourceBundle) - Constructor for class ptolemy.actor.injection.PtolemyModule
Create a new instance of the PtolemyModule based on the provided moduleBundle, and specifying a specific class loader that should be used to load the implementation classes.
PtolemyModule(ResourceBundle) - Constructor for class ptolemy.actor.injection.PtolemyModule
Create a new instance of the PtolemyModule based on the provided moduleBundle.
PtolemyPreferences - Class in ptolemy.actor.gui
Default preferences definition for Vergil.
PtolemyPreferences(NamedObj, String) - Constructor for class ptolemy.actor.gui.PtolemyPreferences
Construct an instance of the preferences attribute.
PtolemyQuery - Class in ptolemy.actor.gui
This class is a query dialog box with various entries for setting the values of Ptolemy II attributes that implement the Settable interface and have visibility FULL.
PtolemyQuery(NamedObj) - Constructor for class ptolemy.actor.gui.PtolemyQuery
Construct a panel with no queries in it and with the specified change handler.
PtolemyQuery.ActionableEntry - Class in ptolemy.actor.gui
Panel containing an entry box and button that performs the action specified by an Actionable.
PtolemyQuery.HierarchicalConfigurer - Class in ptolemy.actor.gui
Panel containing an entry box and button that opens another query to edit the parameters of a specified parameter.
PtolemyTableauFactory - Class in ptolemy.actor.gui
This is an intermediate container tableau factory that is designed to contain all tableau factories in a configuration that are capable of displaying a Ptolemy II model.
PtolemyTableauFactory(NamedObj, String) - Constructor for class ptolemy.actor.gui.PtolemyTableauFactory
Create a factory with the given name and container.
PtolemyThread - Class in ptolemy.kernel.util
PtolemyThread PtolemyThread extends Thread by adding rudimentary debugging capability.
PtolemyThread() - Constructor for class ptolemy.kernel.util.PtolemyThread
Construct a new PtolemyThread object.
PtolemyThread(Runnable) - Constructor for class ptolemy.kernel.util.PtolemyThread
Construct a new PtolemyThread object.
PtolemyThread(Runnable, String) - Constructor for class ptolemy.kernel.util.PtolemyThread
Construct a new PtolemyThread object.
PtolemyThread(String) - Constructor for class ptolemy.kernel.util.PtolemyThread
Construct a new PtolemyThread object.
PtolemyThread(ThreadGroup, Runnable) - Constructor for class ptolemy.kernel.util.PtolemyThread
Construct a new PtolemyThread object.
PtolemyThread(ThreadGroup, Runnable, String) - Constructor for class ptolemy.kernel.util.PtolemyThread
Construct a new PtolemyThread object so that it has target as its run object, has the specified name as its name, and belongs to the thread group referred to by group.
PtolemyThread(ThreadGroup, String) - Constructor for class ptolemy.kernel.util.PtolemyThread
Construct a new PtolemyThread object.
PtolemyTransferable - Class in ptolemy.vergil.toolbox
A transferable object that contains a local JVM reference to a number of named objects.
PtolemyTransferable() - Constructor for class ptolemy.vergil.toolbox.PtolemyTransferable
Create a new transferable object that contains no objects.
PtolemyTreeCellRenderer - Class in ptolemy.vergil.tree
A tree cell renderer for Ptolemy objects.
PtolemyTreeCellRenderer() - Constructor for class ptolemy.vergil.tree.PtolemyTreeCellRenderer
Construct a tree cell renderer that shows the expression value of any object that implements Settable.
PtolemyTreeCellRenderer(boolean) - Constructor for class ptolemy.vergil.tree.PtolemyTreeCellRenderer
Construct a tree cell renderer that shows the expression value of any object that implements Settable.
PtParser - Class in ptolemy.data.expr
This file implements an expression parser for Ptolemy II using the JavaCC parser generator.
PtParser() - Constructor for class ptolemy.data.expr.PtParser
 
PtParser(InputStream) - Constructor for class ptolemy.data.expr.PtParser
Constructor with InputStream.
PtParser(InputStream, String) - Constructor for class ptolemy.data.expr.PtParser
Constructor with InputStream and supplied encoding
PtParser(Reader) - Constructor for class ptolemy.data.expr.PtParser
Constructor.
PtParser(PtParserTokenManager) - Constructor for class ptolemy.data.expr.PtParser
Constructor with generated Token Manager.
PtParserConstants - Interface in ptolemy.data.expr
Token literal values and constants.
PtParserTokenManager - Class in ptolemy.data.expr
Token Manager.
PtParserTokenManager(SimpleCharStream) - Constructor for class ptolemy.data.expr.PtParserTokenManager
Constructor.
PtParserTokenManager(SimpleCharStream, int) - Constructor for class ptolemy.data.expr.PtParserTokenManager
Constructor.
PtParserTreeConstants - Interface in ptolemy.data.expr
 
PTPLOT_RELEASE - Static variable in class ptolemy.plot.PlotBox
The version of PtPlot.
PTree - Class in ptolemy.vergil.tree
This class provides a tree view of a ptolemy model.
PTree(TreeModel) - Constructor for class ptolemy.vergil.tree.PTree
Create a new tree that is rooted at the given entity.
PTree(TreeModel, boolean) - Constructor for class ptolemy.vergil.tree.PTree
Create a new tree that is rooted at the given entity.
PTreeMenuCreator - Class in ptolemy.vergil.tree
A mouse listener that creates context menus for a PTree using menu item factories.
PTreeMenuCreator() - Constructor for class ptolemy.vergil.tree.PTreeMenuCreator
Create a new menu factory that contains no menu item factories.
Publisher - Class in ptolemy.actor.lib
This actor publishes input tokens on a named channel.
Publisher(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Publisher
Construct a publisher with the specified container and name.
PublisherNonStrictTest - Class in ptolemy.actor.lib
This actor publishes input tokens on a named channel and compares the inputs against the value specified by the correctValues parameter.
PublisherNonStrictTest(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.PublisherNonStrictTest
Construct a publisher with the specified container and name.
PublisherPort - Class in ptolemy.actor
This is a specialized output port that publishes data sent through it on the specified named channel.
PublisherPort(ComponentEntity, String) - Constructor for class ptolemy.actor.PublisherPort
Construct a publisher port with the specified name and container.
publishers() - Method in class ptolemy.actor.lib.Subscriber
Return a Set of Publishers that are connected to this Subscriber.
PublisherTest - Class in ptolemy.actor.lib
This actor publishes input tokens on a named channel and compares the inputs against the value specified by the correctValues parameter.
PublisherTest(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.PublisherTest
Construct a publisher with the specified container and name.
PubSubPort - Class in ptolemy.actor
An abstract base class for publisher and subscriber ports.
PubSubPort(ComponentEntity, String) - Constructor for class ptolemy.actor.PubSubPort
Construct a subscriber port with a containing actor and a name.
Pulse - Class in ptolemy.actor.lib
Produce a pulse with a shape specified by the parameters.
Pulse(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Pulse
Construct an actor with the specified container and name.
purgeAllModelRecords() - Static method in class ptolemy.moml.MoMLParser
Purge all records of models opened.
purgeModelRecord(URL) - Static method in class ptolemy.moml.MoMLParser
Purge any record of a model opened from the specified URL.
purgeModelRecord(String) - Static method in class ptolemy.moml.MoMLParser
Purge any record of a model opened from the specified file name.
push(UndoAction) - Method in class ptolemy.kernel.undo.UndoStackAttribute
Push an action to the undo stack, or if we are executing an undo, onto the redo stack.
pushNode(Node) - Method in class ptolemy.data.expr.JJTMatrixParserState
 
pushNode(Node) - Method in class ptolemy.data.expr.JJTPtParserState
 
pushUndoEntry(String) - Method in class ptolemy.moml.UndoContext
Push the passed in MoML onto the stack of element undo entries.
put(boolean) - Method in class org.json.JSONArray
Append a boolean value.
put(Collection) - Method in class org.json.JSONArray
Put a value in the JSONArray, where the value will be a JSONArray which is produced from a Collection.
put(double) - Method in class org.json.JSONArray
Append a double value.
put(int) - Method in class org.json.JSONArray
Append an int value.
put(long) - Method in class org.json.JSONArray
Append an long value.
put(Map) - Method in class org.json.JSONArray
Put a value in the JSONArray, where the value will be a JSONObject which is produced from a Map.
put(Object) - Method in class org.json.JSONArray
Append an object value.
put(int, boolean) - Method in class org.json.JSONArray
Put or replace a boolean value in the JSONArray.
put(int, Collection) - Method in class org.json.JSONArray
Put a value in the JSONArray, where the value will be a JSONArray which is produced from a Collection.
put(int, double) - Method in class org.json.JSONArray
Put or replace a double value.
put(int, int) - Method in class org.json.JSONArray
Put or replace an int value.
put(int, long) - Method in class org.json.JSONArray
Put or replace a long value.
put(int, Map) - Method in class org.json.JSONArray
Put a value in the JSONArray, where the value will be a JSONObject which is produced from a Map.
put(int, Object) - Method in class org.json.JSONArray
Put or replace an object value in the JSONArray.
put(String, boolean) - Method in class org.json.JSONObject
Put a key/boolean pair in the JSONObject.
put(String, Collection) - Method in class org.json.JSONObject
Put a key/value pair in the JSONObject, where the value will be a JSONArray which is produced from a Collection.
put(String, double) - Method in class org.json.JSONObject
Put a key/double pair in the JSONObject.
put(String, int) - Method in class org.json.JSONObject
Put a key/int pair in the JSONObject.
put(String, long) - Method in class org.json.JSONObject
Put a key/long pair in the JSONObject.
put(String, Map) - Method in class org.json.JSONObject
Put a key/value pair in the JSONObject, where the value will be a JSONObject which is produced from a Map.
put(String, Object) - Method in class org.json.JSONObject
Put a key/value pair in the JSONObject.
put(Object, KeplerLSID, String) - Method in class org.kepler.objectmanager.repository.EcogridRepository
put a file with a predetermined sessionid
put(Object, KeplerLSID, String) - Method in class org.kepler.objectmanager.repository.Repository
put an object into the repository with a predetermined sessionid
put(Token) - Method in class ptolemy.actor.AbstractReceiver
Put the specified token into this receiver.
put(Token) - Method in class ptolemy.actor.IntermediateReceiver
Forward the specified token to communication aspect specified in the constructor.
put(Token) - Method in class ptolemy.actor.Mailbox
Put a token into the mailbox.
put(Token) - Method in class ptolemy.actor.process.MailboxBoundaryReceiver
Put a token into this receiver.
put(Token) - Method in class ptolemy.actor.QueueReceiver
Put a token to the receiver.
put(Token) - Method in interface ptolemy.actor.Receiver
Put the specified token into this receiver.
put(Token) - Method in class ptolemy.actor.sched.FixedPointReceiver
If the specified token is non-null, then set the status of this receiver to known and present, and to contain the specified token.
put(Token) - Method in class ptolemy.actor.test.TestAbstractReceiver
Put the specified token into this receiver.
put(Object) - Method in class ptolemy.actor.util.CalendarQueue
Add an entry to the queue.
put(Object) - Method in class ptolemy.actor.util.FIFOQueue
Put an object in the queue and return true if this will not cause the capacity to be exceeded.
put(DEEvent) - Method in class ptolemy.domains.de.kernel.DECQEventQueue
Put an event into the event queue.
put(DEEvent) - Method in interface ptolemy.domains.de.kernel.DEEventQueue
Enqueue a DE event into the event queue.
put(Token) - Method in class ptolemy.domains.de.kernel.DEReceiver
Put a token into this receiver and post a trigger event to the director.
put(Token) - Method in class ptolemy.domains.modal.kernel.FSMReceiver
Put a token into this receiver.
put(Token) - Method in class ptolemy.domains.pn.kernel.PNQueueReceiver
Put a token on the queue contained in this receiver.
put(Object) - Method in class ptolemy.domains.sdf.kernel.ArrayFIFOQueue
Put an object in the queue and return true if this will not cause the capacity to be exceeded.
put(Token) - Method in class ptolemy.domains.sdf.kernel.SDFReceiver
Put a token to the receiver.
put(long[], String, Token) - Method in class ptolemy.matlab.Engine
Create a matlab variable using name and a Token.
put(String, String) - Method in class ptolemy.moml.filter.ClassChanges
Add a class to be filtered.
put(String, HashMap) - Method in class ptolemy.moml.filter.PortNameChanges
Add a class to be filtered and the old and new port names.
put(String, HashMap) - Method in class ptolemy.moml.filter.PropertyClassChanges
Add a class to be filtered and the old and new property class types.
put(String, String) - Method in class ptolemy.moml.filter.RemoveClasses
Add a class to be filtered for and its replacement if the class is found.
put(String, String) - Method in class ptolemy.moml.filter.RemoveGraphicalClasses
Add a class to be filtered for and its replacement if the class is found.
put(String, String) - Method in class ptolemy.moml.filter.RemoveNonPtinyClasses
Add a class to be filtered for and its replacement if the class is found.
put(String, Unit) - Method in class ptolemy.moml.unit.Bindings
Create a binding for a variable and Unit.
put(K, V) - Method in class ptolemy.util.MultiHashMap
Add the value to the collection associated with the specified key.
putArray(Token[], int) - Method in class ptolemy.actor.AbstractReceiver
Put a portion of the specified token array into this receiver.
putArray(Token[], int) - Method in interface ptolemy.actor.Receiver
Put a portion of the specified token array into this receiver.
putArray(Token[], int) - Method in class ptolemy.domains.modal.kernel.FSMReceiver
If the argument has one token, then put that token in the receiver.
putArray(Object[]) - Method in class ptolemy.domains.sdf.kernel.ArrayFIFOQueue
Put an array of objects in the queue and return true if this will not cause the capacity to be exceeded.
putArray(Object[], int) - Method in class ptolemy.domains.sdf.kernel.ArrayFIFOQueue
Put an array of objects in the queue and return true if this will not cause the capacity to be exceeded.
putArrayToAll(Token[], int, Receiver[]) - Method in class ptolemy.actor.AbstractReceiver
Put a sequence of tokens to all receivers in the specified array.
putArrayToAll(Token[], int, Receiver[]) - Method in interface ptolemy.actor.Receiver
Put a sequence of tokens to all receivers in the specified array.
putColumn(String, Column) - Method in class org.kepler.util.sql.Table
Add a new or replace an existing column with no foreign key or index.
putColumn(String, Column, String) - Method in class org.kepler.util.sql.Table
Add a new or replace an existing column with a default value.
putColumn(String, Column, String, String) - Method in class org.kepler.util.sql.Table
Add a new or replace an existing column.
putColumn(String, Column, String, String, String) - Method in class org.kepler.util.sql.Table
Add a new or replace an existing column.
putConstraint(String, String, String) - Method in class org.kepler.util.sql.Table
Add a new or replace an existing constraint.
putDebugProfile(Executable, DebugProfile) - Method in class ptolemy.vergil.debugger.DebugController
Add an actor to the set of actors that are being debugged.
putFile(String, String, String, int) - Static method in class org.kepler.objectmanager.cache.DataCacheManager
 
putForeignKey(String, String, String, String) - Method in class org.kepler.util.sql.Table
Add a new or replace an existing foreign key.
putIndex(String) - Method in class org.kepler.util.sql.Table
Add an index on one or more columns.
putIndex(String, String) - Method in class org.kepler.util.sql.Table
Add a new or replace an existing index.
putIndex(String, String, Table.IndexType) - Method in class org.kepler.util.sql.Table
Add a new or replace an index index specifying the type of index.
putInObjectManager(WorkflowRun) - Static method in class org.kepler.kar.handlers.WorkflowRunEntryHandler
Put run in ObjectManager, removing any previous version.
putInObjectManager(WorkflowRun) - Static method in class org.kepler.util.WorkflowRunUtil
Put run in ObjectManager, removing any previous version.
putOnce(String, Object) - Method in class org.json.JSONObject
Put a key/value pair in the JSONObject, but only if the key and the value are both non-null, and only if there is not already a member with that name.
putOpt(String, Object) - Method in class org.json.JSONObject
Put a key/value pair in the JSONObject, but only if the key and the value are both non-null.
putPath - Variable in class org.kepler.objectmanager.repository.Repository
 
putSamples(Object, double[][]) - Static method in class ptolemy.media.javasound.LiveSound
Play an array of audio samples.
putSamples(Object, double[][]) - Method in interface ptolemy.media.javasound.LiveSoundInterface
Play an array of audio samples.
putSamples(Object, double[][]) - Method in class ptolemy.media.javasound.LiveSoundJavaSE
Play an array of audio samples.
putSamples(double[][]) - Method in class ptolemy.media.javasound.SoundPlayback
Play an array of audio samples.
putSamples(double[][]) - Method in class ptolemy.media.javasound.SoundWriter
Append the audio data contained in putSamplesArray to an internal array.
putSamplesInt(int[][]) - Method in class ptolemy.media.javasound.SoundPlayback
Play an array of audio samples.
PUTSERVICETYPE - Static variable in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
 
putTable(String, Table) - Method in class org.kepler.util.sql.Schema
Add a new or change an existing table.
putToAll(Token, Receiver[]) - Method in class ptolemy.actor.AbstractReceiver
Put to all receivers in the specified array.
putToAll(Token, Receiver[]) - Method in interface ptolemy.actor.Receiver
Put a single token to all receivers in the specified array.
pv - Variable in class org.ecoinformatics.seek.gis.java_gis.Grid
 
pval - Variable in class com.numericsolutions.geomodeltools.DensityGridActor
 
PxgraphApplet - Class in ptolemy.plot.compat
An Applet that can plot data in pxgraph format from a URL.
PxgraphApplet() - Constructor for class ptolemy.plot.compat.PxgraphApplet
 
PxgraphApplication - Class in ptolemy.plot.compat
An application that can plot data in pxgraph format.
PxgraphApplication() - Constructor for class ptolemy.plot.compat.PxgraphApplication
Construct a plot with no command-line arguments.
PxgraphApplication(String[]) - Constructor for class ptolemy.plot.compat.PxgraphApplication
Construct a plot with the specified command-line arguments.
PxgraphApplication(Plot, String[]) - Constructor for class ptolemy.plot.compat.PxgraphApplication
Construct a plot with the specified command-line arguments and instance of Plot.
PxgraphParser - Class in ptolemy.plot.compat
This class provides backwards compatibility with an older plotting program, pxgraph.
PxgraphParser(Plot) - Constructor for class ptolemy.plot.compat.PxgraphParser
Construct a parser to configure the specified plot.
PylaskiProperty - Class in org.kepler.gis.actor.pylaski
Extract measurements in query results from GetPylaskiMeasurements.
PylaskiProperty(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.pylaski.PylaskiProperty
 
pylaskiUrl - Variable in class org.kepler.gis.actor.pylaski.GetPylaskiMeasurements
 
PylaskiUtilities - Class in org.kepler.gis.actor.pylaski
Utility functions and classes for interfacing with the Pylaski REST API
PylaskiUtilities.Selection - Enum in org.kepler.gis.actor.pylaski
Station selection types
PylaskiUtilities.Settings - Class in org.kepler.gis.actor.pylaski
Configure settings for sending REST API requests.
PythonScript - Class in ptolemy.actor.lib.python
An actor of this class executes a Python script.
PythonScript(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.python.PythonScript
Construct an actor with the given container and name.
PythonShellEffigy - Class in ptolemy.actor.gui.python
A representative of an Python expression shell.
PythonShellEffigy(Workspace) - Constructor for class ptolemy.actor.gui.python.PythonShellEffigy
Create a new effigy in the specified workspace with an empty string for its name.
PythonShellEffigy(CompositeEntity, String) - Constructor for class ptolemy.actor.gui.python.PythonShellEffigy
Create a new effigy in the given container with the given name.
PythonShellEffigy.ShellFactory - Class in ptolemy.actor.gui.python
A factory for creating new Ptolemy effigies.
PythonShellFrame(PythonShellTableau) - Constructor for class ptolemy.actor.gui.python.PythonShellTableau.PythonShellFrame
Construct a frame to display the PythonShell window.
PythonShellTableau - Class in ptolemy.actor.gui.python
A tableau that provides an interactive shell for evaluating Python expressions.
PythonShellTableau(PythonShellEffigy, String) - Constructor for class ptolemy.actor.gui.python.PythonShellTableau
Create a new tableau.
PythonShellTableau.Factory - Class in ptolemy.actor.gui.python
A factory that creates a control panel to display a Python shell.
PythonShellTableau.PythonShellFrame - Class in ptolemy.actor.gui.python
The frame that is created by an instance of PythonShellTableau.

Q

QAQC - Class in org.ROADnet
Produce an output token on each firing with a value that is equal to a QAQC checked version of the input.
QAQC(CompositeEntity, String) - Constructor for class org.ROADnet.QAQC
Construct an actor with the given container and name.
QBApp - Class in org.ecoinformatics.seek.querybuilder
The Query Builder app which extends a JPanel.
QBApp(QBEditor) - Constructor for class org.ecoinformatics.seek.querybuilder.QBApp
Constructor with Applet
QBApp(QBApplet) - Constructor for class org.ecoinformatics.seek.querybuilder.QBApp
Constructor with Applet
QBApp(QBApplet, GraphicsConfiguration) - Constructor for class org.ecoinformatics.seek.querybuilder.QBApp
QBApp Constructor
QBApplet - Class in org.ecoinformatics.seek.querybuilder
Applet for housing the QBApp (JPanel)
QBApplet() - Constructor for class org.ecoinformatics.seek.querybuilder.QBApplet
 
QBBuilderInterface - Interface in org.ecoinformatics.seek.querybuilder
 
QBEditor - Class in org.kepler.objectmanager.data.db
QBEditor is a top-level window containing the Query Builder UI.
QBEditor(QBTableauFactory, StringAttribute, StringAttribute, String) - Constructor for class org.kepler.objectmanager.data.db.QBEditor
Construct an QB with the Schema and SQl.
QBEffigy - Class in org.kepler.objectmanager.data.db
An effigy for a SQL XML definition.
QBEffigy(Workspace) - Constructor for class org.kepler.objectmanager.data.db.QBEffigy
Create a new effigy in the specified workspace with an empty string for its name.
QBEffigy(CompositeEntity, String) - Constructor for class org.kepler.objectmanager.data.db.QBEffigy
Create a new effigy in the given directory with the given name.
QBEffigy.Factory - Class in org.kepler.objectmanager.data.db
A factory for creating new effigies.
QBSplitPaneAdvanced - Class in org.ecoinformatics.seek.querybuilder
This class shows a split view with a set of table schemas as draggable tables in the upper pane.
QBSplitPaneAdvanced(DSSchemaIFace, TableModelListener) - Constructor for class org.ecoinformatics.seek.querybuilder.QBSplitPaneAdvanced
QBSplitPaneAdvanced Constructor
QBSplitPaneIntermediate - Class in org.ecoinformatics.seek.querybuilder
This class shows a split view with a set of table schemas as draggable tables in the upper pane.
QBSplitPaneIntermediate(DSSchemaIFace, TableModelListener) - Constructor for class org.ecoinformatics.seek.querybuilder.QBSplitPaneIntermediate
QBSplitPaneIntermediate Constructor
QBSplitPaneSQL - Class in org.ecoinformatics.seek.querybuilder
Simple pane containing a text control for displaying the SQL of the query
QBSplitPaneSQL() - Constructor for class org.ecoinformatics.seek.querybuilder.QBSplitPaneSQL
QBSplitPane Constructor
QBSplitPaneStandard - Class in org.ecoinformatics.seek.querybuilder
This class shows a split view with a set of table schemas showing via tabs in the upper pane.
QBSplitPaneStandard(DSSchemaIFace) - Constructor for class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
QBSplitPaneBase Constructor
QBTableau - Class in org.kepler.objectmanager.data.db
A tableau representing Query Builder.
QBTableau(QBEffigy, String) - Constructor for class org.kepler.objectmanager.data.db.QBTableau
Construct a new tableau for the model represented by the given effigy.
QBTableau(QBEffigy, String, QBEditor) - Constructor for class org.kepler.objectmanager.data.db.QBTableau
Construct a new tableau for the model represented by the given effigy.
QBTableauFactory - Class in org.kepler.objectmanager.data.db
This class is an attribute that creates a Query Builder to edit a specified string attribute in the container of this attribute.
QBTableauFactory(NamedObj, String) - Constructor for class org.kepler.objectmanager.data.db.QBTableauFactory
Create a factory with the given name and container.
qr(double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Return a pair of matrices that are the decomposition of the input matrix (which must have linearly independent column vectors), which is m x n, into the matrix product of Q, which is m x n with orthonormal column vectors, and R, which is an invertible n x n upper triangular matrix.
qr(float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Return a pair of matrices that are the decomposition of the input matrix (which must have linearly independent column vectors), which is m x n, into the matrix product of Q, which is m x n with orthonormal column vectors, and R, which is an invertible n x n upper triangular matrix.
QUALITY_SCORE - Static variable in class org.kepler.monitor.MonitoredStatus.State
Names for quality properties
QualityFigure - Class in org.kepler.monitor.figure
A quality figure.
QualityFigure(RectangularShape) - Constructor for class org.kepler.monitor.figure.QualityFigure
 
Quantization - Class in ptolemy.math
The Quantization class defines the mapping of numeric values with unlimited precision to finite precision.
Quantization(Overflow, Rounding) - Constructor for class ptolemy.math.Quantization
Construct a Quantization with the given precision, overflow strategy, and rounding strategy.
quantize(double, int, int) - Static method in class ptolemy.data.expr.FixPointFunctions
Create a double whose value is the quantized version of the given double value.
quantize(Quantization) - Method in class ptolemy.data.FixToken
Return a new token whose value is constrained to comply with a quantization specification.
quantize(Quantization) - Method in class ptolemy.math.FixPoint
Return the value after conversion to comply with a quantization specification.
quantize(BigInteger, Precision) - Method in class ptolemy.math.Overflow.Grow
 
quantize(BigInteger, Precision) - Method in class ptolemy.math.Overflow.Minimize
 
quantize(BigInteger, Precision) - Method in class ptolemy.math.Overflow.Modulo
 
quantize(BigInteger, Precision) - Method in class ptolemy.math.Overflow
Return a new FixPoint object based on the given BigInteger value and Precision constraint.
quantize(BigInteger, Precision) - Method in class ptolemy.math.Overflow.Saturate
 
quantize(BigInteger, Precision) - Method in class ptolemy.math.Overflow.ToZero
 
quantize(BigInteger, Precision) - Method in class ptolemy.math.Overflow.Trap
 
QuantizedSampler - Class in ptolemy.domains.de.lib
Output the input if the signal has changed more than a quantum value since the last input.
QuantizedSampler(CompositeEntity, String) - Constructor for class ptolemy.domains.de.lib.QuantizedSampler
Construct a new instance of the quantizer.
quantizeGrow(BigInteger, Precision) - Static method in class ptolemy.math.Overflow
Quantize a FixPoint value using a "grow" overflow strategy.
quantizeMinimum(BigInteger, Precision) - Static method in class ptolemy.math.Overflow
Generates a new FixPoint data value based on the unscaled value bigInt using as few bits as possible.
quantizeModulo(BigInteger, Precision) - Static method in class ptolemy.math.Overflow
Quantize a FixPoint value using a "modulo" overflow strategy.
Quantizer - Class in ptolemy.actor.lib
Produce an output token on each firing with a value that is a quantized version of the input.
Quantizer(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Quantizer
Construct an actor with the given container and name.
Quantizer - Class in ptolemy.math
This class provides a set of static methods for creating instances of the FixPoint class from doubles, integers, or fixed point numbers.
quantizeSaturate(BigInteger, Precision) - Static method in class ptolemy.math.Overflow
Quantize a FixPoint value using a "saturate" overflow strategy.
quantizeToZero(BigInteger, Precision) - Static method in class ptolemy.math.Overflow
Quantize a FixPoint value using a "to Zero" overflow strategy.
quantum - Variable in class ptolemy.domains.de.lib.QuantizedSampler
The quantum.
QuasiTransparentDirector - Interface in ptolemy.actor
This is a marker interface for modal directors.
query - Variable in class org.geon.DatabaseQuery
An input query string.
query - Variable in class org.geon.TransitiveClosureDBQuery
A query string.
Query - Class in ptolemy.gui
Create a query with various types of entry boxes and controls.
Query() - Constructor for class ptolemy.gui.Query
Construct a panel with no entries in it.
Query.QueryActionListener - Class in ptolemy.gui
Listener for "line" and radio button entries.
Query.QueryColorChooser - Class in ptolemy.gui
Panel containing an entry box and button that opens a color chooser.
Query.QueryFileChooser - Class in ptolemy.gui
Panel containing an entry box and file chooser.
Query.QueryFocusListener - Class in ptolemy.gui
Listener for line entries, for when they lose the focus.
Query.QueryItemListener - Class in ptolemy.gui
Listener for "CheckBox" and "Choice" entries.
Query.SliderListener - Class in ptolemy.gui
Listener for changes in slider.
QUERY_ERROR - Static variable in class org.ecoinformatics.seek.querybuilder.DBQueryDefParserEmitter
error building query
QUERY_OK - Static variable in class org.ecoinformatics.seek.querybuilder.DBQueryDefParserEmitter
query was built OK
Queryable - Interface in org.kepler.provenance
An interface for querying provenance stores.
QueryActionListener(Query, String) - Constructor for class ptolemy.gui.Query.QueryActionListener
Construct a listener for line and radio button entries.
QueryChooser - Class in ptolemy.gui
Abstract superclass for customized entry boxes.
QueryChooser(Query, String, Color, Color) - Constructor for class ptolemy.gui.QueryChooser
Initializes the chooser.
QueryChooserHelper - Class in ptolemy.gui
A little helper class for QueryChooser classes.
QueryChooserHelper() - Constructor for class ptolemy.gui.QueryChooserHelper
 
QueryColorChooser(Query, String, String) - Constructor for class ptolemy.gui.Query.QueryColorChooser
Create a panel containing an entry box and a color chooser.
QueryException - Exception in org.kepler.provenance
A provenance querying exception.
QueryException(String) - Constructor for exception org.kepler.provenance.QueryException
Construct a new QueryException with a message.
QueryException(String, Throwable) - Constructor for exception org.kepler.provenance.QueryException
Construct a new QueryException with a message and cause.
queryExpr1 - Variable in class org.sdm.spa.CreateExpressionFromQuery
 
queryExpr2 - Variable in class org.sdm.spa.CreateExpressionFromQuery
 
queryExpr3 - Variable in class org.sdm.spa.CreateExpressionFromQuery
 
queryExpr4 - Variable in class org.sdm.spa.CreateExpressionFromQuery
 
QueryFileChooser(Query, String, String, URI, File, boolean, boolean) - Constructor for class ptolemy.gui.Query.QueryFileChooser
Construct a query file chooser.
QueryFileChooser(Query, String, String, URI, File, boolean, boolean, boolean, Color, Color) - Constructor for class ptolemy.gui.Query.QueryFileChooser
Construct a query file chooser.
QueryFileChooser(Query, String, String, URI, File, boolean, boolean, boolean, Color, Color, FilenameFilter) - Constructor for class ptolemy.gui.Query.QueryFileChooser
Construct a query file chooser.
QueryFocusListener(Query, String) - Constructor for class ptolemy.gui.Query.QueryFocusListener
Construct a listener for when line entries lose the focus.
queryForAndSetRuns(String, String, String, String, String, String, boolean) - Method in class org.kepler.workflowrunmanager.WorkflowRunManager
 
queryId - Variable in class org.ecoinformatics.seek.datasource.eml.eml2.EML2MetadataSpecification
 
queryId - Variable in class org.ecoinformatics.seek.ecogrid.quicksearch.SearchQuery
 
queryId - Variable in class org.kepler.dataproxy.metadata.ADN.ADNMetadataSpecification
 
QueryingSchedulerServerResultParser - Class in org.kepler.workflowscheduler.gui
A parser which parses the result xml from remote scheduler server to get existing schedules information
QueryingSchedulerServerResultParser() - Constructor for class org.kepler.workflowscheduler.gui.QueryingSchedulerServerResultParser
Constructor
QueryItemListener(Query, String) - Constructor for class ptolemy.gui.Query.QueryItemListener
Create a listener for the CheckBox and Choice entries.
QUERYLIMIT - Variable in class org.geon.LidarUtilities
 
QUERYLIMITNOACC - Variable in class org.geon.LidarUtilities
 
QueryListener - Interface in ptolemy.gui
Listener interface for changes in the query box.
queryPath - Variable in class org.kepler.objectmanager.repository.Repository
 
queryPlan - Variable in class org.sdm.spa.CreateExpressionFromQuery
 
queryRegistryRewriteConfig() - Static method in class org.ecoinformatics.seek.ecogrid.SearchRegistryAction
Query the registry and persist to config file
QUERYSERVICETYPE - Static variable in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
 
queryString - Variable in class org.kepler.spark.mllib.SparkSQLQuery
Query string
queryTime(long) - Method in class org.geon.LidarUtilities
 
QUERYTITLE - Static variable in class org.ecoinformatics.seek.ecogrid.MetadataSpecificationInterface
Description of the Field
QueryUtilities - Class in ptolemy.actor.gui
This class contains utility methods for Ptolemy Query classes that access the configuration.
queryValues - Variable in class org.geon.DatabaseQuery
Value(s) to use in a prepared statement query.
QUEST - Static variable in class org.json.XML
The Character '?'.
QUESTION - Static variable in class org.ecoinformatics.seek.dataquery.DBTablesGenerator
 
QUESTION - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
Queue - Class in ptolemy.domains.de.lib
This actor implements a queue.
Queue(CompositeEntity, String) - Constructor for class ptolemy.domains.de.lib.Queue
Construct an actor with the given container and name.
QueueReceiver - Class in ptolemy.actor
A first-in, first-out (FIFO) queue receiver with variable capacity and optional history.
QueueReceiver() - Constructor for class ptolemy.actor.QueueReceiver
Construct an empty receiver with no container.
QueueReceiver(IOPort) - Constructor for class ptolemy.actor.QueueReceiver
Construct an empty receiver with the specified container.
queueSize() - Method in class ptolemy.domains.de.lib.Server
 
QUICKPATH - Static variable in class org.ecoinformatics.seek.ecogrid.MetadataSpecificationInterface
Description of the Field
QuickSort - Class in org.ecoinformatics.seek.querybuilder
 
QuickSort() - Constructor for class org.ecoinformatics.seek.querybuilder.QuickSort
 
QUOT - Static variable in class org.json.XML
The Character '"'.
QUOTE - Static variable in class org.ecoinformatics.seek.dataquery.DBTablesGenerator
 
quote(String) - Static method in class org.json.JSONObject
Produce a string in double quotes with backslash sequences in all the right places.

R

r1 - Variable in class ptolemy.kernel.test.ExampleSystem
 
r10 - Variable in class ptolemy.kernel.test.ExampleSystem
 
r11 - Variable in class ptolemy.kernel.test.ExampleSystem
 
r12 - Variable in class ptolemy.kernel.test.ExampleSystem
 
r2 - Variable in class ptolemy.kernel.test.ExampleSystem
 
r3 - Variable in class ptolemy.kernel.test.ExampleSystem
 
r4 - Variable in class ptolemy.kernel.test.ExampleSystem
 
r5 - Variable in class ptolemy.kernel.test.ExampleSystem
 
r6 - Variable in class ptolemy.kernel.test.ExampleSystem
 
r7 - Variable in class ptolemy.kernel.test.ExampleSystem
 
r8 - Variable in class ptolemy.kernel.test.ExampleSystem
 
r9 - Variable in class ptolemy.kernel.test.ExampleSystem
 
RadioMenuActionFactory - Class in ptolemy.vergil.toolbox
A factory that adds a given action or set of actions as radio selections to a context menu.
RadioMenuActionFactory(Action) - Constructor for class ptolemy.vergil.toolbox.RadioMenuActionFactory
Construct a factory that adds a given action as a radio selection to a given context menu.
RadioMenuActionFactory(Action[], String) - Constructor for class ptolemy.vergil.toolbox.RadioMenuActionFactory
Construct a factory that adds a given group of actions as radio selections to a given context menu in a submenu with the specified label.
radius - Variable in class com.numericsolutions.geomodeltools.DensityGridActor
 
radius - Variable in class org.kepler.gis.actor.pylaski.GetPylaskiMeasurements
 
RaisedCosine - Class in ptolemy.domains.sdf.lib
This actor implements an FIR filter with a raised cosine or square-root raised cosine frequency response.
RaisedCosine(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.RaisedCosine
Construct an actor with the given container and name.
RaisedCosineSampleGenerator(double, double) - Constructor for class ptolemy.math.SignalProcessing.RaisedCosineSampleGenerator
Construct a RaisedCosineSampleGenerator.
Ramp - Class in ptolemy.actor.lib
Produce an output token on each firing with a value that is incremented by the specified step each iteration.
Ramp(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Ramp
Construct an actor with the given container and name.
RampNecessaryFiles - Class in ptolemy.actor.lib.test
Test out the fileDependencies Block in codegen.
RampNecessaryFiles(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.test.RampNecessaryFiles
Construct an actor with the given container and name.
random(int) - Static method in class ptolemy.data.expr.UtilityFunctions
Return an array of IID random numbers with value greater than or equal to 0.0 and less than 1.0.
random(int, int) - Static method in class ptolemy.data.expr.UtilityFunctions
Return a matrix of IID random numbers with value greater than or equal to 0.0 and less than 1.0.
randomBernoulli(double, int) - Static method in class ptolemy.math.DoubleArrayStat
Return a new array of Bernoulli random variables with a given probability of success p.
RandomDate - Class in org.kepler.date
Generate a random date between upper and lower dates.
RandomDate(CompositeEntity, String) - Constructor for class org.kepler.date.RandomDate
Construct a RandomDate with the given container and name.
RandomDirectoryMaker - Class in org.kepler.actor
This actor creates a new directory.
RandomDirectoryMaker(CompositeEntity, String) - Constructor for class org.kepler.actor.RandomDirectoryMaker
Construct a RandomDirectoryMaker with the given container and name.
randomExponential(double, int) - Static method in class ptolemy.math.DoubleArrayStat
Return a new array of exponentially distributed doubles with parameter lambda.
RandomForestModel - Class in org.kepler.spark.mllib
Train a RandomForest model using Spark MLlib.
RandomForestModel(CompositeEntity, String) - Constructor for class org.kepler.spark.mllib.RandomForestModel
 
randomGaussian(double, double, int) - Static method in class ptolemy.math.DoubleArrayStat
Return a new array of Gaussian distributed doubles with a given mean and standard deviation.
RandomInteger - Class in ptolemy.actor.lib
Generated integers that are uniformly sampled from the range of 32-bit integers.
RandomInteger(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.RandomInteger
Construct an actor with the given container and name.
randomPoisson(double, int) - Static method in class ptolemy.math.DoubleArrayStat
Return a new array of Poisson random variables (as doubles) with a given mean.
randomReturnType(Type) - Static method in class ptolemy.data.expr.UtilityFunctions
Return the (exact) return type of the random function above.
RandomSource - Class in ptolemy.actor.lib
A base class for sources of random numbers.
RandomSource(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.RandomSource
Construct an actor with the given container and name.
randomUniform(double, double, int) - Static method in class ptolemy.math.DoubleArrayStat
Return a new array of uniformly distributed doubles ranging from a to b.
Range - Class in org.kepler.tagging
Created by IntelliJ IDEA.
Range(int, int) - Constructor for class org.kepler.tagging.Range
 
RANGE_SEPARATOR - Static variable in class org.kepler.workflowrunmanager.WRMDefaults
 
raster - Variable in class org.kepler.gis.actor.io.RasterReader
The raster output.
RASTER - Static variable in class org.kepler.gis.data.RasterToken
 
RASTER_THUMB_ATTRIB_NAME - Static variable in class org.kepler.icon.ComponentEntityConfig
attribute name for attribute added to actors to describe raster thumbnail image file location
rasterFile() - Method in class org.kepler.gis.data.RasterToken
Get the file.
rasterFileName - Variable in class org.ecoinformatics.seek.gis.grass.GISBufferActor
 
rasterFileName - Variable in class org.ecoinformatics.seek.gis.grass.GISRasterActor
 
rasterFileName - Variable in class org.ecoinformatics.seek.gis.java_gis.CVHull2Raster
The name to be given to the resulting raster grid file
rasterFileResult - Variable in class org.ecoinformatics.seek.gis.grass.GISRasterActor
 
rasterFileResult - Variable in class org.ecoinformatics.seek.gis.java_gis.CVHull2Raster
The output raster file result (it is in *.asc format).
RasterReader - Class in org.kepler.gis.actor.io
An actor to read a raster from a file.
RasterReader(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.io.RasterReader
 
RasterToken - Class in org.kepler.gis.data
Token containing a GIS raster.
RasterToken(GridCoverage) - Constructor for class org.kepler.gis.data.RasterToken
Create a new RasterToken from a coverage.
RasterToken(AbstractGridCoverage2DReader) - Constructor for class org.kepler.gis.data.RasterToken
Create a new RasterToken from a reader.
RasterToken(File) - Constructor for class org.kepler.gis.data.RasterToken
Create a new RasterToken from a file.
RasterToken.RasterType - Class in org.kepler.gis.data
 
RasterType() - Constructor for class org.kepler.gis.data.RasterToken.RasterType
 
RasterUtilities - Class in org.kepler.gis.util
A collection of utilities for rasters.
RasterUtilities.RasterInfo - Class in org.kepler.gis.util
Utility class that contains information about a raster.
RasterWriter - Class in org.kepler.gis.actor.io
Write a raster data set to a file.
RasterWriter(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.io.RasterWriter
Create a new RasterWriter in a container with the specified name.
RawDataCacheObject - Class in org.kepler.objectmanager.cache
Class that represents an object in the CacheManager.
RawDataCacheObject() - Constructor for class org.kepler.objectmanager.cache.RawDataCacheObject
 
RawDataCacheObject(String, KeplerLSID) - Constructor for class org.kepler.objectmanager.cache.RawDataCacheObject
construct a new CacheObject
rBusy(Rengine, int) - Method in class org.ecoinformatics.seek.R.RConsole
 
rBusy(Rengine, int) - Method in class ptolemy.actor.lib.r.RConsole
Print a busy message.
rChooseFile(Rengine, int) - Method in class org.ecoinformatics.seek.R.RConsole
 
rChooseFile(Rengine, int) - Method in class ptolemy.actor.lib.r.RConsole
Choose a file.
RConsole - Class in org.ecoinformatics.seek.R
A simple buffering console that is used to cache the output from an R session and then can be used to return the console output as a string.
RConsole() - Constructor for class org.ecoinformatics.seek.R.RConsole
Construct the R Console class and initialize the buffer containing the text.
RConsole - Class in ptolemy.actor.lib.r
A simple buffering console that is used to cache the output from an R session and then can be used to return the console output as a string.
RConsole() - Constructor for class ptolemy.actor.lib.r.RConsole
Construct the R Console class and initialize the buffer containing the text.
Rcwd - Variable in class org.ecoinformatics.seek.R.RExpression
The 'R' working directory (home dir by default)
Rcwd - Variable in class org.ecoinformatics.seek.R.RExpression2
The 'R' working directory (home dir by default)
Rcwd - Variable in class ptolemy.actor.lib.r.RExpression
The 'R' working directory (home dir by default).
Rcwd - Variable in class ptolemy.actor.lib.r.RExpression2
The 'R' working directory (home dir by default).
reachableNodes(Node) - Method in class ptolemy.graph.DirectedGraph
Find all the nodes that can be reached from the specified node.
reachableNodes(Object) - Method in class ptolemy.graph.DirectedGraph
Find all the nodes that can be reached from any node that has the specified node weight (weights version).
reachableNodes(Object[]) - Method in class ptolemy.graph.DirectedGraph
Find all the nodes that can be reached from the specified collection of nodes (weights version).
reachableNodes(Collection) - Method in class ptolemy.graph.DirectedGraph
Find all the nodes that can be reached from the specified collection of nodes.
reacheableAlternatingSimulation(Set, InterfaceAutomaton, InterfaceAutomaton) - Static method in class ptolemy.domains.modal.kernel.ia.InterfaceAutomaton
Return the reacheable state pairs in the specified alternating simulation.
reachedEnd() - Method in class org.kepler.bio.stratosphere.input.FASTAInputFormat
Checks whether the current split is at its end.
reachedEnd() - Method in class org.kepler.bio.stratosphere.input.FASTAInputFormatBySize
Checks whether the current split is at its end.
reachedEnd() - Method in class org.kepler.stratosphere.io.input.DataFileInputFormat
Checks whether the current split is at its end.
reachedEnd() - Method in class org.kepler.stratosphere.io.input.TokenInputFormat
See if the token split has been read.
reacquireReadPermission(int) - Method in class ptolemy.kernel.util.Workspace
Reacquire read permission on the workspace for the current thread.
reactAt(double, Component) - Method in class ptolemy.component.domains.ptinyos.PtinyOSDirector
Request that the react() method of the specified component be invoked at the specified time.
read(DataInput) - Method in class org.kepler.stratosphere.io.input.TokenInputSplit
Read a token from the input stream.
read(DataInput) - Method in class org.kepler.stratosphere.type.ByteArray
Read the byte array from the given data input stream.
read(URL) - Method in class ptolemy.actor.gui.ImageTokenEffigy
Read the specified URL and parse the data.
read(URL) - Method in class ptolemy.actor.gui.TokenEffigy
Read the specified URL and parse the data.
read() - Method in class ptolemy.actor.parameters.ParameterSet
Read the contents of the file named by this parameter and create attributes in the current scope.
read(InputStream) - Method in class ptolemy.plot.compat.PxgraphParser
Read a pxgraph-compatible binary or ASCII encoded file.
read(InputStream) - Method in class ptolemy.plot.Plot
Read a file with the old syntax (non-XML).
read(InputStream) - Method in class ptolemy.plot.PlotBox
Read commands and/or plot data from an input stream in the old (non-XML) file syntax.
read(String) - Method in class ptolemy.plot.PlotBox
Read a single line command provided as a string.
read(InputStream) - Method in interface ptolemy.plot.PlotBoxInterface
Read commands and/or plot data from an input stream in the old (non-XML) file syntax.
read(String) - Method in interface ptolemy.plot.PlotBoxInterface
Read a single line command provided as a string.
read(InputStream) - Method in interface ptolemy.plot.PlotInterface
Read a file with the old syntax (non-XML).
READ_BLOCKED - Static variable in class ptolemy.domains.pn.kernel.PNDirector
Indicator that a thread is read blocked.
readAll - Variable in class org.geon.BinaryFileReader
If true, read the entire contents of the file at once.
readAudio(DataInputStream) - Static method in class ptolemy.media.Audio
Read Sun audio file (.au) format and return the audio data as an array.
readChar() - Method in class ptolemy.data.expr.SimpleCharStream
Read a character.
readChar() - Method in class ptolemy.moml.unit.SimpleCharStream
Read a character.
readConfiguration(URL) - Static method in class ptolemy.actor.gui.ConfigurationApplication
Read a Configuration from the URL given by the specified string.
reader() - Method in class org.kepler.gis.data.RasterToken
Get the reader.
Reader - Class in ptolemy.actor.lib
Deprecated.
Use ExpressionReader instead.
Reader(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Reader
Deprecated.
Construct an actor with the given container and name.
ReaderDemo - Class in com.microstar.xml.demo
Demonstration application showing Æfred's event stream from a stream.
ReaderDemo() - Constructor for class com.microstar.xml.demo.ReaderDemo
 
ReaderProcessWriter - Class in ptolemy.media.javasound.demo.ReaderProcessWriter
A simple application that demonstrates the use of SoundReader and SoundWriter by performing soft clipping on an input sound file.
ReaderProcessWriter() - Constructor for class ptolemy.media.javasound.demo.ReaderProcessWriter.ReaderProcessWriter
 
readExternal(ObjectInput) - Method in class org.kepler.objectmanager.cache.ActorCacheObject
deserialize this class
readExternal(ObjectInput) - Method in class org.kepler.objectmanager.cache.RawDataCacheObject
deserialize this object
readExternal(ObjectInput) - Method in class org.kepler.objectmanager.cache.WorkflowRunCacheObject
 
readExternal(ObjectInput) - Method in class org.kepler.spark.stub.PairFlatMapFunctionBase
Deserialize the configuration.
readFields(DataInput) - Method in class org.kepler.hadoop.io.input.TokenInputSplit
Unserialize the fields for this split.
readFields(DataInput) - Method in class org.kepler.hadoop.io.TaggedBytesWritable
 
readFields(DataInput) - Method in class org.kepler.hadoop.io.TaggedDoubleWritable
 
readFields(DataInput) - Method in class org.kepler.hadoop.io.TaggedIntWritable
 
readFields(DataInput) - Method in class org.kepler.hadoop.io.TaggedLongWritable
 
readFields(DataInput) - Method in class org.kepler.hadoop.io.TaggedNullWritable
 
readFields(DataInput) - Method in class org.kepler.hadoop.io.TaggedObjectWritable
 
readFields(DataInput) - Method in class org.kepler.hadoop.io.TaggedText
 
readFields(DataInput) - Method in class org.kepler.hadoop.io.TokenWritable
 
readFile(String) - Static method in class org.kepler.ExecutionEngine
read a file and return its contents as a string
readFile(File) - Static method in class org.kepler.gis.util.VectorUtilities
Create a vector token from reading a file containing features.
readFile(File, String) - Static method in class org.kepler.gis.util.VectorUtilities
Create a vector token from a specific type in a file containing features.
readFile(File, String, CoordinateReferenceSystem) - Static method in class org.kepler.gis.util.VectorUtilities
Create a vector token from a specific type in a file containing features.
readFile(String) - Static method in class ptolemy.data.expr.UtilityFunctions
Get the string text contained in the specified file.
readFileAsString(File) - Static method in class org.kepler.util.FileUtil
Read in a file as a string.
readFromBuffer(int, Buffer) - Method in class org.kepler.webview.server.auth.NoneUser
 
readFromInputStream(InputStream) - Static method in class ptolemy.util.FileUtilities
Utility method to read a string from an input stream.
readGeoJSONString(String) - Static method in class org.kepler.gis.util.VectorUtilities
Read a string containing GeoJSON.
readGeoJSONString(String, CoordinateReferenceSystem) - Static method in class org.kepler.gis.util.VectorUtilities
Read a string containing GeoJSON using a default CRS.
readGeoJSONString(String, CoordinateReferenceSystem, SimpleFeatureType) - Static method in class org.kepler.gis.util.VectorUtilities
Read a string containing GeoJSON.
readGeoString(String, CoordinateReferenceSystem) - Static method in class org.kepler.gis.util.VectorUtilities
Read a string containing either GML or GeoJSON.
readGMLString(String) - Static method in class org.kepler.gis.util.VectorUtilities
Read a string containing GML.
readInputs(int, int) - Method in class ptolemy.domains.de.lib.MostRecent
Consume inputs and save them.
readInputs() - Method in class ptolemy.domains.modal.kernel.FSMActor
Set the value of the shadow variables for input ports of this actor.
readKey - Variable in class ptolemy.actor.lib.Dictionary
An input that provides a key for a value to be read from the dictionary.
readKeyArray - Variable in class ptolemy.actor.lib.Dictionary
An input that provides an array of keys to be read simultaneously from the dictionary.
readLine(Text, int, int) - Method in class org.kepler.hadoop.io.input.DelimitedTextFileReader
Read one line from the InputStream into the given Text.
readLine(Text, int) - Method in class org.kepler.hadoop.io.input.DelimitedTextFileReader
Read from the InputStream into the given Text.
readLine(Text) - Method in class org.kepler.hadoop.io.input.DelimitedTextFileReader
Read from the InputStream into the given Text.
readLine(Text, int, int) - Method in class org.kepler.hadoop.io.input.MultipleLineReader
Read one line from the InputStream into the given Text.
readLine(Text, int) - Method in class org.kepler.hadoop.io.input.MultipleLineReader
Read from the InputStream into the given Text.
readLine(Text) - Method in class org.kepler.hadoop.io.input.MultipleLineReader
Read from the InputStream into the given Text.
readLines(String) - Static method in class ptolemy.util.StringUtilities
Return a LinkedList of the lines in a string that aren't comments.
readMatrix() - Method in class ptolemy.data.expr.MatrixParser
Read a Matrix from File.
readMatrix(String) - Static method in class ptolemy.data.expr.UtilityFunctions
Deprecated.
Use eval(readFile()) instead.
readMatrix(String) - Method in class ptolemy.domains.pn.demo.QR.ArrayIndex
Read in a matrix with a given name and store it into a associative data structure.
readOutputsFromRefinement() - Method in class ptolemy.domains.modal.kernel.FSMActor
Set the input variables for channels that are connected to an output port of the refinement of current state.
readQueryDef(DSSchemaIFace, String) - Static method in class org.ecoinformatics.seek.querybuilder.DBQueryDefParserEmitter
Reads in a Query and returns a Query object
readResource(String) - Static method in class ptolemy.data.expr.UtilityFunctions
Get the string text contained in the specified resource, which is a file that is specified relative to the Java classpath.
readSchemaDef(String) - Static method in class org.ecoinformatics.seek.querybuilder.DBSchemaParserEmitter
Reads in a Schema Definition and returns a DSSchemaIFace object
readSequence(Text, int, int) - Method in class org.kepler.bio.hadoop.input.FASTAFileReader
Read one line from the InputStream into the given Text.
readSequence(Text) - Method in class org.kepler.bio.hadoop.input.FASTAFileReader
Read from the InputStream into the given Text.
readServices() - Method in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
 
readWFS(String, String) - Static method in class org.kepler.gis.util.VectorUtilities
Get a vector token from a WFS service.
readXMLFile2DOM(String) - Static method in class org.ecoinformatics.seek.querybuilder.DBUIUtils
Reads in an XML document and returns the Document node of the DOM tree
readXMLFile2Str(String) - Static method in class org.ecoinformatics.seek.querybuilder.DBUIUtils
Reads in an XML document and returns a String of the file's contents
REAL - Static variable in class org.kepler.objectmanager.data.DataType
represents numbers that are not necessarily whole
real - Variable in class ptolemy.math.Complex
The real part.
real(Complex) - Static method in class ptolemy.math.Complex
Return the real part of the specified complex number.
real(double) - Static method in class ptolemy.math.Complex
Return the real part of the specified real number, which is the real number itself.
RealDependency - Class in ptolemy.actor.util
This dependency represents causal relationships that have a real value or are infinite.
realJobId - Variable in class org.kepler.actor.job.GenericJobReconnect
The real job id generated by the scheduler when the job was originally submitted This parameter is read each time in fire().
realParts(Complex[]) - Static method in class ptolemy.math.ComplexArrayMath
Return a new array of doubles that includes the real parts of the array of complex numbers.
realParts(Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new matrix that is formed by taking the real parts of the complex numbers in the argument matrix.
realTime - Variable in class ptolemy.actor.lib.ExecutionTime
If true, then the executionTime parameter is interpreted as milliseconds.
RealTimeComposite - Class in ptolemy.actor.lib.hoc
Deprecated.
Use ThreadedComposite instead
RealTimeComposite(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.hoc.RealTimeComposite
Deprecated.
Create an actor with a name and a container.
RealTimePlotter - Class in ptolemy.actor.lib.gui
This plotter plots input data as a function of elapsed real time in seconds.
RealTimePlotter(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.gui.RealTimePlotter
Construct an actor with the given container and name.
REALTYPE - Static variable in class org.kepler.objectmanager.data.DataType
 
rebuild() - Method in class org.kepler.objectmanager.library.LibIndex
Completely delete the library index and recreate it from the contents of cached KARs.
rebuildLibrary() - Method in class org.kepler.gui.ComponentLibraryPreferencesTab
Rebuild the library.
rebuildLibrary() - Method in class org.kepler.gui.kar.KARPreferencesTab
If compliance level changes, rebuild library.
receiveId(IOPort, int, Id) - Method in class org.kepler.provenance.PortConnector
A port should receive an id on a specific channel.
Receiver - Interface in ptolemy.actor
Interface for objects that can hold tokens.
RECEIVERS - Static variable in class ptolemy.actor.IOPort
Indicate that the description(int) method should include receivers contained by this port (if any).
RecIDCM3 - Class in org.cipres.kepler
This RecIDCM3 actor wraps the RecIDCM3 CORBA service provided by the CIPRes software package.
RecIDCM3(CompositeEntity, String) - Constructor for class org.cipres.kepler.RecIDCM3
Construct a RecIDCM3 actor with the given container and name.
reciprocal() - Method in class ptolemy.math.Complex
Return the reciprocal of this complex number.
reciprocal(Complex) - Static method in class ptolemy.math.Complex
Return the reciprocal of this complex number.
reconnect - Variable in class org.kepler.actor.job.GenericJobReconnect
true if the job was found in queue.
reconnect(JobManager) - Method in class org.kepler.job.Job
Reconnect to a executing job.
RECORD - Static variable in class ptolemy.data.type.BaseType
Setting the type of something to RECORD allows it to take on a value that is any record with any fields.
RECORD_DELIMITER - Static variable in class org.kepler.bio.stratosphere.input.FASTAInputFormat
The configuration key to set the record delimiter.
RECORD_DELIMITER - Static variable in class org.kepler.bio.stratosphere.input.FASTAInputFormatBySize
The configuration key to set the record delimiter.
RECORD_POSITION_PARAMETER_PREFIX - Static variable in class org.kepler.stratosphere.io.output.TokenOutputFormat
 
RecordAssembler - Class in ptolemy.actor.lib
On each firing, read one token from each connected input port and assemble them into a RecordToken.
RecordAssembler(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.RecordAssembler
Construct a RecordAssembler with the given container and name.
recordConstruct() - Method in class ptolemy.data.expr.PtParser
 
RecordDisassembler - Class in ptolemy.actor.lib
On each firing, read one RecordToken from the input port and send out the fields of the RecordToken to multiple output ports.
RecordDisassembler(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.RecordDisassembler
Construct a RecordDisassembler with the given container and name.
Recorder - Class in ptolemy.actor.lib
Record all input tokens for later querying.
Recorder(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Recorder
Construct an actor with an input multiport that can accept any Token.
RecorderErrorHandler - Class in ptolemy.moml.test
Record MoML Errors and retrieve them later.
RecorderErrorHandler() - Constructor for class ptolemy.moml.test.RecorderErrorHandler
Create an error handler.
RecorderGeneral - Class in ptolemy.actor.lib.test
Record all input tokens for later querying.
RecorderGeneral(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.test.RecorderGeneral
Construct an actor with an input multiport that can accept any Token.
RecorderListener - Class in ptolemy.kernel.util
A debug listener that records messages in a string buffer.
RecorderListener() - Constructor for class ptolemy.kernel.util.RecorderListener
Create a listener.
RecorderMessageHandler - Class in ptolemy.util.test
A message handler that records messages.
RecorderMessageHandler() - Constructor for class ptolemy.util.test.RecorderMessageHandler
 
recordFiring(FiringEvent.FiringEventType) - Method in class ptolemy.actor.AtomicActor
Record a firing event.
recordFiring(FiringEvent.FiringEventType) - Method in class ptolemy.actor.CompositeActor
Record a firing event.
recordFiring(FiringEvent.FiringEventType) - Method in interface ptolemy.actor.FiringsRecordable
Record a firing event.
RECORDID - Static variable in interface org.kepler.dataproxy.datasource.DataSourceInterface
 
Recording - Class in org.kepler.provenance
The provenance recorder uses the API provided by this class to write provenance information.
Recording() - Constructor for class org.kepler.provenance.Recording
Create a new provenance recording.
RecordingException - Exception in org.kepler.provenance
A provenance recording exception.
RecordingException(String) - Constructor for exception org.kepler.provenance.RecordingException
Construct a new RecordingException with a message.
RecordingException(String, Throwable) - Constructor for exception org.kepler.provenance.RecordingException
Construct a new RecordingException with a message and cause.
RecordingParameters - Class in org.kepler.provenance
 
RecordingParameters(NamedObj) - Constructor for class org.kepler.provenance.RecordingParameters
Create a new set of parameters.
recordingType - Variable in class org.kepler.provenance.ProvenanceRecorder
Which Recording to use.
recordLocation(Window) - Method in class ptolemy.actor.gui.LocationAttribute
Set the value of the attribute to match the location of the specified component.
RecordMerger - Class in org.surge
This actor merges a RecordToken from each input.
RecordMerger(CompositeEntity, String) - Constructor for class org.surge.RecordMerger
Construct a RecordMerger with the given container and name.
RecordOperation - Class in org.kepler.actor
An actor that modifies the contents of record tokens.
RecordOperation(CompositeEntity, String) - Constructor for class org.kepler.actor.RecordOperation
 
RecordPlayer - Class in org.kepler.provenance
A class to convert provenance formats by reading from a a Queryable and writing to a Recording.
RecordPlayer(Queryable) - Constructor for class org.kepler.provenance.RecordPlayer
Create a new RecordPlayer using a Queryable as the source and no Recording output.
RecordPlayer(Queryable, Recording) - Constructor for class org.kepler.provenance.RecordPlayer
Create a new RecordPlayer using a Queryable as the source, and Recording for the output.
recordProperties(Frame) - Method in class ptolemy.actor.gui.WindowPropertiesAttribute
Set the value of the attribute to match those of the specified frame.
recordSize(Component) - Method in class ptolemy.actor.gui.SizeAttribute
Set the value of the attribute to match those of the specified component.
recordToken() - Method in class org.kepler.spark.type.RecordValue
Get the record token from the serialized value.
RecordToken - Class in ptolemy.data
A token that contains a set of label/token pairs.
RecordToken() - Constructor for class ptolemy.data.RecordToken
Construct a RecordToken with no fields.
RecordToken(String[], Token[]) - Constructor for class ptolemy.data.RecordToken
Construct a RecordToken with the specified labels and values.
RecordToken(String) - Constructor for class ptolemy.data.RecordToken
Construct a RecordToken from the specified string.
RecordToken(Map<String, Token>) - Constructor for class ptolemy.data.RecordToken
Construct a RecordToken with the labels and values specified by a given Map object.
recordTokens - Variable in class org.kepler.provenance.ProvenanceRecorder
Record token values.
RecordTokenWritable - Class in org.kepler.hadoop.io
A Writable for Ptolemy record tokens.
RecordTokenWritable() - Constructor for class org.kepler.hadoop.io.RecordTokenWritable
No argument constructor.
RecordTokenWritable(String) - Constructor for class org.kepler.hadoop.io.RecordTokenWritable
Create a new RecordTokenWritable for a string.
RecordToObject - Class in org.ROADnet
Ptolemy actor to use a RecordToken to fill in the fields of a newly instantiated Object and then output this object encapsulated within an ObjectToken.
RecordToObject(CompositeEntity, String) - Constructor for class org.ROADnet.RecordToObject
 
RecordToStrings - Class in org.surge
This actor converts a record into a string of labels and a string of values.
RecordToStrings(CompositeEntity, String) - Constructor for class org.surge.RecordToStrings
Construct a RecordToStrings source with the given container and name.
RecordType - Class in ptolemy.data.type
A class representing the type of a RecordToken.
RecordType(String[], Type[]) - Constructor for class ptolemy.data.type.RecordType
Construct a new RecordType with the specified labels and types.
RecordType(Map<String, RecordType.FieldType>) - Constructor for class ptolemy.data.type.RecordType
Construct a RecordType with the labels and values specified by a given Map object.
RecordUpdater - Class in ptolemy.actor.lib
On each firing, read one token from each input port and assemble them into a RecordToken that contains the union of the original input record and each of the update ports.
RecordUpdater(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.RecordUpdater
Construct a RecordUpdater with the given container and name.
RecordValue - Class in org.kepler.spark.type
A data type used to serialize Ptolemy Record tokens.
RecordValue() - Constructor for class org.kepler.spark.type.RecordValue
Default constructor.
RecordValue(RecordToken) - Constructor for class org.kepler.spark.type.RecordValue
Create a new RecordValue for a record token.
RecordValue - Class in org.kepler.stratosphere.type
A PACT Value for Ptolemy record tokens.
RecordValue() - Constructor for class org.kepler.stratosphere.type.RecordValue
 
RecordValue(CharSequence) - Constructor for class org.kepler.stratosphere.type.RecordValue
 
RecordValue(StringValue) - Constructor for class org.kepler.stratosphere.type.RecordValue
 
RecordValue(StringValue, int, int) - Constructor for class org.kepler.stratosphere.type.RecordValue
 
RectangleAttribute - Class in ptolemy.vergil.kernel.attributes
This is an attribute that is rendered as a rectangle.
RectangleAttribute(NamedObj, String) - Constructor for class ptolemy.vergil.kernel.attributes.RectangleAttribute
Construct an attribute with the given name contained by the specified container.
recurseList(DBWhereOperator, StringBuffer, int, boolean) - Method in class org.ecoinformatics.seek.querybuilder.DBWherePanel
Recurses through the "tree" of operators and creates a textual rendering of the operators and conditions
recurseWhere(StringBuffer, DBWhereIFace, int) - Static method in class org.ecoinformatics.seek.querybuilder.DBQueryDefParserEmitter
Recurses through the "tree" of operators and creates a textual rendering of the operators and conditions
recursionActor - Variable in class ptolemy.domains.ddf.lib.ActorRecursion
A StringParameter representing the name of the composite actor to clone from.
recursive - Variable in class org.geon.FileCopy
If false, then only copy the files, not the sub-directories, in the source location.
recursive - Variable in class org.kepler.actor.ssh.FileCopier
Specifying whether directories can be copied recursively.
recursive - Variable in class org.kepler.actor.ssh.FileRemover
Specifying whether directories can be removed recursively.
recursive - Variable in class org.kepler.hadoop.actor.HDFSRemover
If false and the folder has non-empty sub-folders, an exception will thrown.
recursive - Variable in class org.sdm.spa.actors.transport.GenericFileCopier
Specifying whether directories can be copied recursively.
recursive - Variable in class org.srb.SRBGetMD
-r ; Returns metadata recursively for directories.
recursive - Variable in class ptolemy.actor.lib.io.DirectoryListing
Whether files in the subdirectories should be searched as well.
RecursiveFileFilter - Class in ptolemy.util
A file name filter that can recursively list files in a directory, including those in subdirectories.
RecursiveFileFilter(boolean, boolean, boolean) - Constructor for class ptolemy.util.RecursiveFileFilter
Construct a recursive file filter.
RecursiveFileFilter(boolean, boolean, boolean, boolean, boolean, String) - Constructor for class ptolemy.util.RecursiveFileFilter
Construct a recursive file filter.
RecursiveFileFilter(boolean, boolean, boolean, boolean, boolean, String, boolean) - Constructor for class ptolemy.util.RecursiveFileFilter
Construct a recursive file filter.
RecursiveLattice - Class in ptolemy.actor.lib
A recursive (all-pole) filter with a lattice structure.
RecursiveLattice(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.RecursiveLattice
Construct an actor with the given container and name.
RED - Static variable in interface org.kepler.dataproxy.datasource.DataSourceInterface
 
RED - Static variable in class org.kepler.sms.Color
 
redo() - Method in class ptolemy.gui.UndoListener
Perform a redo.
redo() - Method in class ptolemy.kernel.undo.UndoStackAttribute
Remove the top redo action and execute it.
redo() - Method in class ptolemy.plot.EditablePlot
Redo the latest signal editing operation that was undone by calling undo(), if there was one.
redo() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Redo the last undone change on the model.
RedoAction() - Constructor for class ptolemy.gui.UndoListener.RedoAction
 
RedoChangeRequest - Class in ptolemy.kernel.undo
A change request to redo.
RedoChangeRequest(Object, NamedObj) - Constructor for class ptolemy.kernel.undo.RedoChangeRequest
Construct a change request to be executed in the specified context.
redrawView() - Method in class org.kepler.reporting.gui.ReportDesignerPanel
redrawView() redraws the view, from getReportItemPanels using GridBagConstraints
Reduce - Class in org.kepler.ddp.actor.pattern
An actor for the Reduce DDP pattern.
Reduce(CompositeEntity, String) - Constructor for class org.kepler.ddp.actor.pattern.Reduce
Construct a new Reduce in a container with a given name.
Reduce(Workspace) - Constructor for class org.kepler.ddp.actor.pattern.Reduce
Construct a new Reduce in a workspace.
reduce(Text, Iterable<TaggedValue>, Reducer<WritableComparable, TaggedValue, WritableComparable, TaggedValue>.Context) - Method in class org.kepler.hadoop.mapreduce.Combiner4TagValue
 
reduce(WritableComparable, Iterable<Writable>, Reducer<WritableComparable, Writable, WritableComparable, Writable>.Context) - Method in class org.kepler.hadoop.mapreduce.MapReduce4Kepler.Reducer4Kepler
 
reduce(WritableComparable, Iterable<TaggedValue>, Reducer<WritableComparable, TaggedValue, WritableComparable, Writable>.Context) - Method in class org.kepler.hadoop.mapreduce.Reducer4CoGroup
 
reduce(WritableComparable, Iterable<TaggedValue>, Reducer<WritableComparable, TaggedValue, WritableComparable, Writable>.Context) - Method in class org.kepler.hadoop.mapreduce.Reducer4Match
 
reduce(Iterator<Record>, Collector<Record>) - Method in class org.kepler.stratosphere.stub.KeplerReduceStub
Transfer the data from Stratosphere to Kepler, execute the workflow, and then transfer the data from Kepler to Stratosphere.
reduce(Iterator<Record>, Collector<Record>) - Method in class org.kepler.stratosphere.stub.ScriptEngineReduceStub
 
reduce() - Method in class ptolemy.moml.unit.UnitExpr
Reduce a UnitExpr to produce a UnitExpr that has at most one Unit.
REDUCE_CHILD_ENV - Static variable in class org.kepler.hadoop.director.HadoopEngine
 
ReduceInput - Class in org.kepler.ddp.actor.pattern.stub
A stub actor that writes data into workflows for the Reduce pattern.
ReduceInput(CompositeEntity, String) - Constructor for class org.kepler.ddp.actor.pattern.stub.ReduceInput
Construct a new ReduceInput in a container with a given name.
ReduceOperator - Class in org.kepler.spark.operator
An operator for reduce.
ReduceOperator(Function2<?, ?, ?>, String) - Constructor for class org.kepler.spark.operator.ReduceOperator
Create a new ReduceOperator that will not generate new keys.
ReduceOperator(PairFlatMapFunction<Iterator<Tuple2<Object, Iterable<Object>>>, Object, Object>, String) - Constructor for class org.kepler.spark.operator.ReduceOperator
Create a new ReduceOperator that can generate new keys.
Reducer4CoGroup - Class in org.kepler.hadoop.mapreduce
This class include a reducer for CoGroup actor.
Reducer4CoGroup() - Constructor for class org.kepler.hadoop.mapreduce.Reducer4CoGroup
 
Reducer4Kepler() - Constructor for class org.kepler.hadoop.mapreduce.MapReduce4Kepler.Reducer4Kepler
 
Reducer4Match - Class in org.kepler.hadoop.mapreduce
This class include a reducer for Match actor.
Reducer4Match() - Constructor for class org.kepler.hadoop.mapreduce.Reducer4Match
 
reference - Variable in class org.kepler.gis.actor.conversions.VectorToRaster
Raster to use for height, width, and cell size.
reference - Variable in class org.kepler.gui.state.StateChangeEvent
 
referenceInputParam - Variable in class org.kepler.data.datasource.dataturbine.DataTurbine
For Subscribe mode: Any of "newest", "oldest", "absolute", "next", or "previous".
REFERENCESTRING - Static variable in interface org.kepler.objectmanager.data.db.Constraint
 
refillId(IOPort, int) - Method in class org.kepler.provenance.PortConnector
Restore the previous Id to a port and channel.
refillPortEvent(IOPortRefillEvent) - Method in class org.kepler.provenance.Recording
Record a port event.
refillPortEvent(IOPortRefillEvent) - Method in class org.kepler.provenance.sql.SQLRecordingV8
Record a port refill event.
refinedStepSize() - Method in interface ptolemy.actor.continuous.ContinuousStepSizeController
Implementations of this method should return the suggested refined step size for restarting the current integration.
refinedStepSize() - Method in class ptolemy.domains.continuous.kernel.ContinuousDirector
Return the refined step size, which is the minimum of the current step size and the suggested step size of all actors that implement ContinuousStepSizeController and that also ensures that we do not pass a breakpoint.
refinedStepSize() - Method in class ptolemy.domains.continuous.kernel.ContinuousIntegrator
Return the estimation of the refined next step size.
refinedStepSize() - Method in class ptolemy.domains.continuous.kernel.HybridModalDirector
Return the minimum of the step sizes suggested by any actors that were fired in the current iteration.
refinedStepSize() - Method in class ptolemy.domains.continuous.lib.LevelCrossingDetector
Return the refined step size if there is a missed event, otherwise return the current step size.
Refinement - Class in ptolemy.actor.lib.hoc
This typed composite actor supports mirroring of its ports in its container (which is required to be a MultiCompositeActor), which in turn assures mirroring of ports in each of the refinements and the controller.
Refinement(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.hoc.Refinement
Construct a modal controller with a name and a container.
Refinement(Workspace) - Constructor for class ptolemy.actor.lib.hoc.Refinement
Construct a Refinement in the specified workspace with no container and an empty string as a name.
Refinement - Class in ptolemy.domains.modal.modal
This typed composite actor supports mirroring of its ports in its container (which is required to be a ModalModel), which in turn assures mirroring of ports in each of the refinements and the controller.
Refinement(CompositeEntity, String) - Constructor for class ptolemy.domains.modal.modal.Refinement
Construct a modal controller with a name and a container.
RefinementActor - Interface in ptolemy.domains.modal.kernel
An interface for actors that act as refinements of states in FSMs or events in Ptera models.
refinementClassName() - Method in class ptolemy.actor.lib.hoc.Case
Return the class name for refinements that this Case actor expects to contain.
refinementClassName - Variable in class ptolemy.domains.modal.modal.RefinementSuggestion
The suggested class name of the refinement.
RefinementExtender - Class in ptolemy.domains.modal.modal
An attribute to add a class to the list of refinement classes for a state.
RefinementExtender(NamedObj, String) - Constructor for class ptolemy.domains.modal.modal.RefinementExtender
Construct a refinement extender attribute with the given name contained by the specified entity.
refinementName - Variable in class ptolemy.domains.modal.kernel.State
Attribute specifying one or more names of refinements.
refinementName - Variable in class ptolemy.domains.modal.kernel.Transition
Deprecated.
Use immediate transitions.
RefinementPort - Class in ptolemy.actor.lib.hoc
A port for controllers and refinements in modal models.
RefinementPort(Workspace) - Constructor for class ptolemy.actor.lib.hoc.RefinementPort
Construct a port in the given workspace.
RefinementPort(ComponentEntity, String) - Constructor for class ptolemy.actor.lib.hoc.RefinementPort
Construct a port with a containing actor and a name that is neither an input nor an output.
RefinementPort - Class in ptolemy.domains.modal.modal
A port for controllers and refinements in modal models.
RefinementPort(ComponentEntity, String) - Constructor for class ptolemy.domains.modal.modal.RefinementPort
Construct a port with a containing actor and a name that is neither an input nor an output.
RefinementPort(Workspace) - Constructor for class ptolemy.domains.modal.modal.RefinementPort
Construct a port in the given workspace.
RefinementSuggestion - Class in ptolemy.domains.modal.modal
An attribute that suggests the class of the container for the associated state or actor.
RefinementSuggestion(NamedObj, String) - Constructor for class ptolemy.domains.modal.modal.RefinementSuggestion
Construct an attribute with the given name contained by the specified entity.
ReflectComposite - Class in ptolemy.actor.lib.hoc
A composite that contains one actor and mirrors the ports and parameters of that actor.
ReflectComposite(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.hoc.ReflectComposite
Create an actor with a name and a container.
ReflectComposite(Workspace) - Constructor for class ptolemy.actor.lib.hoc.ReflectComposite
Construct a ReflectComposite in the specified workspace with no container and an empty string as a name.
ReflectComposite(CompositeEntity, String, boolean) - Constructor for class ptolemy.actor.lib.hoc.ReflectComposite
Create an actor with a name and a container that optionally mirrors the ports that are instances of ParameterPort.
ReflectComposite.ReflectCompositeContents - Class in ptolemy.actor.lib.hoc
This is a specialized composite actor for use in ReflectComposite.
ReflectCompositeContents(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.hoc.ReflectComposite.ReflectCompositeContents
Construct an actor with a name and a container.
reflectionCoefficients - Variable in class ptolemy.actor.lib.Lattice
The reflection coefficients.
reflectionCoefficients - Variable in class ptolemy.actor.lib.LevinsonDurbin
The output for lattice filter coefficients for a prediction error filter.
reflectionCoefficients - Variable in class ptolemy.actor.lib.RecursiveLattice
The reflection coefficients.
refresh - Variable in class org.ecoinformatics.seek.datasource.EcogridCompressedDataCacheItem
 
refresh() - Method in class org.ecoinformatics.seek.querybuilder.DBTableJoin
Refreshes the DesktopPane
refresh() - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneAdvanced
Makes the entire Desktop object repaint itself
refresh() - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneIntermediate
Makes the entire Desktop object repaint itself
refresh() - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
impl of abstract method
refresh() - Method in class org.kepler.modulemanager.gui.DownloadedModulesPanel
 
refresh(DataCacheListener) - Method in class org.kepler.objectmanager.cache.DataCacheObject
Refreshes the data from the original source
refresh(NamedOntModel) - Method in class org.kepler.tagging.gui.OntologyDisplayUI
 
refresh() - Method in class org.kepler.tagging.gui.OntologyEditorUI
 
refresh - Variable in class ptolemy.actor.lib.hoc.MobileModel
This Parameter specifies whether to replace the previous model when there is model changing request or not.
refresh - Variable in class ptolemy.actor.lib.Reader
Deprecated.
Refresh between each readings.
refresh - Variable in class ptolemy.actor.lib.URLReader
The flag that indicates whether to refresh between each reading.
refreshAuthNamespace() - Method in class org.kepler.util.AuthNamespace
Read in the Authority and Namespace from the AuthorizedNamespace file.
refreshData() - Method in class org.kepler.gui.ComponentLibraryPreferencesTab.ComponentSourceTableModel
 
RefreshFolderAction - Class in org.kepler.gui.kar
 
RefreshFolderAction(TableauFrame) - Constructor for class org.kepler.gui.kar.RefreshFolderAction
Constructor
refreshFolderModelForFolder(File) - Method in class org.kepler.objectmanager.cache.LocalRepositoryManager
 
refreshFolderModelForRepo(LocalRepositoryManager.LocalRepository) - Method in class org.kepler.objectmanager.cache.LocalRepositoryManager
Refresh the folder model for the specified local repository.
refreshFrameAfterSave - Variable in class org.kepler.gui.kar.ExportArchiveAction
 
refreshJTrees() - Method in class org.kepler.objectmanager.library.LibraryManager
Refresh and redraw any JTrees that the LibraryManager is keeping track of.
refreshName() - Method in class org.kepler.gui.TabbedCompositeTabComponent
 
refreshOutlineTree() - Method in class org.kepler.gui.WorkflowOutlinePanel
 
refreshParametersAndPorts() - Method in class ptolemy.vergil.basic.DocAttribute
For each parameter and port in the container, create a parameter with the same name appended with either " (port)", " (port-parameter)", or " (parameter)".
refreshValues() - Method in class org.kepler.gui.kar.KarManifestViewer
Update the textfield and textarea to reflect the current LSID and LSID referral list values.
refreshValues() - Method in class org.kepler.gui.lsid.LSIDViewer
Update the textfield and textarea to reflect the current LSID and LSID referral list values.
regActor(Actor) - Method in class org.kepler.provenance.opm.OpenProvenanceModelXML
Deprecated.
Register an actor.
regActor(Actor) - Method in class org.kepler.provenance.Recording
Register an actor.
regActor(Actor) - Method in class org.kepler.provenance.SimpleFiringRecording
Register an actor.
regActor(Actor) - Method in class org.kepler.provenance.sql.SQLRecording
Register an actor.
regActor(Actor) - Method in class org.kepler.provenance.TextFileRecording
Register an actor.
regActor(Actor) - Method in class org.kepler.provenance.XMLRecording
Deprecated.
 
regContents() - Method in class org.kepler.provenance.Recording
Returns true if provenance recorder should register workflow contents should be registered.
regContents() - Method in class org.kepler.provenance.SimpleFiringRecording
Always register the contents of the workflow.
regContents() - Method in class org.kepler.provenance.sql.SQLRecordingV8
Returns true if workflow contents should be registered.
regDirector(Director) - Method in class org.kepler.provenance.Recording
Register a director.
regDirector(Director) - Method in class org.kepler.provenance.sql.SQLRecording
Register a director.
regDirector(Director) - Method in class org.kepler.provenance.TextFileRecording
Register a director.
regDirector(Director) - Method in class org.kepler.provenance.XMLRecording
Deprecated.
 
regenerateAutoCompletions() - Method in class org.kepler.tagging.gui.AutoCompleteComboBox
 
region - Variable in class org.geon.NextDiagram
 
region - Variable in class org.geon.PointinPolygon
The point's region.
region - Variable in class org.geon.PointinPolygonXY
The point's region.
Region - Variable in class org.geon.PolygonUtil
 
region - Variable in class org.geon.StringToPolygon
 
regions - Variable in class org.kepler.gis.actor.bbox.CoverBoundingBox
The non-overlapping regions that cover the bounding box.
regions - Variable in class org.kepler.gis.actor.SplitBoundingBox
Deprecated.
The non-overlapping regions that cover the bounding box.
register(Row, UpdateType, Plot) - Method in interface org.kepler.plotting.PlottingController
 
Register - Class in ptolemy.domains.de.lib
A register is a stateful actor with a trigger port that accepts read requests.
Register(CompositeEntity, String) - Constructor for class ptolemy.domains.de.lib.Register
Construct an actor with the given container and name.
registerAdditionalListener(DropTargetListener) - Method in class ptolemy.vergil.basic.EditorDropTarget
Register additional DropTargetListeners.
registerAtomicallyTaggableClass(Class) - Static method in class org.kepler.tagging.Tagging
If an object is tagged that is NOT an instanceof any of the classes that have been registered as atomically taggable, then the change is in limbo, and the effigy of the Kepler graph is explicitly set as changed to force a save dialog on closing.
registerConstant(String, Object) - Static method in class ptolemy.data.expr.PtParser
Add a constant to the list of constants that the parser recognizes.
registerExtension(String) - Method in class ptolemy.gui.ExtensionFilenameFilter
Register an additional extension to accept.
registerFunctionClass(String) - Static method in class ptolemy.data.expr.PtParser
Add a class to the list of classes that the parser searches when a function call is encountered.
registerKAREntryHandlers() - Method in class org.kepler.kar.KAREntryHandlerFactory
Get all the KAREntryHandlers that are specified in the configuration and add them to the CacheManager.
registerListener(DropTargetListener) - Method in class org.kepler.gui.CanvasDropTargetListener
register a listener to listen to this listener. in this way, any class can get an instance of this listener without having to get a reference to the Canvas, then listen for canvas events
registerListener(CommunicationAspectListener) - Method in interface ptolemy.actor.CommunicationAspect
Add a communication aspect monitor to the list of listeners.
registerPublisherPort(String, IOPort) - Method in class ptolemy.actor.CompositeActor
Register a "published port" coming from a publisher.
registerPublisherPort(String, IOPort, boolean) - Method in class ptolemy.actor.CompositeActor
Register a "published port" coming from a publisher.
registerUnitCategory(String) - Static method in class ptolemy.data.unit.UnitUtilities
Register the specified unit category name.
registerWeight(Element) - Method in class ptolemy.graph.ElementList
Associate a graph element to its weight given the relevant mapping of weights to elements, and the set of unweighted elements of the same type (nodes or edges).
registry - Variable in class org.kepler.objectmanager.repository.Repository
 
registryauth - Variable in class org.kepler.objectmanager.repository.Repository
 
RegistryClientContainer(RegistryServiceClient, String) - Constructor for class org.kepler.objectmanager.repository.EcogridRepository.RegistryClientContainer
Constructor
registryEntries2EcogridServices(RegistryEntryType[], boolean) - Static method in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
 
RegistrySearchDialog - Class in org.ecoinformatics.seek.ecogrid
This class represents a dialog box for searching registry
RegistrySearchDialog(EcogridPreferencesTab, String, Vector) - Constructor for class org.ecoinformatics.seek.ecogrid.RegistrySearchDialog
Construct of this dialog
regLink(NamedObj, NamedObj) - Method in class org.kepler.provenance.Recording
Register a link between two endpoints.
regLink(NamedObj, NamedObj) - Method in class org.kepler.provenance.sql.SQLRecording
Register a link between two endpoints.
regLink(NamedObj, NamedObj) - Method in class org.kepler.provenance.sql.SQLRecordingV8
Register a link between two endpoints.
regLink(NamedObj, NamedObj) - Method in class org.kepler.provenance.TextFileRecording
Register a link between two endpoints.
regLink(NamedObj, NamedObj) - Method in class org.kepler.provenance.XMLRecording
Deprecated.
Register a link between two endpoints.
regParameter(NamedObj) - Method in class org.kepler.provenance.Recording
Register a parameter.
regParameter(NamedObj) - Method in class org.kepler.provenance.sql.SQLRecording
Register a parameter.
regParameter(NamedObj) - Method in class org.kepler.provenance.sql.SQLRecordingV7
Register a parameter.
regParameter(NamedObj) - Method in class org.kepler.provenance.sql.SQLRecordingV8
Register a parameter.
regParameter(NamedObj) - Method in class org.kepler.provenance.TextFileRecording
Register a parameter.
regParameter(NamedObj) - Method in class org.kepler.provenance.XMLRecording
Deprecated.
 
regPort(TypedIOPort) - Method in class org.kepler.profiling.gui.ExecutionMonitorPanel.ExecutionMonitorRecording
Register a port.
regPort(TypedIOPort) - Method in class org.kepler.provenance.opm.OpenProvenanceModelXML
Deprecated.
Register a port or portparameter.
regPort(TypedIOPort) - Method in class org.kepler.provenance.prov.ProvRecording
Register a port or portparameter.
regPort(TypedIOPort) - Method in class org.kepler.provenance.Recording
Register a port or portparameter.
regPort(TypedIOPort) - Method in class org.kepler.provenance.sql.SQLRecording
Register a port or portparameter.
regPort(TypedIOPort) - Method in class org.kepler.provenance.sql.SQLRecordingV8
Register a port or portparameter.
regPort(TypedIOPort) - Method in class org.kepler.provenance.TextFileRecording
Register a port or portparameter.
regPort(TypedIOPort) - Method in class org.kepler.provenance.XMLRecording
Deprecated.
Register a port or portparameter.
regRelation(IORelation) - Method in class org.kepler.provenance.Recording
Register a relation.
regRelation(IORelation) - Method in class org.kepler.provenance.sql.SQLRecording
Register a relation.
regRelation(IORelation) - Method in class org.kepler.provenance.sql.SQLRecordingV8
Register a relation.
regRelation(IORelation) - Method in class org.kepler.provenance.TextFileRecording
Register a relation.
regRelation(IORelation) - Method in class org.kepler.provenance.XMLRecording
Deprecated.
Register a relation.
regularExpression - Variable in class ptolemy.actor.lib.string.StringReplace
If true, interpret the pattern as a regular expression.
regularFormat - Static variable in class ptolemy.data.TokenUtilities
The format that is used to print floating point numbers that are not very large, or very small.
ReInit(InputStream) - Method in class ptolemy.data.expr.MatrixParser
Reinitialise.
ReInit(InputStream, String) - Method in class ptolemy.data.expr.MatrixParser
Reinitialise.
ReInit(Reader) - Method in class ptolemy.data.expr.MatrixParser
Reinitialise.
ReInit(MatrixParserTokenManager) - Method in class ptolemy.data.expr.MatrixParser
Reinitialise.
ReInit(SimpleCharStream) - Method in class ptolemy.data.expr.MatrixParserTokenManager
Reinitialise parser.
ReInit(SimpleCharStream, int) - Method in class ptolemy.data.expr.MatrixParserTokenManager
Reinitialise parser.
ReInit(InputStream) - Method in class ptolemy.data.expr.PtParser
Reinitialise.
ReInit(InputStream, String) - Method in class ptolemy.data.expr.PtParser
Reinitialise.
ReInit(Reader) - Method in class ptolemy.data.expr.PtParser
Reinitialise.
ReInit(PtParserTokenManager) - Method in class ptolemy.data.expr.PtParser
Reinitialise.
ReInit(SimpleCharStream) - Method in class ptolemy.data.expr.PtParserTokenManager
Reinitialise parser.
ReInit(SimpleCharStream, int) - Method in class ptolemy.data.expr.PtParserTokenManager
Reinitialise parser.
ReInit(Reader, int, int, int) - Method in class ptolemy.data.expr.SimpleCharStream
Reinitialise.
ReInit(Reader, int, int) - Method in class ptolemy.data.expr.SimpleCharStream
Reinitialise.
ReInit(Reader) - Method in class ptolemy.data.expr.SimpleCharStream
Reinitialise.
ReInit(InputStream, String, int, int, int) - Method in class ptolemy.data.expr.SimpleCharStream
Reinitialise.
ReInit(InputStream, int, int, int) - Method in class ptolemy.data.expr.SimpleCharStream
Reinitialise.
ReInit(InputStream, String) - Method in class ptolemy.data.expr.SimpleCharStream
Reinitialise.
ReInit(InputStream) - Method in class ptolemy.data.expr.SimpleCharStream
Reinitialise.
ReInit(InputStream, String, int, int) - Method in class ptolemy.data.expr.SimpleCharStream
Reinitialise.
ReInit(InputStream, int, int) - Method in class ptolemy.data.expr.SimpleCharStream
Reinitialise.
ReInit(Reader, int, int, int) - Method in class ptolemy.moml.unit.SimpleCharStream
Reinitialise.
ReInit(Reader, int, int) - Method in class ptolemy.moml.unit.SimpleCharStream
Reinitialise.
ReInit(Reader) - Method in class ptolemy.moml.unit.SimpleCharStream
Reinitialise.
ReInit(InputStream, String, int, int, int) - Method in class ptolemy.moml.unit.SimpleCharStream
Reinitialise.
ReInit(InputStream, int, int, int) - Method in class ptolemy.moml.unit.SimpleCharStream
Reinitialise.
ReInit(InputStream, String) - Method in class ptolemy.moml.unit.SimpleCharStream
Reinitialise.
ReInit(InputStream) - Method in class ptolemy.moml.unit.SimpleCharStream
Reinitialise.
ReInit(InputStream, String, int, int) - Method in class ptolemy.moml.unit.SimpleCharStream
Reinitialise.
ReInit(InputStream, int, int) - Method in class ptolemy.moml.unit.SimpleCharStream
Reinitialise.
ReInit(InputStream) - Method in class ptolemy.moml.unit.UParser
Reinitialise.
ReInit(InputStream, String) - Method in class ptolemy.moml.unit.UParser
Reinitialise.
ReInit(Reader) - Method in class ptolemy.moml.unit.UParser
Reinitialise.
ReInit(UParserTokenManager) - Method in class ptolemy.moml.unit.UParser
Reinitialise.
ReInit(SimpleCharStream) - Method in class ptolemy.moml.unit.UParserTokenManager
Reinitialise parser.
ReInit(SimpleCharStream, int) - Method in class ptolemy.moml.unit.UParserTokenManager
Reinitialise parser.
reinitializeTab() - Method in class org.kepler.gui.ComponentLibraryTab
 
RELATED_GAP_COLSPEC - Static variable in class com.jgoodies.forms.factories.FormFactory
Describes a logical horizontal gap between two related components.
RELATED_GAP_ROWSPEC - Static variable in class com.jgoodies.forms.factories.FormFactory
Describes a logical vertical gap between two related components.
Relation - Class in ptolemy.kernel
A Relation links ports, and therefore the entities that contain them.
Relation() - Constructor for class ptolemy.kernel.Relation
Construct a relation in the default workspace with an empty string as its name.
Relation(String) - Constructor for class ptolemy.kernel.Relation
Construct a relation in the default workspace with the given name.
Relation(Workspace) - Constructor for class ptolemy.kernel.Relation
Construct a relation in the given workspace with an empty string as a name.
Relation(Workspace, String) - Constructor for class ptolemy.kernel.Relation
Construct a relation in the given workspace with the given name.
relational() - Method in class ptolemy.data.expr.PtParser
 
RelationController - Class in ptolemy.vergil.kernel
This class provides interaction with nodes that represent Ptolemy II relations.
RelationController(GraphController) - Constructor for class ptolemy.vergil.kernel.RelationController
Create a relation controller associated with the specified graph controller.
RelationController.RelationRenderer - Class in ptolemy.vergil.kernel
The renderer for relation node.
RelationCreator() - Constructor for class ptolemy.vergil.actor.ActorEditorGraphController.RelationCreator
 
relationGroupList() - Method in class ptolemy.kernel.Relation
Return the list of relations in the relation group containing this relation.
relationList() - Method in class ptolemy.actor.LazyTypedCompositeActor
List the relations contained by this entity.
RelationList - Class in ptolemy.domains.modal.kernel
A RelationList object contains a list of relations of a guard expression.
RelationList() - Constructor for class ptolemy.domains.modal.kernel.RelationList
Construct a relation list.
relationList() - Method in class ptolemy.kernel.CompositeEntity
List the relations contained by this entity.
RelationNode - Class in ptolemy.domains.modal.kernel
An instance of the RelationNode class stores the type and difference information of a relation.
RelationNode(int, double) - Constructor for class ptolemy.domains.modal.kernel.RelationNode
Construct a relation node with given type and difference information.
RelationRenderer() - Constructor for class ptolemy.vergil.kernel.RelationController.RelationRenderer
 
RelationType - Class in ptolemy.domains.modal.kernel
A static class contains a list of types for relation node.
RelationType() - Constructor for class ptolemy.domains.modal.kernel.RelationType
 
RelationWidthChanges - Class in ptolemy.moml.filter
When this class is registered with the MoMLParser.setMoMLFilter() method, it will cause MoMLParser to filter so that models from earlier releases will run in the current release.
RelationWidthChanges() - Constructor for class ptolemy.moml.filter.RelationWidthChanges
 
RelationWidthInference - Class in ptolemy.actor
A class that offers convenience utility methods to infer the widths of relations in a composite actor.
RelationWidthInference(CompositeActor) - Constructor for class ptolemy.actor.RelationWidthInference
Create RelationWidthInference, the algorithm for width inference.
relative - Variable in class ptolemy.actor.lib.io.DirectoryListing
If true, then produce an array with file names relative to the specified directory.
relativeEntropy(double[], double[]) - Static method in class ptolemy.math.DoubleArrayStat
Given two array's of probabilities, calculate the relative entropy aka Kullback Leibler distance, D(p || q), (in bits) between the two probability mass functions.
RelativeLinkFigure - Class in ptolemy.vergil.kernel
A figure for drawing a link between a relative locatable and its referenced object.
RelativeLinkFigure(RelativeLocation) - Constructor for class ptolemy.vergil.kernel.RelativeLinkFigure
Construct a figure to draw the link of a relative locatable object.
RelativeLocatable - Interface in ptolemy.vergil.basic
An interface for objects that can be located visually relative to another object.
RelativeLocation - Class in ptolemy.vergil.basic
An attribute used to store a relative visual location.
RelativeLocation(NamedObj, String) - Constructor for class ptolemy.vergil.basic.RelativeLocation
Construct an instance.
relativeTo - Variable in class ptolemy.vergil.basic.RelativeLocation
The name of the object this location is relative to.
relativeToElementName - Variable in class ptolemy.vergil.basic.RelativeLocation
The element name of the object this location is relative to.
releaseContext() - Static method in class org.kepler.spark.actor.SparkConnection
 
releaseReadPermission() - Method in class ptolemy.kernel.util.Workspace
Release read permission on the workspace held by the current thread, and return the depth of the nested calls to getReadAccess().
reloadAllMenubars() - Static method in class org.kepler.gui.MenuMapper
Remap all open menubars.
reloadPtolemyMenus() - Method in class org.kepler.gui.MenuMapper
Remap the menu.
reloadTags(boolean, TagReloadType) - Method in class org.kepler.tagging.TaggingContextManager
 
Remainder - Class in ptolemy.actor.lib
Compute the remainder after dividing the input by the divisor.
Remainder(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Remainder
Construct an actor with the given container and name.
remainder(double, double) - Static method in class ptolemy.math.ExtendedMath
Compute the remainder after dividing the first argument by the second argument as prescribed by the IEEE 754 standard.
remAttributes(String) - Method in class org.camera.service.CAMERARESTService
Parameters whose names start with resName are removed by this method.
remoteDir - Variable in class org.srb.SPut
Where to upload the files.
RemoteExec - Class in org.kepler.ssh
 
RemoteExec() - Constructor for class org.kepler.ssh.RemoteExec
 
remoteFileName - Variable in class org.srb.SRBReader
The SRB file to be read.
remoteFileName - Variable in class org.srb.SRBWriter
The SRB file to be written
remoteFilePath - Variable in class org.geon.Scp
Remote file path.
remotefiles - Variable in class org.kepler.actor.job.GenericJobLauncher
The string array of remote input files.
remotefiles - Variable in class org.kepler.actor.job.JobCreator
The string array of remote input files.
RemoteKAREntityLibrary - Class in org.kepler.moml
Represents a remote kar file on search result panel
RemoteKAREntityLibrary() - Constructor for class org.kepler.moml.RemoteKAREntityLibrary
Default constructor
RemoteKAREntityLibrary(Workspace) - Constructor for class org.kepler.moml.RemoteKAREntityLibrary
Constructor
RemoteKAREntityLibrary(CompositeEntity, String) - Constructor for class org.kepler.moml.RemoteKAREntityLibrary
Constructor
RemoteKARErrorEntityLibrary - Class in org.kepler.moml
A convenience class to determine the different types of EntityLibraries in the trees for assigning icons.
RemoteKARErrorEntityLibrary() - Constructor for class org.kepler.moml.RemoteKARErrorEntityLibrary
 
RemoteKARErrorEntityLibrary(Workspace) - Constructor for class org.kepler.moml.RemoteKARErrorEntityLibrary
 
RemoteKARErrorEntityLibrary(CompositeEntity, String) - Constructor for class org.kepler.moml.RemoteKARErrorEntityLibrary
 
RemoteKARErrorPopup - Class in org.kepler.gui.popups
Subclass of LibraryPopup that handles the popup menu for KARs inside the library that do not have their module dependencies satisfied by the current module configuration.
RemoteKARErrorPopup(TreePath, Component) - Constructor for class org.kepler.gui.popups.RemoteKARErrorPopup
 
RemoteMachine - Variable in class org.sdm.spa.ProcessFileRT
Target in user@host:port format.
RemoteOntologyComponentPopup - Class in org.kepler.gui.popups
Subclass of LibraryPopup that handles library items that are components and not inside of a KAR (i.e. components inside ontologies).
RemoteOntologyComponentPopup(TreePath, Component) - Constructor for class org.kepler.gui.popups.RemoteOntologyComponentPopup
 
remotePath - Variable in class org.geon.FTPClient
path to remote file (begins and ends with '/').
REMOTERECEIVERS - Static variable in class ptolemy.actor.IOPort
Indicate that the description(int) method should include receivers remotely connected to this port (if any).
RemoteRepositoryEntityLibrary - Class in org.kepler.moml
A convenience class to determine the different types of EntityLibraries in the trees for assigning icons.
RemoteRepositoryEntityLibrary() - Constructor for class org.kepler.moml.RemoteRepositoryEntityLibrary
 
RemoteRepositoryEntityLibrary(Workspace) - Constructor for class org.kepler.moml.RemoteRepositoryEntityLibrary
 
RemoteRepositoryEntityLibrary(CompositeEntity, String) - Constructor for class org.kepler.moml.RemoteRepositoryEntityLibrary
 
RemoteStoreRunsTracker - Class in org.kepler.util
 
RemoteStoreRunsTracker(String) - Constructor for class org.kepler.util.RemoteStoreRunsTracker
Constructor.
RemoteStoreRunsTracker.TrackerRunAttribute - Enum in org.kepler.util
 
RemovableSemanticType - Class in org.kepler.sms
Created by IntelliJ IDEA.
RemovableSemanticType(SemanticType, boolean) - Constructor for class org.kepler.sms.RemovableSemanticType
 
remove(DBWhereIFace) - Method in class org.ecoinformatics.seek.querybuilder.DBWhereModel
Remove item from list, if operator, remove its closure and all the children too
remove(DBWhereIFace) - Method in class org.ecoinformatics.seek.querybuilder.DBWhereOperator
Removes an item
remove(int) - Method in class org.json.JSONArray
Remove an index and close the hole.
remove(String) - Method in class org.json.JSONObject
Remove a name and its value, if present.
remove(KeplerGraphFrame) - Method in class org.kepler.gui.ModelToFrameManager
Remove all mappings to the given KeplerGraphFrame.
remove(String) - Static method in class org.kepler.job.JobFactory
Remove an existing job.
remove(JFrame) - Method in class org.kepler.kar.KARManager
 
remove(int) - Method in class org.kepler.objectmanager.library.LibSearch
Remove all of the entries from the table that match the given KeplerLSID.
remove(String) - Method in class org.kepler.provenance.Recording
A NamedObj was removed.
remove(String) - Method in class org.kepler.provenance.TextFileRecording
 
remove - Variable in class org.mlc.swing.layout.ComponentDef
 
remove(String, char) - Static method in class org.sdm.spa.Util
Method remove.
remove() - Method in class ptolemy.actor.LazyTypedCompositeActor.ContainedObjectsIterator
The remove() method is not supported because is is not supported in NamedObj.ContainedObjectsIterator.remove().
remove() - Method in interface ptolemy.actor.lib.gui.DisplayInterface
Remove the display from the current container, if there is one.
remove() - Method in class ptolemy.actor.lib.gui.DisplayJavaSE
Remove the display from the current container, if there is one.
remove() - Method in interface ptolemy.actor.lib.gui.PlotterBaseInterface
Remove the plot from the current container, if there is one.
remove() - Method in class ptolemy.actor.lib.gui.PlotterBaseJavaSE
Remove the plot from the current container, if there is one.
remove(int) - Method in class ptolemy.actor.sched.Schedule
Remove the schedule element at the specified position in the schedule list.
remove(Object) - Method in class ptolemy.actor.util.CalendarQueue
Remove the specified entry and return true if the entry is found and successfully removed, and false if it is not found.
remove(String) - Static method in class ptolemy.data.expr.Constants
Remove the constant with the given name from the table.
remove(DEEvent) - Method in class ptolemy.domains.de.kernel.DECQEventQueue
Remove an event from the event queue and return true if it was removed, and false if it was not in the queue.
remove(DEEvent) - Method in interface ptolemy.domains.de.kernel.DEEventQueue
Remove an event from the event queue and return true if it was removed, and false if it was not in the queue.
remove(Element) - Method in class ptolemy.graph.ElementList
Remove an element from this list if it exists in the list.
remove(Object) - Method in class ptolemy.graph.LabeledList
Remove an element from this list.
remove(int) - Method in class ptolemy.graph.LabeledList
Remove and return an element with a specified label from this list.
remove(int) - Method in class ptolemy.graph.sched.Schedule
Remove the schedule element at the specified position in the schedule list.
remove() - Method in class ptolemy.kernel.CompositeEntity.ContainedObjectsIterator
The remove() method is not supported because is is not supported in NamedObj.ContainedObjectsIterator.remove().
remove() - Method in class ptolemy.kernel.Entity.ContainedObjectsIterator
The remove() method is not supported because is is not supported in NamedObj.ContainedObjectsIterator.remove().
remove(Nameable) - Method in class ptolemy.kernel.util.NamedList
Remove the specified element.
remove(String) - Method in class ptolemy.kernel.util.NamedList
Remove an element specified by name.
remove() - Method in class ptolemy.kernel.util.NamedObj.ContainedObjectsIterator
Throw a UnsupportedOperationException because remove() is not supported.
remove(NamedObj) - Method in class ptolemy.kernel.util.Workspace
Remove the specified item from the directory.
remove(String) - Method in class ptolemy.moml.filter.ClassChanges
Remove a class to be filtered.
remove(String) - Method in class ptolemy.moml.filter.PortNameChanges
Remove a class to be filtered.
remove(String) - Method in class ptolemy.moml.filter.PropertyClassChanges
Remove a class to be filtered.
remove(String) - Method in class ptolemy.moml.filter.RemoveClasses
Remove a class to be filtered.
remove(String) - Method in class ptolemy.moml.filter.RemoveGraphicalClasses
Remove a class to be filtered.
remove(String) - Method in class ptolemy.moml.filter.RemoveNonPtinyClasses
Remove a class to be filtered.
remove(K, V) - Method in class ptolemy.util.MultiHashMap
Remove a specified value from the map.
removeActionListeners(JMenuBar) - Static method in class ptolemy.gui.MemoryCleaner
Remove ActionListeners from a JMenuBar.
removeActionListeners(AbstractButton) - Static method in class ptolemy.gui.MemoryCleaner
Remove ActionListeners from an AbstractButton (such as a JMenuItem.
removeActionListeners(JComponent) - Static method in class ptolemy.gui.MemoryCleaner
Remove ActionMapListeners from a JComponent.
removeActionListeners(JToolBar) - Static method in class ptolemy.gui.MemoryCleaner
Remove ActionListeners from a JToolBar.
RemoveActorAction - Class in org.kepler.gui
This action removes actors from the tree
RemoveActorAction(TreePath, Component) - Constructor for class org.kepler.gui.RemoveActorAction
Constructor
removeActorFiringListener(ActorFiringListener) - Method in class ptolemy.actor.AtomicActor
Unregister an actor firing listener.
removeActorFiringListener(ActorFiringListener) - Method in class ptolemy.actor.CompositeActor
Unregister an actor firing listener.
removeActorFiringListener(ActorFiringListener) - Method in interface ptolemy.actor.FiringsRecordable
Unregister a firing event listener.
removeActorOrientedClassProvider(ActorOrientedClassProvider) - Method in class org.ptolemy.classloading.osgi.OSGiClassLoadingStrategy
Removes the given provider from the set of registered ActorOrientedClassProviders.
removeAll(Collection) - Method in class ptolemy.graph.LabeledList
Unsupported optional method of the List interface.
removeAll() - Method in class ptolemy.kernel.util.NamedList
Remove all elements from the list.
removeAll() - Method in class ptolemy.kernel.util.Workspace
Remove all items from the directory.
removeAllChoices() - Method in class ptolemy.data.expr.Parameter
Remove all the choices.
removeAllEntities() - Method in class ptolemy.kernel.CompositeEntity
Remove all contained entities and unlink them from all relations.
removeAllFrameTabs(TableauFrame) - Method in class org.kepler.gui.TabManager
 
removeAllFrameTabs(TableauFrame) - Method in class org.kepler.objectmanager.library.LibraryManager
 
removeAllLessThan(Object) - Method in class ptolemy.actor.util.TotallyOrderedSet
Remove all the elements that are (strictly) less than the argument.
removeAllListeners() - Method in class org.kepler.objectmanager.cache.DataCacheObject
Removes all the listeners
removeAllPorts() - Method in class ptolemy.kernel.Entity
Remove all ports by setting their container to null.
removeAllRelations() - Method in class ptolemy.kernel.CompositeEntity
Remove all contained relations and unlink them from everything.
removeAnnotationObject(NamedObj) - Method in class org.kepler.sms.gui.SemanticTypeTable
Remove the given annotation object from the editor
removeAt(int) - Method in class ptolemy.actor.util.TotallyOrderedSet
Remove and return the element with the given index.
removeAttribute(String) - Method in class org.kepler.objectmanager.cache.CacheObject
remove the attribute with the given name and return it.
removeAttribute(String) - Method in interface org.kepler.objectmanager.cache.CacheObjectInterface
remove the attribute with the given name and return it.
removeAttribute(Attribute) - Method in class ptolemy.kernel.util.NamedObj
Remove attribute from list of attributes.
removeAttribute(String) - Method in class ptolemy.vergil.toolbox.GraphicElement
Remove an attribute from this element.
RemoveCaseAction() - Constructor for class ptolemy.vergil.modal.CaseGraphFrame.RemoveCaseAction
Create a case action with label "Add Case".
removeCellConstraints(String) - Method in class org.mlc.swing.layout.ContainerLayout
 
removeCellEditorListener(CellEditorListener) - Method in class org.kepler.plotting.table.ColorTableCellEditor
 
removeCellEditorListener(CellEditorListener) - Method in class org.kepler.tagging.gui.ColorTableCellEditor
 
removeChangeListener(ChangeListener) - Method in class ptolemy.actor.lib.hoc.LifeCycleManager
Override the base class to remove the listener in the container AND locally.
removeChangeListener(ChangeListener) - Method in interface ptolemy.kernel.util.Changeable
Remove a change listener, if it is present, and otherwise do nothing.
removeChangeListener(ChangeListener) - Method in class ptolemy.kernel.util.ChangeRequest
Remove the given change listener from this request.
removeChangeListener(ChangeListener) - Method in class ptolemy.kernel.util.NamedObj
Remove a change listener.
removeChoice(String) - Method in class ptolemy.data.expr.Parameter
Remove a choice.
RemoveClasses - Class in ptolemy.moml.filter
When this class is registered with the MoMLParser.addMoMLFilter() method, it will cause MoMLParser to remove or replace classes.
RemoveClasses() - Constructor for class ptolemy.moml.filter.RemoveClasses
 
removeColumn(int) - Method in class com.jgoodies.forms.layout.FormLayout
Removes the column with the given column index from the layout.
removeColumn(String) - Method in class org.kepler.util.sql.Table
Remove a column.
removeColumnGroup(int, ColumnGroup) - Method in class org.kepler.workflowrunmanager.gui.GroupableTableColumnModel
Remove a columnGroup.
removeColumnSpec(int) - Method in class org.mlc.swing.layout.ContainerLayout
 
RemoveComponentAction - Class in org.kepler.gui
This action allows an actor to be removed from the tree Created to display when actor in library tree is right clicked.
RemoveComponentAction(TreePath, Component) - Constructor for class org.kepler.gui.RemoveComponentAction
Constructor
removeComposite(NamedObj) - Method in class org.kepler.gui.frame.TabbedKeplerGraphFrame
Remove a workflow from the frame.
removeConcept(NamedOntClass) - Method in class org.kepler.sms.OntologyCatalog
 
removeConfigurationListener(ConfigurationEventListener) - Method in class org.kepler.configuration.ConfigurationManager
remove a listener
removeConnection(LayoutHint) - Method in class ptolemy.vergil.basic.layout.kieler.UndoLayoutAction
Mark the given connection routing hint for removal.
removeConstraint(String) - Method in class org.kepler.util.sql.Table
Remove a constraint.
removeContainer(String) - Method in class org.mlc.swing.layout.LayoutFrame
 
removeContainer(String) - Method in interface org.mlc.swing.layout.MultiContainerFrame
Remove the container with the specified name.
removeContainer(String) - Method in class ptolemy.actor.gui.run.RunLayoutFrame
Remove the container with the specified name.
RemoveCustomDocumentationAction - Class in ptolemy.vergil.basic
This class provides an action for removing instance-specific documentation.
RemoveCustomDocumentationAction() - Constructor for class ptolemy.vergil.basic.RemoveCustomDocumentationAction
Construct an instance of this action.
RemoveCustomKeplerDocumentationAction - Class in org.kepler.gui
This action removes KeplerDocumentationAttribute, and DocAttribute (by calling RemoveCustomDocumentationAction) from a NamedObj and then attempts to reset the KeplerDocumentationAttribute to its "original" state using the first LSID in the NamedObj's referral list.
RemoveCustomKeplerDocumentationAction(TableauFrame) - Constructor for class org.kepler.gui.RemoveCustomKeplerDocumentationAction
 
removeDate() - Method in class org.kepler.gis.actor.pylaski.PylaskiUtilities.Settings
Removes the date range filter.
removeDebugListener(DebugListener) - Method in class ptolemy.actor.sched.StaticSchedulingDirector
Override the base class to also remove the listener from the scheduler, if there is one.
removeDebugListener(DebugListener) - Method in class ptolemy.actor.util.CalendarQueue
Unregister a debug listener.
removeDebugListener(DebugListener) - Method in class ptolemy.domains.de.kernel.DECQEventQueue
Unregister a debug listener.
removeDebugListener(DebugListener) - Method in class ptolemy.domains.de.kernel.DEDirector
Unregister a debug listener.
removeDebugListener(DebugListener) - Method in interface ptolemy.kernel.util.Debuggable
Unregister a debug listener.
removeDebugListener(DebugListener) - Method in class ptolemy.kernel.util.NamedObj
Unregister a debug listener.
removeDebugListener(DebugListener) - Method in class ptolemy.kernel.util.PtolemyThread
Unregister a debug listener.
removeDebugProfile(Executable) - Method in class ptolemy.vergil.debugger.DebugController
Remove an actor from the set of actors that are being debugged.
removeDeletionListener(DeletionListener) - Method in class org.kepler.plotting.Row
 
removeDemoSeries() - Method in class org.kepler.plotting.Plot
 
removeDependency(IOPort, IOPort) - Method in class ptolemy.actor.AtomicActor
Remove the dependency that the specified output port has, by default, on the specified input port.
removeDependency(IOPort, IOPort) - Method in class ptolemy.actor.util.BreakCausalityInterface
Remove the dependency that the specified output port has on the specified input port.
removeDependency(IOPort, IOPort) - Method in interface ptolemy.actor.util.CausalityInterface
Remove the dependency that the specified output port has on the specified input port, meaning that the dependency is set to oPlusIdentity.
removeDependency(IOPort, IOPort) - Method in class ptolemy.actor.util.CausalityInterfaceForComposites
Remove the dependency that the specified output port has on the specified input port.
removeDependency(IOPort, IOPort) - Method in class ptolemy.actor.util.DefaultCausalityInterface
Remove the dependency that the specified output port has on the specified input port.
removeDir(File) - Method in class org.kepler.objectmanager.cache.LocalRepositoryManager.LocalRepository
Remove a root directory.
removeEdge(Edge) - Method in class ptolemy.graph.Graph
Remove an edge from this graph if it exists in the graph.
removeEdge(Object) - Method in class ptolemy.vergil.modal.FSMGraphModel.ArcModel
Remove the given edge and delete its associated relation.
removeEditListener(EditListener) - Method in class ptolemy.plot.EditablePlot
Unregister a edit listener.
removeEditor() - Method in class org.kepler.workflowrunmanager.gui.GroupableTableHeader
 
removeEditorForRow(int) - Method in class org.kepler.reporting.gui.RowEditorModel
 
removeElement(String) - Method in class org.kepler.modulemanager.gui.SuitesList
 
removeEnabledListener(ProvenanceEnabledListener) - Method in class org.kepler.provenance.ProvenanceRecorder
Remove a ProvenanceEnabledListener from the set of listeners.
removeExecutionChoice(String) - Method in class org.kepler.ddp.actor.ExecutionChoice
Remove an execution choice.
removeExecutionListener(ExecutionListener) - Method in class org.kepler.ExecutionEngine
remove an execution listener
removeExecutionListener(ExecutionAspectListener) - Method in interface ptolemy.actor.ActorExecutionAspect
Remove schedule listener.
removeExecutionListener(ExecutionListener) - Method in class ptolemy.actor.Manager
Remove a listener from the list of listeners that are notified of execution events.
removeFieldChangeListener(DBSelectTableFieldChangedListener) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIBase
Sets a single listener for this object, remove it by setting it to null
removeFileExtension(String) - Static method in class org.kepler.configuration.ConfigurationManager
utility method to remove the file extension from the filename
removeFirst() - Method in class ptolemy.actor.util.TotallyOrderedSet
Remove and return the first element, ie. the smallest element in the set.
removeForeignKey(String) - Method in class org.kepler.util.sql.Table
Remove a foreign key.
removeFrameTab(TableauFrame, String) - Method in class org.kepler.gui.TabManager
 
removeFromCache(NamedOntClass) - Method in class org.kepler.tagging.TagCache
 
removeGraphicalClasses - Variable in class ptolemy.actor.gui.Configuration
A Parameter that if set to true adds RemoveGraphicalClasses to the list of MoMLFilters.
RemoveGraphicalClasses - Class in ptolemy.moml.filter
When this class is registered with the MoMLParser.setMoMLFilter() method, it will cause MoMLParser to filter out graphical classes.
RemoveGraphicalClasses() - Constructor for class ptolemy.moml.filter.RemoveGraphicalClasses
Construct a filter that removes graphical classes.
RemoveGraphicalClassesApplication - Class in ptolemy.moml.filter
An application that removes graphical classes.
RemoveGraphicalClassesApplication() - Constructor for class ptolemy.moml.filter.RemoveGraphicalClassesApplication
 
removeHierarchyListener(HierarchyListener) - Method in class ptolemy.kernel.util.NamedObj
Remove a hierarchy listener.
RemoveIconAction - Class in ptolemy.vergil.toolbox
Action to remove a custom icon.
RemoveIconAction() - Constructor for class ptolemy.vergil.toolbox.RemoveIconAction
 
removeInitializable(Initializable) - Method in class org.kepler.monitor.MonitorManager
Does nothing.
removeInitializable(Initializable) - Method in class org.kepler.provenance.ProvenanceRecorder
Remove the specified object from the list of objects whose preinitialize(), intialize(), and wrapup() methods should be invoked upon invocation of the corresponding methods of this object.
removeInitializable(Initializable) - Method in class org.kepler.reporting.ReportingListener
 
removeInitializable(Initializable) - Method in class org.kepler.webview.actor.WebViewAttribute
 
removeInitializable(Initializable) - Method in class ptolemy.actor.AbstractInitializableAttribute
Remove the specified object from the list of objects whose preinitialize(), initialize(), and wrapup() methods should be invoked upon invocation of the corresponding methods of this object.
removeInitializable(Initializable) - Method in class ptolemy.actor.AtomicActor
Remove the specified object from the list of objects whose preinitialize(), initialize(), and wrapup() methods should be invoked upon invocation of the corresponding methods of this object.
removeInitializable(Initializable) - Method in class ptolemy.actor.CompositeActor
Remove the specified object from the list of objects whose preinitialize(), initialize(), and wrapup() methods should be invoked upon invocation of the corresponding methods of this object.
removeInitializable(Initializable) - Method in class ptolemy.actor.Director
Remove the specified object from the list of objects whose preinitialize(), initialize(), and wrapup() methods should be invoked upon invocation of the corresponding methods of this object.
removeInitializable(Initializable) - Method in interface ptolemy.actor.Initializable
Remove the specified object from the set of objects whose preinitialize(), initialize(), and wrapup() methods should be invoked upon invocation of the corresponding methods of this object.
removeInitializable(Initializable) - Method in class ptolemy.actor.lib.ExceptionManager
Remove the specified object from the list of objects whose preinitialize(), initialize(), and wrapup() methods should be invoked upon invocation of the corresponding methods of this object.
removeInitializable(Initializable) - Method in class ptolemy.actor.parameters.ParameterSet
Remove the specified object from the list of objects whose preinitialize(), initialize(), and wrapup() methods should be invoked upon invocation of the corresponding methods of this object.
removeInitializable(Initializable) - Method in class ptolemy.actor.parameters.SharedParameter
Remove the specified object from the list of objects whose preinitialize(), initialize(), and wrapup() methods should be invoked upon invocation of the corresponding methods of this object.
removeInitializable(Initializable) - Method in class ptolemy.actor.PubSubPort
Do nothing.
removeInitializable(Initializable) - Method in class ptolemy.data.expr.AbstractInitializableParameter
Remove the specified object from the list of objects whose preinitialize(), initialize(), and wrapup() methods should be invoked upon invocation of the corresponding methods of this object.
removeInitializable(Initializable) - Method in class ptolemy.domains.modal.kernel.FSMActor
Remove the specified object from the list of objects whose preinitialize(), initialize(), and wrapup() methods should be invoked upon invocation of the corresponding methods of this object.
removeInput(String) - Method in class org.kepler.ddp.actor.ExecutionChoice
Remove a file input.
removeIOPortEventListener(IOPortEventListener) - Method in class ptolemy.actor.IOPort
Unregister a token sent listener.
RemoveIOPortEventListener - Class in ptolemy.actor.test
 
RemoveIOPortEventListener() - Constructor for class ptolemy.actor.test.RemoveIOPortEventListener
 
removeItem(DataCacheObject) - Static method in class org.kepler.objectmanager.cache.DataCacheManager
 
removeItem(int) - Method in class org.kepler.objectmanager.library.LibIndex
Remove all data from the index database that is associated with the given Library Index ID and all of the data of it's children.
removeItem(LibItem) - Method in class org.kepler.objectmanager.library.LibIndex
Remove all data from the index database that is associated with the given Library Item (using the Library Index ID) and all of the data of it's children.
removeItemsByLsid(KeplerLSID) - Method in class org.kepler.objectmanager.library.LibIndex
This method will remove the given LSID from being associated with any of the Library Items.
removeJmgrFromTable(String, String) - Static method in class org.kepler.job.JobManagerFactory
 
removeKARFromCache(File) - Method in class org.kepler.kar.KARCacheManager
Remove a KAR file from the cache.
removeLabel(ItemLabel) - Method in class org.kepler.reporting.rio.Item
 
removeLabel(NamedOntClass) - Method in class org.kepler.tagging.gui.ExistingTagsPanel
 
removeLayout(ContainerLayout) - Method in class org.mlc.swing.layout.LayoutConstraintsManager
 
removeLayoutComponent(Component) - Method in class com.jgoodies.forms.layout.FormLayout
Removes the specified component from this layout.
removeLayoutComponent(Component) - Method in class org.mlc.swing.layout.ContainerLayout
 
removeLayoutHintItem(LayoutHint.LayoutHintItem) - Method in class ptolemy.vergil.actor.LayoutHint
Remove a LayoutHint.LayoutHintItem from this storage.
removeLegend(int) - Method in class ptolemy.plot.PlotBox
Remove the legend (displayed at the upper right) for the specified data set.
removeLegend(int) - Method in interface ptolemy.plot.PlotBoxInterface
Remove the legend (displayed at the upper right) for the specified data set.
removeLink(String, String) - Method in class org.kepler.provenance.Recording
Remove a link between two endpoints.
removeLink(String, String) - Method in class org.kepler.provenance.TextFileRecording
 
removeLinkedPort(Port) - Method in class ptolemy.moml.Vertex
Remove the specified port from the list of ports linked to this vertex.
removeListener(ModuleManagerEventListener) - Method in class org.kepler.modulemanager.ModuleDownloader
remove the given listener
removeListener(DataCacheListener) - Method in class org.kepler.objectmanager.cache.DataCacheObject
Removes a listener
removeListener(SMSTagChangeListener) - Static method in class org.kepler.sms.SMSServices
 
removeListener(SshEventListener) - Method in class org.kepler.ssh.SshEventRegistry
Unregister an event listener.
removeListener(WeakReference<TagBarDisplayUI>) - Static method in class org.kepler.tagging.gui.TagManagerUI
 
removeListener(ScheduleChangeListenerInterface) - Method in class org.kepler.workflowscheduler.gui.ScheduleChangeController
Remove a listener from the controller
removeListeners() - Method in class ptolemy.vergil.basic.AbstractBasicGraphModel
Remove any listeners we have created.
removeLiveSoundListener(LiveSoundListener) - Static method in class ptolemy.media.javasound.LiveSound
Remove a live sound listener.
removeLiveSoundListener(LiveSoundListener) - Method in class ptolemy.media.javasound.LiveSoundCommon
Remove a live sound listener.
removeLiveSoundListener(LiveSoundListener) - Method in interface ptolemy.media.javasound.LiveSoundInterface
Remove a live sound listener.
removeLocaleDesignator(String) - Static method in class org.kepler.configuration.ConfigurationManager
remove the locale designator from a filename. this works with or without a file extension (i.e. .xml).
removeLocalRepoRootDir(File) - Method in class org.kepler.objectmanager.cache.LocalRepositoryManager
This method only removes the given directory from the in-memory repository list.
removeLsid(KeplerLSID) - Method in class org.kepler.objectmanager.library.LibItem
 
removeLsidDependency(KeplerLSID) - Method in class org.kepler.kar.KAREntry
 
removeMapping(SimpleMergeMapping) - Method in class org.kepler.sms.actors.MergeEditorDialog
 
removeMenu(JMenu) - Method in class org.kepler.gui.frame.TabbedKeplerGraphFrame
Remove a menu from the menu bar.
removeMenuItemFactory(MenuItemFactory) - Method in class ptolemy.vergil.toolbox.PtolemyMenuFactory
Remove the given menu item factory from the factory list.
removeMenuItemFactory(MenuItemFactory) - Method in class ptolemy.vergil.tree.PTreeMenuCreator
Remove the given menu item factory from the factory list.
removeMetadataHandler(MetadataHandler) - Method in class org.kepler.objectmanager.ActorMetadata
remove a metadata handler
removeModel(NamedObj) - Method in class org.kepler.gui.ModelToFrameManager
Remove a model from the mapping.
removeModel(NamedObj) - Static method in class org.kepler.webview.server.WebViewServer
 
removeModelElementClassProvider(ModelElementClassProvider) - Method in class org.ptolemy.classloading.osgi.OSGiClassLoadingStrategy
Remove the given provider from the set of registered ModelElementClassProviders.
removeModelPorts(CompositeActor) - Static method in class org.kepler.ddp.Utilities
Remove top-level ports and relations from a composite actor.
removeMyPorts() - Method in class org.camera.service.CAMERARESTService
Removes port that were in the old list but not used currently
removeNamedObj(NamedObj) - Method in class org.kepler.objectmanager.ObjectManager
Attempt to remove NamedObj from ObjectManager: if getIdFor(namedObj) returns an LSID for an object in the ObjectManager, it will be removed.
removeNamedObjs(NamedObj) - Method in class org.kepler.objectmanager.ObjectManager
Attempt to remove NamedObj from ObjectManager: if getIdFor(namedObj) returns an LSID for an object in the ObjectManager, it will be removed.
RemoveNilTokens - Class in ptolemy.actor.lib
Read in tokens and silently discard any tokens that are marked as nil.
RemoveNilTokens(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.RemoveNilTokens
Construct an actor with the given container and name.
removeNode(Node) - Method in class ptolemy.graph.Graph
Remove a node from this graph if it exists in the graph.
removeNode(Object, Object) - Method in class ptolemy.vergil.actor.ActorGraphModel.ExternalPortModel
Remove the given edge from the model.
removeNode(Object, Object) - Method in class ptolemy.vergil.actor.ActorGraphModel.IconModel
Remove the given node from the model.
removeNode(Object, Object) - Method in class ptolemy.vergil.actor.ActorGraphModel.PortModel
Remove the given node from the model.
removeNode(Object, Object) - Method in class ptolemy.vergil.actor.ActorGraphModel
Delete a node from its parent graph and notify graph listeners with a NODE_REMOVED event.
removeNode(Object, Object) - Method in class ptolemy.vergil.actor.ActorGraphModel.VertexModel
Remove the given node from the model.
removeNode(Object, Object) - Method in class ptolemy.vergil.basic.AbstractBasicGraphModel
Delete a node from its parent graph and notify graph listeners with a NODE_REMOVED event.
removeNode(Object, Object) - Method in class ptolemy.vergil.basic.NamedObjNodeModel
Remove the specified node from the model.
removeNode(Object, Object) - Method in class ptolemy.vergil.kernel.AttributeNodeModel
Remove the given node from the model.
removeNode(Object, Object) - Method in class ptolemy.vergil.modal.FSMGraphModel.PortModel
Remove the given node from the model.
removeNode(Object, Object) - Method in class ptolemy.vergil.modal.FSMGraphModel
Delete a node from its parent graph and notify graph listeners with a NODE_REMOVED event.
removeNode(Object, Object) - Method in class ptolemy.vergil.modal.FSMGraphModel.StateModel
Remove the given node from the model.
RemoveNonPtinyClasses - Class in ptolemy.moml.filter
Remove classes such as code generators that are not present in Ptiny.
RemoveNonPtinyClasses() - Constructor for class ptolemy.moml.filter.RemoveNonPtinyClasses
 
removeNotify() - Method in class org.kepler.profiling.gui.ExecutionMonitorPanel
Clean up resources since panel is being closed.
removeNotify() - Method in class org.kepler.profiling.gui.PreviousExecutionPanel
Clean up resources since panel is being closed.
removeNotify() - Method in class org.kepler.profiling.gui.ViewWatchingTabPane
Clean up resources since panel is being closed.
removeNotify() - Method in class org.kepler.profiling.gui.WorkflowRunOutlineTabPane
Clean up resources since panel is being closed.
removeNullContainer() - Method in interface ptolemy.actor.lib.gui.PlotterBaseInterface
Remove the plot from the frame if the container is null.
removeNullContainer() - Method in class ptolemy.actor.lib.gui.PlotterBaseJavaSE
Remove the plot from the frame if the container is null.
RemoveNulls - Class in org.kepler.spark.mllib
Removes null values from a JavaRDD dataset and creates a new dataset.
RemoveNulls(CompositeEntity, String) - Constructor for class org.kepler.spark.mllib.RemoveNulls
 
removeObject(KeplerLSID) - Method in class org.kepler.objectmanager.cache.CacheManager
remove the CacheObjectInterface with the specified lsid.
removeObject(KeplerLSID) - Method in class org.kepler.objectmanager.ObjectManager
Attempts to remove object from ObjectManager: if getObjectRevision(lsid) returns a NamedObj, calls removeNamedObj on this NamedObj.
removeObject(NamedOntClass) - Method in class org.kepler.sms.gui.NamedOntClassTransferable
Remove the given object from this transferable.
removeObject(Object) - Method in class org.kepler.sms.SemanticTypeManager
Remove an object from this manager
removeObject(NamedObj) - Method in class ptolemy.vergil.toolbox.PtolemyTransferable
Remove the given object from this transferable.
removeObjectForLSID(KeplerLSID) - Method in class org.kepler.objectmanager.ObjectManager
 
removeObjectsForLSIDWithoutRevision(String) - Method in class org.kepler.objectmanager.ObjectManager
Remove all NamedObjects from ObjectManager that match this lsid without revision.
removeObservable(String) - Method in class org.kepler.gis.actor.pylaski.PylaskiUtilities.Settings
Removes a previously added observable.
removeOpenFrame(TableauFrame) - Method in class org.kepler.gui.ViewManager
Method for remove .
removeOutput(String) - Method in class org.kepler.ddp.actor.ExecutionChoice
Remove a file output.
removeOutputPort(IOPort) - Method in class org.kepler.sms.actors.MergeActor
removes the given output port
removeParameter(String) - Method in class org.kepler.ddp.actor.ExecutionChoice
Remove a parameter.
removePendingUser(String) - Method in class org.geon.LidarJobDB
Remove a pending user from the pending access list once approved.
removePiggyback(Recording) - Method in class org.kepler.provenance.ProvenanceRecorder
Remove the specified recording from the list of recordings notified for each provenance event.
removePiggyback(Executable) - Method in class ptolemy.actor.CompositeActor
Remove the specified object from the list of objects whose action methods should be invoked upon invocation of the corresponding actions methods of this object.
removePiggybackForFuture(Recording) - Static method in class org.kepler.provenance.ProvenanceRecorder
Remove the specified recording from the list of recordings that receive provenance events from all ProvenanceRecorders created in the future.
removePlot(PlotEditor) - Method in class org.kepler.gui.PlotsEditorPanel
 
removePort(String) - Method in class ptolemy.vergil.basic.KeplerDocumentationAttribute
Remove a port from the port hashtable.
removePortForwardL(int, boolean) - Method in class org.kepler.ssh.SshExec
Remove a local port forwarding.
removePortForwardR(int, boolean) - Method in class org.kepler.ssh.SshExec
Remove a remote port forwarding.
removePorts() - Method in class org.camera.service.CAMERARESTService
This method removes all input ports
removeProcessListener(PNProcessListener) - Method in class ptolemy.domains.pn.kernel.PNDirector
Remove a process listener from this director.
RemoveProperties - Class in ptolemy.moml.filter
When this class is registered with the MoMLParser.setMoMLFilter() method, it will cause MoMLParser to filter out the properties included in this classes.
RemoveProperties() - Constructor for class ptolemy.moml.filter.RemoveProperties
 
removeProperty(ConfigurationProperty) - Method in class org.kepler.configuration.ConfigurationProperty
remove the given property
removeProperty(String) - Method in class ptolemy.vergil.basic.KeplerDocumentationAttribute
Remove a property from the property hashtable.
removePropertyChangeListener(PropertyChangeListener) - Method in class com.jgoodies.forms.util.DefaultUnitConverter
Removes a PropertyChangeListener from the listener list.
removePropertyChangeListener(String, PropertyChangeListener) - Method in class com.jgoodies.forms.util.DefaultUnitConverter
Removes a PropertyChangeListener from the listener list for a specific property.
removePropertyChangeListener(PropertyChangeListener) - Method in class org.kepler.monitor.MonitoredStatus
Removes a property change listener from this monitored status.
removeProxy(ProxyEntity) - Method in class org.kepler.authentication.ProxyRepository
 
removeQueryListener(QueryListener) - Method in class ptolemy.gui.Query
Remove a listener.
removeRecordingType(String) - Method in class org.kepler.provenance.ProvenanceRecorder
Remove a recording type.
removeReferral(KeplerLSID) - Method in class org.kepler.moml.NamedObjIdReferralList
Remove an LSID from the referral list.
RemoveRefinementAction(String, String) - Constructor for class org.kepler.gui.frame.MultiCompositeTableau.RemoveRefinementAction
Create a tabbed composite action with a label.
RemoveRefinementAction() - Constructor for class ptolemy.vergil.modal.modal.HierarchicalStateController.RemoveRefinementAction
 
removeRegistryEntry(KeplerLSID, String) - Method in class org.kepler.objectmanager.repository.EcogridRepository
remove an ecogrid registry entry.
removeRenameListener(WorkflowRenameListener) - Method in class org.kepler.util.WorkflowRenameManager
Remove a WorkflowRenameListener from the list of listeners.
removeRow(int) - Method in class com.jgoodies.forms.layout.FormLayout
Removes the row with the given row index from the layout.
removeRow(Row) - Method in class org.kepler.plotting.DataTable
 
removeRow(int) - Method in class ptolemy.actor.gui.ArrayOfRecordsPane.ArrayAsTable
Remove the specified row from the table.
removeRowSpec(int) - Method in class org.mlc.swing.layout.ContainerLayout
 
RemoveRowsWithNulls - Class in org.kepler.spark.mllib
 
RemoveRowsWithNulls(CompositeEntity, String) - Constructor for class org.kepler.spark.mllib.RemoveRowsWithNulls
 
removeSchedule(Schedule) - Method in class org.kepler.workflowscheduler.gui.ExistingSchedulePanel
Handle the event that a schedule is removed.
removeSchedule(Schedule) - Method in class org.kepler.workflowscheduler.gui.ScheduleChangeController
Handle the event that a schedule is removed
removeSchedule(Schedule) - Method in interface org.kepler.workflowscheduler.gui.ScheduleChangeListenerInterface
Handle the event that a schedule is removed
removeSchedule(Schedule) - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerDialog
Handle the event that a schedule is removed
removeSchedule(Schedule) - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerParentPanel
Method for ScheduleChangeListener.
RemoveScheduleAction - Class in org.kepler.workflowscheduler.gui
Represents an action to remove a schedule from a scheduler server.
RemoveScheduleAction(TableauFrame, WorkflowSchedulerParentPanel, ScheduleChangeController) - Constructor for class org.kepler.workflowscheduler.gui.RemoveScheduleAction
Constructor
removeSearchType(int) - Method in class org.kepler.objectmanager.library.LibSearchConfiguration
 
removeSelectedLink() - Method in class org.ecoinformatics.seek.querybuilder.DBTableJoin
Removes a link or "join" between two tables
removeSelectionListener(OntologyDisplaySelectionListener) - Method in class org.kepler.tagging.gui.OntologyDisplayUI
 
removeSemanticType(String) - Method in class org.kepler.moml.KeplerActorMetadata
 
removeSemanticType(String) - Method in class org.kepler.objectmanager.ActorMetadata
 
removeService(EcoGridService) - Method in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
Remove a given service from current query service list.
removeStateChangeListener(String, StateChangeListener) - Method in class org.kepler.gui.state.StateChangeMonitor
This method is called by objects to remove a listener for changes in the application state.
removeStateSerializer() - Method in class org.kepler.provenance.ProvenanceRecorder
Remove the state serializer.
removeStateSerializer() - Method in class org.kepler.provenance.Recording
Remove the state serializer.
removeTable(int, String) - Method in class org.ecoinformatics.seek.querybuilder.DBTableJoin
Removes a tables to and from joins.
removeTable(String) - Method in class org.kepler.util.sql.Schema
Remove a table.
removeTabPaneListener(TabPaneActionListener) - Method in class org.kepler.gui.TabManager
 
removeTag(NamedOntClass, boolean) - Method in class org.kepler.tagging.gui.ExistingTagsPanel
 
removeTag(NamedObj, NamedOntClass, List<TagEventListener>, boolean) - Static method in class org.kepler.tagging.Tagging
 
removeTag(NamedObj, NamedOntClass, boolean) - Static method in class org.kepler.tagging.Tagging
Remove a tag from the named object object
removeTagEventListener(TagEventListener) - Method in class org.kepler.tagging.gui.TagBarUI
 
removeTargetPort(IOPort) - Method in class org.kepler.sms.actors.MergeEditorDialog
removes the given target port
removeTest() - Static method in class org.kepler.configuration.ConfigurationTest
 
removeThread(Thread) - Method in class ptolemy.actor.process.ProcessDirector
Notify this director that the specified thread has finished executing.
removeTmpHDFSDir - Variable in class org.kepler.hadoop.director.HadoopEngine
If true, the temporary dir created on HDFS during its execution will be removed after workflow execution.
removeTopLevelLabel() - Method in class org.kepler.sms.NamedOntModel
 
removeTreeModelListener(TreeModelListener) - Method in class org.kepler.gui.FilteredVisibleTreeModel
 
removeTreeModelListener(TreeModelListener) - Method in class org.sdm.spa.gui.XMLUIP.DomToTreeModelAdapter
 
removeTreeModelListener(TreeModelListener) - Method in class ptolemy.vergil.tree.EntityTreeModel
Remove the specified listener.
removeType(Object, String) - Method in class org.kepler.sms.SemanticTypeManager
Remove a concept id from the given object.
removeTypeListener(TypeListener) - Method in class ptolemy.actor.TypedIOPort
Remove a type listener from this port.
removeTypes(Object) - Method in class org.kepler.sms.SemanticTypeManager
 
removeUpdate(DocumentEvent) - Method in class org.kepler.reporting.gui.DynamicReportItemPanel.DynamicReportItemLabelDocumentListener
 
removeUpdate(DocumentEvent) - Method in class org.kepler.reporting.gui.ReportDesignerPanel.SectionHeaderDocumentListener
 
removeUpdate(DocumentEvent) - Method in class org.kepler.reporting.gui.ReportDesignerPanel.TextAreaDocumentListener
 
removeUpdate(DocumentEvent) - Method in class org.kepler.reporting.gui.ReportDesignerPanel.TitleDocumentListener
 
removeUpdate(DocumentEvent) - Method in class ptolemy.actor.gui.TextEditor
React to notification that there was a removal from the document.
removeUpdater(KeplerGraphFrameUpdater) - Static method in class org.kepler.gui.KeplerGraphFrame
Remove an KeplerGraphFrameUpdater from the set of updaters.
removeValue(ItemValue) - Method in class org.kepler.reporting.rio.Item
 
removeValueListener(ValueListener) - Method in class org.kepler.moml.DependencyAttribute
remove the indicated listener
removeValueListener(ValueListener) - Method in class org.kepler.moml.NamedObjId
remove the indicated listener
removeValueListener(ValueListener) - Method in class org.kepler.moml.PortAttribute
remove the indicated listener
removeValueListener(ValueListener) - Method in class ptolemy.actor.LocalClock
This method has to be implemented for the AbstractSettableAttribute interface.
removeValueListener(ValueListener) - Method in class ptolemy.data.expr.Variable
Remove a listener from the list of listeners that is notified when the value of this variable changes.
removeValueListener(ValueListener) - Method in class ptolemy.domains.modal.kernel.FSMTransitionParameter
Remove value listener.
removeValueListener(ValueListener) - Method in class ptolemy.kernel.util.ConfigurableAttribute
Remove a listener from the list of listeners that is notified when the value of this attribute changes.
removeValueListener(ValueListener) - Method in class ptolemy.kernel.util.Location
Remove a listener from the list of listeners that is notified when the value of this variable changes.
removeValueListener(ValueListener) - Method in interface ptolemy.kernel.util.Settable
Remove a listener from the list of listeners that are notified when the value of this variable changes.
removeValueListener(ValueListener) - Method in class ptolemy.kernel.util.StringAttribute
Remove a listener from the list of listeners that is notified when the value of this attribute changes.
removeValueListener(ValueListener) - Method in class ptolemy.moml.unit.UnitAttribute
Remove a listener from the list of listeners that is notified when the value of this attribute changes.
removeValueListener(ValueListener) - Method in class ptolemy.vergil.actor.LayoutHint
Remove a listener from the list of listeners that is notified when the value of this variable changes.
removeValueListener(ValueListener) - Method in class ptolemy.vergil.actor.lib.MonitorReceiverAttribute
Remove a listener from the list of listeners that are notified when the value of this variable changes.
removeValueListener(ValueListener) - Method in class ptolemy.vergil.kernel.attributes.AttributeValueAttribute
Remove a listener from the list of listeners that are notified when the value of this variable changes.
removeWeight() - Method in class ptolemy.graph.Element
Make the element unweighted.
removeWindowListeners(Window) - Static method in class ptolemy.gui.MemoryCleaner
Remove WindowListeners from a Window.
removeWorkflow(NamedObj) - Static method in class org.kepler.webview.server.WebViewId
Remove all the ids inside of the a workflow.
removeWorkflow(KeplerLSID) - Method in class org.kepler.workflow.WorkflowManager
 
removeWorkflowRunEngineFromConfig(WorkflowRunEngine) - Static method in class org.kepler.module.workflowschedulergui.Initialize
Remove the specified engine from configuration file.
removeWorkflowRunManagerEventListener(WorkflowRunManagerEventListener) - Method in class org.kepler.workflowrunmanager.WorkflowRunManager
 
rename(String, String) - Method in class org.kepler.provenance.Recording
A NamedObj was renamed.
rename(String, String) - Method in class org.kepler.provenance.TextFileRecording
A NamedObj was renamed.
renameColumn(String, Column, String) - Method in class org.kepler.util.sql.DatabaseType
Rename a column.
renameColumn(String, Column, String) - Method in class org.kepler.util.sql.HSQL
Rename a column.
renameColumn(String, Column, String) - Method in class org.kepler.util.sql.MySQL
Rename a column.
renameColumn(String, Column, String) - Method in class org.kepler.util.sql.Oracle
Rename a column.
renameColumn(String, Column, String) - Method in class org.kepler.util.sql.PostgreSQL
Rename a column.
renameComponentEntity(ComponentEntity, String) - Static method in class org.kepler.util.RenameUtil
A method for renaming ComponentEntities.
RenameComponentEntityAction - Class in org.kepler.gui
 
RenameComponentEntityAction(TableauFrame) - Constructor for class org.kepler.gui.RenameComponentEntityAction
 
RenameConfigurer - Class in ptolemy.actor.gui
This class is an editor widget to rename an object.
RenameConfigurer(NamedObj) - Constructor for class ptolemy.actor.gui.RenameConfigurer
Construct a rename configurer for the specified entity.
RenameDialog - Class in ptolemy.actor.gui
This class is a modal dialog box for renaming an object.
RenameDialog(Frame, NamedObj) - Constructor for class ptolemy.actor.gui.RenameDialog
Construct a dialog with the specified owner and target.
RenameDialogAction - Class in ptolemy.vergil.kernel
An action that creates a dialog to rename an object.
RenameDialogAction(TableauFrame) - Constructor for class ptolemy.vergil.kernel.RenameDialogAction
Construct a rename dialog action with the specified parent, which will appear in the menu that uses this action.
RenameDialogAction(String) - Constructor for class ptolemy.vergil.kernel.RenameDialogAction
Construct a rename dialog action with the specified name, which will appear in the menu that uses this action.
RenameDialogFactory - Class in ptolemy.vergil.kernel
Deprecated.
Use RenameDialogAction instead.
RenameDialogFactory() - Constructor for class ptolemy.vergil.kernel.RenameDialogFactory
Deprecated.
 
renamedWorkflow(NamedObj, KeplerLSID, KeplerLSID, String, String) - Method in class org.kepler.provenance.ProvenanceRecorder
A workflow was renamed.
renamedWorkflow(NamedObj, KeplerLSID, KeplerLSID, String, String) - Method in class org.kepler.provenance.Recording
A workflow was renamed.
renamedWorkflow(NamedObj, KeplerLSID, KeplerLSID, String, String) - Method in class org.kepler.provenance.sql.SQLRecordingV8
A workflow was renamed.
renamedWorkflow(NamedObj, KeplerLSID, KeplerLSID, String, String) - Method in interface org.kepler.util.WorkflowRenameListener
A workflow was renamed.
renamedWorkflow(NamedObj, KeplerLSID, KeplerLSID, String, String) - Method in class org.kepler.util.WorkflowRenameManager
Notify all WorkflowRenameListeners that a workflow was renamed.
renamedWorkflow(NamedObj, KeplerLSID, KeplerLSID, String, String) - Method in class org.kepler.workflowrunmanager.WorkflowRunManagerRecording
A workflow was renamed.
renameExecutionChoice(String, String) - Method in class org.kepler.ddp.actor.ExecutionChoice
Rename an execution choice.
renameInput(String, String) - Method in class org.kepler.ddp.actor.ExecutionChoice
Rename an input.
renameLegend(int, String) - Method in class ptolemy.plot.PlotBox
Rename a legend.
renameLegend(int, String) - Method in interface ptolemy.plot.PlotBoxInterface
Rename a legend.
RenameListener - Class in org.kepler.util
 
RenameListener() - Constructor for class org.kepler.util.RenameListener
 
renameOutput(String, String) - Method in class org.kepler.ddp.actor.ExecutionChoice
Rename an output.
renameParameter(String, String) - Method in class org.kepler.ddp.actor.ExecutionChoice
Rename a parameter.
renameParameter(String, String, NamedObj) - Method in class org.kepler.ddp.actor.ExecutionChoice
Rename a parameter in the specified container.
renameTransitionLabels(Map) - Method in class ptolemy.domains.modal.kernel.ia.InterfaceAutomaton
Rename the labels on some transitions.
RenameUtil - Class in org.kepler.util
A utility class for renaming things.
RenameUtil() - Constructor for class org.kepler.util.RenameUtil
 
renameVariables(ASTPtRootNode, Variable, Variable, String) - Method in class ptolemy.data.expr.ParseTreeFreeVariableRenamer
Rename the variables, if any, in the dependentVariable that refer to the specified variableToRename.
render(Object) - Method in class ptolemy.vergil.actor.ExternalIOPortController.PortRenderer
Render a port.
render(Object) - Method in class ptolemy.vergil.actor.IOPortController.EntityPortRenderer
Render a visual representation of the given node.
render(Object, Site, Site) - Method in class ptolemy.vergil.actor.LinkController.LinkRenderer
Render a visual representation of the given edge.
render(Object) - Method in class ptolemy.vergil.basic.IconController.IconRenderer
Render a visual representation of the given node.
render(Object) - Method in class ptolemy.vergil.kernel.RelationController.RelationRenderer
Render a visual representation of the given node.
render(Object) - Method in class ptolemy.vergil.modal.StateController.StateRenderer
Render an object.
render(Object, Site, Site) - Method in class ptolemy.vergil.modal.TransitionController.LinkRenderer
Render a visual representation of the given edge.
renderDecoratorHighlight(NamedObj, Figure) - Static method in class ptolemy.vergil.kernel.AttributeController
Render the value of the _highlightColor parameter.
renderDeselected(Figure) - Method in class ptolemy.vergil.kernel.AnimationRenderer
Set the rendering of the figure to not be highlighted.
renderDynamicReportItem(Item) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
renders a Dynamic Report Item.
renderer - Variable in class org.kepler.workflowrunmanager.gui.ColumnGroup
Cell renderer for group header.
renderHighlight(NamedObj, Figure) - Static method in class ptolemy.vergil.kernel.AttributeController
Render the value of the _highlightColor parameter.
renderHRPanel(DragAndDropPanel, JLabel, JRadioButton) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
Renders the view for the StaticReportItemHR (Horizontal Rule)
renderImagePanel(Item, DragAndDropPanel, JLabel, JRadioButton) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
Renders the view for the StaticReportItemImage (static image)
renderReportAsAWT(ReportInstance, File) - Method in class org.kepler.reporting.rio.fop.ReportRenderer
Deprecated. 
renderReportInstanceFromCurrentLayout(Integer) - Method in class org.kepler.reporting.gui.ReportViewerPanel
 
renderReportTab() - Method in class org.kepler.reporting.gui.ReportViewerPanel
 
renderSectionPanel(DragAndDropPanel, JLabel, JRadioButton, String) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
Renders the view for the StaticReportItemSection (Section)
renderSelected(Figure) - Method in class ptolemy.vergil.kernel.AnimationRenderer
Set the rendering of the figure as highlighted.
renderStaticReportItem(Item) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
renderStaticReportItem() - Renders the Static Report Items
renderTab() - Method in class org.kepler.reporting.gui.ReportViewerTOC
 
renderTextPanel(DragAndDropPanel, JLabel, JRadioButton, String) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
renderTextPanel() - Renders the view for the StaticReportItemText
renderView(DragAndDropPanel, JRadioButton, List<LabelPanel>, DeleteItemButton, String) - Method in class org.kepler.reporting.gui.DynamicReportItemPanel
 
reorderPNGReaders() - Static method in class org.kepler.reporting.rio.fop.ReportRenderer
 
repaint(long, int, int, int, int) - Method in class org.ecoinformatics.seek.querybuilder.DBTableDesktopPane
Overrides paint so it can "dirty" everything
repaint() - Method in interface ptolemy.plot.PlotBoxInterface
Repaint the object.
repaint() - Method in class ptolemy.vergil.basic.BasicGraphPane
Override the base class to set the background.
repaint(DamageRegion) - Method in class ptolemy.vergil.basic.BasicGraphPane
Override the base class to set the background.
repaint() - Method in class ptolemy.vergil.kernel.ShadowHighlighter
Request a repaint of the figure and shadow.
repaint(DamageRegion) - Method in class ptolemy.vergil.unit.BasicEdgeHighlighter
Receive repaint notification.
repaint() - Method in class ptolemy.vergil.unit.BasicEdgeHighlighter
Request a repaint of the figure and highlight.
Repeat - Class in org.sdm.spa
Deprecated.
use ptolemy.domains.sdf.lib.Repeat instead.
Repeat(CompositeEntity, String) - Constructor for class org.sdm.spa.Repeat
Deprecated.
 
repeat - Variable in class ptolemy.actor.lib.Pulse
The flag that indicates whether the pulse sequence needs to be repeated.
repeat - Variable in class ptolemy.actor.lib.Sequence
The flag that indicates whether the sequence needs to be repeated.
repeat - Variable in class ptolemy.actor.lib.URLDirectoryReader
Deprecated.
Repeat after outputting all elements of the directory.
repeat(IntToken, Token) - Static method in class ptolemy.data.expr.UtilityFunctions
Create an array that contains the specified element repeated the specified number of times.
Repeat - Class in ptolemy.domains.sdf.lib
An actor that repeats a block of input tokens the specified number of times on the output.
Repeat(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.Repeat
Construct an actor in the specified container with the specified name.
repeatReturnType(Type, Type) - Static method in class ptolemy.data.expr.UtilityFunctions
Return the (exact) return type of the repeat function above.
replaceAll - Variable in class ptolemy.actor.lib.string.StringReplace
When the boolean value is true, replace all instances that match the pattern, and when false, replace the first instance.
replaceContainer(String, NamedObj) - Method in class org.kepler.provenance.RecordingParameters
Replace a specific Parameter's container.
replaceDotByDash(String) - Static method in class org.ecoinformatics.seek.ecogrid.MetadataSpecificationInterface
 
ReplaceExt - Variable in class org.sdm.spa.ProcessFileRT
 
replacement - Variable in class ptolemy.actor.lib.string.StringReplace
The replacement string that replaces any matched instance of the pattern.
replacement - Variable in class ptolemy.actor.lib.string.StringSimpleReplace
Deprecated.
The replacement string that replaces any matched instance of the pattern.
replaceParameter(String, Parameter) - Method in class org.kepler.provenance.RecordingParameters
Replace a specific Parameter.
replaceParameter(String, Parameter) - Method in class org.kepler.provenance.TextFileRecording.TextFileRecordingParameters
Replace a Parameter.
replaceParameter(String, Parameter) - Method in class org.kepler.provenance.XMLRecording.XMLRecordingParameters
Deprecated.
Replace a Parameter.
replacePeriods(String) - Static method in class org.kepler.dataproxy.datasource.opendap.TypeMapper
 
replaceRangeJTextArea(String, int, int) - Method in class org.sdm.spa.gui.DoubleShellTextAreaPanel
Replace a range in the JTextArea.
replaceRangeJTextArea(String, int, int) - Method in class ptolemy.gui.ShellTextArea
Replace a range in the JTextArea.
replaceValues(Hashtable) - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.SearchQuery
replace the values in the conditions with the values in the hash
report(Exception) - Method in class ptolemy.actor.gui.CompositeActorSimpleApplication
Report an exception.
report(String) - Method in class ptolemy.actor.gui.CompositeActorSimpleApplication
Report a message to the user.
report(String, Exception) - Method in class ptolemy.actor.gui.CompositeActorSimpleApplication
Report an exception with an additional message.
report(Throwable) - Method in class ptolemy.gui.BasicJApplet
Report an exception.
report(String) - Method in class ptolemy.gui.BasicJApplet
Report a message to the user.
report(String, Throwable) - Method in class ptolemy.gui.BasicJApplet
Report an exception with an additional message.
report(String) - Method in class ptolemy.gui.Top
Report a message to the user by displaying it in a status bar, if there is one.
report(String, Throwable) - Method in class ptolemy.gui.Top
Report a Throwable, which is usually an Exception but can also be an Error.
report(Throwable) - Method in class ptolemy.gui.Top
Report a Throwable, which is usually an Exception but can also be an Error.
report(Frame, String) - Static method in class ptolemy.vergil.basic.BasicGraphFrame
Report a message to either the status bar or message handler.
REPORT_INSTANCE_CHANGED - Static variable in class org.kepler.gui.state.ReportingStateChangeEvent
 
REPORT_LAYOUT_CHANGED - Static variable in class org.kepler.gui.state.ReportingStateChangeEvent
 
ReportAssembler - Class in org.kepler.reporting.rio
This class assists in assembling Report objects with their Items fully fleshed with values (from Provenance)
ReportAssembler() - Constructor for class org.kepler.reporting.rio.ReportAssembler
 
ReportColumn - Class in org.kepler.reporting.rio
 
ReportColumn() - Constructor for class org.kepler.reporting.rio.ReportColumn
 
ReportDesignerPanel - Class in org.kepler.reporting.gui
This class creates a gui pane the allows users to create a report layout for a Kepler Workflow.
ReportDesignerPanel(String, String) - Constructor for class org.kepler.reporting.gui.ReportDesignerPanel
 
ReportDesignerPanel.Factory - Class in org.kepler.reporting.gui
A factory that creates the library panel for the editors.
ReportDesignerPanel.ReportItemButtonListener - Class in org.kepler.reporting.gui
Mouse Listener for the Report Item Buttons
ReportDesignerPanel.SectionHeaderDocumentListener - Class in org.kepler.reporting.gui
 
ReportDesignerPanel.SectionHeaderListener - Class in org.kepler.reporting.gui
SectionHeaderListener - Mouse Listener for the Section static report item
ReportDesignerPanel.TextAreaDocumentListener - Class in org.kepler.reporting.gui
 
ReportDesignerPanel.TextAreaItemMouseListener - Class in org.kepler.reporting.gui
Mouse Listener for the Text area static report item
ReportDesignerPanel.TitleDocumentListener - Class in org.kepler.reporting.gui
 
ReportingListener - Class in org.kepler.reporting
Perform initialization for the reporting module.
ReportingListener() - Constructor for class org.kepler.reporting.ReportingListener
 
ReportingListener(Workspace) - Constructor for class org.kepler.reporting.ReportingListener
 
ReportingListener(NamedObj, String) - Constructor for class org.kepler.reporting.ReportingListener
 
ReportingStateChangeEvent - Class in org.kepler.gui.state
An event that represents a state change in the application, showing both the state that changed and the source of the state change.
ReportingStateChangeEvent(Component, String, NamedObj) - Constructor for class org.kepler.gui.state.ReportingStateChangeEvent
 
ReportInputSource - Class in org.kepler.reporting.rio.fop
This class is a special InputSource decendant for using Report instances as XML sources.
ReportInputSource(ReportLayout) - Constructor for class org.kepler.reporting.rio.fop.ReportInputSource
Constructor for the ProjectTeamInputSource
ReportInstance - Class in org.kepler.reporting.rio
 
ReportInstance() - Constructor for class org.kepler.reporting.rio.ReportInstance
 
ReportInstance(ReportLayout) - Constructor for class org.kepler.reporting.rio.ReportInstance
 
ReportInstanceKAREntryHandler - Class in org.kepler.kar.handlers
 
ReportInstanceKAREntryHandler() - Constructor for class org.kepler.kar.handlers.ReportInstanceKAREntryHandler
 
ReportInstanceKAREntryHandler.Factory - Class in org.kepler.kar.handlers
A factory that creates a KAREntryHandler object.
ReportItemButton - Class in org.kepler.reporting.gui
 
ReportItemButton() - Constructor for class org.kepler.reporting.gui.ReportItemButton
 
ReportItemButton(String, Icon, String) - Constructor for class org.kepler.reporting.gui.ReportItemButton
 
ReportItemButtonListener() - Constructor for class org.kepler.reporting.gui.ReportDesignerPanel.ReportItemButtonListener
 
REPORTLAYOUT - Static variable in class org.kepler.kar.karxml.KarXml
 
ReportLayout - Class in org.kepler.reporting.roml
 
ReportLayout() - Constructor for class org.kepler.reporting.roml.ReportLayout
 
ReportLayoutCacheObject - Class in org.kepler.objectmanager.cache
Class that represents an object in the CacheManager.
ReportLayoutCacheObject() - Constructor for class org.kepler.objectmanager.cache.ReportLayoutCacheObject
 
ReportLayoutCacheObject(String, KeplerLSID) - Constructor for class org.kepler.objectmanager.cache.ReportLayoutCacheObject
construct a new CacheObject
ReportLayoutKAREntryHandler - Class in org.kepler.kar.handlers
 
ReportLayoutKAREntryHandler() - Constructor for class org.kepler.kar.handlers.ReportLayoutKAREntryHandler
 
ReportLayoutKAREntryHandler.Factory - Class in org.kepler.kar.handlers
A factory that creates a KAREntryHandler object.
reportLayouts - Variable in class org.kepler.workflow.Workflow
 
ReportParser - Class in org.kepler.reporting.rio.fop
This class is used to parse XML into a Report class.
ReportParser() - Constructor for class org.kepler.reporting.rio.fop.ReportParser
 
ReportRenderer - Class in org.kepler.reporting.rio.fop
This class converts a report object to XML, PDF, and AWT using JAXP (XSLT) and FOP (XSL:FO).
ReportRenderer() - Constructor for class org.kepler.reporting.rio.fop.ReportRenderer
 
ReportSection - Class in org.kepler.reporting.rio
 
ReportSection() - Constructor for class org.kepler.reporting.rio.ReportSection
 
ReportTest - Class in org.kepler.reporting.rio.test
 
ReportTest() - Constructor for class org.kepler.reporting.rio.test.ReportTest
 
ReportViewerPanel - Class in org.kepler.reporting.gui
 
ReportViewerPanel() - Constructor for class org.kepler.reporting.gui.ReportViewerPanel
 
ReportViewerPanel.Factory - Class in org.kepler.reporting.gui
 
ReportViewerTOC - Class in org.kepler.reporting.gui
 
ReportViewerTOC(String, String) - Constructor for class org.kepler.reporting.gui.ReportViewerTOC
 
ReportViewerTOC.Factory - Class in org.kepler.reporting.gui
A factory that creates the library panel for the editors.
ReportXMLReader - Class in org.kepler.reporting.rio.fop
XMLReader implementation for the Report class.
ReportXMLReader() - Constructor for class org.kepler.reporting.rio.fop.ReportXMLReader
 
repositionLabel() - Method in class ptolemy.vergil.modal.KielerLayoutArcConnector
Tell the connector to reposition its label if it has one.
Repository - Class in org.kepler.objectmanager.repository
This interface represents a repository on the ecogrid
Repository(String, String, String, String, String, String, String, String, String, String, String, String) - Constructor for class org.kepler.objectmanager.repository.Repository
constructor
repository - Variable in class org.kepler.objectmanager.repository.Repository
 
RepositoryAndRunEngineComboBoxRenderer - Class in org.kepler.workflowscheduler.gui
A new rendered class to transform display WorkflowRunEngine/Repository object to workflow run engine/repository name
RepositoryAndRunEngineComboBoxRenderer(String) - Constructor for class org.kepler.workflowscheduler.gui.RepositoryAndRunEngineComboBoxRenderer
Constructor
RepositoryException - Exception in org.kepler.objectmanager.repository
This interface represents a repository on the ecogrid
RepositoryException(String) - Constructor for exception org.kepler.objectmanager.repository.RepositoryException
constructor
repositoryList() - Method in class org.kepler.objectmanager.repository.RepositoryManager
return the list of repositories
RepositoryLocations - Class in org.kepler.modulemanager
Created by David Welker.
RepositoryLocations() - Constructor for class org.kepler.modulemanager.RepositoryLocations
 
RepositoryManager - Class in org.kepler.objectmanager.repository
This class provides functionality to upload and retrieve objects from the Ecogrid repository for Kepler actor/kar objects.
RepositoryManager() - Constructor for class org.kepler.objectmanager.repository.RepositoryManager
default constructor
RepositoryPopup - Class in org.kepler.objectmanager.repository
Created by IntelliJ IDEA.
RepositoryPopup() - Constructor for class org.kepler.objectmanager.repository.RepositoryPopup
 
RepositorySearcher - Interface in org.kepler.gui
An interface for repository searchers.
Reproject - Class in org.kepler.gis.actor.proj
Reproject a GIS data set.
Reproject(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.proj.Reproject
 
reproject(File, CoordinateReferenceSystem) - Static method in class org.kepler.gis.util.RasterUtilities
Reproject a raster file.
reproject(SimpleFeatureCollection, CoordinateReferenceSystem) - Static method in class org.kepler.gis.util.VectorUtilities
Reproject a set of features.
reproject(SimpleFeatureCollection, CoordinateReferenceSystem, CoordinateReferenceSystem) - Static method in class org.kepler.gis.util.VectorUtilities
Reproject a set of features from the specified coordinate reference system.
reprojectToResolveGCP(File, File) - Static method in class org.kepler.gis.util.RasterUtilities
Reproject a raster using gdalwarp to resolve ground control points.
request - Variable in class org.sdm.spa.CreateRequestFromResult
 
requestChange(ChangeRequest) - Method in class ptolemy.actor.CompositeActor
Queue a change request.
requestChange(ChangeRequest) - Method in class ptolemy.actor.lib.hoc.LifeCycleManager
Override the base class to delegate up the hierarchy only if this composite is not deferring change requests, but the the container is.
requestChange(ChangeRequest) - Method in interface ptolemy.kernel.util.Changeable
Request that the given change be executed.
requestChange(ChangeRequest) - Method in class ptolemy.kernel.util.NamedObj
Request that the given change be executed.
requestFinish() - Method in class ptolemy.actor.process.MailboxBoundaryReceiver
Set a local flag requesting that execution of the actor containing this receiver discontinue.
requestFinish() - Method in interface ptolemy.actor.process.ProcessReceiver
Set a local flag requesting that the simulation be finished.
requestFinish() - Method in class ptolemy.domains.pn.kernel.PNQueueReceiver
Set a flag in the receiver to indicate the onset of termination.
requestInitialization(Actor) - Method in class ptolemy.actor.Director
Queue an initialization request with the manager.
requestInitialization(Actor) - Method in class ptolemy.actor.Manager
Queue an initialization request.
requestNamedObjIdChange() - Method in class org.kepler.moml.NamedObjId
 
requireAllCorrectValues - Variable in class ptolemy.actor.lib.NonStrictTest
If true, and the number of tokens seen in wrapup() is not equal to or greater than the number of elements in the correctValues array, then throw an exception.
requireOrderedValues - Variable in class ptolemy.actor.lib.NonStrictTest
If true, then require that inputs appear in the order recorded in the correctValues parameter.
RequireVersion - Class in ptolemy.kernel.attributes
An attribute that requires a particular version of Ptolemy II.
RequireVersion(NamedObj, String) - Constructor for class ptolemy.kernel.attributes.RequireVersion
Construct an attribute with the given name contained by the specified container.
Rerun - Class in ptolemy.actor.gui.test
Run a MoML model over and over again.
Rerun(String) - Constructor for class ptolemy.actor.gui.test.Rerun
Parse the xml file and run it.
rerun() - Method in class ptolemy.moml.MoMLSimpleApplication
Execute the same model again.
RES_MANAGER_URL - Static variable in class org.kepler.hadoop.director.HadoopEngine
 
rescale(int, int, double, double, double, double, int) - Method in class org.ecoinformatics.seek.gis.java_gis.Grid
 
reset(double, double, double) - Method in class org.ecoinformatics.seek.gis.java_gis.Grid
 
reset() - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
Reset the UI to nothing
reset() - Method in class org.kepler.objectmanager.cache.DataCacheObject
Description of the Method
reset() - Method in class org.kepler.sms.util.OntologyConfiguration
 
reset() - Method in class ptolemy.actor.AbstractReceiver
Reset this receiver to its initial state, which in this base class is the same as calling clear().
reset() - Method in interface ptolemy.actor.CommunicationAspect
Reset the CommunicationAspect.
reset() - Method in class ptolemy.actor.IntermediateReceiver
Reset this receiver to its initial state, which in this base class is the same as calling clear().
reset() - Method in class ptolemy.actor.IOPort
If port has default value reset the saved persistent value.
reset - Variable in class ptolemy.actor.lib.Accumulator
If this port receives a True token on any channel, then the accumulator state will be reset to the initial value.
reset - Variable in class ptolemy.actor.lib.Average
The reset port of type BooleanToken.
reset - Variable in class ptolemy.actor.lib.Counter
The reset input port.
reset() - Method in class ptolemy.actor.process.BoundaryDetector
Reset the cache variables in boundary detector.
reset() - Method in class ptolemy.actor.process.MailboxBoundaryReceiver
Reset the local flags of this receiver.
reset() - Method in interface ptolemy.actor.process.ProcessReceiver
Reset the local flags of this receiver.
reset() - Method in interface ptolemy.actor.Receiver
Reset this receiver to its initial state, which is typically either empty (same as calling clear()) or unknown.
reset() - Method in class ptolemy.actor.sched.FixedPointReceiver
Reset the receiver by deleting any contained tokens and setting the status of this receiver to unknown, unless the containing port has no sources, in which case set to known and absent.
reset() - Method in class ptolemy.data.expr.JJTMatrixParserState
 
reset() - Method in class ptolemy.data.expr.JJTPtParserState
 
reset() - Method in class ptolemy.data.expr.Variable
Deprecated.
This capability may be removed to simplify this class. It is not currently used in Ptolemy II, as of version 2.0.
reset - Variable in class ptolemy.domains.de.lib.Derivative
The reset port, which has undeclared type.
reset - Variable in class ptolemy.domains.de.lib.Integrator
The reset port, which has undeclared type.
reset - Variable in class ptolemy.domains.de.lib.PID
The reset port, which has undeclared type.
reset() - Method in class ptolemy.domains.modal.kernel.FSMActor
Reset current state to the initial state.
reset() - Method in class ptolemy.domains.modal.kernel.FSMReceiver
Set the receiver to unknown.
reset() - Method in class ptolemy.domains.modal.kernel.RelationNode
Reset the relation node by setting the former type and difference information to RelationType.INVALID and 0.0 respectively.
reset() - Method in class ptolemy.domains.pn.kernel.PNQueueReceiver
Reset the state variables in the receiver.
reset() - Method in class ptolemy.graph.analysis.strategy.CachedStrategy
Reset the analyzer to invalidate any cached value (i.e., to force recomputation the next time a result of the computation is needed).
reset() - Method in class ptolemy.kernel.util.RecorderListener
Clear the buffer.
reset(String) - Method in class ptolemy.moml.filter.NamedObjClassesSeen
Reset the filter.
reset() - Method in class ptolemy.moml.MoMLParser
Reset the MoML parser.
reset() - Method in class ptolemy.moml.test.RecorderErrorHandler
Clear the buffer.
reset() - Method in class ptolemy.util.test.RecorderMessageHandler
Clear the buffer.
resetAccumulation() - Method in class ptolemy.domains.de.lib.Integrator
Reset value of the accumulator to either an initial value or null.
resetAll() - Method in class ptolemy.moml.MoMLParser
Reset the MoML parser, forgetting about any previously parsed models.
resetAxes() - Method in class ptolemy.plot.PlotBox
Reset the X and Y axes to the ranges that were first specified using setXRange() and setYRange().
resetAxes() - Method in interface ptolemy.plot.PlotBoxInterface
Reset the X and Y axes to the ranges that were first specified using setXRange() and setYRange().
resetCapture() - Static method in class ptolemy.media.javasound.LiveSound
Stop audio capture.
resetCapture() - Method in interface ptolemy.media.javasound.LiveSoundInterface
Stop audio capture.
resetCapture() - Method in class ptolemy.media.javasound.LiveSoundJavaSE
Stop audio capture.
resetColor() - Method in class org.kepler.tagging.gui.DeletableColorIconLabel
 
resetDirty(boolean) - Method in class org.kepler.configuration.ConfigurationProperty
reset the dirty flag
resetExecId(int, Recording) - Method in class org.kepler.util.WorkflowRun
Assign new execId to a run, and entityId revision.
resetFields() - Static method in class org.kepler.authentication.gui.DomainSelectionGUI
resets the static fields to null
resetFields() - Method in class org.kepler.authentication.gui.LDAPLoginGUI
resets the static fields to null
resetFocus() - Method in class org.kepler.authentication.gui.DomainSelectionGUI
 
resetFocus() - Method in class org.kepler.authentication.gui.GAMALoginGUI
 
resetFocus() - Method in class org.kepler.authentication.gui.LDAPLoginGUI
 
resetLocalTime(Time) - Method in class ptolemy.actor.LocalClock
Set local time and commit.
resetOnEachRun - Variable in class ptolemy.actor.lib.RandomSource
If true, this parameter specifies that the random number generator should be reset on each run of the model (in the initialize() method).
resetOnEachRun - Variable in class ptolemy.domains.modal.kernel.FSMActor
Boolean parameter to determine whether seeds are reset on each run.
resetOutputReceivers() - Method in class ptolemy.domains.modal.kernel.FSMDirector
Rebuild the output receivers map and reset the output receivers.
resetPlayback() - Static method in class ptolemy.media.javasound.LiveSound
Stop audio playback.
resetPlayback() - Method in interface ptolemy.media.javasound.LiveSoundInterface
Stop audio playback.
resetPlayback() - Method in class ptolemy.media.javasound.LiveSoundJavaSE
Stop audio playback.
resetRelationList() - Method in class ptolemy.domains.modal.kernel.RelationList
Reset the relation list by resetting each relation node.
resetResultsPanel() - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.DatasetPanel
Reset the results panel to ist blank state
resetSearchPanel() - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.DatasetPanel
Reset the search panel - enabling/disabling buttons as appropriate and hiding progress bar
ResettableTimer - Class in ptolemy.actor.lib
Produce an output after the time specified on the input has elapsed.
ResettableTimer(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.ResettableTimer
Construct an actor with the specified container and name.
resetToggleMenu() - Method in class org.kepler.plotting.Plot
 
resetType(String, Recording) - Method in class org.kepler.util.WorkflowRun
 
resetUnitCategories() - Static method in class ptolemy.data.unit.UnitUtilities
Reset the internal state of the UnitSystem.
ResizableAttributeControllerFactory - Class in ptolemy.vergil.icon
This is attribute that produces a custom node controller for icons that can be interactively resized.
ResizableAttributeControllerFactory(NamedObj, String) - Constructor for class ptolemy.vergil.icon.ResizableAttributeControllerFactory
Construct a new attribute with the given container and name.
ResizableAttributeControllerFactory.ResizeAttributeController - Class in ptolemy.vergil.icon
Custom controller that uses a bounds manipulator to allow the user to resize the image.
ResizablePolygonAttribute - Class in ptolemy.vergil.kernel.attributes
This is an attribute that is rendered as a polygon.
ResizablePolygonAttribute(NamedObj, String) - Constructor for class ptolemy.vergil.kernel.attributes.ResizablePolygonAttribute
Construct an attribute with the given name contained by the specified container.
resize(Complex[], int) - Static method in class ptolemy.math.ComplexArrayMath
Return a new array of length newLength that is formed by either truncating or padding the input array.
resize(Complex[], int, int) - Static method in class ptolemy.math.ComplexArrayMath
Return a new array of length newLength that is formed by either truncating or padding the input array.
resize(double[], int) - Static method in class ptolemy.math.DoubleArrayMath
Return a new array of length newLength that is formed by either truncating or padding the input array.
resize(double[], int, int) - Static method in class ptolemy.math.DoubleArrayMath
Return a new array of length newLength that is formed by either truncating or padding the input array.
resize(float[], int) - Static method in class ptolemy.math.FloatArrayMath
Return a new array of length newLength that is formed by either truncating or padding the input array.
resize(float[], int, int) - Static method in class ptolemy.math.FloatArrayMath
Return a new array of length newLength that is formed by either truncating or padding the input array.
resize(int[], int) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array of length newLength that is formed by either truncating or padding the input array.
resize(int[], int, int) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array of length newLength that is formed by either truncating or padding the input array.
resize(long[], int) - Static method in class ptolemy.math.LongArrayMath
Return a new array of length newLength that is formed by either truncating or padding the input array.
resize(long[], int, int) - Static method in class ptolemy.math.LongArrayMath
Return a new array of length newLength that is formed by either truncating or padding the input array.
ResizeAttributeController(GraphController) - Constructor for class ptolemy.vergil.icon.ResizableAttributeControllerFactory.ResizeAttributeController
Create a controller associated with the specified graph controller.
resizeParent() - Method in class org.ecoinformatics.seek.querybuilder.DBTableFrame
Makes sure the Parent object gets correctly resized
resolve(String) - Method in class org.ecoinformatics.seek.dataquery.DelimiterResolver
This method will figure out a db delimiter when given a metadata delimiter.
resolveDataType(String, Double, Double) - Method in class org.kepler.objectmanager.data.DataTypeResolver
this method will look up the numberType parameter which come from metadata to find the type defined in configure.xml
resolveDBType(String) - Method in class org.ecoinformatics.seek.dataquery.DBDataTypeResolver
Method to find mapping db data type to a given attribute data type
resolveEntity(String, String) - Method in class com.microstar.xml.demo.EventDemo
Resolve an entity and print an event.
resolveEntity(String, String) - Method in class com.microstar.xml.demo.XmlApp
Resolve an external entity.
resolveEntity(String, String) - Method in class com.microstar.xml.demo.XmlApplet
Resolve an external entity.
resolveEntity(String, String) - Method in class com.microstar.xml.driver.SAXDriver
Implement com.microstar.xml.XmlHandler.resolveSystemId Translate to the SAX interface.
resolveEntity(String, String) - Method in class com.microstar.xml.HandlerBase
Resolve an external entity.
resolveEntity(String, String) - Method in interface com.microstar.xml.XmlHandler
Resolve an External Entity.
resolveEntity(String, String) - Method in class ptolemy.configs.test.ValidatingXMLParser.MoMLEntityResolver
Resolve the entity.
resolveEntity(String, String) - Method in class ptolemy.data.expr.XMLParser.EntityResolver
Resolve an entity (a DTD file) by first looking for it locally.
resolveEntity(String, String) - Method in class ptolemy.moml.MoMLParser
Resolve an external entity.
resolveEntity(String, String) - Method in class ptolemy.plot.plotml.PlotBoxMLParser
Resolve an external entity.
resolveEntity(String, String) - Method in class ptolemy.vergil.actor.DocManager
Resolve an external entity.
resolveJavaType(String) - Method in class org.ecoinformatics.seek.dataquery.DBDataTypeResolver
Method to find a mapping between java type and a given metadata data type
resolveTableName(Entity) - Method in class org.ecoinformatics.seek.dataquery.DBTableNameResolver
If the url in this TableEntity is null, we will use the TableEntity name as url.
resolveTypeByAlias(String, Double, Double) - Method in class org.kepler.objectmanager.data.DataTypeResolver
resolves the type based solely on the name.
resolveTypes() - Method in class ptolemy.actor.Manager
Check types on all the connections and resolve undeclared types.
resolveTypes(TypedCompositeActor) - Static method in class ptolemy.actor.TypedCompositeActor
Do type checking and type resolution on the specified composite actor.
RESOLVING_TYPES - Static variable in class ptolemy.actor.Manager
Indicator that type resolution is being done.
RESOURCE_FILE - Static variable in class org.kepler.objectmanager.lsid.KeplerLSID
 
resource_xml_file_name - Variable in class org.eol.WmsdActor
 
RESOURCEBUNDLE_DIR - Static variable in class org.kepler.objectmanager.repository.RepositoryManager
 
RESOURCEBUNDLE_DIR - Static variable in class org.kepler.util.StaticResources
 
restart() - Static method in class org.kepler.Kepler
 
RESTART - Static variable in class ptolemy.actor.lib.CatchExceptionAttribute
String value for the "restart" policy.
restore() - Method in class ptolemy.actor.gui.Configurer
Request restoration of the user settable attribute values to what they were when this object was created.
restore() - Method in class ptolemy.actor.gui.style.StyleConfigurer
Request restoration of the parameter values to what they were when this object was created.
restore() - Method in class ptolemy.plot.PlotFormatter
Restore the original configuration of the plot, and request a a redraw.
restoreBackground(Color) - Method in class ptolemy.gui.JFileChooserBugFix
Restore the background.
restoreCheckpoint() - Method in class org.kepler.objectmanager.cache.LocalRepositoryManager
Reset the list of local repositories to be what it was the last time the setCheckpoint() method was called.
restoreEdge(Edge) - Method in class ptolemy.graph.Graph
Restore an edge if the edge exists in the graph and is presently hidden.
restoreToDefaults() - Method in class ptolemy.actor.gui.Configurer
Restore parameter values to their defaults.
RESTService - Class in org.kepler.actor.rest
The RESTService actor provides the user with a plug-in interface to execute any REST web service.
RESTService(CompositeEntity, String) - Constructor for class org.kepler.actor.rest.RESTService
Construct an actor with the given container and name.
result - Variable in class org.geon.DatabaseQuery
The query result.
result - Variable in class org.geon.TransitiveClosureDBQuery
Result set
result - Variable in class org.sdm.spa.DatabaseWriter
The number of rows successfully updated.
result - Variable in class ptolemy.actor.lib.Dictionary
An output providing the result of a single reading of the dictionary via the readKey input port.
resultArizona - Variable in class org.sdm.spa.CreateRequestFromResult
 
resultArray - Variable in class ptolemy.actor.lib.Dictionary
An output providing the result of a multiple reading of the dictionary via the readKeyArray input port.
ResultHighlighter - Class in org.kepler.gui
This class implements a simple result display where the results from the search are simply highlighted in the tree.
ResultHighlighter(PTree, LibrarySearchResults) - Constructor for class org.kepler.gui.ResultHighlighter
the constructor passes in the library to highlight the results in and the results to highlight. if results is null, the tree is built fully collapsed with no highlights.
ResultHighlighter.Factory - Class in org.kepler.gui
A factory that creates the searcher to search the library
resultIdaho - Variable in class org.sdm.spa.CreateRequestFromResult
 
ResultRecord - Class in org.ecoinformatics.seek.ecogrid.quicksearch
A class that represents a single record from a query result.
ResultRecord(CompositeEntity, String) - Constructor for class org.ecoinformatics.seek.ecogrid.quicksearch.ResultRecord
Create a new ResultRecord with the given name.
ResultRecordComparator - Class in org.ecoinformatics.seek.ecogrid.quicksearch
Class to compare two ResultRecord.
ResultRecordComparator() - Constructor for class org.ecoinformatics.seek.ecogrid.quicksearch.ResultRecordComparator
Default constructor
ResultRecordDetail - Class in org.ecoinformatics.seek.ecogrid.quicksearch
Detail information about a result record.
ResultRecordDetail(NamedObj, String) - Constructor for class org.ecoinformatics.seek.ecogrid.quicksearch.ResultRecordDetail
Construct a new detail record with the given name and containing record.
results - Variable in class org.kepler.gui.LibrarySearchResultPane
the search results to display in the pane
resultsOutput - Variable in class ptolemy.actor.lib.test.SearchTest
Output whether the download failed or passed
ResultTreeRebuilder - Class in org.kepler.gui
This class builds the search results by traversing the tree and trimming any sub-nodes that do not have a result in them.
ResultTreeRebuilder(PTree, LibrarySearchResults) - Constructor for class org.kepler.gui.ResultTreeRebuilder
the constructor passes in the library to highlight the results in and the results to highlight. if results is null, the tree is built fully collapsed with no highlights.
ResultTreeRebuilder.Factory - Class in org.kepler.gui
A factory that creates the searcher to search the library
ResultTreeRoot - Class in org.ecoinformatics.seek.ecogrid.quicksearch
The root of a result tree.
ResultTreeRoot(String) - Constructor for class org.ecoinformatics.seek.ecogrid.quicksearch.ResultTreeRoot
Construct the root node, setting its name to "name".
ResultTreeRoot(String, Workspace) - Constructor for class org.ecoinformatics.seek.ecogrid.quicksearch.ResultTreeRoot
 
resume() - Method in class ptolemy.actor.Director
Start or resume the actor, which means (re)start the local clock.
resume() - Method in class ptolemy.actor.Manager
If the model is paused, resume execution.
resume() - Method in class ptolemy.domains.continuous.kernel.ContinuousDirector
Resume the actor at the specified time.
resumeActor(NamedObj) - Method in class ptolemy.actor.Director
Resume the execution of an actor that was previously blocked because it didn't have all the resources it needed for execution.
resumeActor(NamedObj) - Method in class ptolemy.actor.sched.StaticSchedulingDirector
Resume the execution of an actor that was previously blocked because it didn't have all the resources it needed for execution.
resumeActor(NamedObj) - Method in class ptolemy.domains.de.kernel.DEDirector
Resume the execution of an actor that was previously blocked because it didn't have all the resources it needed for execution.
resumeRun() - Method in class ptolemy.actor.gui.ModelPane
If the model has a manager and is executing, then resume execution by calling the resume() method of the manager.
resumeRun() - Method in class ptolemy.actor.gui.run.CustomizableRunPane
If the model has a manager and is executing, then resume execution by calling the resume() method of the manager.
retainAll(Collection) - Method in class ptolemy.graph.LabeledList
Unsupported optional method of the List interface.
RETHROW - Static variable in interface ptolemy.moml.ErrorHandler
Indicator to request that the exception be rethrown.
retrieve(String) - Method in class ptolemy.domains.pn.demo.QR.ArrayIndex
Retrieve a value from the associate array using the supplied key.
returncode - Variable in class org.geon.Scp
The return code of the execution.
returncode - Variable in class org.sdm.spa.Ssh2Exec
The return code of the execution.
RETURNFIELD - Static variable in class org.ecoinformatics.seek.ecogrid.MetadataSpecificationInterface
Description of the Field
returnField - Variable in class org.ecoinformatics.seek.ecogrid.quicksearch.SearchQuery
 
RETURNFIELDENTITY - Static variable in class org.ecoinformatics.seek.ecogrid.MetadataSpecificationInterface
Description of the Field
RETURNFIELDTITLE - Static variable in class org.ecoinformatics.seek.ecogrid.MetadataSpecificationInterface
Description of the Field
RETURNFIELDTYPE - Static variable in class org.ecoinformatics.seek.ecogrid.MetadataSpecificationInterface
Description of the Field
RETURNFIELDTYPELIST - Static variable in class org.ecoinformatics.seek.ecogrid.MetadataSpecificationInterface
Description of the Field
ReturnNonZero - Class in ptolemy.actor.lib.test
A class to print to stdout then exit with a non-zero value.
ReturnNonZero() - Constructor for class ptolemy.actor.lib.test.ReturnNonZero
 
returnQueryable(KeplerLSID) - Static method in class org.kepler.reporting.rio.util.ProvenanceUtil
 
returnResult(String) - Method in class org.sdm.spa.gui.DoubleShellTextAreaPanel
Return the result of a command evaluation.
returnResult(String) - Method in class ptolemy.gui.ShellTextArea
Return the result of a command evaluation.
revalidate() - Method in class org.kepler.workflowrunmanager.gui.DurationCellRenderer
 
revalidate() - Method in class org.kepler.workflowrunmanager.gui.WRMDefaultTableCellRenderer
 
revalidate() - Method in class ptolemy.vergil.actor.LayoutHint.LayoutHintItem
Check if the head and tail objects have been moved.
reverse() - Method in class ptolemy.data.ArrayToken
Return a new ArrayToken whose elements are in reverse order of this ArrayToken.
reverseCompareCode(int) - Static method in class ptolemy.graph.DirectedAcyclicGraph
Return the opposite of the given compare return code, as if the arguments had been given to compare in the reverse order.
revokeProxy(ProxyEntity) - Method in class org.kepler.authentication.AuthenticationManager
 
RExpression - Class in org.ecoinformatics.seek.R
The RExpression actor is an actor designed to run an R script or function with inputs and outputs determined by the ports created by the user.
RExpression(CompositeEntity, String) - Constructor for class org.ecoinformatics.seek.R.RExpression
Construct an actor with the given container and name.
RExpression - Class in ptolemy.actor.lib.r
The RExpression actor is an actor designed to run an R script or function with inputs and outputs determined by the ports created by the user.
RExpression(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.r.RExpression
Construct an actor with the given container and name.
RExpression2 - Class in org.ecoinformatics.seek.R
The RExpression actor is an actor designed to run an R script or function with inputs and outputs determined by the ports created by the user.
RExpression2(CompositeEntity, String) - Constructor for class org.ecoinformatics.seek.R.RExpression2
Construct an actor with the given container and name.
RExpression2 - Class in ptolemy.actor.lib.r
The RExpression actor is an actor designed to run an R script or function with inputs and outputs determined by the ports created by the user.
RExpression2(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.r.RExpression2
Construct an actor with the given container and name.
rFlushConsole(Rengine) - Method in class org.ecoinformatics.seek.R.RConsole
 
rFlushConsole(Rengine) - Method in class ptolemy.actor.lib.r.RConsole
Flush the console.
Rician - Class in ptolemy.actor.lib
Produce a random sequence with a Rician distribution.
Rician(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Rician
Construct an actor with the given container and name.
right() - Method in class com.jgoodies.forms.factories.Borders.EmptyBorder
Returns this border's right size.
RIGHT - Static variable in class com.jgoodies.forms.layout.CellConstraints
Put the component in the right.
RIGHT - Static variable in class com.jgoodies.forms.layout.ColumnSpec
By default put components in the right.
right - Variable in class org.kepler.gis.actor.SplitBoundingBox
Deprecated.
The longitude of the right of the bounding box.
RIGHT - Static variable in class org.mlc.swing.layout.LayoutConstraintsManager
 
right - Variable in class ptolemy.actor.lib.logic.Comparator
The right input port, which has type double.
rightArrow - Variable in class ptolemy.actor.lib.gui.ArrowKeySensor
Output port, which has type IntToken.
rightChild - Variable in class ptolemy.actor.lib.comm.HuffmanBasic.Node
The right child of the node.
rightPadding - Static variable in class org.geon.TernaryDiagram
 
RIGHTPARENTH - Static variable in class org.ecoinformatics.seek.dataquery.DBTablesGenerator
 
RIGHTPARENTH - Static variable in interface org.kepler.objectmanager.data.db.Constraint
 
rightShift(int) - Method in class ptolemy.data.IntToken
Returns a token representing the result of shifting the bits of this token towards the least significant bit, filling the most significant bits with the sign of the value.
rightShift(int) - Method in class ptolemy.data.LongToken
Returns a token representing the result of shifting the bits of this token towards the least significant bit, filling the most significant bits with the sign of the value.
rightShift(int) - Method in class ptolemy.data.ScalarToken
Returns a token representing the result of shifting the bits of this token towards the least significant bit, filling the most significant bits with the sign of the value.
rightShift(int) - Method in class ptolemy.data.ShortToken
Returns a token representing the result of shifting the bits of this token towards the least significant bit, filling the most significant bits with the sign of the value.
rightShift(int) - Method in class ptolemy.data.UnsignedByteToken
Returns a token representing the result of shifting the bits of this token towards the least significant bit, filling the most significant bits with the sign of the value.
RIORenderer - Class in org.kepler.reporting.rio
Deprecated.
please use the ReportConverter that uses FOP-XSL for a more robust solution
RIORenderer() - Constructor for class org.kepler.reporting.rio.RIORenderer
Deprecated.
 
RIORenderer.PDFViewer - Enum in org.kepler.reporting.rio
Deprecated.
 
rLoadHistory(Rengine, String) - Method in class org.ecoinformatics.seek.R.RConsole
 
rLoadHistory(Rengine, String) - Method in class ptolemy.actor.lib.r.RConsole
Load the history.
rm - Variable in class org.kepler.reporting.gui.PropertiesTable
 
ro - Variable in class ptolemy.actor.lib.colt.ColtZeta
ro.
rockName - Variable in class org.geon.NextDiagram
 
RockSample - Class in org.geon
 
RockSample() - Constructor for class org.geon.RockSample
 
rollback() - Method in class org.kepler.plotting.Row
 
rollback() - Method in class org.kepler.util.sql.DatabaseType
Rollback the changes in the current transaction.
rollBackToCommittedState() - Method in interface ptolemy.actor.continuous.ContinuousStatefulComponent
Roll back to committed state.
rollBackToCommittedState() - Method in class ptolemy.domains.continuous.kernel.ContinuousDirector
Roll back all actors that implement ContinuousStatefulComponent to committed state, and set local model time to the start of the integration period.
rollBackToCommittedState() - Method in class ptolemy.domains.continuous.kernel.ContinuousIntegrator
Roll back to committed state.
rollBackToCommittedState() - Method in class ptolemy.domains.continuous.kernel.HybridModalDirector
Roll back to committed state.
ROLLOVER_ICON - Static variable in class org.kepler.tagging.gui.ToolbarUtilities
This key is used in an action to specify a rollover icon used in toolbars.
ROLLOVER_SELECTED_ICON - Static variable in class org.kepler.tagging.gui.ToolbarUtilities
This key is used in an action to specify a rollover selected icon used in toolbars.
rollRevision(KeplerLSID, Recording) - Method in class org.kepler.util.WorkflowRun
Whenever a run is changed, update revision in OM, update run's execLSID, and update workflow_exec lsid in provenance.
root - Variable in class ptolemy.domains.sdf.lib.RaisedCosine
If true, use the square root of the raised cosine instead of the raised cosine.
RootConfigurationProperty - Class in org.kepler.configuration
Class that represents a root configuration property within kepler
RootConfigurationProperty(Module, File) - Constructor for class org.kepler.configuration.RootConfigurationProperty
construct a root configuration property within a module with a specific file
RootConfigurationProperty(Module, String) - Constructor for class org.kepler.configuration.RootConfigurationProperty
 
RootConfigurationProperty(Module, String, ConfigurationProperty) - Constructor for class org.kepler.configuration.RootConfigurationProperty
 
RootConfigurationProperty(Module, String, ConfigurationNamespace) - Constructor for class org.kepler.configuration.RootConfigurationProperty
 
RootConfigurationProperty(Module, String, ConfigurationNamespace, ConfigurationProperty) - Constructor for class org.kepler.configuration.RootConfigurationProperty
 
rootNode() - Method in class ptolemy.data.expr.JJTMatrixParserState
 
rootNode() - Method in class ptolemy.data.expr.JJTPtParserState
 
roots(int) - Method in class ptolemy.math.Complex
Return the nth roots of this complex number in an array.
roots(Complex, int) - Static method in class ptolemy.math.Complex
Return the nth roots of the given complex number in an array.
rotate(Image, int) - Static method in class ptolemy.actor.lib.image.Transform
Rotate an Image.
RotateOrFlipPorts - Class in ptolemy.vergil.toolbox
Action to rotate or flip ports.
RotateOrFlipPorts(int, String) - Constructor for class ptolemy.vergil.toolbox.RotateOrFlipPorts
Create an action to rotate the ports.
rotation - Variable in class ptolemy.vergil.kernel.attributes.ShapeAttribute
The angle of rotation in radians.
rotationInDegrees - Variable in class ptolemy.actor.lib.image.ImageRotate
The amount of of rotation in degrees.
Round - Class in ptolemy.actor.lib.conversions
Produce an output token on each firing with a value that is equal to the specified rounded value of the input.
Round(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.conversions.Round
Construct an actor with the given container and name.
round(double, Precision) - Static method in class ptolemy.math.Quantizer
Return the fixed point number that is nearest to the specified value, but has the given precision, possibly introducing quantization or overflow errors.
round(BigDecimal, Precision) - Static method in class ptolemy.math.Quantizer
Return the fixed point number that is nearest to the specified value, but has the given precision, possibly introducing quantization or overflow errors.
round(FixPoint, Precision, Overflow) - Static method in class ptolemy.math.Quantizer
Return the fixed point number that is nearest to the specified value, but has the given precision, possibly introducing quantization or overflow errors.
round(BigDecimal) - Method in class ptolemy.math.Rounding
Round the BigDecimal value using the appropriate rounding strategy.
round(BigDecimal) - Method in class ptolemy.math.Rounding.RoundCeiling
 
round(BigDecimal) - Method in class ptolemy.math.Rounding.RoundDown
 
round(BigDecimal) - Method in class ptolemy.math.Rounding.RoundFloor
 
round(BigDecimal) - Method in class ptolemy.math.Rounding.RoundHalfCeiling
 
round(BigDecimal) - Method in class ptolemy.math.Rounding.RoundHalfDown
 
round(BigDecimal) - Method in class ptolemy.math.Rounding.RoundHalfEven
 
round(BigDecimal) - Method in class ptolemy.math.Rounding.RoundHalfFloor
 
round(BigDecimal) - Method in class ptolemy.math.Rounding.RoundHalfUp
 
round(BigDecimal) - Method in class ptolemy.math.Rounding.RoundUp
 
roundCeiling(BigDecimal) - Static method in class ptolemy.math.Rounding
Rounding mode to round towards positive infinity.
roundDown(double, Precision) - Static method in class ptolemy.math.Quantizer
Return the nearest fixed point number with less than or equal magnitude that has the given precision, possibly introducing quantization or overflow errors.
roundDown(BigDecimal, Precision) - Static method in class ptolemy.math.Quantizer
Return the nearest fixed point number with less than or equal magnitude that has the given precision, possibly introducing quantization or overflow errors.
roundDown(FixPoint, Precision, Overflow) - Static method in class ptolemy.math.Quantizer
Return the nearest fixed point number with less than or equal magnitude that has the given precision, possibly introducing quantization or overflow errors.
roundDown(BigDecimal) - Static method in class ptolemy.math.Rounding
Rounding mode to round towards zero.
roundFloor(BigDecimal) - Static method in class ptolemy.math.Rounding
Rounding mode to round towards negative infinity.
roundHalfCeiling(BigDecimal) - Static method in class ptolemy.math.Rounding
Rounding mode to round towards "nearest neighbor" unless both neighbors are equidistant, in which case round "ceiling".
roundHalfDown(BigDecimal) - Static method in class ptolemy.math.Rounding
Rounding mode to round towards "nearest neighbor" unless both neighbors are equidistant, in which case round down.
roundHalfEven(BigDecimal) - Static method in class ptolemy.math.Rounding
Rounding mode to round towards the "nearest neighbor" unless both neighbors are equidistant, in which case, round towards the even neighbor.
roundHalfFloor(BigDecimal) - Static method in class ptolemy.math.Rounding
Rounding mode to round towards "nearest neighbor" unless both neighbors are equidistant, in which case round "ceiling".
roundHalfUp(BigDecimal) - Static method in class ptolemy.math.Rounding
Rounding mode to round towards "nearest neighbor" unless both neighbors are equidistant, in which case round up.
rounding - Variable in class ptolemy.actor.lib.conversions.DoubleToFix
The rounding strategy used, such as "nearest" or "truncate".
rounding - Variable in class ptolemy.actor.lib.conversions.FixToFix
The rounding strategy used, such as "nearest" or "truncate".
Rounding - Class in ptolemy.math
The Rounding class provides a type safe enumeration of strategies for handling loss of numeric resolution when rounding.
Rounding(String) - Constructor for class ptolemy.math.Rounding
Construct a Rounding object with the given String name.
rounding - Variable in class ptolemy.vergil.icon.NameIcon
The amount of rounding of the corners.
rounding - Variable in class ptolemy.vergil.kernel.attributes.RectangleAttribute
The amount of rounding of the corners.
Rounding.RoundCeiling - Class in ptolemy.math
Rounding class implementing the round ceiling strategy.
Rounding.RoundDown - Class in ptolemy.math
Rounding class implementing the round down strategy.
Rounding.RoundFloor - Class in ptolemy.math
Rounding class implementing the round floor strategy.
Rounding.RoundHalfCeiling - Class in ptolemy.math
Rounding class implementing the round half ceiling strategy.
Rounding.RoundHalfDown - Class in ptolemy.math
Rounding class implementing the round half down strategy.
Rounding.RoundHalfEven - Class in ptolemy.math
Rounding class implementing the round half even strategy.
Rounding.RoundHalfFloor - Class in ptolemy.math
Rounding class implementing the round half floor strategy.
Rounding.RoundHalfUp - Class in ptolemy.math
Rounding class implementing the round half up strategy.
Rounding.RoundUp - Class in ptolemy.math
Rounding class implementing the round up strategy.
roundNearestEven(double, Precision) - Static method in class ptolemy.math.Quantizer
Return the fixed point number that is nearest to the specified value, but has the given precision, possibly introducing quantization or overflow errors.
roundNearestEven(BigDecimal, Precision) - Static method in class ptolemy.math.Quantizer
Return the fixed point number that is nearest to the specified value, but has the given precision, possibly introducing quantization or overflow errors.
roundNearestEven(FixPoint, Precision, Overflow) - Static method in class ptolemy.math.Quantizer
Return the fixed point number that is nearest to the specified value, but has the given precision, possibly introducing quantization or overflow errors.
roundToInt(double) - Static method in class ptolemy.math.ExtendedMath
Round to the nearest integer.
roundToZero(double, Precision) - Static method in class ptolemy.math.Quantizer
Return the fixed point number that is nearest to the specified value, but has magnitude no greater that the specified value, and has the given precision, possibly introducing quantization or overflow errors.
roundToZero(BigDecimal, Precision) - Static method in class ptolemy.math.Quantizer
Return the fixed point number that is nearest to the specified value, but has magnitude no greater that the specified value, and has the given precision, possibly introducing quantization or overflow errors.
roundToZero(FixPoint, Precision, Overflow) - Static method in class ptolemy.math.Quantizer
Return the fixed point number that is nearest to the specified value, but has magnitude no greater than the specified value, and has the given precision, possibly introducing quantization or overflow errors.
roundUp(double, Precision) - Static method in class ptolemy.math.Quantizer
Return the smallest greater than or equal fixed point number that has the given precision, possibly introducing quantization or overflow errors.
roundUp(BigDecimal, Precision) - Static method in class ptolemy.math.Quantizer
Return the smallest greater than or equal fixed point number that has the given precision, possibly introducing quantization or overflow errors.
roundUp(FixPoint, Precision, Overflow) - Static method in class ptolemy.math.Quantizer
Return the smallest greater than or equal fixed point number that has the given precision, possibly introducing quantization or overflow errors.
roundUp(BigDecimal) - Static method in class ptolemy.math.Rounding
Rounding mode to round away from zero.
route() - Method in class ptolemy.vergil.actor.KielerLayoutConnector
Tell the connector to route itself between the current positions of the head and tail sites.
route() - Method in class ptolemy.vergil.modal.KielerLayoutArcConnector
Tell the connector to route itself between the current positions of the head and tail sites.
Row - Class in org.kepler.plotting
Created by IntelliJ IDEA.
Row(String, String, String, PointType, Color, PlotEditor) - Constructor for class org.kepler.plotting.Row
 
row - Variable in class ptolemy.actor.lib.SubMatrix
The starting row number.
row() - Method in class ptolemy.data.expr.MatrixParser
 
row - Variable in class ptolemy.vergil.actor.lib.LEDMatrix
The row of the LED to be illuminated.
ROW_ALIGNMENT - Static variable in class org.kepler.reporting.rio.DynamicReportItem
 
ROW_ALIGNMENT - Static variable in class org.kepler.reporting.rio.StaticReportItemHR
 
ROW_ALIGNMENT - Static variable in class org.kepler.reporting.rio.StaticReportItemSection
 
ROW_ALIGNMENT - Static variable in class org.kepler.reporting.rio.StaticReportItemText
 
ROW_BREAK_BEFORE - Static variable in class org.kepler.reporting.rio.StaticReportItemSection
 
ROW_SCALE - Static variable in class org.kepler.reporting.rio.DynamicReportItem
 
ROW_SCALE - Static variable in class org.kepler.reporting.rio.StaticReportItemImage
 
ROW_SIZE - Static variable in class org.kepler.reporting.rio.StaticReportItemSection
 
ROW_SIZE - Static variable in class org.kepler.reporting.rio.StaticReportItemText
 
ROW_WEIGHT - Static variable in class org.kepler.reporting.rio.StaticReportItemText
 
ROW_WIDTH - Static variable in class org.kepler.reporting.rio.StaticReportItemHR
 
ROWDELIM - Static variable in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreDataSource
 
RowEditorModel - Class in org.kepler.reporting.gui
 
RowEditorModel() - Constructor for class org.kepler.reporting.gui.RowEditorModel
 
rowInfo - Variable in class org.geon.Get2DPoint
Composition info.
rowInfo - Variable in class org.geon.GetPoint
Hold the mineral composition info.
rowInfo - Variable in class org.geon.NextDiagram
 
ROWMAJOR - Static variable in class org.kepler.objectmanager.data.db.Entity
static variable for ROWMAJOR tables
rowOrigins - Variable in class com.jgoodies.forms.layout.FormLayout.LayoutInfo
Holds the origins of the rows.
rows - Variable in class ptolemy.domains.sdf.lib.DoubleToMatrix
Deprecated.
The number of rows.
rows - Variable in class ptolemy.domains.sdf.lib.MatrixJoin
The number of matrices to arrange top to bottom on the output.
rows - Variable in class ptolemy.domains.sdf.lib.MatrixToDouble
Deprecated.
The number of rows.
rows - Variable in class ptolemy.domains.sdf.lib.MatrixToSequence
The number of rows in the input.
rows - Variable in class ptolemy.domains.sdf.lib.SequenceToMatrix
The number of rows in the output.
rows - Variable in class ptolemy.vergil.actor.lib.LEDMatrix
The number of rows.
rowsDisplayed - Variable in class ptolemy.actor.lib.gui.Display
The vertical size of the display, in rows.
rowsDisplayed - Variable in class ptolemy.vergil.toolbox.TextEditorConfigureFactory
The vertical size of the display, in rows.
rowsDisplayed - Variable in class ptolemy.vergil.toolbox.TextEditorTableauFactory
The vertical size of the display, in rows.
rowSpan - Variable in class ptolemy.actor.lib.SubMatrix
The span of rows.
RowSpec - Class in com.jgoodies.forms.layout
Specifies rows in FormLayout by their default orientation, start size and resizing behavior.
RowSpec(FormSpec.DefaultAlignment, Size, double) - Constructor for class com.jgoodies.forms.layout.RowSpec
Constructs a RowSpec from the given default orientation, size, and resize weight.
RowSpec(Size) - Constructor for class com.jgoodies.forms.layout.RowSpec
Constructs a RowSpec for the given size using the default alignment, and no resizing.
RowSpec(String) - Constructor for class com.jgoodies.forms.layout.RowSpec
Constructs a RowSpec from the specified encoded description.
rowSplit - Variable in class ptolemy.domains.sdf.lib.MatrixSplit
An array specifying the number of rows in the output matrices.
rowToJSONArray(JSONTokener) - Static method in class org.json.CDL
Produce a JSONArray of strings from a row of comma delimited values.
rowToJSONObject(JSONArray, JSONTokener) - Static method in class org.json.CDL
Produce a JSONObject from a row of comma delimited text, using a parallel JSONArray of strings to provides the names of the elements.
rowToString(JSONArray) - Static method in class org.json.CDL
Produce a comma delimited text row from a JSONArray.
rowVector - Variable in class ptolemy.actor.lib.ArrayToMatrix
If true, then convert the array to a matrix with one row and multiple columns (a row vector), and otherwise, convert the input to a matrix with one column and multiple rows (a column vector).
RP_1 - Variable in class ptolemy.domains.pn.demo.QR.ND_3
 
RP_10 - Variable in class ptolemy.domains.pn.demo.QR.ND_4
 
RP_11 - Variable in class ptolemy.domains.pn.demo.QR.ND_5
 
RP_12 - Variable in class ptolemy.domains.pn.demo.QR.ND_5
 
RP_2 - Variable in class ptolemy.domains.pn.demo.QR.ND_3
 
RP_3 - Variable in class ptolemy.domains.pn.demo.QR.ND_3
 
RP_4 - Variable in class ptolemy.domains.pn.demo.QR.ND_3
 
RP_5 - Variable in class ptolemy.domains.pn.demo.QR.ND_4
 
RP_6 - Variable in class ptolemy.domains.pn.demo.QR.ND_4
 
RP_7 - Variable in class ptolemy.domains.pn.demo.QR.ND_4
 
RP_8 - Variable in class ptolemy.domains.pn.demo.QR.ND_4
 
RP_9 - Variable in class ptolemy.domains.pn.demo.QR.ND_4
 
RPAREN - Static variable in interface ptolemy.moml.unit.UParserConstants
RegularExpression Id.
rReadConsole(Rengine, String, int) - Method in class org.ecoinformatics.seek.R.RConsole
 
rReadConsole(Rengine, String, int) - Method in class ptolemy.actor.lib.r.RConsole
Read from the console.
rSaveHistory(Rengine, String) - Method in class org.ecoinformatics.seek.R.RConsole
 
rSaveHistory(Rengine, String) - Method in class ptolemy.actor.lib.r.RConsole
Save history.
rShowMessage(Rengine, String) - Method in class org.ecoinformatics.seek.R.RConsole
 
rShowMessage(Rengine, String) - Method in class ptolemy.actor.lib.r.RConsole
Show a message.
ruleSetFilename - Variable in class org.ecoinformatics.seek.garp.GarpAlgorithm
This is the name to be given to the file containing the RuleSet information.
ruleSetFilename - Variable in class org.ecoinformatics.seek.garp.GarpPrediction
This is the file name of the file containing the RuleSet data.
ruleSetFileName - Variable in class org.ecoinformatics.seek.gis.java_gis.GARPSummary
'ruleSetFileName is the ruleSetFile which is needed later to reproduce the predicted distribution.
ruleSetFilenameOutput - Variable in class org.ecoinformatics.seek.garp.GarpAlgorithm
This is the name of the file containing the RuleSet information.
ruleSetFilenameParameter - Variable in class org.ecoinformatics.seek.garp.GarpAlgorithm
This is the name to be given to the file containing the RuleSet information.
ruleSetFilenameParameter - Variable in class org.ecoinformatics.seek.garp.GarpPrediction
This is the file name of the file containing the RuleSet data.
run() - Method in class org.ecoinformatics.seek.dataquery.DBTablesGenerator
A thread to call some private method to generate table.
run() - Method in class org.geon.ExecutionThread
 
run() - Method in class org.geon.ValidationThread
 
run() - Method in class org.kepler.loader.CreateIntroFileTask
 
run() - Method in class org.kepler.objectmanager.cache.DataCacheObject
 
run() - Method in class org.kepler.ssh.TestExecMulti.SshTest
 
run() - Method in class ptolemy.actor.Manager
Execute the model, catching all exceptions.
run() - Method in class ptolemy.actor.parameters.test.junit.SharedParameterJUnitTest
Instantiate a CompositeActor with a SharedParameter and then clone it.
run() - Method in class ptolemy.actor.process.Branch
Repeatedly transfer a single token between the producer receiver and the consumer receiver as long as the branch is active or until a TerminateProcessException is thrown.
run() - Method in class ptolemy.actor.process.BranchController
Begin executing the branches associated with this branch controller so that they will begin transferring data in their assigned channels.
run() - Method in class ptolemy.actor.process.NotifyThread
Call NotifyAll() on the lock object (or objects) passed to this class in its constructor.
run() - Method in class ptolemy.actor.process.ProcessThread
Initialize the actor, iterate it through the execution cycle until it terminates.
run() - Method in class ptolemy.component.AtomicComponent
Execute the component, which in this base class means doing nothing and returning immediately.
run() - Method in interface ptolemy.component.Component
Execute the component.
run() - Method in class ptolemy.component.ComponentActor
Execute the component, which in this base class means doing nothing and returning immediately.
run() - Method in class ptolemy.component.ComponentDirector
Execute the component.
run() - Method in class ptolemy.component.domains.ptinyos.PtinyOSDirector
Execute the component.
run() - Method in class ptolemy.domains.de.kernel.DEThreadActor
Implement this method to define the job of the threaded actor.
run() - Method in class ptolemy.kernel.test.junit.ExampleSystemJUnitTest
Create the example system and compare the value returned by the toString() method to the known good results.
run() - Method in class ptolemy.kernel.util.test.AccessThread
 
run() - Method in class ptolemy.kernel.util.test.PtestWorkspace
 
run() - Method in class ptolemy.kernel.util.test.TestWorkspace
 
run() - Method in class ptolemy.kernel.util.test.TestWorkspace2.Notification
 
run() - Method in class ptolemy.kernel.util.test.TestWorkspace2
Start a thread for an instance of the inner class "Notification", obtain read access on the workspace 3 times, call wait(obj) on the workspace, ask the inner class to get a write access on the workspace and return after relinquishing the read accesses on the workspace.
run() - Method in class ptolemy.moml.test.UnloadModelTest.UnloadThread
 
run() - Method in class ptolemy.plot.PlotLive
This is the body of a thread that repeatedly calls addPoints() if the plot is active.
run() - Method in class ptolemy.util.RunnableExceptionCatcher
Execute the runnable.
run() - Method in class ptolemy.util.test.junit.JUnitTclTestRun
Run a test.
run() - Method in class ptolemy.util.test.ThreadStreamExec
Start the streamExec.
run2() - Method in class org.kepler.ssh.TestExecMulti.SshTest
 
RUN_DATE_FORMAT - Static variable in class org.kepler.util.WorkflowRun
 
runAllDemos(String, Configuration) - Static method in class ptolemy.actor.gui.HTMLAbout
Run all the local .xml files that are linked to from an HTML file.
runApplication() - Static method in class org.kepler.Kepler
Run the appropriate application based on command line arguments.
runBeforeExport - Variable in class ptolemy.vergil.basic.export.web.WebExportParameters
If true, run the model before exporting (to open plotter or other display windows that get exported).
runBeforeExport - Variable in class ptolemy.vergil.basic.ExportParameters
If true, run the model before exporting (to open plotter or other display windows that get exported).
runCarTracking() - Method in class ptolemy.vergil.basic.layout.kieler.test.junit.KielerJUnitTestExtendedModels
Test the layout of the CarTracking model.
RunCompositeActor - Class in ptolemy.actor.lib.hoc
This is a composite actor that can execute the contained model completely, as if it were a top-level model, on each firing.
RunCompositeActor() - Constructor for class ptolemy.actor.lib.hoc.RunCompositeActor
Construct an actor in the default workspace with no container and an empty string as its name.
RunCompositeActor(Workspace) - Constructor for class ptolemy.actor.lib.hoc.RunCompositeActor
Construct a RunCompositeActor in the specified workspace with no container and an empty string as a name.
RunCompositeActor(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.hoc.RunCompositeActor
Construct a RunCompositeActor with a name and a container.
runCSPDomain() - Method in class ptolemy.vergil.basic.layout.kieler.test.junit.KielerJUnitTestExtendedModels
Test the layout of the CSPDomain FSM Model.
RunExportModel(String) - Method in class ptolemy.vergil.basic.export.test.junit.ExportModelJUnitTest
Export a model.
RunExportModel(String) - Method in class ptolemy.vergil.basic.export.test.junit.ExportModelJUnitTestBatch
Export a model.
RunFrame(CompositeActor, Tableau) - Constructor for class ptolemy.actor.gui.RunTableau.RunFrame
Construct a frame to control the specified Ptolemy II model.
runGridDensityByArray(String, String, double) - Method in class com.numericsolutions.geomodeltools.GeomodelGlue
 
runGridDensityByArrayDimension(String, double, double, double, double, double, double, double, double) - Method in class com.numericsolutions.geomodeltools.GeomodelGlue
 
RunIdHandler - Class in org.kepler.webview.server.handler
Handler to get information about a workflow run.
RunIdHandler(WebViewServer) - Constructor for class org.kepler.webview.server.handler.RunIdHandler
 
runInterrupter() - Method in class ptolemy.vergil.basic.layout.kieler.test.junit.KielerJUnitTestExtendedModels
Test the layout of the Interrupter FSM Model.
RunLayoutFrame - Class in ptolemy.actor.gui.run
A top-level frame for editing the layout of a customizable run control panel.
RunLayoutFrame(CompositeActor, Tableau, CustomizableRunPane) - Constructor for class ptolemy.actor.gui.run.RunLayoutFrame
Construct a frame to control the specified Ptolemy II model.
runLSIDs - Variable in class org.kepler.provenance.manager.TransferComponent
A parameter that contains a set of parameters, each of which has an provenance execution KeplerLSID as the value.
runModel(CompositeActor) - Method in class org.kepler.ExecutionEngine
run a single model in the current thread
RunModel(String) - Method in class ptolemy.util.test.junit.Auto32Tests
Execute a model.
runModel(String, String, boolean, boolean, int, boolean, String) - Method in class ptolemy.util.test.junit.AutoCGKnownFailedTests
Generate, compile and run code for a model known to fail.
runModel(String, String, boolean, boolean, int, boolean, String) - Method in class ptolemy.util.test.junit.AutoCGTests
Generate, compile and run code for a model.
RunModel(String) - Method in class ptolemy.util.test.junit.AutoKnownFailedTests
Execute a model.
RunModel(String) - Method in class ptolemy.util.test.junit.AutoNameArchTests
Execute a model and time out after 900000 ms.
RunModel(String) - Method in class ptolemy.util.test.junit.AutoTests
Execute a model and time out after 900000 ms.
runModelInline(String) - Method in class ptolemy.util.test.junit.AutoCGCInlineTests
Generate, compile and run inline code for a model.
runModelInline(String) - Method in class ptolemy.util.test.junit.AutoCGCKnownFailedTests
Generate, compile and run inline code for a model.
runModelInline(String) - Method in class ptolemy.util.test.junit.AutoCGCTests
Generate, compile and run inline code for a model.
runModelInline(String) - Method in class ptolemy.util.test.junit.AutoCGJavaKnownFailedTests
Generate, compile and run inline code for a model.
runModelInline(String) - Method in class ptolemy.util.test.junit.AutoCGJavaTests
Generate, compile and run inline code for a model.
runModelInThread(CompositeActor) - Method in class org.kepler.ExecutionEngine
run a model in a new thread.
runModelLarge(String) - Method in class ptolemy.util.test.junit.AutoCGJavaKnownFailedTests
Generate, compile and run code as if the model was very large.
runModelLarge(String) - Method in class ptolemy.util.test.junit.AutoCGJavaTests
Generate, compile and run code as if the model was very large.
runModelNoInline(String) - Method in class ptolemy.util.test.junit.AutoCGCKnownFailedTests
Generate, compile and run non-inline code for a model.
runModelNoInline(String) - Method in class ptolemy.util.test.junit.AutoCGCNoInlineTests
Generate, compile and run non-inline code for a model.
runModelNoInline(String) - Method in class ptolemy.util.test.junit.AutoCGCTests
Generate, compile and run non-inline code for a model.
runModelNoInline(String) - Method in class ptolemy.util.test.junit.AutoCGFMIMAKnownFailedTests
Generate, compile and run non-inline code for a model.
runModelNoInline(String) - Method in class ptolemy.util.test.junit.AutoCGFMIMANoInlineTests
Generate, compile and run non-inline code for a model.
runModelNoInline(String) - Method in class ptolemy.util.test.junit.AutoCGJavaKnownFailedTests
Generate, compile and run non-inline code for a model.
runModelNoInline(String) - Method in class ptolemy.util.test.junit.AutoCGJavaTests
Generate, compile and run non-inline code for a model.
runModelNoInlineArduino(String) - Method in class ptolemy.util.test.junit.AutoCGCNoInlineArduinoTests
Generate, compile and run non-inline code for a model.
runModelNoInlineDuktape(String) - Method in class ptolemy.util.test.junit.AutoCGCNoInlineDuktapeTests
Generate, compile and run non-inline code for a model.
runModelNoInlineDuktape(String) - Method in class ptolemy.util.test.junit.AutoCGNoInlineAccessorTests
Generate, compile and run non-inline code for a model.
runModels() - Method in class ptolemy.actor.gui.ConfigurationApplication
Start the models running, each in a new thread, then return.
runModulation() - Method in class ptolemy.vergil.basic.layout.kieler.test.junit.KielerJUnitTest
Test the layout of the modulation model.
runModulation() - Method in class ptolemy.vergil.basic.test.junit.ExportImageJUnitTest
Test the layout facility by reading in a models, stripping out the graphical elements, laying out the models, comparing the new results with the known good results and then doing undo and redo.
runMonitor() - Method in class ptolemy.vergil.basic.layout.kieler.test.junit.KielerJUnitTestExtendedModels
Test the layout of the Monitor FSM Model.
RunnableExceptionCatcher - Class in ptolemy.util
A class (that implements the proxy design pattern) that encapsulates a runnable, catches the exception and will report the exception to the Ptolemy Message Handler.
RunnableExceptionCatcher(Runnable) - Constructor for class ptolemy.util.RunnableExceptionCatcher
Construct an instance that will wrap a runnable, catch its exceptions and report it to the Ptolemy Message Handler.
RunnableExecutionQueue - Class in org.kepler.util
A queue that executes Runnables.
RunnableExecutionQueue() - Constructor for class org.kepler.util.RunnableExecutionQueue
 
RunnableGraphController - Class in ptolemy.vergil.basic
A graph controller for models that can be executed.
RunnableGraphController() - Constructor for class ptolemy.vergil.basic.RunnableGraphController
Create a new controller.
RUNNING - Static variable in class org.kepler.monitor.MonitoredStatus.State
Value for a "running" state.
RunningMaximum - Class in ptolemy.actor.lib
Output the maximum value seen since the start of execution of the model.
RunningMaximum(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.RunningMaximum
Construct an actor with the specified container and name.
RunningMinimum - Class in ptolemy.actor.lib
Output the minimum value seen since the start of execution of the model.
RunningMinimum(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.RunningMinimum
Construct an actor with the specified container and name.
runODC - Variable in class org.kepler.dataproxy.datasource.opendap.OpendapDataSourceODC
 
runOnModification - Variable in class ptolemy.actor.lib.gui.SketchedSource
If true, then when the user edits the plot, if the manager is currently idle, then run the model.
runRouter() - Method in class ptolemy.vergil.basic.layout.kieler.test.junit.KielerJUnitTestExtendedModels
Test the layout of the Router model.
RunsHandler - Class in org.kepler.webview.server.handler
Handler to get information about workflow runs.
RunsHandler(WebViewServer) - Constructor for class org.kepler.webview.server.handler.RunsHandler
 
RunTableau - Class in ptolemy.actor.gui
A tableau that creates a new run control panel for a ptolemy model.
RunTableau(PtolemyEffigy, String) - Constructor for class ptolemy.actor.gui.RunTableau
Create a new run control panel for the model with the given effigy.
RunTableau.Factory - Class in ptolemy.actor.gui
A factory that creates run control panel tableaux for Ptolemy models.
RunTableau.RunFrame - Class in ptolemy.actor.gui
The frame that is created by an instance of RunTableau.
RunTableau.RunFrame.DebugMenuListener - Class in ptolemy.actor.gui
Listener for debug menu commands.
RunTableau.TopFactory - Class in ptolemy.actor.gui
A factory that creates run control panel tableaux for the model associated with a top-level effigy (one that has a file representation).
RunTclFile(String) - Method in class ptolemy.util.test.junit.TclTests
Run a tclFile.
runTest() - Method in class ptolemy.kernel.util.test.TestWorkspace4
 
runTest() - Method in class ptolemy.kernel.util.test.TestWorkspace5
 
runTest() - Method in class ptolemy.kernel.util.test.TestWorkspace6
 
runTest() - Method in class ptolemy.kernel.util.test.TestWorkspaceBase
Initialize and run the test.
runTime - Variable in class org.kepler.job.JobStatusInfo
 
RunTimeTypeCheckException(TypedIOPort, Token) - Constructor for exception ptolemy.actor.TypedIOPort.RunTimeTypeCheckException
Create an run-time type error exception.
runUntilDeadlockInOneIteration - Variable in class ptolemy.domains.ddf.kernel.DDFDirector
A parameter indicating whether one iteration consists of repeated basic iterations until deadlock.
RunWithFeedbackChkBoxAction - Class in org.kepler.gui
This class provides an action to turn on or off animating a workflow during execution.
RunWithFeedbackChkBoxAction(TableauFrame) - Constructor for class org.kepler.gui.RunWithFeedbackChkBoxAction
Constructor
RunWorkflowHandler - Class in org.kepler.webview.server.handler
Handler to execute workflows or apps.
RunWorkflowHandler(WebViewServer) - Constructor for class org.kepler.webview.server.handler.RunWorkflowHandler
 
runWorkflowLifecyclePerInput - Variable in class org.kepler.ddp.actor.pattern.SingleInputPatternActor
If true, the full lifecycle of the sub-workflow will be executed for each input.
rWriteConsole(Rengine, String, int) - Method in class org.ecoinformatics.seek.R.RConsole
Callback that is called when text is available from the R Engine and should be written to the console.
rWriteConsole(Rengine, String, int) - Method in class ptolemy.actor.lib.r.RConsole
Callback that is called when text is available from the R Engine and should be written to the console.

S

s - Variable in class ptolemy.actor.lib.colt.ColtHyperGeometric
coltLambda.
S_SINCE_EPOCH - Static variable in class org.kepler.date.CreateDate
Constant string for seconds since epoch.
saFilePath - Variable in class org.kepler.spark.mllib.SantaAnaDetect
Path to SA cluster ID file
salinityIO - Variable in class org.kepler.data.conversion.binary.EnsembleActor
 
SAME - Static variable in interface ptolemy.graph.CPO
One of the return values of compare, indicating that the two elements are the same.
SAME_JVM_STRING - Static variable in class org.kepler.ddp.director.DDPDirector
String for serverType parameter for running DDP Engine in the same JVM.
SAMPLE_RATE - Static variable in class ptolemy.media.javasound.LiveSoundEvent
The value indicates a sample rate change event.
SampleDelay - Class in ptolemy.domains.sdf.lib
This actor outputs a set of initial tokens during the initialize() method, and subsequently passes the input tokens to the output.
SampleDelay(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.SampleDelay
Construct an actor with the given container and name.
samplePeriod - Variable in class ptolemy.domains.continuous.lib.PeriodicSampler
The parameter for the sampling period.
samplePlot() - Method in class ptolemy.actor.gui.PlotTableauFrame
Create a sample plot.
samplePlot() - Method in class ptolemy.plot.Histogram
Create a sample plot.
samplePlot() - Method in class ptolemy.plot.Plot
Create a sample plot.
samplePlot() - Method in class ptolemy.plot.PlotBox
Do nothing in this base class.
samplePlot() - Method in interface ptolemy.plot.PlotBoxInterface
Do nothing in this base class.
samplePlot() - Method in class ptolemy.plot.PlotFrame
Create a sample plot.
samplePlot() - Method in interface ptolemy.plot.PlotInterface
Create a sample plot.
Sampler - Class in ptolemy.actor.lib
This actor generates discrete events by sampling the input signal whenever the trigger input is present.
Sampler(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Sampler
Construct an actor in the specified container with the specified name.
sampleRate - Variable in class ptolemy.media.Audio
The sampling rate.
SampleStringPort - Variable in class org.kepler.gis.display.ENMPCPVisualizer
Description of the Field
sampleWave(int, double, double, DoubleUnaryOperation) - Static method in class ptolemy.math.SignalProcessing
Return a new array that is filled with samples of a waveform of a specified length.
samprate - Variable in class org.ROADnet.OrbWaveformSink
The rate at which samples are being updated/entering in the packet
sanitizeName(String) - Static method in class ptolemy.util.StringUtilities
Sanitize a String so that it can be used as a Java identifier.
SantaAnaDetect - Class in org.kepler.spark.mllib
 
SantaAnaDetect(CompositeEntity, String) - Constructor for class org.kepler.spark.mllib.SantaAnaDetect
 
SantaAnaIdentify - Class in org.kepler.spark.mllib
 
SantaAnaIdentify(CompositeEntity, String) - Constructor for class org.kepler.spark.mllib.SantaAnaIdentify
 
SATURATE - Static variable in class ptolemy.math.Overflow
Singleton implementing Saturate overflow strategy.
SATURATE - Static variable in class ptolemy.math.Quantizer
Indicate that overflow should saturate.
save() - Method in class org.kepler.gui.AbstractDialogTab
Save the user-editable values associated with this tab.
save() - Method in class org.kepler.gui.DialogAnnotationsTab
Save the user-editable values associated with this tab
save() - Method in class org.kepler.gui.DialogGeneralTab
Save the user-editable values associated with this tab.
save() - Method in class org.kepler.gui.DialogParametersTab
Save the user-editable values associated with this tab.
save() - Method in class org.kepler.gui.DialogPortsTab
Save the user-editable values associated with this tab
save() - Method in class org.kepler.gui.DialogUnitsTab
Save the user-editable values associated with this tab
save(Vector<KeplerLSID>, KeplerLSID, TableauFrame) - Method in class org.kepler.kar.handlers.ActorMetadataKAREntryHandler
The save method for ActorMetadataKAREntryHandler is not used since Actors and Workflows are not dependent on anything else.
save(Vector<KeplerLSID>, KeplerLSID, TableauFrame) - Method in class org.kepler.kar.handlers.JARKAREntryHandler
 
save(Vector<KeplerLSID>, KeplerLSID, TableauFrame) - Method in class org.kepler.kar.handlers.ModuleTxtKAREntryHandler
Return an array of KAREntry objects that are to be saved for the given lsid.
save(Vector<KeplerLSID>, KeplerLSID, TableauFrame) - Method in class org.kepler.kar.handlers.ProvKAREntryHandler
Serialize a workflow execution to a KAR entry.
save(Vector<KeplerLSID>, KeplerLSID, TableauFrame) - Method in class org.kepler.kar.handlers.ReportInstanceKAREntryHandler
 
save(Vector<KeplerLSID>, KeplerLSID, TableauFrame) - Method in class org.kepler.kar.handlers.ReportLayoutKAREntryHandler
 
save(Vector<KeplerLSID>, KeplerLSID, TableauFrame) - Method in class org.kepler.kar.handlers.WorkflowRunEntryHandler
 
save(Vector<KeplerLSID>, KeplerLSID, TableauFrame) - Method in interface org.kepler.kar.KAREntryHandler
Return an array of KAREntry objects that are to be saved for the given lsids.
save() - Method in class org.kepler.objectmanager.data.db.QBEditor
For okay button
save() - Method in class ptolemy.actor.gui.PtolemyPreferences
Save the preference values in this instance to the user preferences file.
save_nosave - Variable in class org.ecoinformatics.seek.R.RExpression
This setting determines whether or not to save the R workspace when R is closed; set to '--save' if you need to retreive the workspace later in a workflow in another RExpression actor.
save_nosave - Variable in class ptolemy.actor.lib.r.RExpression
This setting determines whether or not to save the R workspace when R is closed; set to '--save' if you need to retreive the workspace later in a workflow in another RExpression actor.
SaveableModelActor - Class in org.kepler.spark.actor
A base class for Spark actors that save models.
SaveableModelActor(CompositeEntity, String) - Constructor for class org.kepler.spark.actor.SaveableModelActor
Create a new SaveableModelActor in a container with a specific name.
SaveArchiveAction - Class in org.kepler.gui.kar
This action attempts to save a KAR in place without user interaction using ExportArchiveAction.
SaveArchiveAction(TableauFrame) - Constructor for class org.kepler.gui.kar.SaveArchiveAction
Constructor
saveBackground() - Method in class ptolemy.gui.JFileChooserBugFix
Set the background to the value of the ToolBar.shadow property and return the previous background.
saveCatalog() - Method in class org.kepler.sms.OntologyCatalog
Save out catalog to catalog filename
saveCatalog(Vector<OntologyRow>) - Method in class org.kepler.sms.OntologyCatalog
 
saveComponentInLibrary(Configuration, Entity) - Static method in class ptolemy.actor.gui.UserActorLibrary
Save the given entity in the user library in the given configuration.
saveComponentInLibrary(Configuration, Entity) - Static method in class ptolemy.vergil.basic.BasicGraphFrame
saveConfiguration() - Method in class org.kepler.configuration.ConfigurationManager
serialize the entire configuration
saveDataToFile - Variable in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Parameter specifying if the data and event traces should be saved in a separated file.
saveDebugState(boolean) - Method in class org.mlc.swing.layout.UserPrefs
Save the current state of the panel - debug on/off.
saveFile(String, String, String) - Method in class org.ecoinformatics.seek.querybuilder.QBApp
Saves Query to a file
saveIfRequired() - Method in class ptolemy.actor.gui.PortConfigurerDialog
 
saveIfRequired() - Method in class ptolemy.actor.gui.PtolemyDialog
If necessary save any state.
saveJarURLAsTempFile(String, String, String, File) - Static method in class ptolemy.actor.gui.JNLPUtilities
Given a jar URL, read in the resource and save it as a file.
saveJarURLInClassPath(String) - Static method in class ptolemy.actor.gui.JNLPUtilities
Given a jar URL, read in the resource and save it as a file in a similar directory in the classpath if possible.
SaveKAR - Class in org.kepler.kar
This is a gui independent class to be used for saving a KAR file to disk and to remote repositories.
SaveKAR() - Constructor for class org.kepler.kar.SaveKAR
 
SaveListener - Class in org.kepler.configuration
A listener that saves the configuration when changes are made
SaveListener() - Constructor for class org.kepler.configuration.SaveListener
 
saveQueryFile() - Method in class org.ecoinformatics.seek.querybuilder.QBApp
Saves Query to a file
saveRecordingTypes(String, String) - Method in class org.kepler.provenance.ProvenanceRecorder
Save the recording types to a specific properties file.
saveRefinementsInConfigurer - Variable in class ptolemy.domains.modal.kernel.State
A boolean attribute to decide refinements of this state should be exported as configurations of this state or not.
saveSchemaFile() - Method in class org.ecoinformatics.seek.querybuilder.QBApp
Saves Query to a file
saveSucceeded() - Method in class org.kepler.gui.kar.ExportArchiveAction
 
saveTag(NamedOntClass, boolean) - Method in class org.kepler.tagging.gui.ExistingTagsPanel
 
saveToCache() - Method in class org.kepler.kar.SaveKAR
Save this KAR file to the cache only if it is being saved to disk in a local repository.
saveToCache(String, String, String) - Static method in class org.sdm.spa.Util
Save into Caching File It will be stored at file p1_p2;
saveToDisk(TableauFrame, String) - Method in class org.kepler.kar.SaveKAR
Save this KAR file to disk.
saveWinLoc(String, Window) - Method in class org.mlc.swing.layout.UserPrefs
Save a window's size and position data under the provided name.
saWindowThrs - Variable in class org.kepler.spark.mllib.SantaAnaDetect
Fraction threshold for the sliding window filter
saWindowWidth - Variable in class org.kepler.spark.mllib.SantaAnaDetect
Width of the sliding window filter
sawtooth(double, double, double) - Static method in class ptolemy.math.SignalProcessing
Return a sample of a sawtooth wave with the specified period and phase at the specified time.
SawtoothSampleGenerator(double, double) - Constructor for class ptolemy.math.SignalProcessing.SawtoothSampleGenerator
Construct a SawtoothSampleGenerator with the given period and phase.
SAXDriver - Class in com.microstar.xml.driver
A SAX driver for Microstar's Ælfred XML parser.
SAXDriver() - Constructor for class com.microstar.xml.driver.SAXDriver
 
SCALAR - Static variable in class ptolemy.data.type.BaseType
The scalar data type: The least upper bound of all the scalar types.
ScalarToken - Class in ptolemy.data
Abstract base class for tokens that contain a scalar.
ScalarToken() - Constructor for class ptolemy.data.ScalarToken
 
scale - Variable in class org.kepler.gis.actor.bbox.ScaleBoundingBox
The amount to scale the bounding box by.
scale - Variable in class ptolemy.actor.lib.ArrayLevelCrossing
An indicator of whether threshold should be interpreted as absolute or relative, and if relative, then on a linear scale, in amplitude decibels, or power decibels.
scale - Variable in class ptolemy.actor.lib.ArrayPeakSearch
An indicator of whether dip and squelch should be interpreted as absolute or relative, and if relative, then on a linear scale, in amplitude decibels, or power decibels.
scale(Image, int) - Static method in class ptolemy.actor.lib.image.Transform
Scale an image so that its maximum dimension is no larger than the maximumDimension parameter.
Scale - Class in ptolemy.actor.lib
Produce an output token on each firing with a value that is equal to a scaled version of the input.
Scale(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Scale
Construct an actor with the given container and name.
scale(double) - Method in class ptolemy.math.Complex
Return a new complex number with value equal to the product of this complex number and the real argument.
scale(Complex[], Complex) - Static method in class ptolemy.math.ComplexArrayMath
Return a new array that is constructed from the argument by scaling each element in array by factor, which is a complex number.
scale(Complex[], double) - Static method in class ptolemy.math.ComplexArrayMath
Return a new array that is constructed from the argument by scaling each element in the array by factor, which is a double.
scale(double[], double) - Static method in class ptolemy.math.DoubleArrayMath
Return a new array of doubles produced by scaling the input array elements by scaleFactor.
scale(float[], float) - Static method in class ptolemy.math.FloatArrayMath
Return a new array of floats produced by scaling the input array elements by scaleFactor.
scale(int[], int) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array of ints produced by scaling the input array elements by scaleFactor.
scale(long[], long) - Static method in class ptolemy.math.LongArrayMath
Return a new array of longs produced by scaling the input array elements by scaleFactor.
scale - Variable in class ptolemy.vergil.kernel.attributes.ImageAttribute
The scale, as a percentage.
scale - Variable in class ptolemy.vergil.pdfrenderer.PDFAttribute
The scale, as a percentage.
ScaleBoundingBox - Class in org.kepler.gis.actor.bbox
Scale the bounding box for a GIS data set.
ScaleBoundingBox(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.bbox.ScaleBoundingBox
 
scaleFactor - Variable in class ptolemy.actor.lib.SynchronizeToRealTime
How many seconds in wallclock time should pass for a single second in model time.
scaleFactorParameter - Variable in class org.ecoinformatics.seek.gis.java_gis.GISHullActorJ
This is the scale factor for an AffineTransformation of the shape created by the ConvexHull.
scaleImage(double) - Method in class ptolemy.vergil.icon.ImageIcon
Specify a scaling for the image as a percentage.
scaleOnLeft - Variable in class ptolemy.actor.lib.Scale
Multiply on the left.
scanReposForKarFiles() - Method in class org.kepler.objectmanager.cache.LocalRepositoryManager
Search for Kar files in local Kar Repositories and build a list of all the KAR files that are found.
sccDecomposition() - Method in class ptolemy.graph.DirectedGraph
Compute the strongly connected component (SCC) decomposition of a graph.
Schedule - Class in org.kepler.workflowscheduler.gui
A class represents a schedule object.
Schedule() - Constructor for class org.kepler.workflowscheduler.gui.Schedule
 
schedule - Variable in class org.kepler.workflowscheduler.gui.SchedulerAbstractAction
 
schedule(Time) - Method in interface ptolemy.actor.ActorExecutionAspect
Perform rescheduling actions when no new actor requests to be scheduled.
schedule(NamedObj, Time, Time, Time) - Method in interface ptolemy.actor.ActorExecutionAspect
Schedule the actor.
schedule(ActorExecutionAspect, NamedObj, Time, Time) - Static method in class ptolemy.actor.ExecutionAspectHelper
Schedule an actor for execution on an aspect and return the next time this aspect has to perform an action.
Schedule - Class in ptolemy.actor.sched
This class represents a static schedule of actor executions.
Schedule() - Constructor for class ptolemy.actor.sched.Schedule
Construct a schedule with iteration count of one and an empty schedule list.
Schedule - Class in ptolemy.graph.sched
This class represents a static schedule of firing elements invocation.
Schedule() - Constructor for class ptolemy.graph.sched.Schedule
Construct a schedule with iteration count of one and an empty schedule list.
Schedule(Class) - Constructor for class ptolemy.graph.sched.Schedule
Construct a schedule with iteration count of one and an empty schedule list.
schedule() - Method in class ptolemy.graph.sched.ScheduleAnalysis
Return the schedule computed by the associated analyzer.
schedule() - Method in interface ptolemy.graph.sched.ScheduleAnalyzer
Return the schedule computed by the associated analyzer.
ScheduleAnalysis - Class in ptolemy.graph.sched
An analysis for schedules on graphs.
ScheduleAnalysis(ScheduleAnalyzer) - Constructor for class ptolemy.graph.sched.ScheduleAnalysis
Construct an instance of this class with the given analyzer.
ScheduleAnalyzer - Interface in ptolemy.graph.sched
An interface for all the scheduling strategies on graphs.
ScheduleChangeController - Class in org.kepler.workflowscheduler.gui
A controller controls the relationship between schedule change and presentation(listener) change
ScheduleChangeController() - Constructor for class org.kepler.workflowscheduler.gui.ScheduleChangeController
 
scheduleChangeController - Variable in class org.kepler.workflowscheduler.gui.SchedulerAbstractAction
 
ScheduleChangeController.NonSelectableTreeSelectionModel - Class in org.kepler.workflowscheduler.gui
A non-selectable tree selection model but allow first selection
ScheduleChangeListenerInterface - Interface in org.kepler.workflowscheduler.gui
 
scheduleContainedActors() - Method in class ptolemy.actor.Director
Return true if the next actor in the model governed by this director can be scheduled.
ScheduleElement - Class in ptolemy.actor.sched
This is an abstract base class for a schedule element.
ScheduleElement() - Constructor for class ptolemy.actor.sched.ScheduleElement
Construct a schedule element with an iteration count of 1 and with no parent schedule element.
ScheduleElement - Class in ptolemy.graph.sched
This is an abstract base class for a schedule element.
ScheduleElement() - Constructor for class ptolemy.graph.sched.ScheduleElement
Construct a schedule element with an iteration count of 1 and with no parent schedule element.
ScheduleElement(Class) - Constructor for class ptolemy.graph.sched.ScheduleElement
Construct a schedule element with an iteration count of 1 and with no parent schedule element.
scheduler - Variable in class org.kepler.actor.job.GenericJobLauncher
The name of the jobmanager to be used It should be a name, for which a supporter class exist as org.kepler.job.JobSupport.class This parameter is read each time in fire().
scheduler - Variable in class org.kepler.actor.job.GenericJobReconnect
The name of the jobmanager to be used It should be a name, for which a supporter class exist as org.kepler.job.JobSupport.class This parameter is read each time in fire().
SCHEDULER - Static variable in class org.kepler.module.workflowschedulergui.Initialize
 
SCHEDULER - Static variable in class org.kepler.workflowscheduler.gui.SchedulerAbstractAction
 
Scheduler - Class in ptolemy.actor.sched
The base class for schedulers.
Scheduler() - Constructor for class ptolemy.actor.sched.Scheduler
Construct a scheduler with no container(director) in the default workspace, the name of the scheduler is "Scheduler".
Scheduler(Workspace) - Constructor for class ptolemy.actor.sched.Scheduler
Construct a scheduler in the given workspace with the name "Scheduler".
Scheduler(Director, String) - Constructor for class ptolemy.actor.sched.Scheduler
Construct a scheduler in the given container with the given name.
SchedulerAbstractAction - Class in org.kepler.workflowscheduler.gui
Represent an abstract actions which operates a workflow scheduler server.
SchedulerAbstractAction(TableauFrame, WorkflowSchedulerParentPanel, ScheduleChangeController) - Constructor for class org.kepler.workflowscheduler.gui.SchedulerAbstractAction
Constructor
schedulerParentPanel - Variable in class org.kepler.workflowscheduler.gui.SchedulerAbstractAction
 
schedulerURL - Variable in class org.kepler.workflowscheduler.gui.SchedulerAbstractAction
 
ScheduleTableModel - Class in org.kepler.workflowscheduler.gui
Data model for display the schedule table
ScheduleTableModel(Schedule[]) - Constructor for class org.kepler.workflowscheduler.gui.ScheduleTableModel
Constructor
ScheduleWorkflowAction - Class in org.kepler.workflowscheduler.gui
An action class to perform scheduling a workflow.
ScheduleWorkflowAction(TableauFrame, WorkflowSchedulerParentPanel, ScheduleChangeController) - Constructor for class org.kepler.workflowscheduler.gui.ScheduleWorkflowAction
Constructor
Schema - Class in org.kepler.util.sql
A generic representation of an SQL schema.
Schema(int) - Constructor for class org.kepler.util.sql.Schema
Construct a new schema.
schemaDef - Variable in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource
Schema definition for the entities in this package.
Schemas - Class in org.kepler.provenance.sql
A class to create the provenance schemas.
SchematicContextMenuFactory(GraphController) - Constructor for class ptolemy.vergil.basic.BasicGraphController.SchematicContextMenuFactory
Create a new context menu factory associated with the specified controller.
ScopeExtender - Interface in ptolemy.kernel.util
An interface for attributes that extend their container's scope.
ScopeExtendingAttribute - Class in ptolemy.data.expr
An attribute that extends its container's scope.
ScopeExtendingAttribute(NamedObj, String) - Constructor for class ptolemy.data.expr.ScopeExtendingAttribute
Construct an attribute with the given name contained by the specified entity.
Scp - Class in org.geon
FIXME THIS ACTOR SHARES DUPLICATE CODE WITH Ssh2Exec.
Scp(CompositeEntity, String) - Constructor for class org.geon.Scp
Construct an SCP actor with the given container and name.
Scp.MyUserInfo - Class in org.geon
 
scp_invoke_string - Variable in class org.eol.WmsdActor
 
scp_server - Variable in class org.eol.WmsdActor
 
scp_user - Variable in class org.eol.WmsdActor
 
ScpCopier - Class in org.sdm.spa.actors.transport
Copies files using SCP protocol.
ScpCopier() - Constructor for class org.sdm.spa.actors.transport.ScpCopier
 
Scrambler - Class in ptolemy.actor.lib.comm
Scramble the input bit sequence using a feedback shift register.
Scrambler(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.comm.Scrambler
Construct an actor with the given container and name.
Screenshot - Class in org.kepler.loader.util
A class to automate taking screenshots of Kepler workflows.
script - Variable in class org.kepler.gis.actor.calc.JiffleRasterCalculator
The jiffle script.
script - Variable in class org.kepler.scriptengine.ScriptEngineActor
The contents of the script.
script - Variable in class ptolemy.actor.lib.python.PythonScript
The script that specifies the function of this actor.
Script - Class in ptolemy.vergil.basic.export.web
A parameter for associating a script (such as Javascript) with an object in a model.
Script(NamedObj, String) - Constructor for class ptolemy.vergil.basic.export.web.Script
Create an instance of this parameter.
script - Variable in class ptolemy.vergil.basic.export.web.Script
Script to insert in the head section of the web page.
ScriptEngineActor - Class in org.kepler.scriptengine
An actor whose execution is specified by a script.
ScriptEngineActor(Workspace) - Constructor for class org.kepler.scriptengine.ScriptEngineActor
Construct a new ScriptEngineActor for a specified workspace.
ScriptEngineActor(CompositeEntity, String) - Constructor for class org.kepler.scriptengine.ScriptEngineActor
Construct a new ScriptEngineActor with the given container and name.
ScriptEngineMapStub - Class in org.kepler.spark.stub
A Spark Map stub that executes a ScriptEngine.
ScriptEngineMapStub() - Constructor for class org.kepler.spark.stub.ScriptEngineMapStub
 
ScriptEngineMapStub - Class in org.kepler.stratosphere.stub
A Stratosphere Map stub that executes a ScriptEngine.
ScriptEngineMapStub() - Constructor for class org.kepler.stratosphere.stub.ScriptEngineMapStub
 
ScriptEnginePairFlatMapFunction<T,K,V> - Class in org.kepler.spark.stub
A Spark stub base class for executing a ScriptEngine.
ScriptEnginePairFlatMapFunction() - Constructor for class org.kepler.spark.stub.ScriptEnginePairFlatMapFunction
 
ScriptEngineReduceStub - Class in org.kepler.spark.stub
A Spark Reduce stub that executes a ScriptEngine.
ScriptEngineReduceStub() - Constructor for class org.kepler.spark.stub.ScriptEngineReduceStub
 
ScriptEngineReduceStub - Class in org.kepler.stratosphere.stub
A Stratosphere Reduce stub that executes a ScriptEngine.
ScriptEngineReduceStub() - Constructor for class org.kepler.stratosphere.stub.ScriptEngineReduceStub
 
ScrollbarAdjustmentListener - Class in org.kepler.reporting.gui
 
ScrollbarAdjustmentListener() - Constructor for class org.kepler.reporting.gui.ScrollbarAdjustmentListener
 
ScrollBarListener(JScrollBar) - Constructor for class org.kepler.gui.KeplerGraphFrame.ScrollBarListener
constructor
ScrollBarModifier - Class in org.kepler.gui
class to tell vergil whether scrollbars should be included in the canvas pane.
ScrollBarModifier() - Constructor for class org.kepler.gui.ScrollBarModifier
 
ScrollBarModifier.Factory - Class in org.kepler.gui
A factory that creates the library panel for the editors.
scrollToEnd() - Method in class ptolemy.actor.gui.TextEditor
Scroll as necessary so that the last line is visible.
SDF4WS - Class in org.kepler.domains
The SDF4WS is an SDFDirector for the domain of WebServices.
SDF4WS() - Constructor for class org.kepler.domains.SDF4WS
Construct a director in the default workspace with an empty string as its name.
SDF4WS(Workspace) - Constructor for class org.kepler.domains.SDF4WS
Construct a director in the workspace with an empty name.
SDF4WS(CompositeEntity, String) - Constructor for class org.kepler.domains.SDF4WS
Construct a director in the given container with the given name.
SDFConverter - Class in ptolemy.domains.sdf.lib
This actor is a base class for SDF converters.
SDFConverter(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.SDFConverter
Construct an actor with the given container and name.
SDFDirector - Class in ptolemy.domains.sdf.kernel
Director for the synchronous dataflow (SDF) model of computation.
SDFDirector() - Constructor for class ptolemy.domains.sdf.kernel.SDFDirector
Construct a director in the default workspace with an empty string as its name.
SDFDirector(Workspace) - Constructor for class ptolemy.domains.sdf.kernel.SDFDirector
Construct a director in the workspace with an empty name.
SDFDirector(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.kernel.SDFDirector
Construct a director in the given container with the given name.
SDFIOPort - Class in ptolemy.domains.sdf.kernel
Deprecated.
It is preferable to declare the rate parameters directly in the actors, instead of using this class. This allows the dependence of rates to be understood by various SDF schedulers.
SDFIOPort() - Constructor for class ptolemy.domains.sdf.kernel.SDFIOPort
Deprecated.
Construct an SDFIOPort with no container and no name that is neither an input nor an output.
SDFIOPort(Workspace) - Constructor for class ptolemy.domains.sdf.kernel.SDFIOPort
Deprecated.
Construct a port in the specified workspace with an empty string as a name.
SDFIOPort(ComponentEntity, String) - Constructor for class ptolemy.domains.sdf.kernel.SDFIOPort
Deprecated.
Construct an SDFIOPort with a containing actor and a name that is neither an input nor an output.
SDFIOPort(ComponentEntity, String, boolean, boolean) - Constructor for class ptolemy.domains.sdf.kernel.SDFIOPort
Deprecated.
Construct an SDFIOPort with a container and a name that is either an input, an output, or both, depending on the third and fourth arguments.
SDFReceiver - Class in ptolemy.domains.sdf.kernel
A first-in, first-out (FIFO) queue receiver with variable capacity and optional history.
SDFReceiver() - Constructor for class ptolemy.domains.sdf.kernel.SDFReceiver
Construct an empty receiver with no container.
SDFReceiver(int) - Constructor for class ptolemy.domains.sdf.kernel.SDFReceiver
Construct an empty receiver with no container and given size.
SDFReceiver(IOPort) - Constructor for class ptolemy.domains.sdf.kernel.SDFReceiver
Construct an empty receiver with the specified container.
SDFReceiver(IOPort, int) - Constructor for class ptolemy.domains.sdf.kernel.SDFReceiver
Construct an empty receiver with the specified container and size.
SDFScheduler - Class in ptolemy.domains.sdf.kernel
A scheduler that implements basic scheduling of SDF graphs.
SDFScheduler() - Constructor for class ptolemy.domains.sdf.kernel.SDFScheduler
Construct a scheduler with no container(director) in the default workspace, the name of the scheduler is "Scheduler".
SDFScheduler(Workspace) - Constructor for class ptolemy.domains.sdf.kernel.SDFScheduler
Construct a scheduler in the given workspace with the name "Scheduler".
SDFScheduler(Director, String) - Constructor for class ptolemy.domains.sdf.kernel.SDFScheduler
Construct a scheduler in the given container with the given name.
SDFTestConsumer - Class in ptolemy.domains.sdf.kernel.test
This actor will consume all tokens on its input port and write their values to a string.
SDFTestConsumer(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.kernel.test.SDFTestConsumer
 
SDFTestDelay - Class in ptolemy.domains.sdf.kernel.test
This actor copies one token from its input to its output when fired.
SDFTestDelay(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.kernel.test.SDFTestDelay
Create an SDFTestDelay actor in the given container with the given name.
SDFTestJoin - Class in ptolemy.domains.sdf.kernel.test
A deterministic merge of two token streams.
SDFTestJoin(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.kernel.test.SDFTestJoin
 
SDFTestRamp - Class in ptolemy.domains.sdf.kernel.test
Create an increasing sequence of integer tokens, starting with value zero, and incrementing by one.
SDFTestRamp(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.kernel.test.SDFTestRamp
 
SDFTestScheduler - Class in ptolemy.actor.lib.string.test
A scheduler that exposes the rate variable of SDFScheduler.
SDFTestScheduler() - Constructor for class ptolemy.actor.lib.string.test.SDFTestScheduler
Construct a scheduler with no container(director) in the default workspace, the name of the scheduler is "Scheduler".
SDFTestScheduler(Workspace) - Constructor for class ptolemy.actor.lib.string.test.SDFTestScheduler
Construct a scheduler in the given workspace with the name "Scheduler".
SDFTestScheduler(Director, String) - Constructor for class ptolemy.actor.lib.string.test.SDFTestScheduler
Construct a scheduler in the given container with the given name.
SDFTestSplit - Class in ptolemy.domains.sdf.kernel.test
This actor deterministically splits its input token stream into two streams.
SDFTestSplit(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.kernel.test.SDFTestSplit
 
SDFTestZeroRate1 - Class in ptolemy.domains.sdf.kernel.test
A test actor for HDF/SDF.
SDFTestZeroRate1(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.kernel.test.SDFTestZeroRate1
Construct an actor with the given container and name.
SDFTestZeroRate2 - Class in ptolemy.domains.sdf.kernel.test
A test actor for HDF.
SDFTestZeroRate2(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.kernel.test.SDFTestZeroRate2
Construct an actor with the given container and name.
SDFTransformer - Class in ptolemy.domains.sdf.lib
This is an abstract base class for actors that transform an input stream into an output stream.
SDFTransformer(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.SDFTransformer
Construct an actor with the given container and name.
search(String) - Method in class org.ecoinformatics.seek.ecogrid.SemRegIndex
search default case.
search(String, boolean) - Method in class org.ecoinformatics.seek.ecogrid.SemRegIndex
search A simple search implementation that finds actors in the index (identified via their paths) that instantiate the classname.
search(String) - Method in class org.ecoinformatics.seek.sms.AnnotationEngine
search default case
search(String, boolean) - Method in class org.ecoinformatics.seek.sms.AnnotationEngine
 
search(String, boolean) - Method in class org.kepler.gui.LibrarySearcher
search for value in the library
search(String, boolean) - Method in class org.kepler.gui.OntLibrarySearcher
Deprecated.
Search for ontology-keyword in the library
search(String, boolean) - Method in interface org.kepler.gui.RepositorySearcher
 
search(String, boolean) - Method in class org.kepler.gui.SimpleLibrarySearcher
search for val in the library
search(String) - Method in class org.kepler.gui.WorkflowOutlinePanel
Display the subset of the workflow for entities containing the given term.
search(String) - Method in class org.kepler.objectmanager.library.LibSearch
Search all search string types in the index for a specific string.
search(String, int) - Method in class org.kepler.objectmanager.library.LibSearch
Search a specific search string type in the index for the given value.
search(String, Vector<Integer>) - Method in class org.kepler.objectmanager.library.LibSearch
Return all LIID values that match the given string and search types.
search(String, boolean) - Method in class org.kepler.objectmanager.repository.EcogridRepository
Search the repository and return an iterator of EcogridRepositoryResults.
search(String, boolean) - Method in class org.kepler.objectmanager.repository.EcogridRepositoryLibrarySearcher
search for value in the library
search(String, boolean) - Method in class org.kepler.objectmanager.repository.Repository
Search the repository and return an iterator of results (the Iterator contains KeplerLSIDs of matched items).
search - Variable in class ptolemy.actor.lib.test.SearchTest
The Point (Lat,Long) the user selected from the map
SEARCH_BUTTON_CAPTION - Static variable in class org.kepler.gui.SearchUIJPanel
 
SearchButtonActionHandler() - Constructor for class org.kepler.gui.ComponentLibraryTab.SearchButtonActionHandler
 
searchClasspath(String) - Method in class org.kepler.objectmanager.ActorMetadata
search the classpath for a specific class and return the file.
SearchConfigurationFrame - Class in org.kepler.gui.component
 
SearchConfigurationFrame(String) - Constructor for class org.kepler.gui.component.SearchConfigurationFrame
Constructor accepts a title for the frame.
SEARCHDATA_ATTR - Static variable in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreDataSource
 
searchDomainList(String) - Method in class org.kepler.authentication.DomainList
Search the domain list for a specific domain. return the domain if it's found, if not, return null;
SearchEntityLibrary - Class in org.kepler.moml
A convenience class to determine the different types of EntityLibraries in the trees for assigning icons.
SearchEntityLibrary() - Constructor for class org.kepler.moml.SearchEntityLibrary
 
SearchEntityLibrary(Workspace) - Constructor for class org.kepler.moml.SearchEntityLibrary
 
SearchEntityLibrary(CompositeEntity, String) - Constructor for class org.kepler.moml.SearchEntityLibrary
 
searchFor - Variable in class ptolemy.actor.lib.string.StringIndexOf
Port and parameter specifying a string to find in the inText string.
searchForClass(String, String) - Method in class ptolemy.moml.MoMLParser
Given the name of a MoML class and a source URL, check to see whether this class has already been instantiated, and if so, return the previous instance.
searchForwards - Variable in class ptolemy.actor.lib.string.StringIndexOf
Boolean parameter indicating the direction in which to search.
searchOutput - Variable in class ptolemy.actor.lib.test.LoopTest2
 
searchProxyInRepository(String, Domain) - Method in class org.kepler.authentication.ProxyRepository
This function is used to search proxy with the specified user name and domain.
searchProxyInRepository(Domain) - Method in class org.kepler.authentication.ProxyRepository
This function is used to search proxy with the specified domain.
SearchQuery - Class in org.ecoinformatics.seek.ecogrid.quicksearch
A class to implement a query object that looks like this: <query> <queryId>eml210-quick-search-query</queryId> <system>http://knb.ecoinformatics.org</system> <namespace> <prefix>eml</prefix> <value>eml://ecoinformatics.org/eml-2.1.0</value> </namespace> <returnField>dataset/title</returnField> <returnField>entityName</returnField> <title>eml210-quick-search-query</title> <AND> <OR> <condition> <concept>dataset/title</concept> <operator>LIKE</operator> <value>#value#</value> </condition> <condition> <concept>keyword</concept> <operator>LIKE</operator> <value>#value#</value> </condition> <condition> <concept>creator/individualName/surName</concept> <operator>LIKE</operator> <value>#value#</value> </condition> <condition> <concept>taxonRankValue</concept> <operator>LIKE</operator> <value>#value#</value> </condition> <condition> <concept>abstract/para</concept> <operator>LIKE</operator> <value>#value#</value> </condition> </OR> <OR> <condition> <concept>dataset/dataTable/physical/distribution/online/url</concept> <operator>LIKE</operator> <value>http://%</value> </condition> <condition> <concept>dataset/dataTable/physical/distribution/online/url</concept> <operator>LIKE</operator> <value>ecogrid://%</value> </condition> <condition> <concept>dataset/spatialRaster/physical/distribution/online/url</concept> <operator>LIKE</operator> <value>ecogrid://%</value> </condition> </OR> <OR> <condition> <concept>dataset/dataTable/physical/distribution/online/url/@function</concept> <operator>EQUALS</operator> <value>download</value> </condition> <condition> <concept>dataset/spatialRaster/physical/distribution/online/url/@function</concept> <operator>EQUALS</operator> <value>download</value> </condition> </OR> </AND> </query>
SearchQuery(ConfigurationProperty) - Constructor for class org.ecoinformatics.seek.ecogrid.quicksearch.SearchQuery
constructor
SearchQueryGenerator - Class in org.ecoinformatics.seek.ecogrid.quicksearch
This class will read kepler configure file and get the query part from it base on search name space.
SearchQueryGenerator(String, Hashtable) - Constructor for class org.ecoinformatics.seek.ecogrid.quicksearch.SearchQueryGenerator
Constructor of SearchQueryGenerator
searchRadius - Variable in class org.geon.Interpolate
The search space
SearchRegistryAction - Class in org.ecoinformatics.seek.ecogrid
Class will search the registry
SearchRegistryAction(String, RegistrySearchDialog, EcogridPreferencesTab, Point) - Constructor for class org.ecoinformatics.seek.ecogrid.SearchRegistryAction
Constructor
SearchRegistryResultFrame - Class in org.ecoinformatics.seek.ecogrid
This class represents a frame for service list modification
SearchRegistryResultFrame(EcogridPreferencesTab) - Constructor for class org.ecoinformatics.seek.ecogrid.SearchRegistryResultFrame
Constructor for the frame
SEARCHREPOS - Static variable in class org.kepler.gui.SearchUIJPanel
 
SearchResultsDialog - Class in ptolemy.vergil.basic
This class is a non-modal dialog for displaying search results.
SearchResultsDialog(DialogTableau, Frame, Entity, Configuration) - Constructor for class ptolemy.vergil.basic.SearchResultsDialog
Construct a dialog for search results.
SearchResultsDialog(String, DialogTableau, Frame, Entity, Configuration) - Constructor for class ptolemy.vergil.basic.SearchResultsDialog
Construct a dialog for search results.
SearchScheduleSwingWorker - Class in org.kepler.workflowscheduler.gui
This class represents a worker to search existing schedules from remote server in a in a dedicated thread.
SearchScheduleSwingWorker(ScheduleChangeController, String, String, Lock) - Constructor for class org.kepler.workflowscheduler.gui.SearchScheduleSwingWorker
Constructor
SearchSchedulesWorkerListenerInterface - Interface in org.kepler.workflowscheduler.gui
A listener class to handle the action that a worker searches a scheduler server.
SearchTest - Class in ptolemy.actor.lib.test
Name: SearchTest.java Purpose: The purpose of this actor is to prove that we can use it's output as input for the Loop Actor input : String "Search #Loop Number" output : "No Data" or "Results Found"
SearchTest(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.test.SearchTest
 
SearchUIJPanel - Class in org.kepler.gui
Class to build the Search User Interface JPanel that allows the user to enter a single search term to search by. 5 buttons can be optionally configured by setting Actions for those buttons.
SearchUIJPanel() - Constructor for class org.kepler.gui.SearchUIJPanel
Empty constructor.
SearchUIJPanel(String, Action, Action, Action, Action, Action) - Constructor for class org.kepler.gui.SearchUIJPanel
Constructor - creates a panel with a titled border (from String param panelBorderTitle), containing a textfield with up to 5 buttons beneath it.
sec() - Method in class ptolemy.math.Complex
Return a new complex number with value equal to the secant of this complex number.
sec(Complex) - Static method in class ptolemy.math.Complex
Return a new complex number with value equal to the secant of the given complex number.
second - Variable in class ptolemy.actor.lib.DateConstructor
The seconds.
second - Variable in class ptolemy.actor.lib.DateElements
Second of date received on input.
second() - Method in class ptolemy.domains.modal.kernel.ia.StatePair
Return the second state in this pair.
SECONDARYKEY - Static variable in interface org.kepler.objectmanager.data.db.DSTableKeyIFace
Indicates a Secondary Key
secondOperand - Variable in class ptolemy.actor.lib.MathFunction
Deprecated.
The port for the second operand, if it is needed.
secondString - Variable in class ptolemy.actor.lib.string.StringCompare
The input PortParameter for the second string of type string.
SECTION - Static variable in class org.kepler.reporting.rio.StaticReportItemSection
 
SectionHeaderDocumentListener() - Constructor for class org.kepler.reporting.gui.ReportDesignerPanel.SectionHeaderDocumentListener
 
SectionHeaderListener() - Constructor for class org.kepler.reporting.gui.ReportDesignerPanel.SectionHeaderListener
 
sections - Variable in class org.kepler.reporting.roml.ReportLayout
 
SectionTextReporting - Class in org.kepler.reporting.gui
 
SectionTextReporting() - Constructor for class org.kepler.reporting.gui.SectionTextReporting
 
seed - Variable in class org.kepler.spark.mllib.KMeansClustering
The random seed value to use for cluster initialization .
seed - Variable in class org.kepler.spark.mllib.KMeansModel
The random seed value to use for cluster initialization .
seed - Variable in class ptolemy.actor.lib.RandomSource
The seed that controls the random number generation.
seed - Variable in class ptolemy.domains.modal.kernel.FSMActor
The seed to be used for random token generation, to evaluate probabilistic transitions between states.
SELECT - Static variable in class org.ecoinformatics.seek.dataquery.DBTablesGenerator
 
select - Variable in class ptolemy.actor.lib.BooleanMultiplexor
Input that selects one of the other input ports.
select - Variable in class ptolemy.actor.lib.Multiplexor
Input for the index of the port to select.
Select - Class in ptolemy.actor.lib
A polymorphic select, which routes specified input channels to the output.
Select(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Select
Construct an actor in the specified container with the specified name.
SelectableDocumentType - Class in org.ecoinformatics.seek.ecogrid
This class represents a selected document type
SelectableDocumentType(String, String, boolean) - Constructor for class org.ecoinformatics.seek.ecogrid.SelectableDocumentType
Default constructor
SelectableDocumentType(DocumentType, boolean) - Constructor for class org.ecoinformatics.seek.ecogrid.SelectableDocumentType
Copy constructor
SelectableEcoGridService - Class in org.ecoinformatics.seek.ecogrid
This class extends from EcoGridService, it contains selected status from user interface
SelectableEcoGridService() - Constructor for class org.ecoinformatics.seek.ecogrid.SelectableEcoGridService
Default constructor and inits selected service name and document type array
SelectableEcoGridService(EcoGridService) - Constructor for class org.ecoinformatics.seek.ecogrid.SelectableEcoGridService
Copy Constructor, copy a EcoGridService and inited selected service name and selected document type array
SelectableObjectInterface - Interface in org.ecoinformatics.seek.ecogrid
This interface represents a selected object
SelectableServiceName - Class in org.ecoinformatics.seek.ecogrid
This class represents a selected service name in table
SelectableServiceName() - Constructor for class org.ecoinformatics.seek.ecogrid.SelectableServiceName
Default constructor
selectAll() - Method in class org.sdm.spa.actors.piw.viz.SiteCollection
 
selected - Variable in class org.kepler.reporting.gui.LabelPanel
 
SELECTED_ICON - Static variable in class org.kepler.tagging.gui.ToolbarUtilities
This key is used in an action to specify a selected icon used in toolbars.
selectedA - Variable in class ptolemy.actor.lib.OrderedMerge
Output port indicating whether the output token came from inputA.
selectedEntity - Variable in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource
If this EML package has mutiple entities, this parameter specifies which entity should be used for output.
selectInputSetMethods - Variable in class org.sdm.spa.SoaplabChooseOperation
The standard "set_<name>" method choices for SoaplabServices
SELECTION - Static variable in class org.ecoinformatics.seek.ecogrid.MetadataSpecificationInterface
Description of the field
selectionChanged(SelectionEvent) - Method in class ptolemy.vergil.unit.UnitSolverDialog
 
selectJobManager(String, String, String) - Method in class org.kepler.job.JobManager
Choose a jobmanager for execution jobmanager can be which is supported at that time: Condor target is either "localhost" or "user@host" is the machine where the jobmanager is running is the full path to the jobmanager commands on that machine, or "" or null if they are in the default path if "'jobmanager'Support" class cannot be instantiated, a JobException is thrown
selectLink(MouseEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBTableJoin
Uses the mouse event to select or deselect a link
selectNonSchedulalbeItem() - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerParentPanel
Action for selecting a non remote workflow on component search panel
selector - Variable in class ptolemy.actor.lib.ConfigurationSelect
Parameter that selects one of the two input ports.
selector - Variable in class ptolemy.actor.lib.ConfigurationSwitch
PortParameter that selects one of the two input ports.
selectOutputGetMethod - Variable in class org.sdm.spa.SoaplabChooseResultType
The "get_<name>" method for the soaplab webservice
selectPanel() - Method in class org.kepler.reporting.gui.DragAndDropPanel
selects the drag and drop panel in the default manner by the source which originated it.
selectRemoteWorkflow(String, String, String, String, boolean) - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerParentPanel
Action for selecting a remote workflow on component search panel
selectReposFromDB() - Method in class org.kepler.objectmanager.cache.LocalRepositoryManager
 
SelfLoopAnalysis - Class in ptolemy.graph.analysis
Computation of self-loops in a graph.
SelfLoopAnalysis(Graph) - Constructor for class ptolemy.graph.analysis.SelfLoopAnalysis
Construct an instance of this class for a given graph.
SelfLoopAnalysis(SelfLoopAnalyzer) - Constructor for class ptolemy.graph.analysis.SelfLoopAnalysis
Construct an instance of this class with a given analyzer.
SelfLoopAnalyzer - Interface in ptolemy.graph.analysis.analyzer
Base interface for the computation of self-loops in a graph.
selfLoopEdgeCount(Node) - Method in class ptolemy.graph.DirectedGraph
Return the number of self loop edges of a specified node.
selfLoopEdgeCount() - Method in class ptolemy.graph.Graph
Return the number of self loop edges in this graph.
selfLoopEdgeCount(Node) - Method in class ptolemy.graph.Graph
Return the number of self loop edges of a specified node.
selfLoopEdges() - Method in class ptolemy.graph.Graph
Return the collection of all self-loop edges in this graph.
selfLoopEdges(Node) - Method in class ptolemy.graph.Graph
Return the collection of all self-loop edges that are incident to a specified node.
SelfLoopStrategy - Class in ptolemy.graph.analysis.strategy
Computation of self-loops in a graph.
SelfLoopStrategy(Graph) - Constructor for class ptolemy.graph.analysis.strategy.SelfLoopStrategy
Construct an instance of this strategy for a given graph.
SemanticLinkTable - Class in org.kepler.sms.gui
 
SemanticLinkTable(Frame) - Constructor for class org.kepler.sms.gui.SemanticLinkTable
This is the default constructor
SemanticProperty - Class in org.kepler.sms
A data structure to hold a semantic property in a MoML file.
SemanticProperty() - Constructor for class org.kepler.sms.SemanticProperty
Constructor
SemanticProperty(NamedObj, String) - Constructor for class org.kepler.sms.SemanticProperty
Constructor
SemanticProperty(Workspace) - Constructor for class org.kepler.sms.SemanticProperty
Constructor
SemanticSearchDialog - Class in org.kepler.sms.gui
 
SemanticSearchDialog(Frame, NamedObj) - Constructor for class org.kepler.sms.gui.SemanticSearchDialog
This is the default constructor
SemanticSearchDialogAction - Class in org.kepler.gui
An action that will create a SemanticSearchDialog.
SemanticSearchDialogAction() - Constructor for class org.kepler.gui.SemanticSearchDialogAction
An action that will create a SemanticSearchDialog.
SemanticSearchDialogAction(TableauFrame) - Constructor for class org.kepler.gui.SemanticSearchDialogAction
Constructor
SemanticType - Class in org.kepler.sms
This is a subtype of StringParameter.
SemanticType() - Constructor for class org.kepler.sms.SemanticType
 
SemanticType(NamedObj, String) - Constructor for class org.kepler.sms.SemanticType
Constructor for the SemanticTypeParam object
SemanticTypeBrowserDialog - Class in org.kepler.sms.gui
This class encapsulates the simple browser for browsing and selecting ontology classes.
SemanticTypeBrowserDialog(Frame, boolean) - Constructor for class org.kepler.sms.gui.SemanticTypeBrowserDialog
This is the default constructor
SemanticTypeBrowserDialog(Frame) - Constructor for class org.kepler.sms.gui.SemanticTypeBrowserDialog
This is the default constructor
SemanticTypeBrowserPane - Class in org.kepler.sms.gui
This ui is meant as a generic tool to navigate owl ontologies within Kepler.
SemanticTypeBrowserPane(Container, boolean) - Constructor for class org.kepler.sms.gui.SemanticTypeBrowserPane
create a new semantic type browser panel if classView is true, then forces only the class tab, and if false, forces only the property tab.
SemanticTypeBrowserPane(Container) - Constructor for class org.kepler.sms.gui.SemanticTypeBrowserPane
create a new semantic type browser panel
SemanticTypeBrowserSelectionEvent - Class in org.kepler.sms.gui
 
SemanticTypeBrowserSelectionEvent(Object, NamedOntClass) - Constructor for class org.kepler.sms.gui.SemanticTypeBrowserSelectionEvent
creates a new event
SemanticTypeBrowserSelectionListener - Interface in org.kepler.sms.gui
 
SemanticTypeDefinition - Class in org.kepler.sms
A data structure to hold a semantic type given in a kar file.
SemanticTypeDefinition() - Constructor for class org.kepler.sms.SemanticTypeDefinition
Constructor
SemanticTypeDefinition(NamedObj, String) - Constructor for class org.kepler.sms.SemanticTypeDefinition
Constructor
SemanticTypeDefinition(Workspace) - Constructor for class org.kepler.sms.SemanticTypeDefinition
Constructor
SemanticTypeEditor - Class in org.kepler.sms.gui
SemanticTypeEditor is a dialog for adding and removing semantic types to particular workflow components.
SemanticTypeEditor(Frame, NamedObj) - Constructor for class org.kepler.sms.gui.SemanticTypeEditor
This is the default constructor
SemanticTypeManager - Class in org.kepler.sms
 
SemanticTypeManager() - Constructor for class org.kepler.sms.SemanticTypeManager
 
SemanticTypeManagerMemento - Class in org.kepler.sms
 
SemanticTypeManagerMemento(SemanticTypeManager) - Constructor for class org.kepler.sms.SemanticTypeManagerMemento
Default constructor
SemanticTypeTable - Class in org.kepler.sms.gui
SemanticTypeEditor is a dialog for adding and removing semantic types to particular workflow components.
SemanticTypeTable(Frame, boolean) - Constructor for class org.kepler.sms.gui.SemanticTypeTable
This is the default constructor
SemanticTypeTable(Frame) - Constructor for class org.kepler.sms.gui.SemanticTypeTable
This is the default constructor
semaphore - Static variable in class ptolemy.matlab.Engine
Used for synchronization.
SEMICOLON - Static variable in class org.ecoinformatics.seek.dataquery.DBTablesGenerator
 
SEMICOLON - Static variable in interface ptolemy.moml.unit.UParserConstants
RegularExpression Id.
SemRegIndex - Class in org.ecoinformatics.seek.ecogrid
Description of the Class
SemRegIndex() - Constructor for class org.ecoinformatics.seek.ecogrid.SemRegIndex
Constructor
send(int, Token) - Method in class ptolemy.actor.ConstantPublisherPort
Override the base class to replace the specified token with the value of constantValue.
send(int, Token[], int) - Method in class ptolemy.actor.ConstantPublisherPort
Override the base class to replace the specified tokens with the value of constantValue.
send(int, Token) - Method in class ptolemy.actor.IOPort
Send the specified token to all receivers connected to the specified channel.
send(int, Token[], int) - Method in class ptolemy.actor.IOPort
Send the specified portion of a token array to all receivers connected to the specified channel.
SEND - Static variable in class ptolemy.actor.IOPortEvent
Deprecated.
Use SEND_BEGIN or SEND_END instead.
send(int, Token) - Method in class ptolemy.actor.TypedIOPort
Send a token to the specified channel, checking the type and converting the token if necessary.
send(int, Token[], int) - Method in class ptolemy.actor.TypedIOPort
Send the specified portion of a token array to all receivers connected to the specified channel, checking the type and converting the token if necessary.
SEND_BEGIN - Static variable in class ptolemy.actor.IOPortEvent
An event corresponding with the beginning of a token being sent.
SEND_END - Static variable in class ptolemy.actor.IOPortEvent
An event corresponding with the ending of a token being sent.
sendAllChanges - Variable in class org.kepler.actor.job.JobStatus
Parameter to set if you want job status to ignore waitUntil parameter and send out every status change
sendClear(int) - Method in class ptolemy.actor.IOPort
Set all destination receivers connected via the specified to channel to have no token.
sendClearInside(int) - Method in class ptolemy.actor.IOPort
Set all destination receivers connected on the inside via the specified to channel to have no token.
sendData(JsonObject, NamedObj) - Static method in class org.kepler.webview.server.WebViewableUtilities
 
sendEmail(String, String[], String[], String[], String, String) - Method in class org.geon.LidarUtilities
 
sendEmpty - Variable in class org.kepler.actor.io.SshDirectoryList_v1_1
Specifying whether an empty ArrayToken should be emitted if nothing is found.
sendEvent(WebViewableUtilities.Event, NamedObj) - Static method in class org.kepler.webview.server.WebViewableUtilities
 
sendEvent(WebViewableUtilities.Event, NamedObj, Date) - Static method in class org.kepler.webview.server.WebViewableUtilities
 
sendEvent(WebViewableUtilities.Event, NamedObj, String) - Static method in class org.kepler.webview.server.WebViewableUtilities
 
sendIdToConnections(IOPort, int, Id) - Method in class org.kepler.provenance.PortConnector
Send an Id to an output port's connections on a channel.
sendInside(int, Token) - Method in class ptolemy.actor.IOPort
Send the specified token to all receivers connected to the specified inside channel of this port.
sendInside(int, Token) - Method in class ptolemy.actor.lib.hoc.IterateOverArray.IteratePort
Override the base class to convert the token to the element type rather than to the type of the port.
sendInside(int, Token) - Method in class ptolemy.actor.TypedIOPort
Send the specified token to all receivers connected to the specified inside channel of this port, checking the type and converting the token if necessary.
sendLabelValuesToModel(Item, String, String) - Method in class org.kepler.reporting.gui.DynamicReportItemPanel
 
sendOptions(NamedObj, String) - Static method in class org.kepler.webview.server.WebViewableUtilities
 
sendOutputIfTriggered(int) - Method in class ptolemy.domains.de.lib.MostRecent
Send output tokens if any input on the trigger port has a token.
sendSchemaToConnected() - Method in class org.geon.OpenDBConnection
Returns the database schema.
sendTitle(String, NamedObj) - Static method in class org.kepler.webview.server.WebViewableUtilities
 
sendToken(Object) - Method in class org.ecoinformatics.seek.util.DoubleFieldChooser
sends the token. this can be overwritten to send different types of tokens besides strings.
sendToken(Object) - Method in class org.ecoinformatics.seek.util.FieldChooser
sends the token. this can be overwritten to send different types of tokens besides strings.
sendToken(Object) - Method in class org.ecoinformatics.seek.util.IntegerFieldChooser
sends the token. this can be overwritten to send different types of tokens besides strings.
sendToken(Receiver, Receiver, Token) - Method in interface ptolemy.actor.CommunicationAspect
Take the specified token and mediate communication to the specified receiver.
sep - Variable in class org.kepler.spark.mllib.ExtractColumns
string column separator.
SEPARATE_METADATA_PORT - Static variable in class org.kepler.dataproxy.datasource.opendap.OpendapDataSource
 
separateMetadataPortName - Static variable in class org.kepler.dataproxy.datasource.opendap.OpendapDataSource
 
separator - Static variable in class org.kepler.objectmanager.lsid.KeplerLSID
 
separator - Variable in class org.resurgence.actor.ArrayToString
The parameter, which specifies the element separator.
separator - Variable in class org.resurgence.actor.StringAccumulator
The parameter, which specifies the substring separator.
separator - Variable in class org.resurgence.actor.StringSplitter
The parameter, which specifies the regular expression.
Separator - Class in ptolemy.actor.gui.properties
A GUI property that encloses a JSeparator component.
Separator(NamedObj, String) - Constructor for class ptolemy.actor.gui.properties.Separator
Construct a GUI property with the given name contained by the specified entity.
Separator(NamedObj, String, JComponent) - Constructor for class ptolemy.actor.gui.properties.Separator
Construct a GUI property with the given name contained by the specified entity with the given Java Swing component.
Separator(NamedObj, String, JComponent, Object) - Constructor for class ptolemy.actor.gui.properties.Separator
Construct a GUI property with the given name contained by the specified entity with the given Java Swing component and the given layout constraint.
Separator(NamedObj, String, Object) - Constructor for class ptolemy.actor.gui.properties.Separator
Construct a GUI property with the given name contained by the specified entity with the given layout constraint.
separator - Variable in class ptolemy.actor.lib.io.CSVReader
A specification of the separator between items in the table.
separator - Variable in class ptolemy.actor.lib.io.CSVWriter
A specification of the separator between items in the table.
separator - Variable in class ptolemy.actor.lib.string.StringSplit
A specification of the separator used to split the string.
SEPARATOR - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
SeparatorCBItem() - Constructor for class org.kepler.tagging.gui.CBItems.SeparatorCBItem
 
separatorChar - Static variable in class org.kepler.objectmanager.lsid.KeplerLSID
 
SeparatorComponentBuilder - Class in org.mlc.swing.layout
This is the component builder for the JGoodies Separator.
SeparatorComponentBuilder() - Constructor for class org.mlc.swing.layout.SeparatorComponentBuilder
Creates a new instance of SeparatorComponentBuilder
SEQ_SIZE_PER_EXE - Static variable in class org.kepler.bio.stratosphere.input.FASTAInputFormatBySize
The configuration key to set the sequence data size (unite: MB).
Sequence - Class in org.sdm.spa.actors.piw.viz
 
Sequence(String, String, String, TranscriptionFactorBindingSite[]) - Constructor for class org.sdm.spa.actors.piw.viz.Sequence
Construct an instance with offset 0.
Sequence(String, String, String, TranscriptionFactorBindingSite[], int) - Constructor for class org.sdm.spa.actors.piw.viz.Sequence
Construct an instance.
Sequence - Class in ptolemy.actor.lib
This actor produces a sequence of values, optionally periodically repeating them.
Sequence(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Sequence
Construct an actor in the specified container with the specified name.
SEQUENCE_NUM - Static variable in class org.kepler.bio.stratosphere.input.FASTAInputFormat
The configuration key to set the sequence number.
SequenceActor - Interface in ptolemy.actor.lib
This is a marker interface for actors that operate on sequences.
SequenceCollection - Class in org.sdm.spa.actors.piw.viz
 
SequenceCollection(Sequence[]) - Constructor for class org.sdm.spa.actors.piw.viz.SequenceCollection
 
sequenceLength - Variable in class org.ecoinformatics.seek.util.SequenceToTrigger
The size of the output array.
sequenceNumber - Variable in class ptolemy.actor.CommunicationAspectAttributes
The sequenceNumber indicates the order in which communication aspects are used.
sequenceNumber - Variable in class ptolemy.actor.lib.Sequencer
Input for the sequence number.
SequencePlotter - Class in ptolemy.actor.lib.gui
A sequence plotter.
SequencePlotter(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.gui.SequencePlotter
Construct an actor with the given container and name.
Sequencer - Class in ptolemy.actor.lib
This actor takes a sequence of inputs tagged with a sequence number and produces them on the output port in the order given by the sequence number.
Sequencer(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Sequencer
Construct an actor in the specified container with the specified name.
SequenceScope - Class in ptolemy.actor.lib.gui
A sequence plotter for sequences that are potentially infinitely long.
SequenceScope(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.gui.SequenceScope
Construct an actor with the given container and name.
SequenceSource - Class in ptolemy.actor.lib
Base class for sequence sources.
SequenceSource(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.SequenceSource
Construct an actor with the given container and name.
SequenceToArray - Class in ptolemy.domains.sdf.lib
This actor bundles a specified number of input tokens into a single array and broadcasts the resulting array on all output channels.
SequenceToArray(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.SequenceToArray
Construct an actor with the given container and name.
SequenceToMatrix - Class in ptolemy.domains.sdf.lib
This actor bundles a specified number of input tokens into a matrix.
SequenceToMatrix(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.SequenceToMatrix
Construct an actor with the given container and name.
SequenceToTrigger - Class in org.ecoinformatics.seek.util
This actor bundles a specified number of input tokens into a single array.
SequenceToTrigger(CompositeEntity, String) - Constructor for class org.ecoinformatics.seek.util.SequenceToTrigger
Construct an actor with the given container and name.
SequentialClock - Class in ptolemy.actor.lib
Deprecated.
Use Clock instead.
SequentialClock(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.SequentialClock
Deprecated.
Construct an actor with the specified container and name.
serializeActor(Actor) - Method in interface org.kepler.provenance.StateSerializer
Serialize the state of an actor.
serializeData - Variable in class org.ecoinformatics.seek.R.RExpression2
If true, then daata frames (and other complexe data objects will be transferred by serialization to disk.
serializeData - Variable in class ptolemy.actor.lib.r.RExpression2
If true, then daata frames (and other complexe data objects will be transferred by serialization to disk.
SerializeDeepCopy - Class in org.kepler.reporting.rio.util
From: http://javatechniques.com/blog/faster-deep-copies-of-java-objects/ Utility for making deep copies (vs. clone()'s shallow copies) of objects.
SerializeDeepCopy() - Constructor for class org.kepler.reporting.rio.util.SerializeDeepCopy
 
serializeToDisk() - Method in class org.kepler.objectmanager.library.LibSearchConfiguration
 
Server - Class in ptolemy.domains.de.lib
This actor models a preemptive server with a fixed or variable service time.
Server(CompositeEntity, String) - Constructor for class ptolemy.domains.de.lib.Server
Construct an actor with the specified container and name.
serverAddress - Variable in class org.kepler.data.datasource.dataturbine.DataTurbineWriter
The hostname and port of the server.
ServerExecute - Class in org.geon
Invoke the execution method of ModelService (Temporary until deployment).
ServerExecute(CompositeEntity, String) - Constructor for class org.geon.ServerExecute
Construct an actor with the given container and name.
serverName - Variable in class org.kepler.spark.actor.SparkConnection
The host name of the Spark server.
ServerTimeZoneIDParser - Class in org.kepler.workflowscheduler.gui
A parser which parses the result xml from remote scheduler server to get available time zone ids.
ServerTimeZoneIDParser() - Constructor for class org.kepler.workflowscheduler.gui.ServerTimeZoneIDParser
Constructor
SERVICE - Static variable in class org.ecoinformatics.seek.ecogrid.MetadataSpecificationInterface
Description of the Field
SERVICECLASSIFICATION - Static variable in class org.ecoinformatics.seek.ecogrid.MetadataSpecificationInterface
 
SERVICEGROUP - Static variable in class org.ecoinformatics.seek.ecogrid.MetadataSpecificationInterface
field for service clustering/authentication
SERVICENAME - Static variable in class org.ecoinformatics.seek.ecogrid.MetadataSpecificationInterface
Description of the Field
SERVICENAME - Static variable in class org.ecoinformatics.seek.ecogrid.RegistrySearchDialog
 
SERVICENAMECOL - Static variable in class org.ecoinformatics.seek.ecogrid.ServicesDisplayPanel
 
SERVICENAMEXPATH - Static variable in class org.ecoinformatics.seek.ecogrid.RegistrySearchDialog
 
ServicesDisplayPanel - Class in org.ecoinformatics.seek.ecogrid
This class will represents a panel which will display services
ServicesDisplayPanel(Vector) - Constructor for class org.ecoinformatics.seek.ecogrid.ServicesDisplayPanel
Constructor of ServicesDisplayPane
ServicesDisplayTableModel - Class in org.ecoinformatics.seek.ecogrid
This class will represent a table model for displaying service list
ServicesDisplayTableModel(Vector, String[]) - Constructor for class org.ecoinformatics.seek.ecogrid.ServicesDisplayTableModel
Constructor for the table model
serviceSiteURL - Variable in class org.camera.service.CAMERARESTService
The REST service URL.
serviceSiteURL - Variable in class org.kepler.actor.rest.RESTService
The REST service URL.
SERVICESLIST - Static variable in class org.ecoinformatics.seek.ecogrid.MetadataSpecificationInterface
Description of the Field
ServicesListModificationPanel - Class in org.ecoinformatics.seek.ecogrid
 
ServicesListModificationPanel() - Constructor for class org.ecoinformatics.seek.ecogrid.ServicesListModificationPanel
 
ServicesListModificationPanel.Factory - Class in org.ecoinformatics.seek.ecogrid
A factory that creates the ServicesListModification panel for the PreferencesFrame.
ServicesRefreshAction - Class in org.ecoinformatics.seek.ecogrid
This method will look up the services from the registry and save the service list to configuration file
ServicesRefreshAction(String, EcogridPreferencesTab) - Constructor for class org.ecoinformatics.seek.ecogrid.ServicesRefreshAction
Constructor
serviceTime - Variable in class ptolemy.domains.de.lib.Server
The service time.
SERVICETYPE - Static variable in class org.ecoinformatics.seek.ecogrid.MetadataSpecificationInterface
Description of the Field
serviceURL - Variable in class org.kepler.authentication.AuthenticationService
 
ServiceUtils - Class in org.camera.service
ServiceUtils is a utility class.
ServiceUtils() - Constructor for class org.camera.service.ServiceUtils
 
ServiceUtils - Class in org.kepler.actor.rest
ServiceUtils is a utility class.
ServiceUtils() - Constructor for class org.kepler.actor.rest.ServiceUtils
 
session - Variable in class org.kepler.ssh.SshExec
 
session - Variable in class org.sdm.spa.actors.transport.ScpCopier
 
SESSION_CLOSED - Static variable in class org.kepler.ssh.SshEvent
 
SESSION_OPENED - Static variable in class org.kepler.ssh.SshEvent
 
sessionid - Variable in class org.kepler.objectmanager.repository.EcogridRepository.RegistryClientContainer
 
set(DSSchemaIFace, DBQueryDef) - Method in class org.ecoinformatics.seek.querybuilder.QBApp
Loads a Schema and a Query into the Builder
set(Boolean) - Method in class org.kepler.gui.component.ShowFolders
Set whether or not folders should be shown in the Component Tab.
set(boolean) - Method in class org.kepler.gui.component.ShowFolders
Set whether or not folders should be shown in the Component Tab.
set(V) - Method in class org.ptolemy.commons.FutureValue
Sets the result of this Future to the given value unless this future has already been set or has been cancelled.
set(int, Object) - Method in class ptolemy.graph.LabeledList
Unsupported optional method of the List interface.
set(String, String) - Method in class ptolemy.gui.Query
Set the value in the entry with the given name.
setAboutMethod(Top, Method) - Static method in class ptolemy.gui.MacOSXAdapter
Set the about menu handler for a Top window.
setAbsoluteFileName(String) - Method in class org.kepler.objectmanager.cache.DataCacheObject
 
setAction(String, String) - Method in class org.kepler.CommandLineArgument
Set the class and method to invoke if this argument is seen on the command line.
setActions - Variable in class ptolemy.domains.modal.kernel.Transition
The action commands that set parameters when the transition is taken.
setActive(boolean) - Method in class org.kepler.plotting.DataTable
 
setActive(boolean) - Method in class org.kepler.plotting.GraphLabelsPanel
 
setActive(boolean) - Method in class org.kepler.plotting.PlotEditor
 
setActive(boolean) - Method in class org.kepler.plotting.TableButtonPanel
 
setActive(boolean) - Method in class ptolemy.actor.process.Branch
Set a flag indicating this branch is no longer active.
setActive(boolean) - Method in class ptolemy.actor.process.BranchController
Set this branch controller active if the active parameter is true; set this branch controller to inactive otherwise.
setActiveCount(int) - Method in class ptolemy.actor.gui.ConfigurationApplication
Set the number of active models.
setActor(SingleInputPatternActor) - Method in class org.kepler.hadoop.util.DDPPatternActorUtil
 
setActor(NamedObj) - Method in class org.kepler.objectmanager.ActorMetadata
 
setActor(Actor) - Method in class ptolemy.actor.sched.Firing
Set the actor associated with this firing.
setActorLibraryWorkspace(Workspace) - Method in class org.kepler.objectmanager.library.LibraryManager
Set the workspace for the actor library and regenerate
setActorSemanticTypes(NamedObj, Vector<NamedOntClass>) - Static method in class org.kepler.sms.SMSServices
Set given NamedObj's SemanticTypes to namedOntClasses
setActorString(String) - Method in class org.kepler.moml.KeplerActorMetadata
 
setAdaptive(boolean) - Method in class ptolemy.actor.util.CalendarQueue
Enable or disable changing the number of bins (or buckets) in the queue.
setAddTimestamp(boolean) - Method in class org.kepler.provenance.TextFileRecording
Set if the output should have a timestamp.
setAdvancedAction(Action) - Method in class org.kepler.gui.SearchUIJPanel
Sets the Action to be used when the Advanced button is pressed.
setAlgAtts(String, String, String, String) - Method in class org.geon.LidarJobConfig
 
setAlignment(CellConstraints.Alignment, CellConstraints.Alignment) - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Sets the horizontal and vertical alignment.
setAlignmentLength(int) - Method in class org.kepler.bio.util.BlastTabularResult
 
setAllSearchEnabled(boolean) - Method in class org.kepler.gui.SearchUIJPanel
Enables/disables _all_ Search buttons we will use this to disable all buttons as we fetch datasources from the repository if enabled==true, enable the textfield, search, reset, source and advanced buttons, and cancel button.
setAnchor(String) - Method in class org.kepler.objectmanager.lsid.KeplerLSID
 
setAnchor(int) - Method in class ptolemy.vergil.icon.TextIcon
Specify origin of the text.
setAndNotify(String, String) - Method in class ptolemy.gui.Query
Set the value in the entry with the given name and notify listeners.
setAnimationDelay(long) - Method in class ptolemy.vergil.basic.BasicGraphController
Set the time delay for animation.
setAnnotation(String) - Method in class org.kepler.util.WorkflowRunBuilder
 
setAnnotationObjectVisible(NamedObj) - Method in class org.kepler.sms.gui.SemanticTypeTable
Causes the given object to become visible in the given display.
setArchiveFile(File) - Method in class org.kepler.gui.kar.ImportModuleDependenciesAction
Explicitly set the Archive file for this dependency broken KAR file.
setArchiveFileToDelete(File) - Method in class org.kepler.gui.kar.DeleteArchiveAction
Explicitly set the Archive file that the action will open.
setArchiveFileToOpen(File) - Method in class org.kepler.gui.kar.OpenArchiveAction
Explicitly set the Archive file that the action will open.
setArchiveFileToOpen(File) - Method in class org.kepler.gui.kar.ViewManifestAction
Explicitly set the Archive file that the action will open.
setArchiveFileToUpload(File) - Method in class org.kepler.gui.kar.KarUploaderAction
Explicitly set the Archive file that the action will open.
setArgument(Parameter, String) - Static method in class org.kepler.ddp.actor.ExecutionChoice
Set the command line argument for a parameter.
setArraysWrapped(boolean) - Method in class org.sdm.spa.XMLHelper
Set the value of _arraysWrappedVal.
setAsDefault() - Method in class ptolemy.actor.gui.PtolemyPreferences
Set the values in this instance of PtolemyPreferences to be the default values by creating entries in the Constants class so that these values are accessible to any expression.
setAssociatedComponent(Component) - Method in class org.kepler.reporting.gui.DragAndDropPanel
 
setAssociatedItem(Item) - Method in class org.kepler.reporting.gui.DeleteItemButton
 
setAssociatedItem(Item) - Method in class org.kepler.reporting.gui.DragAndDropPanel
setAssociatedItem - important method that associates a report Item with a specific DragAndDropPanel.
setAssociatedItem(Item) - Method in class org.kepler.reporting.gui.LabelPanel
 
setAssociatedItem(Item) - Method in class org.kepler.reporting.gui.SectionTextReporting
 
setAssociatedItem(Item) - Method in class org.kepler.reporting.gui.TextAreaReporting
 
setAssociatedPanel(DragAndDropPanel) - Method in class org.kepler.reporting.gui.DeleteItemButton
 
setAssociatedPanel(DragAndDropPanel) - Method in class org.kepler.reporting.gui.ReportItemButton
 
setAssociatedPanel(DragAndDropPanel) - Method in class org.kepler.reporting.gui.SectionTextReporting
 
setAssociatedPanel(DragAndDropPanel) - Method in class org.kepler.reporting.gui.TextAreaReporting
 
setAssociatedPort(MirrorPort) - Method in class ptolemy.actor.lib.hoc.MirrorPort
Specify an associated port.
setAssociatedPort(ParameterMirrorPort) - Method in class ptolemy.actor.parameters.ParameterMirrorPort
Specify an associated port.
setAttribute(String, String) - Method in class ptolemy.vergil.toolbox.GraphicElement
Set the attribute with the given name to the given value.
setAttributeList(AttributeList) - Method in class org.kepler.objectmanager.data.db.Entity
Method to set attribute list
setAttributes(Vector) - Method in class org.kepler.objectmanager.data.db.AttributeList
 
setAuthenticationListener(AuthenticationListener) - Method in class org.kepler.authentication.AuthenticationManager
Set the authentication listener
setAuthenticationListener(AuthenticationListener) - Method in class org.kepler.authentication.AuthenticationService
Set the authentication listener
setAuthor(String) - Method in class ptolemy.vergil.basic.KeplerDocumentationAttribute
Set the author.
setAuthProvider(AuthProvider) - Method in class org.kepler.webview.server.auth.DrupalUser
 
setAuthProvider(AuthProvider) - Method in class org.kepler.webview.server.auth.NoneUser
Do nothing.
setAutoCommit(boolean) - Method in class org.kepler.util.sql.DatabaseType
Turn on or off auto commit for the database connection.
setAutomaticRescale(boolean) - Method in class ptolemy.plot.PlotBox
Set automatic rescale.
setAutomaticRescale(boolean) - Method in interface ptolemy.plot.PlotBoxInterface
Set automatic rescale.
setAutomaticTypeConversion(boolean) - Method in class ptolemy.actor.TypedIOPort
Allow actors to disable automatic type conversion on their input ports in case they do not need it.
setAuxVariables(int, double) - Method in class ptolemy.domains.continuous.kernel.ContinuousIntegrator
Set the value of an auxiliary variable.
setAverageCharacterWidthTestString(String) - Method in class com.jgoodies.forms.util.DefaultUnitConverter
Sets a string that will be used to compute the average character width.
setBackground(Color) - Method in class org.kepler.provenance.gui.DisabledGlassPane
 
setBackground(Color) - Method in class ptolemy.actor.gui.ModelFrame
Set background color.
setBackground(Color) - Method in class ptolemy.actor.gui.TextEditor
Set background color.
setBackground(Color) - Method in class ptolemy.actor.lib.gui.SliderSource
Set the background color of the panel that contains the slider.
setBackground(Color) - Method in class ptolemy.actor.lib.image.ImageDisplay
Set the background.
setBackground(Color) - Method in interface ptolemy.actor.lib.image.ImageDisplayInterface
Set the background.
setBackground(Color) - Method in class ptolemy.actor.lib.image.ImageDisplayJavaSE
Set the background.
setBackground(Color) - Method in class ptolemy.domains.de.lib.EventButton
Deprecated.
Set the background color.
setBackground(Color) - Method in class ptolemy.gui.Query
Set the background color for all the widgets.
setBackground(Color) - Method in class ptolemy.gui.StatusBar
Set the background color.
setBackground(Color) - Method in class ptolemy.gui.Top
Set background color.
setBackground(Color) - Method in class ptolemy.plot.PlotBox
Set the background color.
setBackground(Object) - Method in class ptolemy.plot.PlotBox
Set the background color.
setBackground(Object) - Method in interface ptolemy.plot.PlotBoxInterface
Set the background color.
setBackgroundColor(Color) - Method in class org.kepler.monitor.figure.ProgressBarFigure
 
setBackgroundColor(Color) - Method in class org.kepler.monitor.MonitorIcon
 
setBars(double, double) - Method in class ptolemy.plot.Histogram
Set the width and offset of the bars.
setBars(boolean) - Method in class ptolemy.plot.Plot
Turn bars on or off (for bar charts).
setBars(double, double) - Method in class ptolemy.plot.Plot
Turn bars on and set the width and offset.
setBars(boolean) - Method in interface ptolemy.plot.PlotInterface
Turn bars on or off (for bar charts).
setBars(double, double) - Method in interface ptolemy.plot.PlotInterface
Turn bars on and set the width and offset.
setBase(URL) - Method in class ptolemy.actor.gui.HTMLViewer
Set the base URL for relative accesses.
setBase64data(String) - Method in class org.kepler.reporting.rio.ItemValue
 
setBaseDirectory(URI) - Method in class ptolemy.actor.parameters.FilePortParameter
Set the directory to use as the base for relative file or URL names.
setBaseDirectory(URI) - Method in class ptolemy.data.expr.FileParameter
Set the directory to use as the base for relative file or URL names.
setBaseDirectory(URI) - Method in class ptolemy.kernel.attributes.FileAttribute
Deprecated.
Set the directory to use as the base for relative file or URL names.
setBaseDirectory(URI) - Method in interface ptolemy.kernel.attributes.FileOrURLAccessor
Set the directory to use as the base for relative file or URL names.
setBaseFileName(String) - Method in class org.kepler.objectmanager.cache.DataCacheObject
 
setBasicActorLibrary(EntityTreeModel) - Method in class org.ecoinformatics.seek.sms.KeplerLocalLSIDService
Assigns the current kepler actor library.
setBendpoints(double[]) - Method in class ptolemy.vergil.actor.LayoutHint.LayoutHintItem
Set a new list of bend points and update the current validation information such as the current location of head and tail and their port widths.
setBinFile(String, boolean) - Method in class org.kepler.job.Job
Set file to be staged to bin path.
setBinOffset(double) - Method in class ptolemy.plot.Histogram
Set the offset of the bins, in whatever units the data are given.
setBinWidth(Object[]) - Method in interface ptolemy.actor.util.CQComparator
Given an array of entries, set an appropriate bin width for a calendar queue to hold these entries.
setBinWidth(Object[]) - Method in class ptolemy.actor.util.test.DoubleCQComparator
Given an array of Double objects, find the appropriate bin width.
setBinWidth(Object[]) - Method in class ptolemy.actor.util.TimedEvent.TimeComparator
Given an array of TimedEvent objects, find the appropriate bin width.
setBinWidth(double) - Method in class ptolemy.plot.Histogram
Set the width of the bins, in whatever units the data are given.
setBitScore(float) - Method in class org.kepler.bio.util.BlastTabularResult
 
setBitsPerSample(int) - Static method in class ptolemy.media.javasound.LiveSound
Set the number of bits per sample to use for audio capture and playback and notify any registered listeners of the change.
setBitsPerSample(int) - Method in interface ptolemy.media.javasound.LiveSoundInterface
Set the number of bits per sample to use for audio capture and playback and notify any registered listeners of the change.
setBitsPerSample(int) - Method in class ptolemy.media.javasound.LiveSoundJavaSE
Set the number of bits per sample to use for audio capture and playback and notify any registered listeners of the change.
setBoolean(String, boolean) - Method in class ptolemy.gui.Query
Set the current value in the entry with the given name.
setBorder(Border) - Method in class com.jgoodies.forms.builder.PanelBuilder
Sets the panel's border.
setBorderTitle(String) - Method in class org.kepler.gui.SearchUIJPanel
 
setBounds(int, int, int, int) - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Sets the cell bounds (location and extent) to the given column, row, column span and row span.
setBounds(int, int, int, int) - Method in class org.ecoinformatics.seek.querybuilder.DBTableFrame
Overrides the super class so we can adjust the size of the DesktopPane when a * a TableFrame is moved or resized
setBounds(Rectangle) - Method in class org.ecoinformatics.seek.querybuilder.DBTableFrame
Overrides the super class so we can adjust the size of the DesktopPane when a TableFrame is moved or resized
setBounds(Rectangle) - Method in interface org.ecoinformatics.seek.querybuilder.DBWhereIFace
Sets it bounds of where it is being rendered
setBounds(Rectangle) - Method in class org.ecoinformatics.seek.querybuilder.DBWhereListCellBase
Sets the bounds of the item
setBounds(int, int, int, int) - Method in class ptolemy.plot.PlotBox
Move and resize this component.
setBufferSize(int) - Method in class org.kepler.bio.stratosphere.input.FASTAInputFormat
Sets the size of the buffer to be used to find record boundaries.
setBufferSize(int) - Method in class org.kepler.bio.stratosphere.input.FASTAInputFormatBySize
Sets the size of the buffer to be used to find record boundaries.
setBufferSize(int) - Static method in class ptolemy.media.javasound.LiveSound
Request that the internal capture and playback audio buffers have bufferSize samples per channel and notify the registered listeners of the change.
setBufferSize(int) - Method in interface ptolemy.media.javasound.LiveSoundInterface
Request that the internal capture and playback audio buffers have bufferSize samples per channel and notify the registered listeners of the change.
setBufferSize(int) - Method in class ptolemy.media.javasound.LiveSoundJavaSE
Request that the internal capture and playback audio buffers have bufferSize samples per channel and notify the registered listeners of the change.
setBusy() - Method in class org.ecoinformatics.seek.datasource.DataSourceIcon
Set the icon to Busy state
setButton(JButton) - Method in class org.kepler.cloudsharing.gui.CloudSharingConfigureAction
Set the button.
setButton(JButton) - Method in class org.kepler.provenance.gui.ProvenanceConfigureAction
Set the button.
setButton(JButton) - Method in class org.kepler.tagging.gui.TagAddAction
Set the button.
setButtonPanel(JPanel) - Method in class org.ecoinformatics.seek.ecogrid.EcogridPreferencesTab
Method to reset buttion panel
setButtons(boolean) - Method in class ptolemy.plot.PlotBox
If the argument is true, make a fill button visible at the upper right.
setButtons(boolean) - Method in interface ptolemy.plot.PlotBoxInterface
If the argument is true, make a fill button visible at the upper right.
setButtons(boolean) - Method in class ptolemy.plot.PlotLive
If the argument is true, make a start, stop, and fill button visible at the upper right.
setCacheContent(CacheContent) - Method in class org.kepler.kar.KARCacheContent
 
setCachedResult(CachedStrategy) - Method in class ptolemy.graph.analysis.strategy.CachedStrategy
Set the cached value of this analyzer to the cached value of another analyzer.
setCancelAction(Action) - Method in class org.kepler.gui.SearchUIJPanel
Sets the Action to be used when the Cancel button is pressed.
setCancelButtonEnabled(boolean) - Method in class org.kepler.gui.SearchUIJPanel
 
setCandidateValue(int, Object) - Method in class org.kepler.plotting.Row
 
setCapacity(int) - Method in class ptolemy.actor.QueueReceiver
Set receiver capacity.
setCapacity(int) - Method in class ptolemy.actor.util.FIFOQueue
Set queue capacity.
setCapacity(int) - Method in class ptolemy.domains.sdf.kernel.ArrayFIFOQueue
Set queue capacity.
setCapacity(int) - Method in class ptolemy.domains.sdf.kernel.SDFReceiver
Set receiver capacity.
setCaptions(Vector) - Method in class ptolemy.plot.PlotBox
Set the strings of the caption.
setCaptions(Vector) - Method in interface ptolemy.plot.PlotBoxInterface
Set the strings of the caption.
setCellConstraints(String, CellConstraints) - Method in class org.mlc.swing.layout.ContainerLayout
 
setCellEditor(TableCellEditor) - Method in class org.kepler.workflowrunmanager.gui.GroupableTableHeader
 
setCenter(Point2D) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Set the center location of the visible part of the pane.
setCentered(boolean) - Method in class ptolemy.vergil.icon.ShapeIcon
Specify whether the figure should be centered or not.
setCentering(boolean) - Method in class ptolemy.gui.Top
Specify whether or not to center the window on the screen when packing it.
SetChange<T> - Class in org.kepler.tagging.util
Created by IntelliJ IDEA.
SetChange(Set<T>, Set<T>) - Constructor for class org.kepler.tagging.util.SetChange
 
setChanged(boolean) - Method in class org.ecoinformatics.seek.querybuilder.DBTableJoinItem
Sets that the polygons have changed
setChanged(boolean) - Method in class org.kepler.objectmanager.ActorMetadata
set the changed flag. this is useful for keeping track of the state of the actor metadata. this flag does not affect this class in any internal way except for setting the flag.
setChannels(int) - Static method in class ptolemy.media.javasound.LiveSound
Set the number of audio channels to use for capture and playback and notify any registered listeners of the change.
setChannels(int) - Method in interface ptolemy.media.javasound.LiveSoundInterface
Set the number of audio channels to use for capture and playback and notify any registered listeners of the change.
setChannels(int) - Method in class ptolemy.media.javasound.LiveSoundJavaSE
Set the number of audio channels to use for capture and playback and notify any registered listeners of the change.
setCheckboxState(boolean) - Method in class org.kepler.tagging.TagReloadType.TagCacheChange
 
setCheckpoint() - Method in class org.kepler.objectmanager.cache.LocalRepositoryManager
Save the local repo dirs to a private variable so we can determine when they have changed between build points.
setChildrenUndoable(boolean) - Method in class ptolemy.moml.UndoContext
Set whether or not the child contexts are undoable.
setClassDefinition(boolean) - Method in class ptolemy.actor.LazyTypedCompositeActor
Specify whether this object is a class definition.
setClassDefinition(boolean) - Method in class ptolemy.kernel.CompositeEntity
Specify whether this object is a class definition.
setClassDefinition(boolean) - Method in class ptolemy.kernel.Entity
Specify whether this object is a class definition.
setClassDefinition(boolean) - Method in class ptolemy.kernel.InstantiableNamedObj
Specify whether this object is a class definition.
setClassId(String) - Method in class org.kepler.objectmanager.ActorMetadata
 
setClassifications(String[]) - Method in class org.geon.LidarJobConfig
 
setClassName(String) - Method in class org.kepler.moml.KeplerActorMetadata
 
setClassName(String) - Method in class org.kepler.objectmanager.cache.CacheContent
 
setClassName(String) - Method in class ptolemy.kernel.util.NamedObj
Set the MoML class name.
setCleanup(boolean) - Method in class org.sdm.spa.actors.transport.FileCopierBase
 
setClearButton(JButton) - Method in class org.kepler.plotting.Plot
 
setClip(Shape) - Method in class ptolemy.plot.EPSGraphics
 
setClip(int, int, int, int) - Method in class ptolemy.plot.EPSGraphics
 
setClockDrift(double) - Method in class ptolemy.actor.LocalClock
Set the new clock drift and commit it.
setClosed() - Method in class org.kepler.gui.PreferencesFrameTracker
 
setClosedIcon(Icon) - Method in class org.kepler.gui.OntologyTreeCellRenderer
Sets the icon used to represent non-leaf nodes that are not expanded.
SetClosure(boolean) - Method in class org.ecoinformatics.seek.querybuilder.DBWhereOperator
Sets whether it is a closure object
setcmdLineOptions(String) - Method in class org.kepler.ssh.SshExec
 
setCmdLineOptions(String) - Method in class org.sdm.spa.actors.transport.FileCopierBase
 
setCollaplseDelimiter(boolean) - Method in class org.kepler.objectmanager.data.db.Entity
Method to set collapse delimiter
setCollapseDelimiter(String) - Method in class org.kepler.objectmanager.data.text.TextDelimitedDataFormat
 
setCollapseDelimiter(boolean) - Method in class org.kepler.util.DelimitedReader
Method to set up collapseDelimiter.
setColor(Color) - Method in class org.kepler.sms.Color
 
setColor(Color) - Method in class org.kepler.sms.NamedOntModel
 
setColor(Color) - Method in class org.kepler.sms.OntologyRow
 
setColor(Color) - Method in class org.kepler.tagging.gui.DeletableColorIconLabel
 
setColor(String) - Method in class ptolemy.gui.Query.QueryColorChooser
Set selected color name.
setColor(Color) - Method in class ptolemy.plot.EPSGraphics
Set the current color.
setColor(boolean) - Method in class ptolemy.plot.PlotBox
If the argument is false, draw the plot without using color (in black and white).
setColor(boolean) - Method in interface ptolemy.plot.PlotBoxInterface
If the argument is false, draw the plot without using color (in black and white).
setColors(Color[]) - Method in class ptolemy.plot.PlotBox
Set the point colors.
setColors(Object[]) - Method in class ptolemy.plot.PlotBox
Set the array of colors Implements the PlotBoxInterface.
setColors(Object[]) - Method in interface ptolemy.plot.PlotBoxInterface
Set the point colors.
setColumn(int) - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Sets the cursor to the given column.
setColumnGroups(int[][]) - Method in class com.jgoodies.forms.layout.FormLayout
Sets the column groups, where each column in a group gets the same group wide width.
setColumnGroupVisible(int, ColumnGroup, boolean) - Method in class org.kepler.workflowrunmanager.gui.GroupableTableColumnModel
 
setColumnMargin(int) - Method in class org.kepler.workflowrunmanager.gui.ColumnGroup
Sets the margin that ColumnGroup instance will use and all held TableColumns and/or ColumnGroups.
setColumnMargin() - Method in class org.kepler.workflowrunmanager.gui.GroupableTableHeader
Sets the margins correctly for all groups within the header.
setColumnNotNull(Column, String) - Method in class org.kepler.util.sql.DatabaseType
Set not null constraint to a column.
setColumnNotNull(Column, String) - Method in class org.kepler.util.sql.HSQL
Set not null constraint to a column.
setColumnNotNull(Column, String) - Method in class org.kepler.util.sql.MySQL
Set not null constraint to a column.
setColumnNotNull(Column, String) - Method in class org.kepler.util.sql.Oracle
Set not null constraint to a column.
setColumnNotNull(Column, String) - Method in class org.kepler.util.sql.PostgreSQL
Set not null constraint to a column.
setColumnNull(Column, String) - Method in class org.kepler.util.sql.DatabaseType
Change a column to allow null values.
setColumnNull(Column, String) - Method in class org.kepler.util.sql.HSQL
Change a column to allow null values.
setColumnNull(Column, String) - Method in class org.kepler.util.sql.MySQL
Change a column to allow null values.
setColumnNull(Column, String) - Method in class org.kepler.util.sql.Oracle
Change a column to allow null values.
setColumnNull(Column, String) - Method in class org.kepler.util.sql.PostgreSQL
Change a column to allow null values.
setColumns(int) - Method in interface ptolemy.actor.lib.gui.DisplayInterface
Set the desired number of columns of the textArea, if there is one.
setColumns(int) - Method in class ptolemy.actor.lib.gui.DisplayJavaSE
Set the desired number of columns of the textArea, if there is one.
setColumns(int) - Method in class ptolemy.gui.Query
Specify the number of columns to use.
setColumnSpan(int) - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Sets the cursor's column span.
setColumnSpec(int, ColumnSpec) - Method in class com.jgoodies.forms.layout.FormLayout
Sets the ColumnSpec at the specified column index.
setColumnSpec(int, String) - Method in class org.mlc.swing.layout.ContainerLayout
 
setCommands(List) - Method in class ptolemy.gui.JTextAreaExec
Set the list of commands.
setCommands(List) - Method in interface ptolemy.util.ExecuteCommands
Set the list of commands.
setCommands(List) - Method in class ptolemy.util.StreamExec
Set the list of commands.
setComponentDef(ComponentDef) - Method in class org.mlc.swing.layout.NewComponentDialog
 
setComponentFactory(ComponentFactory) - Method in class com.jgoodies.forms.builder.PanelBuilder
Sets a new component factory.
setComponentLibraryTab(ComponentLibraryTab) - Method in class org.kepler.workflowscheduler.gui.ScheduleChangeController
Set the component library tab
setComponentName(String) - Method in class org.mlc.swing.layout.NewComponentDialog
 
setCompressionMethod(String) - Method in class org.kepler.objectmanager.data.db.Entity
Method to set compression method for distribution file
setConceptDef(String) - Method in class org.kepler.sms.SemanticTypeDefinition
 
setConceptId(String) - Method in class org.kepler.sms.SemanticType
set the semantic type concept value
setConceptName(String) - Method in class org.kepler.sms.SemanticType
 
setConfiguration(Configuration) - Method in class org.kepler.gui.controller.TabbedActorController
 
setConfiguration(Configuration) - Method in class org.kepler.gui.RemoveComponentAction
set the config
setConfiguration(Configuration) - Method in class org.kepler.spark.stub.PairFlatMapFunctionBase
Set the configuration parameters.
setConfiguration(Configuration) - Method in class ptolemy.chic.ChicController
Set the configuration.
setConfiguration(Configuration) - Method in class ptolemy.vergil.actor.ActorController.ListenToActorAction
Set the configuration for use by the help screen.
setConfiguration(Configuration) - Method in class ptolemy.vergil.actor.ActorController
Set the configuration.
setConfiguration(Configuration) - Method in class ptolemy.vergil.actor.ActorEditorGraphController
Set the configuration.
setConfiguration(Configuration) - Method in class ptolemy.vergil.actor.ActorViewerGraphController
Set the configuration.
setConfiguration(Configuration) - Method in class ptolemy.vergil.actor.DocBuilder
Set the configuration.
setConfiguration(Configuration) - Method in class ptolemy.vergil.actor.ExternalIOPortController
Set the configuration.
setConfiguration(Configuration) - Method in class ptolemy.vergil.actor.LinkController
Set the configuration.
setConfiguration(Configuration) - Method in class ptolemy.vergil.basic.BasicGraphController
Set the configuration.
setConfiguration(Configuration) - Method in class ptolemy.vergil.basic.GetDocumentationAction
Set the configuration.
setConfiguration(Configuration) - Method in class ptolemy.vergil.basic.LookInsideAction
Set the configuration to be used by the LookInsideAction object.
setConfiguration(Configuration) - Method in class ptolemy.vergil.basic.MoMLModelAttributeController
Set the configuration for MoMLModelAttributeController.
setConfiguration(Configuration) - Method in class ptolemy.vergil.basic.NamedObjController
Set the configuration.
setConfiguration(Configuration) - Method in class ptolemy.vergil.basic.WithIconGraphController
Set the configuration.
setConfiguration(Configuration) - Method in class ptolemy.vergil.icon.EditIconGraphController
Set the configuration.
setConfiguration(Configuration) - Method in class ptolemy.vergil.kernel.AttributeController
Set the configuration.
setConfiguration(Configuration) - Method in class ptolemy.vergil.kernel.ListenToAction
Set the configuration for use by the help screen.
setConfiguration(Configuration) - Method in class ptolemy.vergil.kernel.PortDialogAction
Set the configuration for use by the help screen.
setConfiguration(Configuration) - Method in class ptolemy.vergil.kernel.PortDialogFactory
Deprecated.
Set the configuration for use by the help screen.
setConfiguration(Configuration) - Method in class ptolemy.vergil.kernel.RelationController
Set the configuration.
setConfiguration(Configuration) - Method in class ptolemy.vergil.modal.FSMGraphController
Set the configuration.
setConfiguration(Configuration) - Method in class ptolemy.vergil.modal.FSMViewerGraphController
Set the configuration.
setConfiguration(Configuration) - Method in class ptolemy.vergil.modal.TransitionController
Set the configuration.
setConfiguration(Configuration) - Method in class ptolemy.vergil.toolbox.EditIconAction
Specify the configuration.
setConfiguration(Configuration) - Method in class ptolemy.vergil.toolbox.RemoveIconAction
Specify the configuration.
setConfiguration(Configuration) - Method in class ptolemy.vergil.unit.ConfigureUnitsAction
Set the configuration for use by the help screen.
setConfiguredObject(NamedObj) - Method in class ptolemy.domains.modal.kernel.Configurer
Set the object that this configurer configures.
setConnected(boolean) - Method in class ptolemy.plot.Plot
If the argument is true, then the default is to connect subsequent points with a line.
setConnected(boolean, int) - Method in class ptolemy.plot.Plot
If the first argument is true, then by default for the specified dataset, points will be connected by a line.
setConnected(boolean) - Method in interface ptolemy.plot.PlotInterface
If the argument is true, then the default is to connect subsequent points with a line.
setConnected(boolean, int) - Method in interface ptolemy.plot.PlotInterface
If the first argument is true, then by default for the specified dataset, points will be connected by a line.
setConnectionOrigin(boolean) - Method in class org.sdm.spa.actors.transport.vo.ConnectionDetails
 
setConstant(boolean) - Method in class ptolemy.data.expr.ASTPtRootNode
Set whether this node is a constant.
setConstraints(Component, CellConstraints) - Method in class com.jgoodies.forms.layout.FormLayout
Sets the constraints for the specified component in this layout.
setConstructionMode() - Method in class ptolemy.domains.modal.kernel.ParseTreeEvaluatorForGuardExpression
Set parse tree evaluator to be in construction mode.
setContainer(CompositeEntity) - Method in class org.kepler.gui.frame.MultiCompositeTableau
Set the container for this tableau.
setContainer(CompositeEntity) - Method in class org.kepler.gui.frame.TabbedKeplerGraphTableau
Override the parent class so that if the new container is null and we did not create a new frame, then set the frame to null so that it is not disposed of by the parent class.
setContainer(NamedObj) - Method in class org.kepler.moml.NamedObjId
Override setContainer method to handle adding and removing the listener based on whether or not there is a container.
setContainer(NamedObj) - Method in class org.kepler.monitor.MonitorAttribute
If this component is removed from its container, finish monitoring
setContainer(NamedObj) - Method in class org.kepler.monitor.MonitorManager
If container is null, it finishes monitoring
setContainer(NamedObj) - Method in class org.kepler.provenance.ProvenanceRecorder
Change the container.
setContainer(ProvenanceRecorder) - Method in class org.kepler.provenance.Recording
Set the container.
setContainer(NamedObj) - Method in class org.kepler.sms.actors.SimpleMergeConversion
Set the container of the virtual port to the given container.
setContainer(NamedObj) - Method in class org.kepler.sms.actors.SimpleMergeMapping
 
setContainer(NamedObj) - Method in class org.kepler.sms.actors.SimpleMergeSourceActor
Set the container of the virtual port to the given container.
setContainer(NamedObj) - Method in class org.kepler.sms.actors.SimpleMergeSourceActorPort
Set the container of the virtual port to the given container.
setContainer(NamedObj) - Method in class org.kepler.sms.actors.SimpleMergeTargetPort
Set the container of the virtual port to the given container.
setContainer(NamedObj) - Method in class org.kepler.sms.KeplerIOPortSemanticLink
FIXME: This should be "external" to the port ...
setContainer(NamedObj) - Method in class org.kepler.sms.KeplerVirtualIOPort
Set the container of the virtual port to the given container.
setContainer(NamedObj) - Method in class org.kepler.sms.SemanticProperty
Set the container of the semantic property to the given container.
setContainer(NamedObj) - Method in class org.kepler.webview.actor.WebViewAttribute
Set the container.
setContainer(ProvenanceRecorder) - Method in class org.kepler.webview.provenance.WebViewRecording
 
setContainer(NamedObj) - Method in class org.kepler.webview.server.WebViewId
Override the base class to remove an existing WebViewId in the container.
setContainer(CompositeEntity) - Method in class org.sdm.spa.gui.UserInteractiveShell
Override the base class to remove the shell from its graphical container if the argument is null.
setContainer(CompositeEntity) - Method in class org.sdm.spa.TextualInteractionShell
Override the base class to remove the shell from its graphical container if the argument is null.
setContainer(NamedObj) - Method in class ptolemy.actor.AbstractInitializableAttribute
Override the base class to register as an Initializable so that preinitialize() is invoked, and as a HierarchyListener, so that we are notified of changes in the hierarchy above.
setContainer(IOPort) - Method in class ptolemy.actor.AbstractReceiver
Set the container.
setContainer(CompositeEntity) - Method in class ptolemy.actor.AtomicActor
Override the base class to invalidate the schedule and resolved types of the director.
setContainer(CompositeEntity) - Method in class ptolemy.actor.CompositeActor
Override the base class to invalidate the schedule and resolved types of the director.
setContainer(NamedObj) - Method in class ptolemy.actor.Director
Specify the container.
setContainer(CompositeEntity) - Method in class ptolemy.actor.gui.Configuration
If the argument is not null, then throw an exception.
setContainer(CompositeEntity) - Method in class ptolemy.actor.gui.ConfigurationEffigy
Specify the container, adding the entity to the list of entities in the container.
setContainer(CompositeEntity) - Method in class ptolemy.actor.gui.Effigy
Override the base class so that tableaux contained by this object are removed before this effigy is removed from the ModelDirectory.
setContainer(NamedObj) - Method in class ptolemy.actor.gui.ModelRepaintController
Specify the container NamedObj, adding this attribute to the list of attributes in the container.
setContainer(NamedObj) - Method in class ptolemy.actor.gui.properties.ComboBox.Item
Specify the container NamedObj, adding this attribute to the list of attributes in the container.
setContainer(NamedObj) - Method in class ptolemy.actor.gui.properties.GUIProperty
Specify the container NamedObj, adding this attribute to the list of attributes in the container.
setContainer(NamedObj) - Method in class ptolemy.actor.gui.style.CheckBoxStyle
Override the base class to check that the container is an instance of parameter.
setContainer(NamedObj) - Method in class ptolemy.actor.gui.style.ParameterEditorStyle
Override the base class to first check that the container is an instance of Settable.
setContainer(CompositeEntity) - Method in class ptolemy.actor.gui.Tableau
Override the base class so that if the argument is null and the window is a master, then all other windows associated with the container are closed and the model is removed from the ModelDirectory.
setContainer(IOPort) - Method in class ptolemy.actor.IntermediateReceiver
Set the container of the internal receiver.
setContainer(Entity) - Method in class ptolemy.actor.IOPort
Override the base class to ensure that the proposed container implements the Actor interface (the base class ensures that the container is an instance of ComponentEntity) or null.
setContainer(CompositeEntity) - Method in class ptolemy.actor.IORelation
Specify the container, adding the relation to the list of relations in the container.
setContainer(NamedObj) - Method in class ptolemy.actor.lib.ExceptionManager
Override the base class to register as an Initializable so that preinitialize() is invoked, and as a HierarchyListener, so that we are notified of changes in the hierarchy above.
setContainer(CompositeEntity) - Method in class ptolemy.actor.lib.gui.Display
Override the base class to remove the display from its graphical container if the argument is null.
setContainer(CompositeEntity) - Method in class ptolemy.actor.lib.gui.InteractiveDialog
Override the base class to remove the shell from its graphical container if the argument is null.
setContainer(CompositeEntity) - Method in class ptolemy.actor.lib.gui.InteractiveShell
Override the base class to remove the shell from its graphical container if the argument is null.
setContainer(CompositeEntity) - Method in class ptolemy.actor.lib.gui.MatrixViewer
Override the base class to remove the display from its graphical container if the argument is null.
setContainer(CompositeEntity) - Method in class ptolemy.actor.lib.gui.PlotterBase
Override the base class to remove the plot from its graphical container if the argument is null.
setContainer(CompositeEntity) - Method in class ptolemy.actor.lib.gui.SliderSource
Override the base class to remove the display from its graphical container if the argument is null.
setContainer(Entity) - Method in class ptolemy.actor.lib.hoc.MirrorPort
Override the base class so that if the container is being set to null, then the associated port is also deleted (via a change request).
setContainer(Entity) - Method in class ptolemy.actor.lib.hoc.MultiCompositePort
Override the base class so that if the port is being removed from the current container, then it is also removed from the controller and from each of the refinements.
setContainer(Entity) - Method in class ptolemy.actor.lib.hoc.RefinementPort
Override the base class so that if the port is being removed from the current container, then it is also removed from the controller and from each of the refinements.
setContainer(Entity) - Method in class ptolemy.actor.parameters.ParameterMirrorPort
Override the base class so that if the container is being set to null, then the associated port is also deleted (via a change request).
setContainer(Entity) - Method in class ptolemy.actor.parameters.ParameterPort
Set the container of this port.
setContainer(NamedObj) - Method in class ptolemy.actor.parameters.ParameterSet
Override the base class to register as a piggyback with the nearest opaque composite actor above in the hierarchy.
setContainer(NamedObj) - Method in class ptolemy.actor.parameters.PortParameter
Set the container of this parameter.
setContainer(NamedObj) - Method in class ptolemy.actor.parameters.SharedParameter
Override the base class to register as an initializable slave with the new container.
setContainer(IOPort) - Method in class ptolemy.actor.process.MailboxBoundaryReceiver
Set the container.
setContainer(Entity) - Method in class ptolemy.actor.PubSubPort
Override the base class to register as an Initializable so that preinitialize() is invoked, and as a HierarchyListener, so that we are notified of changes in the hierarchy above.
setContainer(IOPort) - Method in interface ptolemy.actor.Receiver
Set the container.
setContainer(IOPort) - Method in class ptolemy.actor.sched.FixedPointReceiver
Set the container.
setContainer(NamedObj) - Method in class ptolemy.actor.sched.Scheduler
Specify the container.
setContainer(NamedObj) - Method in class ptolemy.actor.TypeAttribute
Override the base class to remove any other instances of TypeAttribute.
setContainer(Nameable) - Method in class ptolemy.actor.util.FIFOQueue
Set the container of the queue.
setContainer(NamedObj) - Method in class ptolemy.chic.ChicAttribute
Remove any previous ChicAttribute in the container that has the same name as this attribute, and then call the base class method to set the container.
setContainer(NamedObj) - Method in class ptolemy.data.expr.AbstractInitializableParameter
Override the base class to register as an Initializable so that preinitialize() is invoked, and as a HierarchyListener, so that we are notified of changes in the hiearchy above.
setContainer(NamedObj) - Method in class ptolemy.data.expr.ScopeExtendingAttribute
Specify the container NamedObj, adding this attribute to the list of attributes in the container.
setContainer(NamedObj) - Method in class ptolemy.data.expr.SingletonParameter
Remove any previous attribute in the container that has the same name as this attribute, and then call the base class method to set the container.
setContainer(NamedObj) - Method in class ptolemy.data.expr.Variable
Specify the container, and add this variable to the list of attributes in the container.
setContainer(NamedObj) - Method in class ptolemy.data.unit.UnitCategory
Set the container and register this object in to the system wide unit system by calling UnitUtilities.registerUnitCategory(String).
setContainer(CompositeEntity) - Method in class ptolemy.domains.de.lib.EventButton
Deprecated.
Override the base class to remove the display from its graphical container if the argument is null.
setContainer(NamedObj) - Method in class ptolemy.domains.modal.kernel.Action
Set the container of this action.
setContainer(NamedObj) - Method in class ptolemy.domains.modal.kernel.FSMDirector
If the container is not null, register this director as the model error handler.
setContainer(NamedObj) - Method in class ptolemy.domains.modal.kernel.FSMTransitionParameter
 
setContainer(CompositeEntity) - Method in class ptolemy.domains.modal.kernel.ia.InterfaceAutomatonTransition
Override the base class to ensure that the proposed container is an instance of InterfaceAutomaton or null.
setContainer(CompositeEntity) - Method in class ptolemy.domains.modal.kernel.Transition
Override the base class to ensure that the proposed container is an instance of FSMActor or null; if it is null, then remove it from the container, and also remove any refinement(s) that it references that are not referenced by some other transition or state.
setContainer(Entity) - Method in class ptolemy.domains.modal.modal.ModalPort
Override the base class so that if the port is being removed from the current container, then it is also removed from the controller and from each of the refinements.
setContainer(Entity) - Method in class ptolemy.domains.modal.modal.ModalRefinementPort
Override the base class so that if the port is being removed from the current container, then it is also removed from the controller and from each of the refinements.
setContainer(Entity) - Method in class ptolemy.domains.modal.modal.RefinementPort
Override the base class so that if the port is being removed from the current container, then it is also removed from the controller and from each of the refinements.
setContainer(Entity) - Method in class ptolemy.domains.modal.modal.TransitionRefinementPort
Override the base class so that if the port is being removed from the current container, then it is also removed from the controller and from each of the refinements.
setContainer(IOPort) - Method in class ptolemy.domains.pn.kernel.PNQueueReceiver
Set the container.
setContainer(Nameable) - Method in class ptolemy.domains.sdf.kernel.ArrayFIFOQueue
Set the container of the queue.
setContainer(CompositeEntity) - Method in class ptolemy.kernel.ComponentEntity
Specify the container, adding the entity to the list of entities in the container.
setContainer(Entity) - Method in class ptolemy.kernel.ComponentPort
Specify the container entity, adding the port to the list of ports in the container.
setContainer(CompositeEntity) - Method in class ptolemy.kernel.ComponentRelation
Specify the container entity, adding the relation to the list of relations in the container.
setContainer(CompositeEntity) - Method in class ptolemy.kernel.CompositeEntity
Override the base class so that if the argument is null, all level-crossing links from inside this composite to outside this composite are removed.
setContainer(Entity) - Method in class ptolemy.kernel.Port
Specify the container entity, adding the port to the list of ports in the container.
setContainer(NamedObj) - Method in class ptolemy.kernel.util.Attribute
Specify the container NamedObj, adding this attribute to the list of attributes in the container.
setContainer(NamedObj) - Method in class ptolemy.kernel.util.SingletonAttribute
Remove any previous attribute in the container that has the same name as this attribute, and then call the base class method to set the container.
setContainer(NamedObj) - Method in class ptolemy.kernel.util.SingletonConfigurableAttribute
Remove any previous attribute in the container that has the same name as this attribute, and then call the base class method to set the container.
setContainer(NamedObj) - Method in class ptolemy.kernel.util.TransientSingletonConfigurableAttribute
Deprecated.
Remove any previous attribute in the container that has the same name as this attribute, and then call the base class method to set the container.
setContainer(NamedObj) - Method in class ptolemy.vergil.actor.lib.MonitorReceiverContents
Specify the container.
setContainer(NamedObj) - Method in class ptolemy.vergil.actor.lib.ShowTypes
Specify the container.
setContainer(NamedObj) - Method in class ptolemy.vergil.icon.ConstraintMonitorIcon
Override the base class to throw an exception if the container is not an instance of ConstraintMonitor.
setContainer(NamedObj) - Method in class ptolemy.vergil.icon.NameIcon
Override the base class to add or set a _hideName parameter.
setContainer(NamedObj) - Method in class ptolemy.vergil.icon.SVGIcon
Override the base class to establish this as a listener to icon descriptions in the container.
setContainerLSID(KeplerLSID) - Method in class org.kepler.provenance.Recording
Set the container LSID.
setContainerName(String) - Method in class org.kepler.provenance.Recording
Set the container name.
setContainerToBe(NamedObj) - Method in class ptolemy.vergil.icon.EditorIcon
Indicate that the container of this icon will eventually be the specified object.
setContainerToBe(NamedObj) - Method in class ptolemy.vergil.icon.SVGIcon
Indicate that the container of this icon will eventually be the specified object.
setContentHandler(ContentHandler) - Method in class com.microstar.xml.driver.SAXDriver
 
setContentHandler(ContentHandler) - Method in class org.kepler.reporting.rio.fop.tools.AbstractObjectReader
 
setContents(JComponent) - Method in class ptolemy.actor.gui.PtolemyDialog
Set the contents of this dialog.
setContext(JavaSparkContext) - Method in class org.kepler.spark.operator.DataSource
Set the spark context.
setContext(Component) - Static method in class ptolemy.gui.UndeferredGraphicalMessageHandler
Set the component with respect to which the display window should be created.
setContext(NamedObj) - Method in class ptolemy.moml.MoMLParser
Set the context for parsing.
setConversion(String) - Method in class org.kepler.sms.actors.SimpleMergeConversion
Set the conversion to use
setConversion(String) - Method in class org.kepler.sms.actors.SimpleMergeMapping
Set the name of the conversion
setCreatedDate(Date) - Method in class org.kepler.objectmanager.cache.DataCacheObject
 
setCredential(String) - Method in class org.kepler.authentication.ProxyEntity
 
setCriteria(DBSelectTableModelItem, Object) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelBase
Sets the crieria field if it is a string
setCriteria(String) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
 
setCRS(SimpleFeatureCollection, CoordinateReferenceSystem) - Static method in class org.kepler.gis.util.VectorUtilities
Set the coordinate reference system for a set of features.
setCurrent(LayoutStyle) - Static method in class com.jgoodies.forms.util.LayoutStyle
Set a new LayoutStyle.
setCurrentDirectory(File) - Method in class ptolemy.gui.PtFileChooser
Set the current directory.
setCurrentTime(double) - Method in class ptolemy.actor.Director
Deprecated.
As of Ptolemy 4.1, replaced by Director.setModelTime(ptolemy.actor.util.Time)
setCurrentValue(Token) - Method in class ptolemy.actor.parameters.PortParameter
Set the current value of this parameter and notify the container and value listeners.
setCurrPanel(DragAndDropPanel) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
 
setCurrSelectedItem(Item) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
 
setDashArray(float[]) - Method in class ptolemy.vergil.icon.ShapeIcon
Specify the dash array to use for rendering lines.
setData(String) - Method in class org.kepler.gis.display.ENMPCPFrame
Sets the data attribute of the ENMPCPFrame object
setData(Writable) - Method in class org.kepler.hadoop.io.TaggedValue
 
setData(byte[]) - Method in class org.kepler.objectmanager.cache.BufferedDataCacheObject
Sets the data into the cache item
setData(InputStream) - Method in class org.kepler.objectmanager.cache.RawDataCacheObject
set the data file that is associated with this RawDataCacheObject
setDataCacheObject(DataCacheObject) - Method in class org.kepler.objectmanager.data.db.Entity
Method to set a cache data item associate with this entity
setDataFormatArray(TextComplexDataFormat[]) - Method in class org.kepler.objectmanager.data.db.Entity
Set DataFormatArray
setDataPort(TypedIOPort) - Method in class org.kepler.plotting.Row
 
setDataset(Dataset) - Method in class org.kepler.plotting.DataTable
 
setDataStream(InputStream) - Method in class org.kepler.objectmanager.data.text.TextComplexFormatDataReader
 
setDataType(String) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
Sets the dataType
setDataType(String) - Method in class org.kepler.objectmanager.data.DataObjectDescription
Set the type for this data item.
setDataurl(String) - Method in class ptolemy.plot.PlotBox
Deprecated.
Use read() instead.
setDataurl(String) - Method in interface ptolemy.plot.PlotBoxInterface
Deprecated.
Use read() instead.
setDate(Date, Date) - Method in class org.kepler.gis.actor.pylaski.PylaskiUtilities.Settings
Sets the date range for data search.
setDate(Date, int) - Method in class org.kepler.gis.actor.pylaski.PylaskiUtilities.Settings
Sets the date around a central time.
setDate(Date) - Method in class org.kepler.gis.actor.pylaski.PylaskiUtilities.Settings
Sets the date around a central time.
setDate(long) - Method in class org.kepler.io.FileInfo
 
setDateChanged(Date) - Method in class org.kepler.objectmanager.cache.CacheContent
 
setDateTimePrecision(double) - Method in class org.kepler.objectmanager.data.DateTimeDomain
 
setDBTableName(String) - Method in class org.kepler.objectmanager.data.db.Entity
 
setDebuggable(Debuggable) - Method in class ptolemy.actor.gui.DebugListenerTableau
Set the object for this tableau to listen to, or null to stop listening to the current one.
setDebugging(byte) - Method in class ptolemy.matlab.Engine
Enable/disable debug statements to stdout.
setDebugStream(PrintStream) - Method in class ptolemy.data.expr.MatrixParserTokenManager
Set debug output.
setDebugStream(PrintStream) - Method in class ptolemy.data.expr.PtParserTokenManager
Set debug output.
setDebugStream(PrintStream) - Method in class ptolemy.moml.unit.UParserTokenManager
Set debug output.
setDebugWriter(Writer) - Method in class org.kepler.provenance.ProvenanceRecorder
Set a writer for debugging output.
setDebugWriter(Writer) - Method in class org.kepler.provenance.Recording
Set a Writer for debugging output.
setDecorator(FigureDecorator) - Method in class ptolemy.vergil.kernel.AnimationRenderer
Set the prototype decorator.
setDefaultButton() - Method in class ptolemy.actor.gui.ModelPane
Make the Go button the default button for the root pane.
setDefaultButtonBarGapBorder() - Method in class com.jgoodies.forms.builder.ButtonBarBuilder
Sets a default border that has a gap in the bar's north.
setDefaultClassLoadingStrategy(ClassLoadingStrategy) - Static method in class ptolemy.moml.MoMLParser
Set the static default class loading strategy that will be used by all instances of this class.
setDefaultDialogBorder() - Method in class com.jgoodies.forms.builder.PanelBuilder
Sets the default dialog border.
setDefaultDialogFont(Font) - Method in class com.jgoodies.forms.util.DefaultUnitConverter
Sets a dialog font that will be used to compute the dialog base units.
setDefaultFileName(String) - Method in class org.kepler.gui.kar.ExportArchiveAction
Set default KAR save filename.
setDefaultLocalRepos() - Method in class org.kepler.objectmanager.cache.LocalRepositoryManager
Set the default local repositories to be the kar directories for each of the modules in the system along with a default workflows directory.
setDefaultPreferences(Configuration) - Static method in class ptolemy.actor.gui.PtolemyPreferences
Look for a default preferences object within the specified configuration, and set it as the default preferences.
setDefaultSaveRepo() - Method in class org.kepler.objectmanager.cache.LocalRepositoryManager
Set the default Save repository.
setDefaultWidth(int) - Method in class ptolemy.actor.IOPort
Set the default width.
setDeferringChangeRequests(boolean) - Method in class ptolemy.actor.lib.hoc.LifeCycleManager
Override the base class to not delegate to the container.
setDeferringChangeRequests(boolean) - Method in interface ptolemy.kernel.util.Changeable
Specify whether change requests made by calls to requestChange() should be executed immediately.
setDeferringChangeRequests(boolean) - Method in class ptolemy.kernel.util.NamedObj
Specify whether change requests made by calls to requestChange() should be executed immediately.
setDefinition(String) - Method in class org.kepler.objectmanager.data.DataObjectDescription
Set the definition for this data item.
setDefinition(String) - Method in class org.kepler.objectmanager.data.text.TextDomain
 
setDegreeOfParallelism(int) - Method in class org.kepler.spark.operator.Operator
Set the number of parallel instances to execute.
setDelay(int) - Method in class org.kepler.monitor.MonitoredStatus.PropertyTimer
Sets the delay for the timer.
setDelimiter(String) - Method in class org.kepler.objectmanager.data.db.Entity
set the delimiter used with this entity
setDependencies(List<String>) - Method in class org.kepler.gui.kar.ImportModuleDependenciesAction
Explicitly set the dependencies for this dependeny broken KAR
setDependencies(Vector<String>) - Method in class org.kepler.kar.KARCacheError
 
setDependentJobs(Job[]) - Method in class org.kepler.job.Job
Specify a set of jobs that must successfully complete before this can start.
setDependents(List) - Method in class ptolemy.actor.util.DependencyDeclaration
Set the set of dependents for this declaration.
setDepth(int) - Method in interface org.ecoinformatics.seek.querybuilder.DBWhereIFace
Sets the depth in the tree
setDepth(int) - Method in class org.ecoinformatics.seek.querybuilder.DBWhereListCellBase
Sets the depth
setDepth(int) - Method in class org.ecoinformatics.seek.querybuilder.DBWhereOperator
Sets the depth
setDerivedLevel(int) - Method in class ptolemy.kernel.util.NamedObj
Set the level above this object in the hierarchy where a parent-child relationship implies the existence of this object.
setDescription(String) - Method in class org.ecoinformatics.seek.ecogrid.EcoGridService
 
setDescription(String) - Method in class org.ecoinformatics.seek.querybuilder.DBFileFilter
Sets the human readable mDescription of this filter.
setDescription(String) - Method in class ptolemy.gui.ExtensionFilenameFilter
Set the human readable description of the types of files accepted by this filter.
setDescription(String) - Method in class ptolemy.kernel.util.ChangeRequest
Set the description.
setDescription(String) - Method in class ptolemy.vergil.basic.KeplerDocumentationAttribute
Set the description.
setDifference(double) - Method in class ptolemy.domains.modal.kernel.RelationNode
Set the difference information with the current evaluation result of the relation node.
setDimensions() - Method in class org.kepler.reporting.gui.DragAndDropPanel
 
setDirector(Director) - Method in class ptolemy.actor.CompositeActor
Set the local director for execution of this CompositeActor.
setDirectory(File) - Static method in class ptolemy.gui.Top
Set the initial default directory.
setDirty(boolean) - Method in class org.kepler.configuration.ConfigurationProperty
set dirty. generally other classes shouldn't call this but it's a good way to force serialization when nothing has actually changed.
setDisplay(DBSelectTableModelItem, Object) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelBase
Sets the field to be marked as "displayed" and updates the UI
setDisplay(String, String) - Method in class ptolemy.gui.Query
Set the displayed text of an entry that has been added using addDisplay.
setDisplayed(boolean) - Method in interface org.ecoinformatics.seek.querybuilder.DBDisplayItemIFace
Set whether it is displayed or not
setDisplayed(boolean) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
Sets the displayed attr, if it has a mDisplayItem it will use that instead for caching the value and making sure the UI is properly updated
setDisplayed(boolean) - Method in class org.ecoinformatics.seek.querybuilder.DBTableField
Set whether it is displayed or not
setDisplayItem(DBDisplayItemIFace) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
Sets the DBDisplayItemIFace object
setDisplayListCell(DBSelectTableModelItem, boolean) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelAdv
Sets Display attr in UI List cell, and causes a refresh to occur
setDisplayListCell(DBSelectTableModelItem, boolean) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelBase
Sets Display attr in UI List cell
setDisplayListCell(DBSelectTableModelItem, boolean) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelStd
Sets Display attr in UI List cell
setDisplayName(String) - Method in class ptolemy.actor.gui.properties.Button
Set a name to present to the user.
setDisplayName(String) - Method in class ptolemy.actor.lib.gui.Display
Set a name to present to the user.
setDisplayName(String) - Method in class ptolemy.actor.lib.gui.InteractiveDialog
Set a name to present to the user.
setDisplayName(String) - Method in class ptolemy.actor.lib.gui.InteractiveShell
Set a name to present to the user.
setDisplayName(String) - Method in class ptolemy.actor.lib.gui.MatrixViewer
Set a name to present to the user.
setDisplayName(String) - Method in class ptolemy.actor.lib.gui.PlotterBase
Set a name to present to the user.
setDisplayName(String) - Method in class ptolemy.actor.parameters.ParameterPort
Set the display name, and propagate the name change to the associated parameter.
setDisplayName(String) - Method in class ptolemy.actor.parameters.PortParameter
Set the display name, and propagate the name change to the associated port.
setDisplayName(String) - Method in class ptolemy.kernel.util.NamedObj
Set a name to present to the user.
setDisplayPane(Container) - Method in class ptolemy.actor.gui.ModelPane
Deprecated.
It is no longer necessary to specify a display pane. The displays are handled by setModel().
setDisplayText(String) - Method in class org.ecoinformatics.seek.ecogrid.EcogridPreferencesTab
Method to set the display string
setDisplayUI(TagBarDisplayUI) - Method in class org.kepler.tagging.gui.TagBarUI
 
setDocAttribute(DocAttribute) - Method in class ptolemy.vergil.actor.DocEffigy
Set the DocAttribute represented by this effigy, if any.
setDocClass(String) - Method in class ptolemy.vergil.basic.KeplerDocumentationAttribute
Set the name of this docClass.
setDocId(String) - Method in class org.kepler.objectmanager.repository.EcogridRepositoryResults
Set the docid (kar xml id)
setDocName(String) - Method in class ptolemy.vergil.basic.KeplerDocumentationAttribute
Set the name of this document.
setDocument(Document) - Method in class ptolemy.actor.gui.TextEffigy
Set the document that this is an effigy of.
setDocumentationAttribute(KeplerDocumentationAttribute) - Method in class org.kepler.objectmanager.ActorMetadata
 
setDocumentBase(URL) - Method in class ptolemy.plot.PlotBox
Deprecated.
Use read() instead.
setDocumentBase(URL) - Method in interface ptolemy.plot.PlotBoxInterface
Deprecated.
Use read() instead.
setDocumentHandler(ContentHandler) - Method in class com.microstar.xml.driver.SAXDriver
Set the document handler for this parser.
setDocumentLocator(Locator) - Method in class org.kepler.reporting.rio.fop.tools.EasyGenerationContentHandlerProxy
 
setDocumentLocator(Locator) - Method in class ptolemy.configs.test.ValidatingXMLParser
 
setDocumentTypeList(DocumentType[]) - Method in class org.ecoinformatics.seek.ecogrid.EcoGridService
Set document type list in this service
setDomain(String) - Method in class org.kepler.authentication.Domain
 
setDomain(Domain) - Method in class org.kepler.authentication.ProxyEntity
 
setDomain(IOPort) - Method in class org.kepler.sms.KeplerIOPortSemanticLink
Assigns the domain of this link.
setDomain(KeplerVirtualIOPort) - Method in class org.kepler.sms.KeplerIOPortSemanticLink
Assigns the domain of this link.
setDomainName(String) - Method in class org.kepler.authentication.gui.LDAPLoginGUI
 
setDownloadable(boolean) - Method in class org.kepler.objectmanager.data.db.Entity
Set this entity downloadable or not. f the value of function attribute in url is "information", this entity wouldn't be downloaded
setDownloader(KARDownloader) - Method in class org.kepler.objectmanager.repository.EcogridRepositoryResults
 
setDragOver(boolean) - Method in class org.ecoinformatics.seek.querybuilder.DBTableField
Sets whether it is currently being dragged over
setDragOver(boolean) - Method in interface org.ecoinformatics.seek.querybuilder.DBWhereIFace
Sets whether it is being dragged over
setDragOver(boolean) - Method in class org.ecoinformatics.seek.querybuilder.DBWhereListCellBase
Sets whether it is currently being dragged over
setDropDown() - Method in class org.kepler.tagging.gui.AutoCompleteComboBox
 
setDropIntoEnabled(boolean) - Method in class ptolemy.vergil.basic.EditorDropTarget
If the argument is false, then disable the feature that a a drop onto an instance of NamedObj results in that NamedObj containing the dropped object.
setDropTarget(EditorDropTarget) - Method in class ptolemy.vergil.basic.EditorDropTargetListener
Links this Listener back to the EditorDropTarget it belongs to.
setDTDHandler(DTDHandler) - Method in class com.microstar.xml.driver.SAXDriver
Set the DTD handler for this parser.
setDTDHandler(DTDHandler) - Method in class org.kepler.reporting.rio.fop.tools.AbstractObjectReader
 
setDuration(String) - Method in class org.kepler.util.WorkflowRunBuilder
 
setEcoGridServicesController(EcoGridServicesController) - Method in class org.ecoinformatics.seek.ecogrid.EcogridPreferencesTab
Method to set controller
setEditable() - Method in class org.sdm.spa.gui.DoubleShellTextAreaPanel
Set the associated text area editable (with a true argument) or not editable (with a false argument).
setEditable(boolean) - Method in class ptolemy.actor.gui.BrowserTableau
Make the tableau editable or uneditable.
setEditable(boolean) - Method in class ptolemy.actor.gui.ExternalTextTableau
Make the tableau editable or uneditable.
setEditable(boolean) - Method in class ptolemy.actor.gui.Tableau
Make the tableau editable or uneditable.
setEditable(boolean) - Method in class ptolemy.actor.gui.TextEditorTableau
Make the tableau editable or uneditable.
setEditable(boolean) - Method in class ptolemy.gui.ShellTextArea
Set the associated text area editable (with a true argument) or not editable (with a false argument).
setEditable(int) - Method in class ptolemy.plot.EditablePlot
Specify which dataset is editable.
setEditingColumn(int) - Method in class org.kepler.workflowrunmanager.gui.GroupableTableHeader
 
setEditingEnabled(boolean) - Method in class org.kepler.gui.lsid.LSIDViewer
 
setEditorPanel(PlotsEditorPanel) - Method in class org.kepler.plotting.PlotEditor
 
setEffigy(Effigy) - Method in class ptolemy.vergil.basic.GetDocumentationAction
Set the effigy to be used if the effigy is not evident from the model being edited.
setEmbedded(boolean) - Method in class ptolemy.actor.Director
With a false argument, force this director to behave as if it is a top-level director even if it is not.
setEnabled(boolean) - Method in class org.ecoinformatics.seek.ecogrid.SelectableDocumentType
Method to set icon enable status
setEnabled(boolean) - Method in interface org.ecoinformatics.seek.ecogrid.SelectableObjectInterface
Method to set icon enable or not
setEnabled(boolean) - Method in class org.ecoinformatics.seek.ecogrid.SelectableServiceName
Method to set icon enable status
setEnabled(boolean) - Method in class org.kepler.sms.gui.SemanticTypeTable
A hack to make the table turn "on" and "off" by enabling and disabling the buttons.
setEnabled(boolean) - Method in class org.kepler.workflowscheduler.gui.Schedule
Set the status of the schedule
setEnabled(boolean) - Method in class ptolemy.gui.Query.QueryColorChooser
Specify whether the entry is editable or not.
setEnabled(boolean) - Method in class ptolemy.gui.Query.QueryFileChooser
Specify whether the entry is editable or not.
setEnabled(String, boolean) - Method in class ptolemy.gui.Query
For line, display, check box, slider, radio button, or choice entries made, if the second argument is false, then it will be disabled.
setEnabled(boolean) - Method in class ptolemy.vergil.debugger.DebugController
Enable/disable debugging on the set of actors.
setEnd(int) - Method in class org.kepler.tagging.Range
 
setEndpoint(String) - Method in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreDataSource
Set the endpoint of this record.
setEndPoint(String) - Method in class org.ecoinformatics.seek.datasource.EcogridDataCacheItem
 
setEndPoint(String) - Method in class org.ecoinformatics.seek.ecogrid.EcoGridService
Set end point for this service
setEndpoint(String) - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.ResultRecord
Set the endpoint of this record.
setEndTime(String) - Method in class org.kepler.workflowscheduler.gui.Schedule
Set the end time of the schedule
setEndTimeFormat(String) - Method in class org.kepler.workflowscheduler.gui.Schedule
Set the format of the end time string
setEndTimeLabel(String) - Method in class org.kepler.workflowscheduler.gui.Schedule
Set the label for end time.
setEndTimeZoneID(String) - Method in class org.kepler.workflowscheduler.gui.Schedule
Set the end time zone id.
setEntity(Entity) - Method in class org.kepler.objectmanager.data.text.TextComplexFormatDataReader
 
setEntityIdentifier(String) - Method in class org.ecoinformatics.seek.datasource.EcogridDataCacheItem
Set an entity to describe the data cache
setEntityLibrary(DownloadableKAREntityLibrary) - Method in class org.kepler.gui.kar.DownloadKARFileAction
 
setEntityReference(String) - Method in class org.kepler.objectmanager.data.db.ForeignKey
Method to set referenced entity name
setEntityReference(String) - Method in class org.kepler.objectmanager.data.db.JoinConditionConstraint
Method to set referenced entity name
setEntityResolver(EntityResolver) - Method in class com.microstar.xml.driver.SAXDriver
Set the entity resolver for this parser.
setEntityResolver(EntityResolver) - Method in class org.kepler.reporting.rio.fop.tools.AbstractObjectReader
 
SETEQUALS - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
setError() - Method in class org.ecoinformatics.seek.datasource.DataSourceIcon
Set the icon to Error state
setErrorHandler(ErrorHandler) - Method in class com.microstar.xml.driver.SAXDriver
Set the error handler for this parser.
setErrorHandler(ErrorHandler) - Method in class org.kepler.reporting.rio.fop.tools.AbstractObjectReader
 
setErrorHandler(ErrorHandler) - Static method in class ptolemy.moml.MoMLParser
Set the error handler to handle parsing errors.
setErrorMsg(String) - Method in class org.sdm.spa.actors.transport.FileCopierBase.CopyResult
 
setErrorReported(boolean) - Method in class ptolemy.kernel.util.ChangeRequest
Call with a true argument to indicate that an error has been reported to the user.
seteValue(String) - Method in class org.kepler.bio.util.BlastTabularResult
 
setException(Throwable) - Method in class org.ptolemy.commons.FutureValue
Causes this future to report an ExecutionException with the given throwable as its cause, unless this Future has already been set or has been cancelled.
setExecId(KeplerLSID, Integer, boolean) - Method in class org.kepler.util.RemoteStoreRunsTracker
 
setExecId(String) - Method in class org.kepler.util.WorkflowRunBuilder
 
setExecLSID(String) - Method in class org.kepler.util.WorkflowRunBuilder
 
setExecutable(String, boolean, String) - Method in class org.kepler.job.Job
Set the executable for the job.
setExecuteCommands(ExecuteCommands) - Method in class ptolemy.vergil.actor.DocBuilder
Set the command executor, which can be either non-graphical or graphical.
setExecuteGraphicalActors(boolean) - Method in class org.kepler.provenance.RecordPlayer
Execute graphical actors in workflow.
setExecutionIdentifier(Object) - Method in class ptolemy.actor.Manager
Set the execution identifier object.
setExitCode(int) - Method in class org.sdm.spa.actors.transport.FileCopierBase.CopyResult
 
setExitOnTimeOut(boolean) - Method in class ptolemy.util.test.WatchDog
Determine whether the JVM will exit when the time interval has passed.
setExponent(int) - Method in class ptolemy.moml.unit.UnitTerm
Set the exponent.
setExportDTD(boolean) - Static method in class ptolemy.util.XSLTUtilities
Set the flag indicating whether to export DTD specification when transforming XML files.
setExportMode(boolean) - Method in class org.kepler.gui.kar.ImportModuleDependenciesAction
By default, dialogs describe and attempt to Open KAR.
setExpression(String) - Method in class org.kepler.moml.DependencyAttribute
set the value of this id
setExpression(String) - Method in class org.kepler.moml.NamedObjId
set the value of this id.
setExpression(KeplerLSID) - Method in class org.kepler.moml.NamedObjId
Helper method for setting the expression directly with a KeplerLSID object.
setExpression(String) - Method in class org.kepler.moml.PortAttribute
set the value of this id
setExpression(String) - Method in class org.kepler.sms.SemanticType
 
setExpression(String) - Method in class org.kepler.webview.server.WebViewId
Set the value of the id.
setExpression(String) - Method in class ptolemy.actor.parameters.PortParameter
Override the base class to record the persistent expression.
setExpression(String) - Method in class ptolemy.actor.parameters.SharedParameter
Override the base class to also set the expression of shared parameters.
setExpression(String) - Method in class ptolemy.actor.parameters.test.TestSharedParameter
Override the base class to also set the expression of shared parameters.
setExpression(String) - Method in class ptolemy.data.expr.Variable
Set the expression of this variable.
setExpression(String) - Method in class ptolemy.domains.modal.kernel.AbstractActionsAttribute
Set the action and notify the container that the action has changed by calling attributeChanged(), and notify any listeners that have been registered using addValueListener().
setExpression(String) - Method in class ptolemy.kernel.attributes.RequireVersion
Set the required version, check it against the currently executing version, and throw an exception if the executing version is older.
setExpression(String) - Method in class ptolemy.kernel.attributes.VersionAttribute
Set the value of the string attribute and notify the container of the value of this attribute by calling attributeChanged().
setExpression(String) - Method in class ptolemy.kernel.util.AbstractSettableAttribute
Set the value of this attribute to the specified expression.
setExpression(String) - Method in class ptolemy.kernel.util.ConfigurableAttribute
Set the value of the string attribute and notify the container of the value of this attribute by calling attributeChanged(), and notify any listeners that have been registered using addValueListener().
setExpression(String) - Method in class ptolemy.kernel.util.Location
Set the value of the attribute by giving some expression.
setExpression(String) - Method in interface ptolemy.kernel.util.Settable
Set the value of the attribute by giving some expression.
setExpression(String) - Method in class ptolemy.kernel.util.StringAttribute
Set the value of the string attribute and notify the container of the value of this attribute by calling attributeChanged().
setExpression(String) - Method in class ptolemy.moml.Documentation
Override the base class to remove this instance from its container if the argument is an empty string.
setExpression(String) - Method in class ptolemy.moml.unit.UnitAttribute
Set the expression.
setExpression(String) - Method in class ptolemy.vergil.actor.LayoutHint
Set the value of the attribute by giving some expression.
setExpression(String) - Method in class ptolemy.vergil.actor.lib.MonitorReceiverAttribute
Set the value of the attribute by giving some expression.
setExpression(String) - Method in class ptolemy.vergil.kernel.attributes.AttributeValueAttribute
Set the value of the attribute by giving some expression.
setExpressionCount - Variable in class ptolemy.actor.parameters.test.TestSharedParameter
 
setExpressionIfNotDefined(Port, String, String) - Static method in class ptolemy.actor.util.DFUtilities
If a variable with the given name does not exist, then create a variable with the given name and set the value of that variable to the specified value.
setExtensionListInDescription(boolean) - Method in class org.ecoinformatics.seek.querybuilder.DBFileFilter
Determines whether the extension list (.jpg, .gif, etc) should show up in the human readable mDescription.
setExtent(int, int) - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Sets the cursor's extent to the given column span and row span.
setExternalTMListener(TableModelListener) - Method in class org.ecoinformatics.seek.querybuilder.QBApp
 
setFeature(String, boolean) - Method in class com.microstar.xml.driver.SAXDriver
 
setFeature(String, boolean) - Method in class org.kepler.reporting.rio.fop.tools.AbstractObjectReader
 
setFieldDelimiter(String) - Method in class org.kepler.objectmanager.data.text.TextDelimitedDataFormat
 
setFieldName(DBSelectTableModelItem, Object) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelBase
Sets a field name, and notifies the model of data change
setFieldName(DBSelectTableModelItem, Object) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelStd
This takes the table name and field name and looks up the DBSelectTableModelItem from the cahced Model, so both UIs are working from the same data model item.
setFieldStartColumn(int) - Method in class org.kepler.objectmanager.data.text.TextWidthFixedDataFormat
Set field start column number
setFieldWidth(int) - Method in class org.kepler.objectmanager.data.text.TextWidthFixedDataFormat
Set field width
setFigure(Figure) - Method in class org.kepler.monitor.FigureUpdater
Sets the figure.
setFigure(Figure) - Method in class org.kepler.monitor.MonitorIcon
Sets the foreground figure for this icon.
setFigure(Object, Figure) - Method in class ptolemy.vergil.basic.BasicGraphController
Set the figure associated with the given semantic object, and if that semantic object is Settable, then set up a value listener so that if its value changes, then the valueChanged() method is invoked.
setFigureUpdater(FigureUpdater) - Method in class org.kepler.monitor.MonitorAttribute
 
setFile(File) - Method in class org.kepler.kar.KARCached
 
setFile(File) - Method in class org.kepler.kar.KARCacheError
 
setFile(File) - Method in class org.kepler.kar.SaveKAR
 
setFile(File) - Method in class org.kepler.objectmanager.cache.CacheContent
 
setFileLocation(int) - Method in class org.kepler.objectmanager.cache.DataCacheFileObject
Set the status of the file item
setFileName(String) - Method in class org.kepler.objectmanager.data.db.Entity
Sets the fileName.
setFileName(String) - Method in class ptolemy.gui.Query.QueryFileChooser
Set selected file name.
setFileOnDisk(File) - Method in class org.kepler.moml.FolderEntityLibrary
 
setFilePath(String) - Method in class org.kepler.gui.component.OpenCompositeAction
Set the path of a MoML file to be opened.
setFileSelectionMode(int) - Method in class ptolemy.gui.PtFileChooser
Set the file selection mode.
setFillColor(Color) - Method in class ptolemy.vergil.icon.ShapeIcon
Specify the fill color to use.
setFiringElement(Object) - Method in class ptolemy.graph.sched.Firing
Set the firing element associated with this firing.
setFolderModel(LinkedHashMap<String, TreeModel>) - Method in class org.kepler.objectmanager.cache.LocalRepositoryManager
 
setFolderToRefresh(File) - Method in class org.kepler.gui.kar.RefreshFolderAction
Explicitly set the folder that the action will open.
setFont(Font) - Method in class org.kepler.monitor.MonitorIcon
Sets the text font for this icon
setFont(Font) - Method in class ptolemy.plot.EPSGraphics
 
setFont(Font) - Method in class ptolemy.vergil.icon.TextIcon
Specify the font to use.
setForcedCleanUp(boolean) - Method in interface org.kepler.ssh.ExecInterface
Specify if killing of external processes (i.e. clean-up) after error or timeout is required.
setForcedCleanUp(boolean) - Method in class org.kepler.ssh.GsiSshExec
 
setForcedCleanUp(boolean) - Method in class org.kepler.ssh.LocalExec
Specify if killing of external processes (i.e. clean-up) after error or timeout is required.
setForcedCleanUp(boolean) - Method in class org.kepler.ssh.SshExec
Specify if killing of remote processes (i.e. clean-up) after error or timeout is required.
setForeground(Color) - Method in class ptolemy.plot.PlotBox
Set the foreground color.
setForeground(Object) - Method in class ptolemy.plot.PlotBox
Set the foreground color.
setForeground(Object) - Method in interface ptolemy.plot.PlotBoxInterface
Set the foreground color.
setForegroundColor(Color) - Method in class org.kepler.monitor.figure.ProgressBarFigure
 
setForegroundColor(Color) - Method in class org.kepler.monitor.MonitorIcon
Set the color of the text for this icon.
setForkServers(boolean) - Static method in class org.kepler.util.sql.HSQL
Set whether HSQL servers are run in a separate process.
setFormatString(String) - Method in class org.kepler.objectmanager.data.DateTimeDomain
 
setFormComponent(Component) - Method in class org.mlc.swing.layout.FormEditor
 
setFormComponent(Component) - Method in class ptolemy.actor.gui.run.PtolemyFormEditor
Specify the selected component.
setFrame(JFrame) - Method in class ptolemy.actor.gui.AbstractPlaceableActor
Specify the associated frame and set its properties (size, etc.)
setFrame(JFrame) - Method in class ptolemy.actor.gui.AbstractPlaceableJavaSE
Specify the associated frame and set its properties (size, etc.)
setFrame(JFrame) - Method in class ptolemy.actor.gui.PlotTableau
Set the top-level window associated with this tableau.
setFrame(JFrame) - Method in class ptolemy.actor.gui.Tableau
Set the top-level window associated with this tableau.
setFrame(JFrame) - Method in class ptolemy.actor.lib.gui.MatrixViewer
Specify the associated frame and set its properties (size, etc.)
setFrame(Object) - Method in class ptolemy.actor.lib.gui.PlotterBase
Specify the associated frame and set its properties (size, etc.)
setFrame(Object) - Method in interface ptolemy.actor.lib.gui.PlotterBaseInterface
Set the frame of the plotter.
setFrame(Object) - Method in class ptolemy.actor.lib.gui.PlotterBaseJavaSE
Set the frame of the plotter.
setFrame(Object) - Method in interface ptolemy.actor.lib.image.ImageDisplayInterface
Set the frame of the image.
setFrame(Object) - Method in class ptolemy.actor.lib.image.ImageDisplayJavaSE
Set the frame of the image.
setFrame(BasicGraphFrame) - Method in class ptolemy.vergil.basic.BasicGraphController
Set the graph frame.
setFrame(JFrame) - Method in class ptolemy.vergil.tree.TreeTableau
Set the top-level window associated with this tableau.
setFsmTransitionParameter(FSMTransitionParameter) - Method in class ptolemy.domains.modal.kernel.Transition
Set the FSMTransitionParameter.
setFullDomain(String) - Method in class org.kepler.authentication.Domain
 
setGapOpenings(int) - Method in class org.kepler.bio.util.BlastTabularResult
 
setGenerateForDeprecated(boolean) - Static method in class org.kepler.kar.KarDoclet
Set if documentation will be generated for deprecated classes.
setGraphName(String) - Method in class org.kepler.plotting.Plot
 
setGrid(boolean) - Method in class ptolemy.plot.PlotBox
Control whether the grid is drawn.
setGrid(boolean) - Method in interface ptolemy.plot.PlotBoxInterface
Control whether the grid is drawn.
setGridColor(Color) - Method in class com.jgoodies.forms.debug.FormDebugPanel
Sets the debug grid's color.
setGridColor(Color) - Method in class org.mlc.swing.layout.FormDebugPanel
Sets the debug grid's color.
setGuardExpression(String) - Method in class ptolemy.domains.modal.kernel.Transition
Set the guard expression.
setHAlignment(CellConstraints.Alignment) - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Sets the horizontal alignment.
setHandler(XmlHandler) - Method in class com.microstar.xml.XmlParser
Set the handler that will receive parsing events.
setHandler(String) - Method in class org.kepler.kar.KAREntry
 
setHasGZipDataFile(boolean) - Method in class org.kepler.objectmanager.data.db.Entity
Method to set if the data file is gzip
setHasReportLayout(boolean) - Static method in class org.kepler.workflowscheduler.gui.SchedulerAbstractAction
Set true if the workflow associated with action has a report layout.
setHasTarDataFile(boolean) - Method in class org.kepler.objectmanager.data.db.Entity
Method to set if this has a tar data file
setHasZipDataFile(boolean) - Method in class org.kepler.objectmanager.data.db.Entity
Method to set if the data file is zip file
setHead(Object, Object) - Method in class ptolemy.vergil.actor.ActorGraphModel.LinkModel
Connect the given edge to the given head node.
setHead(Object) - Method in class ptolemy.vergil.kernel.Link
Set the head of this link.
setHead(Object, Object) - Method in class ptolemy.vergil.modal.FSMGraphModel.ArcModel
Connect the given edge to the given head node.
setHeaderEditable(boolean) - Method in class org.kepler.workflowrunmanager.gui.ColumnGroup
 
setHeaderEditor(TableCellEditor) - Method in class org.kepler.workflowrunmanager.gui.ColumnGroup
 
setHeaderGraphic(String) - Method in class org.kepler.reporting.roml.ReportLayout
 
setHeaderRenderer(TableCellRenderer) - Method in class org.kepler.workflowrunmanager.gui.ColumnGroup
Set the TableCellRenderer for this ColumnGroup.
setHeaderValue(Object) - Method in class org.kepler.workflowrunmanager.gui.ColumnGroup
 
setHighQualityThreshold(Object) - Method in class org.kepler.monitor.figure.QualityFigure
Set the high quality threshold for entity being monitored
setHistoryCapacity(int) - Method in class ptolemy.actor.QueueReceiver
Set the capacity of the history queue.
setHistoryCapacity(int) - Method in class ptolemy.actor.util.FIFOQueue
Set the capacity of the history queue.
setHistoryCapacity(int) - Method in class ptolemy.domains.sdf.kernel.ArrayFIFOQueue
Set the capacity of the history queue.
setHistoryCapacity(int) - Method in class ptolemy.domains.sdf.kernel.SDFReceiver
Set the capacity of the history queue.
setHost(String) - Method in class org.sdm.spa.actors.transport.vo.ConnectionDetails
 
setHostId(String) - Method in class org.kepler.util.WorkflowRunBuilder
 
setIcon(ImageIcon) - Method in class org.kepler.reporting.rio.Item
 
setIconLoader(IconLoader) - Static method in class ptolemy.moml.MoMLParser
Set the icon loader for all MoMLParsers.
setIconText(String) - Method in class ptolemy.vergil.icon.TextIcon
Specify the text to display in the icon.
setId(int) - Method in class org.ecoinformatics.seek.querybuilder.DBQueryDefTable
Sets the Id
setId(String) - Method in class org.kepler.objectmanager.ActorMetadata
set the id
setId(String) - Method in class org.kepler.objectmanager.data.DataObjectDescription
Set the identifier for this data item.
setId(String) - Method in class org.kepler.objectmanager.data.db.AttributeList
 
setIdentity(Float) - Method in class org.kepler.bio.util.BlastTabularResult
 
setIfNotDefined(Port, String, int) - Static method in class ptolemy.actor.util.DFUtilities
If a variable with the given name does not exist, then create a variable with the given name and set the value of that variable to the specified value.
setImage(ImageToken) - Method in class ptolemy.actor.gui.ImageTokenEffigy
Specify the image represented by this effigy.
setImage(Image) - Method in class ptolemy.media.Picture
Specify the java.awt.Image representation of the image.
setImage(int[]) - Method in class ptolemy.media.Picture
Specify the packed ARGB representation of the image.
setImage(Image) - Method in class ptolemy.vergil.icon.ImageIcon
Specify an image to display.
setImpClassName(String) - Method in class org.kepler.hadoop.util.DDPPatternActorUtil
 
setImportedKARRunLSID(String, KeplerLSID, boolean) - Method in class org.kepler.util.RemoteStoreRunsTracker
Set importedKARRunLSID.
setImpulses(boolean) - Method in class ptolemy.plot.Plot
If the argument is true, then a line will be drawn from any plotted point down to the x axis.
setImpulses(boolean, int) - Method in class ptolemy.plot.Plot
If the first argument is true, then a line will be drawn from any plotted point in the specified dataset down to the x axis.
setImpulses(boolean) - Method in interface ptolemy.plot.PlotInterface
If the argument is true, then a line will be drawn from any plotted point down to the x axis.
setImpulses(boolean, int) - Method in interface ptolemy.plot.PlotInterface
If the first argument is true, then a line will be drawn from any plotted point in the specified dataset down to the x axis.
setIncludeInSave(boolean) - Method in class org.kepler.objectmanager.repository.Repository
Set the repository to be included in saving process or not
setIncludeInSearch(boolean) - Method in class org.kepler.objectmanager.repository.Repository
 
setIndeterminate(boolean) - Method in class org.kepler.monitor.figure.ProgressBarFigure
Set the indeterminate flag of this progress bar figure.
setIndex(int) - Method in class ptolemy.actor.sched.FixedPointDirector
Set the superdense time index.
setIndex(int) - Method in interface ptolemy.actor.SuperdenseTimeDirector
Set the superdense time index.
setIndex(int) - Method in class ptolemy.domains.de.kernel.DEDirector
Set the superdense time index.
setIndex(int) - Method in class ptolemy.domains.modal.kernel.FSMDirector
Set the superdense time index by delegating to the directors of the refinements of the current state, if any.
setIndexes(int[]) - Method in class ptolemy.math.Interpolation
Set the reference indexes.
setIndexFile(File) - Method in class org.kepler.sms.util.OntologyConfiguration
 
setInfo(Vector) - Method in class org.kepler.objectmanager.data.EnumeratedDomain
 
setInitializer(ActorModuleInitializer.Initializer) - Static method in class ptolemy.actor.injection.ActorModuleInitializer
Set the initializer.
setInLibrary(NamedOntModel, boolean) - Method in class org.kepler.sms.OntologyCatalog
 
setInLibrary(boolean) - Method in class org.kepler.sms.OntologyRow
 
setInput(Token, Token, Token) - Method in class org.kepler.ddp.actor.pattern.stub.CoGroupInput
Set the key and values from both inputs.
setInput(Token, Token, Token, Token) - Method in class org.kepler.ddp.actor.pattern.stub.CrossInput
Set the key and value from both inputs.
setInput(Token, Token) - Method in class org.kepler.ddp.actor.pattern.stub.MapInput
Set the key and value to write to workflow.
setInput(Token, Token, Token) - Method in class org.kepler.ddp.actor.pattern.stub.MatchInput
Set the key and value from both inputs.
setInput(Token, Token) - Method in class org.kepler.ddp.actor.pattern.stub.ReduceInput
Set the input and values.
setInput(Operator) - Method in class org.kepler.spark.operator.Operator
Set the (first) input operator.
setInput(int, Operator) - Method in class org.kepler.spark.operator.Operator
Set the input operator at an index.
setInput(boolean) - Method in class ptolemy.actor.IOPort
If the argument is true, make the port an input port.
setInput(boolean) - Method in class ptolemy.actor.lib.hoc.MirrorPort
Override the base class to also set the associated port, if there is one.
setInput(boolean) - Method in class ptolemy.actor.lib.hoc.MultiCompositePort
If the argument is true, make the port an input port.
setInput(boolean) - Method in class ptolemy.actor.lib.hoc.RefinementPort
If the argument is true, make the port an input port.
setInput(boolean) - Method in class ptolemy.actor.parameters.ParameterMirrorPort
Override the base class to also set the associated port, if there is one.
setInput(boolean) - Method in class ptolemy.actor.PublisherPort
Override the base class to refuse to accept setting to be an input.
setInput(boolean) - Method in class ptolemy.actor.SubscriberPort
Override the base class to only accept setting to be an input.
setInput(boolean) - Method in class ptolemy.domains.modal.modal.ModalPort
If the argument is true, make the port an input port.
setInput(boolean) - Method in class ptolemy.domains.modal.modal.ModalRefinementPort
If the argument is true, make the port an input port.
setInput(boolean) - Method in class ptolemy.domains.modal.modal.RefinementPort
If the argument is true, make the port an input port.
setInput(boolean) - Method in class ptolemy.domains.modal.modal.TransitionRefinementPort
If the argument is true, make the port an input port.
setInput(boolean) - Method in class ptolemy.domains.sdf.kernel.SDFIOPort
Deprecated.
Set whether or not this port is an input.
setInputFile(String, boolean) - Method in class org.kepler.job.Job
Set an input file for job.
setInputStream(InputStream) - Method in class org.kepler.util.DelimitedReader
Method to set up data stream as source
setInsertionOnly(boolean) - Method in class org.kepler.tagging.TagReloadType.SearchStringChange
 
setInsertionUI(TagBarInsertionUI) - Method in class org.kepler.tagging.gui.TagBarUI
 
setInsets(Insets) - Method in class ptolemy.gui.Query
Set the insets for the GridBagLayout manager used to layout the components.
setInTagBar(NamedOntModel, boolean) - Method in class org.kepler.sms.OntologyCatalog
 
setInTagBar(boolean) - Method in class org.kepler.sms.OntologyRow
 
setInterpreter(ShellInterpreter) - Method in class org.sdm.spa.gui.DoubleShellTextAreaPanel
Set the interpreter.
setInterpreter(ShellInterpreter) - Method in class ptolemy.gui.ShellTextArea
Set the interpreter.
setInterpreter(ShellInterpreter) - Method in class ptolemy.gui.UserDialog
Set the interpreter.
setInterval(String) - Method in class org.kepler.workflowscheduler.gui.Schedule
Set the interval of the schedule
setIntervalUnit(String) - Method in class org.kepler.workflowscheduler.gui.Schedule
Set the interval unit
setIsAdv(boolean) - Method in class org.ecoinformatics.seek.querybuilder.DBQueryDef
Sets the hint as to whether it is an advanced query
setIsChanged(boolean) - Method in class org.ecoinformatics.seek.querybuilder.QBApp
 
setIsDisplayed(int, boolean) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelBase
Sets the Display cell for a row
setIsImageEntity(boolean) - Method in class org.kepler.objectmanager.data.db.Entity
Set if this is a Image entity
setIsRemovable(boolean) - Method in class org.kepler.sms.RemovableSemanticType
 
setIsSelected(boolean) - Method in class org.ecoinformatics.seek.ecogrid.SelectableDocumentType
Method to set selected status
setIsSelected(boolean) - Method in interface org.ecoinformatics.seek.ecogrid.SelectableObjectInterface
Method to set selected status
setIsSelected(boolean) - Method in class org.ecoinformatics.seek.ecogrid.SelectableServiceName
Method to set selected status
setIsSelected(boolean) - Method in class org.ecoinformatics.seek.querybuilder.DBTableJoinItem
 
setIsTarFile(boolean) - Method in class org.ecoinformatics.seek.datasource.EcogridDataCacheItem
Set this item is tar file or not
setItem(Object) - Method in class org.kepler.tagging.gui.AutoCompleteComboBox
 
setItemProperties(ItemProperties) - Method in class org.kepler.reporting.rio.Item
 
setIterationCount(int) - Method in class ptolemy.actor.sched.ScheduleElement
Set the iteration count for this schedule.
setIterationCount(int) - Method in class ptolemy.graph.sched.ScheduleElement
Set the iteration count for this schedule.
setJavaPropertiesAndCopyModuleDirectories() - Static method in class org.kepler.Kepler
Set Kepler java properties and copy the module directories into KeplerData/.
setJGraph(JGraph) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Set the JGraph instance that this view uses to represent the ptolemy model.
setJobConfig(String, String, String, String, String, String, String, String, String, String, String, String, String, String, String, String[], String[], String) - Method in class org.geon.LidarJobConfig
 
setJobConfig(String, String, String, String, String, String, String, String, String, String, String, String, String, String, String[], String[], String) - Method in class org.geon.LidarJobConfig
 
setJobDatasetPath(String, String) - Method in class org.geon.LidarJobConfig
 
setJobDescription(String, String) - Method in class org.geon.LidarJobConfig
 
setJobDescription(String, String, String) - Method in class org.geon.LidarJobDB
Enter a job description
setJobId(String) - Method in class org.geon.LidarJobConfig
 
setJobId() - Method in class org.sdm.spa.SoaplabServiceClient
To create a new job in the client.
setJobStatus(String) - Method in class org.geon.LidarJobConfig
 
setJobStatus(String, String, String) - Method in class org.geon.LidarJobDB
 
setJoins(Vector) - Method in class org.ecoinformatics.seek.querybuilder.DBQueryDef
Sets a vector of DBSelectTableModelItem "pairs", assumes that the vector always holds an even number of elements, one left and right in pairs
setJoins(DBTableJoin) - Method in class org.ecoinformatics.seek.querybuilder.DBTableFrame
Uses to set the "Joins" data structure
setJoins(DBTableJoin) - Method in class org.ecoinformatics.seek.querybuilder.DBTableList
Sets the Joins object (TODO need to make a listener instead)
setJSCopier(NamedObj) - Method in class ptolemy.vergil.basic.ExportParameters
Specify the composite entity responsible for copying JavaScript and related files.
setKarCached(KARCached) - Method in class org.kepler.kar.KARCacheContent
 
setKARFile(KARFile) - Method in class org.kepler.gui.kar.KAREffigy
Set the KAR file.
setKarFile(File) - Method in class org.kepler.kar.KARBuilder
 
setKarFile(KARFile) - Method in class org.kepler.kar.karxml.KarXmlGenerator
Set the KARFile object to generate the karxml from.
setKarFile(File) - Method in class org.kepler.moml.KAREntityLibrary
 
setKarFile(File) - Method in class org.kepler.moml.KARErrorEntityLibrary
 
setKARFileName(String, String, boolean) - Method in class org.kepler.util.RemoteStoreRunsTracker
 
setKARFileName(String) - Method in class org.kepler.util.WorkflowRunBuilder
 
setKARFileSize(String, Long, boolean) - Method in class org.kepler.util.RemoteStoreRunsTracker
 
setKARFileSize(String) - Method in class org.kepler.util.WorkflowRunBuilder
 
setKarLSID(KeplerLSID) - Method in class org.kepler.kar.KARBuilder
 
setKARLSID(String, KeplerLSID, boolean) - Method in class org.kepler.util.RemoteStoreRunsTracker
 
setKARLSID(String) - Method in class org.kepler.util.WorkflowRunBuilder
 
setKarLSID(String) - Method in class org.kepler.workflowscheduler.gui.Schedule
Set the kar file id
setKarLSID(String) - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerPanel
Set the id of the kar file
setKarName(String) - Method in class org.kepler.objectmanager.repository.KARDownloader
 
setKarPath(String) - Method in class org.kepler.objectmanager.repository.KARDownloader
 
setKARVersionSpecificInfo(String) - Method in class org.kepler.kar.karxml.KarXmlGenerator
Set _namespace, _schemaUrl, and _schemaLocation for KAR version
setKarXml(KarXml) - Method in class org.kepler.gui.kar.ImportModuleDependenciesAction
 
setKarXml(KarXml) - Method in class org.kepler.moml.RemoteKARErrorEntityLibrary
 
setKey(WritableComparable) - Method in class org.kepler.hadoop.io.KeyValuePair
 
setKeys(String[]) - Method in class org.kepler.objectmanager.data.db.ForeignKey
Method to set keys
setKeys(String[]) - Method in class org.kepler.objectmanager.data.db.JoinConditionConstraint
Method to set keys
setKeys(String[]) - Method in class org.kepler.objectmanager.data.db.NotNullConstraint
Method to set keys
setKeys(String[]) - Method in class org.kepler.objectmanager.data.db.PrimaryKey
Method to set keys in constraint
setKeys(String[]) - Method in class org.kepler.objectmanager.data.db.UniqueKey
Method to set keys in constraint
setKeyValue(String, String) - Method in class org.kepler.cloudsharing.util.WorkflowResults
Set a key value for the collection.
setKeyValueTypes(String, String) - Method in class org.kepler.hadoop.util.DDPPatternActorUtil
 
setLabel(String) - Method in class org.ecoinformatics.seek.ecogrid.DocumentType
Method to set a readable name for this document type
setLabel(String) - Method in class org.kepler.sms.SemanticType
 
setLabel(String) - Method in class ptolemy.vergil.toolbox.GraphicElement
Set the label for this graphic element.
setLabelFont(String) - Method in class ptolemy.plot.PlotBox
Set the label font, which is used for axis labels and legend labels.
setLabelFont(String) - Method in interface ptolemy.plot.PlotBoxInterface
Set the label font, which is used for axis labels and legend labels.
setLabelLocation(Point2D.Double) - Method in class ptolemy.vergil.actor.LayoutHint.LayoutHintItem
Sets the position a label should be placed at.
setLastChosenTransition(Transition) - Method in class ptolemy.domains.modal.kernel.FSMActor
Deprecated.
Use addChosenTransition(State, Transition)
setLastDirectory(File) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Set the directory that was last accessed by this window.
setLastEvent(boolean) - Method in class org.kepler.tagging.TagEvent
 
setLayout(String, Container) - Method in class org.mlc.swing.layout.LayoutConstraintsManager
This method will build a layout from the xml file based on the name and call setLayout on the container passed in.
setLayoutHintItem(NamedObj, NamedObj, double[], Point2D.Double) - Method in class ptolemy.vergil.actor.LayoutHint
Set a LayoutHint.LayoutHintItem for a link which is specified by its head and tail, i.e.
setLayoutInProgress(boolean) - Static method in class ptolemy.vergil.actor.KielerLayoutConnector
Notifies layout connections that a layout is in progress, which stops them from deciding to remove layout hints from relations.
setLayoutInProgress(boolean) - Static method in class ptolemy.vergil.modal.KielerLayoutArcConnector
Notifies layout connections that a layout is in progress, which stops them from deciding to remove layout hints from relations.
setLazy(boolean) - Method in class ptolemy.data.expr.Variable
Specify whether this variable is to be lazy.
setLeadingColumnOffset(int) - Method in class com.jgoodies.forms.builder.DefaultFormBuilder
Sets the offset of the leading column, often 0 or 1.
setLeft(int) - Method in class org.kepler.objectmanager.library.LibItem
 
setLeftToRight(boolean) - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Sets the form fill direction to left-to-right or right-to-left.
setLeftToRightButtonOrder(boolean) - Method in class com.jgoodies.forms.builder.ButtonBarBuilder
Sets the order for button sequences to either left to right, or right to left.
setLenient(boolean) - Method in class org.kepler.util.DelimitedReader
 
setLevel(int) - Method in class org.kepler.objectmanager.library.LibItem
 
setLhs(UnitExpr) - Method in class ptolemy.moml.unit.UnitConstraint
 
setLibrary(CompositeEntity) - Method in class ptolemy.moml.LibraryAttribute
Specify the library, overriding any library that might have been or might later be specified by a call to configure().
setLiid(Integer) - Method in class org.kepler.gui.component.ToggleLsidAction
 
setLiid(int) - Method in class org.kepler.objectmanager.library.LibItem
 
setLine(String, String) - Method in class ptolemy.gui.Query
Set the displayed text of an item that has been added using addLine.
setLineColor(Color) - Method in class ptolemy.vergil.icon.ShapeIcon
Specify the line color to use.
setLineGapSize(ConstantSize) - Method in class com.jgoodies.forms.builder.DefaultFormBuilder
Sets the size of gaps between component lines using the given constant size.
setLineNumber(long) - Method in class org.kepler.objectmanager.data.text.TextDelimitedDataFormat
 
setLineNumber(int) - Method in class org.kepler.objectmanager.data.text.TextWidthFixedDataFormat
Set line number
setLineStyle(String, int) - Method in class ptolemy.plot.Plot
Set the style of the lines joining marks.
setLineStyle(String, int) - Method in interface ptolemy.plot.PlotInterface
Set the style of the lines joining marks.
setLineStyles(boolean) - Method in class ptolemy.plot.Plot
If the argument is true, draw the data sets with different line styles.
setLineStyles(boolean) - Method in interface ptolemy.plot.PlotInterface
If the argument is true, draw the data sets with different line styles.
setLineWidth(float) - Method in class ptolemy.vergil.icon.ShapeIcon
Specify the line width to use.
setLinkDomainObjectVisible(NamedObj) - Method in class org.kepler.sms.gui.SemanticLinkTable
Causes the given object to become visible in the given display.
setLinked(boolean) - Method in class org.ecoinformatics.seek.querybuilder.DBTableField
Set whether it is a link or not
setLinkedVertex(Vertex) - Method in class ptolemy.moml.Vertex
Set the other vertex to which there is a path from this vertex.
setListeners(List) - Method in class ptolemy.kernel.util.ChangeRequest
Specify a list of listeners to be notified when changes are successfully executed, or when an attempt to execute them results in an exception.
setLocal(boolean) - Method in class org.kepler.sms.NamedOntModel
 
setLocal(boolean) - Method in class org.kepler.sms.OntologyRow
 
setLocale(Locale) - Method in class com.microstar.xml.driver.SAXDriver
Set the locale.
setLocalKarFilePath(String) - Method in class org.kepler.workflowscheduler.gui.LocalRemoteWorkflowMap
 
setLocalRepoName(File, String) - Method in class org.kepler.objectmanager.cache.LocalRepositoryManager
Change the name of a local repository.
setLocalSaveRepo(File) - Method in class org.kepler.objectmanager.cache.LocalRepositoryManager
 
setLocalTime(Time) - Method in class ptolemy.actor.LocalClock
Set local time without committing.
setLocalWorkdir(String) - Method in class org.kepler.job.Job
Set and create the local working directory.
setLocalWorkflow(String, String, String) - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerParentPanel
Set a local workflow on this panel for scheduling
setLocation(double, double) - Method in class org.kepler.gis.actor.pylaski.PylaskiUtilities.Settings
Sets the location to a single coordinate.
setLocation(double, double, double) - Method in class org.kepler.gis.actor.pylaski.PylaskiUtilities.Settings
Sets the location to within a radius around a single coordinate.
setLocation(double, double, double, double) - Method in class org.kepler.gis.actor.pylaski.PylaskiUtilities.Settings
Sets the location to within a rectangle.
setLocation(Window) - Method in class ptolemy.actor.gui.LocationAttribute
Set the location of the specified component to match the current value of the attribute.
setLocation(double[]) - Method in class ptolemy.actor.parameters.LocationParameter
Set the center location in some Cartesian coordinate system, and notify the container and any value listeners of the new location.
setLocation(double[]) - Method in interface ptolemy.kernel.util.Locatable
Set the location in some cartesian coordinate system, and notify the container and any value listeners of the new location.
setLocation(double[]) - Method in class ptolemy.kernel.util.Location
Set the center location in some cartesian coordinate system, and notify the container and any value listeners of the new location.
setLocation(Object, double[]) - Method in class ptolemy.vergil.basic.LocatableNodeController
Set the desired location of this node.
setLocation(double[]) - Method in class ptolemy.vergil.basic.RelativeLocation
Set the location in some cartesian coordinate system, and notify the container and any value listeners of the new location.
setLocked(boolean) - Method in class org.kepler.reporting.roml.ReportLayout
 
setLookAndFeel() - Static method in class org.kepler.gui.StaticGUIResources
Set the look & feel - first check if a user-specified L&F exists in the file whose path is obtained from StaticResources.UI_SETTINGS_BUNDLE.
setLowQualityThreshold(Object) - Method in class org.kepler.monitor.figure.QualityFigure
Set the low quality threshold for entity being monitored
setLSID(KeplerLSID) - Method in class org.kepler.gui.RemoveCustomKeplerDocumentationAction
 
setLsid(KeplerLSID) - Method in class org.kepler.kar.KARCached
 
setLsid(KeplerLSID) - Method in class org.kepler.kar.KARCacheError
 
setLSID(KeplerLSID) - Method in class org.kepler.kar.KAREntry
 
setLSID(KeplerLSID) - Method in class org.kepler.kar.KARFile
 
setLsid(KeplerLSID) - Method in class org.kepler.moml.KeplerActorMetadata
 
setLsid(KeplerLSID) - Method in class org.kepler.objectmanager.cache.CacheContent
 
setLSID(KeplerLSID) - Method in class org.kepler.objectmanager.cache.CacheObject
set the lsid
setLSID(KeplerLSID) - Method in interface org.kepler.objectmanager.cache.CacheObjectInterface
set the lsid
setLsid(KeplerLSID) - Method in class org.kepler.objectmanager.library.LibItem
 
setLsid(KeplerLSID) - Method in class org.kepler.reporting.roml.ReportLayout
 
setLsidToOpen(KeplerLSID) - Method in class org.kepler.gui.component.OpenCompositeAction
 
setLsidToView(KeplerLSID) - Method in class org.kepler.gui.lsid.LibLsidViewerAction
 
setLsidToView(KeplerLSID) - Method in class org.kepler.gui.ShowDocumentationAction
 
setMajorVersion(int) - Method in class org.kepler.util.sql.Schema
Set the major version.
setMalformed(boolean) - Method in class org.kepler.util.WorkflowRunBuilder
 
setManager(Manager) - Method in class ptolemy.actor.CompositeActor
Set the Manager for execution of this CompositeActor.
setManifest(KARManifest) - Method in class org.kepler.kar.KARBuilder
 
setManualUrl(String) - Method in class org.kepler.sms.NamedOntClass
 
setMapKARToCurrentFrame(boolean) - Method in class org.kepler.gui.kar.ExportArchiveAction
Set true when this KAR should not be mapped to this JFrame.
setMarksStyle(String) - Method in class ptolemy.plot.Plot
Set the marks style to "none", "points", "dots", or "various".
setMarksStyle(String, int) - Method in class ptolemy.plot.Plot
Set the marks style to "none", "points", "dots", "various", or "pixels" for the specified dataset.
setMarksStyle(String) - Method in interface ptolemy.plot.PlotInterface
Set the marks style to "none", "points", "dots", or "various".
setMarksStyle(String, int) - Method in interface ptolemy.plot.PlotInterface
Set the marks style to "none", "points", "dots", "various", or "pixels" for the specified dataset.
setMask(String[]) - Method in class org.kepler.io.DirectoryListing
(Re)set the file mask.
setMaster(boolean) - Method in class ptolemy.actor.gui.Tableau
Specify whether the window associated with this tableau is a master, which means that if that window is closed, then all windows associated with the model are closed.
setMaximum(int) - Method in class org.kepler.monitor.figure.ProgressBarFigure
Sets the maximum value, which is meaningful only for a determinate progress bar.
setMaxmum(double) - Method in class org.kepler.objectmanager.data.DateTimeDomain
 
setMaxmum(Double) - Method in class org.kepler.objectmanager.data.NumericDomain
 
setMemento(SemanticTypeManagerMemento) - Method in class org.kepler.sms.SemanticTypeManager
Set this managers state to the state saved by the memento.
setMergeWithPreviousUndo(boolean) - Method in class ptolemy.moml.MoMLChangeRequest
Set whether or not the undo from this change should be merged with the previous undoable change.
setMessage(String) - Method in class ptolemy.gui.ComponentDialog
Change the message that was specified in the constructor to read as specified.
setMessage(String) - Method in class ptolemy.gui.Query
Specify a message to be displayed above the query.
setMessage(String) - Method in class ptolemy.gui.StatusBar
Set the message displayed in the status bar.
setMessageHandler(MessageHandler) - Static method in class ptolemy.util.MessageHandler
Set the message handler instance that is used by the static methods in this class.
setMetadataSepcificationClassName(String) - Method in class org.ecoinformatics.seek.ecogrid.DocumentType
Method to set metadata specification class name
setMinimum(int) - Method in class org.kepler.monitor.figure.ProgressBarFigure
Sets the minimum value, which is meaningful only for a determinate progress bar.
setMinimum(double) - Method in class org.kepler.objectmanager.data.DateTimeDomain
 
setMinimum(Double) - Method in class org.kepler.objectmanager.data.NumericDomain
 
setMinimumConsensusLength(int) - Method in class org.sdm.spa.actors.piw.viz.SequenceCollection
 
setMinorVersion(int) - Method in class org.kepler.util.sql.Schema
Set the minor version.
setMirrorDisable(boolean) - Method in class ptolemy.actor.lib.hoc.Refinement
Control whether adding a port should be mirrored in the modal model and the mode controller.
setMirrorDisable(boolean) - Method in class ptolemy.actor.lib.hoc.RefinementPort
Control whether any change should be mirrored in the modal model, mode controller, and refinements.
setMirrorDisable(int) - Method in interface ptolemy.domains.modal.kernel.RefinementActor
Control whether adding a port should be mirrored in the modal model and the mode controller.
setMirrorDisable(int) - Method in class ptolemy.domains.modal.modal.ModalController
Control whether adding a port should be mirrored in the modal model and refinements.
setMirrorDisable(int) - Method in class ptolemy.domains.modal.modal.ModalRefinement
Control whether adding a port should be mirrored in the modal model and refinements.
setMirrorDisable(int) - Method in class ptolemy.domains.modal.modal.Refinement
Control whether adding a port should be mirrored in the modal model and the mode controller.
setMirrorDisable(boolean) - Method in class ptolemy.domains.modal.modal.RefinementPort
Control whether any change should be mirrored in the modal model, mode controller, and refinements.
setMismatches(int) - Method in class org.kepler.bio.util.BlastTabularResult
 
setMissingValueCode(Vector) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
Method to return the vector which store the missing value code.
setMissingValueCode(Vector) - Method in class org.ecoinformatics.seek.querybuilder.DBTableField
Method to return the vector which store the missing value code.
setMissingValueCode(Vector) - Method in class org.kepler.objectmanager.data.DataObjectDescription
Method to return the vector which store the missing value code.
setMissingValueCode(Vector) - Method in interface org.kepler.objectmanager.data.db.DSTableFieldIFace
Method to set up missing value code for this field
setMissingValueCode(Vector) - Method in class org.kepler.objectmanager.data.db.DSTableKeyDef
Method to return the vector which store the missing value code.
setModel(DBSelectTableModelBase) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableUIBase
Set the data model into the table
setModel(NamedObj) - Method in class org.kepler.gui.KeplerGraphFrame
Set the model for this frame.
setModel(NamedOntModel) - Method in class org.kepler.sms.OntologyRow
 
setModel(NamedOntModel) - Method in class org.kepler.tagging.TagReloadType.TagCacheChange
 
setModel(NamedObj) - Method in class org.kepler.workflow.Workflow
 
setModel(CompositeActor) - Method in class ptolemy.actor.gui.ModelFrame
Set the associated model.
setModel(CompositeActor) - Method in class ptolemy.actor.gui.ModelPane
Set the associated model and add a query box with its top-level parameters, and those of its director, if it has one.
setModel(NamedObj) - Method in class ptolemy.actor.gui.PtolemyEffigy
Set the ptolemy model that this is an effigy of.
setModel(NamedObj) - Method in class ptolemy.actor.gui.PtolemyFrame
Set the associated model.
setModel(CompositeEntity) - Method in class ptolemy.vergil.basic.layout.kieler.KielerLayout
Set the Ptolemy Model that contains the graph that is to be layouted.
setModelContainer(ExceptionManager) - Method in class ptolemy.actor.lib.ExceptionManagerModel
Set the exception manager that contains this model.
setModelErrorHandler(ModelErrorHandler) - Method in class ptolemy.kernel.util.NamedObj
Set the model error handler.
setModelListener(TableModelListener) - Method in class org.ecoinformatics.seek.querybuilder.DBWherePanel
Set a single model listener
setModelParameter(NamedObj, String, String) - Static method in class org.kepler.util.ParseWorkflowUtil
Set a parameter value in a workflow.
setModelTime(Time) - Method in class ptolemy.actor.Director
Set a new value to the current time of the model.
setModelTime(Time) - Method in class ptolemy.domains.continuous.kernel.ContinuousDirector
Set a new value to the current time of the model.
setModelTime(Time) - Method in class ptolemy.domains.pn.kernel.TimedPNDirector
Set a new value to the current time of the model, where the new time must be no earlier than the current time.
setModifiable(boolean) - Method in class ptolemy.actor.gui.Effigy
If the argument is false, the specify that that the model is not modifiable, even if the URI associated with this effigy is writable.
setModifiable(boolean) - Method in class ptolemy.actor.gui.ExternalTextEffigy
Pass the modifiable flag onto the external text editor.
setModified(TableauFrame) - Method in class org.kepler.reporting.roml.ReportLayout
Mark TableauFrame modified so user will be prompted to save, and increment ReportLayout LSID.
setModified(boolean) - Method in class ptolemy.actor.gui.Effigy
Record whether the data associated with this effigy has been modified since it was first read or last saved.
setModified(boolean) - Method in class ptolemy.actor.gui.TableauFrame
Record whether the data associated with this window has been modified since it was first read or last saved.
setModified(boolean) - Method in class ptolemy.actor.gui.TextEffigy
 
setModified(boolean) - Method in class ptolemy.gui.Top
Record whether the data associated with this window has been modified since it was first read or last saved.
setModified(boolean) - Static method in class ptolemy.moml.MoMLParser
Record whether the parsing of the moml modified the data.
setModuleDependencies(String) - Method in class org.kepler.util.WorkflowRunBuilder
 
setMoMLFilters(List) - Static method in class ptolemy.moml.MoMLParser
Set the list of MoMLFilters used to translate names.
setMoMLFilters(List, Workspace) - Static method in class ptolemy.moml.MoMLParser
Set the list of MoMLFilters used to translate names.
setMonitoredStatus(MonitoredStatus) - Method in class org.kepler.monitor.MonitorAttribute
 
setMouseListener(MouseListener) - Method in class org.kepler.gui.AnnotatedPTree
To use a different Mouse listener set it here before calling initAnnotatedPTree();
setMsg(String) - Method in class org.kepler.objectmanager.data.DataSrcProgressFrame
Sets the message text in the frame
setMultiple() - Method in class org.kepler.objectmanager.data.db.Entity
Sets the multiple to true.
setMultiport(boolean) - Method in class ptolemy.actor.IOPort
If the argument is true, make the port a multiport.
setMultiport(boolean) - Method in class ptolemy.actor.lib.hoc.MirrorPort
Override the base class to also set the associated port, if there is one.
setMultiport(boolean) - Method in class ptolemy.actor.lib.hoc.MultiCompositePort
If the argument is true, make the port a multiport.
setMultiport(boolean) - Method in class ptolemy.actor.lib.hoc.RefinementPort
If the argument is true, make the port a multiport.
setMultiport(boolean) - Method in class ptolemy.domains.modal.modal.ModalPort
If the argument is true, make the port a multiport.
setMultiport(boolean) - Method in class ptolemy.domains.modal.modal.ModalRefinementPort
If the argument is true, make the port a multiport.
setMultiport(boolean) - Method in class ptolemy.domains.modal.modal.RefinementPort
If the argument is true, make the port a multiport.
setMultiport(boolean) - Method in class ptolemy.domains.modal.modal.TransitionRefinementPort
If the argument is true, make the port a multiport.
setMutable(boolean) - Method in class org.kepler.configuration.ConfigurationProperty
set whether this property is mutable.
setName(String) - Method in class org.camera.service.NameValuePair
 
setName(String) - Method in class org.cipres.kepler.DisplayObject
Set the name for the DisplayObject object
setName(String) - Method in class org.ecoinformatics.seek.querybuilder.DBQueryDefTable
Returns the name
setName(String) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
 
setName(String) - Method in class org.ecoinformatics.seek.querybuilder.DBWhereOperator
Sets the name
setName(String) - Method in class org.kepler.actor.rest.NameValuePair
 
setName(String) - Method in class org.kepler.hadoop.util.DDPPatternActorUtil
 
setName(String) - Method in class org.kepler.kar.KARCacheContent
 
setName(String) - Method in class org.kepler.moml.KeplerActorMetadata
 
setName(String) - Method in class org.kepler.objectmanager.ActorMetadata
set the name
setName(String) - Method in class org.kepler.objectmanager.cache.CacheContent
 
setName(String) - Method in class org.kepler.objectmanager.cache.CacheObject
set the name
setName(String) - Method in interface org.kepler.objectmanager.cache.CacheObjectInterface
set the name
setName(String) - Method in class org.kepler.objectmanager.cache.WorkflowRunCacheObject
 
setName(String) - Method in class org.kepler.objectmanager.data.DataObjectDescription
Set the name for this data item.
setName(String) - Method in class org.kepler.objectmanager.data.db.DSTableDef
Sets the nameof the table
setName(String) - Method in class org.kepler.objectmanager.data.db.ForeignKey
Method to set constraint name
setName(String) - Method in class org.kepler.objectmanager.data.db.JoinConditionConstraint
Method to set constraint name
setName(String) - Method in class org.kepler.objectmanager.data.db.PrimaryKey
Method to set constraint name
setName(String) - Method in class org.kepler.objectmanager.data.db.UniqueKey
Method to set constraint name
setName(String) - Method in class org.kepler.objectmanager.library.LibItem
 
setName(String) - Method in class org.kepler.reporting.rio.Item
 
setName(String) - Method in class org.kepler.reporting.roml.ReportLayout
 
setName(String) - Method in class org.kepler.sms.KeplerCompositeIOPort
 
setName(String) - Method in class org.kepler.sms.KeplerRefinementIOPort
Calls setRefinedPortPointer to set the pointer.
setName(String) - Method in class org.kepler.util.sql.Column
Set the name.
setName(String) - Method in class org.kepler.util.WorkflowRun
 
setName(String) - Method in class org.mlc.swing.layout.BeanProperty
Registers the value of the name property
setName(String) - Method in class org.mlc.swing.layout.ContainerLayout
Registers the value of the name property
setName(String) - Method in class ptolemy.actor.lib.Assert.AssertPort
 
setName(String) - Method in class ptolemy.actor.lib.gui.Display
Set or change the name.
setName(String) - Method in class ptolemy.actor.lib.gui.InteractiveDialog
Set or change the name.
setName(String) - Method in class ptolemy.actor.lib.gui.InteractiveShell
Set or change the name.
setName(String) - Method in class ptolemy.actor.lib.gui.MatrixViewer
Set or change the name.
setName(String) - Method in class ptolemy.actor.lib.gui.PlotterBase
Set or change the name.
setName(String) - Method in class ptolemy.actor.lib.hoc.MirrorPort
Override the base class to also set the associated port, if there is one.
setName(String) - Method in class ptolemy.actor.lib.hoc.MultiCompositePort
Set the name of the port, and mirror the change in all the mirror ports.
setName(String) - Method in class ptolemy.actor.lib.hoc.RefinementPort
Set the name of the port, and mirror the change in all the mirror ports.
setName(String) - Method in class ptolemy.actor.parameters.ParameterMirrorPort
Override the base class to also set the associated port, if there is one.
setName(String) - Method in class ptolemy.actor.parameters.ParameterPort
Set the name, and propagate the name change to the associated parameter.
setName(String) - Method in class ptolemy.actor.parameters.PortParameter
Set or change the name, and propagate the name change to the associated port.
setName(String) - Method in class ptolemy.actor.parameters.SharedParameter
Override the base class to register as a shared parameter in the workspace.
setName(String) - Method in class ptolemy.data.expr.Variable
Override the base class to throw an exception if renaming this variable results in an error evaluating some variable that depends on it.
setName(String) - Method in class ptolemy.domains.modal.kernel.FSMTransitionParameter
Upon setting the name of this parameter change the corresponding attribute in the transition.
setName(String) - Method in class ptolemy.domains.modal.modal.ModalPort
Set the name of the port, and mirror the change in all the mirror ports.
setName(String) - Method in class ptolemy.domains.modal.modal.ModalRefinementPort
Set the name of the port, and mirror the change in all the mirror ports.
setName(String) - Method in class ptolemy.domains.modal.modal.RefinementPort
Set the name of the port, and mirror the change in all the mirror ports.
setName(String) - Method in class ptolemy.domains.modal.modal.TransitionRefinementPort
Set the name of the port, and mirror the change in all the mirror ports.
setName(String) - Method in class ptolemy.graph.test.TestConstant
Set the name of this constant.
setName(String) - Method in class ptolemy.graph.test.TestVariable
Set the name of this variable.
setName(String) - Method in class ptolemy.kernel.ComponentEntity
Set the name of the ComponentEntity.
setName(String) - Method in class ptolemy.kernel.ComponentRelation
Set the name of the ComponentRelation.
setName(String) - Method in class ptolemy.kernel.Port
Set the name of the port.
setName(String) - Method in class ptolemy.kernel.util.Attribute
Set the name of the attribute.
setName(String) - Method in interface ptolemy.kernel.util.Nameable
Set or change the name.
setName(String) - Method in class ptolemy.kernel.util.NamedObj
Set or change the name.
setName(String) - Method in class ptolemy.kernel.util.test.TestNullNamedObj
Set or change the name.
setName(String) - Method in class ptolemy.kernel.util.Workspace
Set or change the name.
setNamedObjToOpen(NamedObj) - Method in class org.kepler.gui.component.OpenCompositeAction
 
setNamespace(String) - Method in class org.ecoinformatics.seek.ecogrid.DocumentType
Method to set namespace for this doucmment type
setNamespace(String) - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.ResultRecord
Set the namespace of this record.
setNamespace(boolean, ConfigurationNamespace) - Method in class org.kepler.configuration.ConfigurationProperty
set the namespace of this property
setNamespace(ConfigurationNamespace) - Method in class org.kepler.configuration.ConfigurationProperty
set the namespace of this property
setNamespace(ConfigurationNamespace, boolean) - Method in class org.kepler.configuration.ConfigurationProperty
sets the namespace.
setNamespace(ConfigurationNamespace, boolean, boolean) - Method in class org.kepler.configuration.ConfigurationProperty
sets the namespace.
setNamespace(ConfigurationProperty, ConfigurationNamespace, boolean) - Static method in class org.kepler.configuration.ConfigurationProperty
set the namespace on a configurationProperty
setNamespace(ConfigurationProperty, ConfigurationNamespace, boolean, boolean) - Static method in class org.kepler.configuration.ConfigurationProperty
set the namespace on a configurationProperty
setNamespace(String) - Method in class org.kepler.sms.SemanticType
 
setNewIteration(boolean) - Method in class ptolemy.domains.modal.kernel.FSMActor
Set the flag indicating whether we are at the start of a new iteration (firing).
setNewRange(Range) - Method in class org.kepler.tagging.Transition
 
setNewString(String) - Method in class org.kepler.tagging.TagReloadType.SearchStringChange
 
setNormal(double) - Method in class ptolemy.vergil.actor.PortConnectSite
Do nothing.
setNumFooterLines(int) - Method in class org.kepler.objectmanager.data.db.Entity
set the number of footer lines in the entity
setNumFooterLines(int) - Method in class org.kepler.util.DelimitedReader
Set up the footer line number.
setNumHeaderLines(int) - Method in class org.kepler.objectmanager.data.db.Entity
sets the number of header lines in the entity
setNumRows(String) - Method in class org.geon.LidarJobConfig
 
setNumSets(int) - Method in class ptolemy.plot.Plot
Deprecated. 
setNumSets(int) - Method in interface ptolemy.plot.PlotInterface
Deprecated. 
setNumTasks(int) - Method in class org.kepler.job.Job
 
setObj(NamedObj) - Method in class org.kepler.tagging.TagEvent
 
setObject(Object) - Method in class org.cipres.kepler.DisplayObject
Set the object for the DisplayObject object.
setObject(NamedObj) - Method in class org.kepler.gui.lsid.LSIDViewerAction
 
setObject(NamedObj) - Method in class org.kepler.gui.RenameComponentEntityAction
 
setObservables(String[]) - Method in class org.kepler.gis.actor.pylaski.PylaskiUtilities.Settings
Sets the list of observables.
setOffset(int, int) - Method in class org.sdm.spa.actors.piw.viz.SequenceCollection
 
setOldRange(Range) - Method in class org.kepler.tagging.Transition
 
setOldString(String) - Method in class org.kepler.tagging.TagReloadType.SearchStringChange
 
setOntologyIndexFile() - Static method in class org.kepler.Kepler
 
setOpen(PreferencesFrame) - Method in class org.kepler.gui.PreferencesFrameTracker
 
setOpenIcon(Icon) - Method in class org.kepler.gui.OntologyTreeCellRenderer
Sets the icon used to represent non-leaf nodes that are expanded.
setOperation1 - Variable in class org.sdm.spa.SoaplabServiceStarter
Setting set_<name> operations with appropriate input values.
setOperationName(String) - Method in class org.kepler.authentication.AuthenticationService
 
setOperator(String) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
set the operator by name (string)
setOperator(String) - Method in class org.ecoinformatics.seek.querybuilder.DBWhereOperator
Sets the operator name (calls setName)
setOrCreate(NamedObj, String, int) - Static method in class ptolemy.actor.util.DFUtilities
If the specified container does not contain a variable with the specified name, then create such a variable and set its value to the specified integer.
setOrCreate(NamedObj, String, String) - Static method in class ptolemy.actor.util.DFUtilities
If the specified container does not contain a variable with the specified name, then create such a variable and set its expression to the specified string.
setOrder(int) - Method in class ptolemy.math.Interpolation
Set the interpolation order.
setOrderedInsert(boolean) - Method in class org.kepler.objectmanager.library.LibIndex
In general orderedInsert should always be true.
setOrderLimit(int) - Static method in class ptolemy.data.SmoothToken
Set the maximum order of any token (the number of derivatives).
setOrientation(BaseFigure.Orientation) - Method in class org.kepler.monitor.figure.BaseFigure
It only sets the orientation indicator.
setOrientation(BaseFigure.Orientation) - Method in class org.kepler.monitor.figure.ProgressBarFigure
Sets the orientation and calls BaseFigure.update() if the orientation changes.
setOrientation(BaseFigure.Orientation) - Method in class org.kepler.monitor.figure.TrafficLightFigure
Sets the orientation and calls BaseFigure.update() if the orientation changes.
setOrigin(int, int) - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Sets the cursor's origin to the given column and row.
setOriginalRunLSID(KeplerLSID, KeplerLSID, boolean) - Method in class org.kepler.util.RemoteStoreRunsTracker
 
setOriginalServiceList(Vector) - Method in class org.ecoinformatics.seek.ecogrid.EcogridPreferencesTab
Set original service list
setOriginModule(Module) - Method in class org.kepler.configuration.ConfigurationProperty
 
setOrphaned(boolean) - Method in class org.kepler.sms.NamedOntClass
 
setOrphaned(boolean) - Method in class org.kepler.tagging.gui.DeletableColorIconLabel
 
setOtherInputFile(String) - Method in class org.kepler.job.Job
Set an "other" input file for job.
setOutput(OutputStream) - Method in class org.kepler.provenance.prov.ProvRecording
Set the output.
setOutput(String) - Method in class org.sdm.spa.gui.UserInteractiveShell
Specify an output string to be sent.
setOutput(String) - Method in class org.sdm.spa.TextualInteractionShell
Specify an output string to be sent.
setOutput(boolean) - Method in class ptolemy.actor.IOPort
If the argument is true, make the port an output port.
setOutput(String) - Method in class ptolemy.actor.lib.gui.InteractiveShell
Specify an output string to be sent.
setOutput(boolean) - Method in class ptolemy.actor.lib.hoc.MirrorPort
Override the base class to also set the associated port, if there is one.
setOutput(boolean) - Method in class ptolemy.actor.lib.hoc.MultiCompositePort
If the argument is true, make the port an output port.
setOutput(boolean) - Method in class ptolemy.actor.lib.hoc.RefinementPort
If the argument is true, make the port an output port.
setOutput(boolean) - Method in class ptolemy.actor.PublisherPort
Override the base class to require the port to be an output.
setOutput(boolean) - Method in class ptolemy.actor.SubscriberPort
Override the base class to refuse to make the port an output.
setOutput(boolean) - Method in class ptolemy.domains.modal.modal.ModalPort
If the argument is true, make the port an output port.
setOutput(boolean) - Method in class ptolemy.domains.modal.modal.ModalRefinementPort
If the argument is true, make the port an output port.
setOutput(boolean) - Method in class ptolemy.domains.modal.modal.RefinementPort
If the argument is true, make the port an output port.
setOutput(boolean) - Method in class ptolemy.domains.modal.modal.TransitionRefinementPort
If the argument is true, make the port an output port.
setOutput(boolean) - Method in class ptolemy.domains.sdf.kernel.SDFIOPort
Deprecated.
Set whether or not this port is an output.
setOutputFile(String) - Method in class org.kepler.job.Job
Set an output file for job.
setOutputNil(boolean) - Method in class org.sdm.spa.XMLHelper
Set the value of _outputNilVal.
setOutputType(InteropFramework.ProvFormat) - Method in class org.kepler.provenance.prov.ProvRecording
Set the output type.
setOverflow(Overflow) - Method in class ptolemy.math.FixPointQuantization
Return a FixPointQuantization with a changed overflow strategy.
setOverTableView() - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
This method will set tableview and its model
setPage(URL) - Method in class ptolemy.actor.gui.HTMLViewer
Set the page displayed by this viewer to be that given by the specified URL.
setPage(PDFPage) - Method in class ptolemy.vergil.pdfrenderer.PDFIcon
Specify an PDF page to display.
setPaintDiagonals(boolean) - Method in class com.jgoodies.forms.debug.FormDebugPanel
Enables or disables to paint the panel's diagonals.
setPaintDiagonals(boolean) - Method in class org.mlc.swing.layout.FormDebugPanel
Enables or disables to paint the panel's diagonals.
setPaintInBackground(boolean) - Method in class com.jgoodies.forms.debug.FormDebugPanel
Specifies to paint in background or foreground.
setPaintInBackground(boolean) - Method in class org.mlc.swing.layout.FormDebugPanel
Specifies to paint in background or foreground.
setPaintMode() - Method in class ptolemy.plot.EPSGraphics
 
setParagraphGapSize(ConstantSize) - Method in class com.jgoodies.forms.builder.DefaultFormBuilder
Sets the size of gaps between paragraphs using the given constant size.
setParametersFromFile(NamedObj, String) - Static method in class org.kepler.util.ParseWorkflowUtil
Set parameters in a workflow from a configuration file.
setParameterType(String, ExecutionChoice.ParameterType) - Method in class org.kepler.ddp.actor.ExecutionChoice
Set the ParameterType for a parameter contained by this actor.
setParameterType(NamedObj, String, ExecutionChoice.ParameterType) - Static method in class org.kepler.ddp.actor.ExecutionChoice
Set the ParameterType for a parameter in contained in a sub-workflow.
setParaNum(int) - Method in class org.kepler.hadoop.io.input.DuplicatedTextRecordReader
 
setParent(TableauFrame) - Method in class org.ecoinformatics.seek.ecogrid.EcogridPreferencesTab
 
setParent(TableauFrame) - Method in class org.ecoinformatics.seek.ecogrid.ServicesListModificationPanel
 
setParent(ConfigurationProperty) - Method in class org.kepler.configuration.ConfigurationProperty
set the parent property of this property
setParent(TableauFrame) - Method in class org.kepler.gui.ComponentLibraryPreferencesTab
 
setParent(TableauFrame) - Method in class org.kepler.gui.kar.KARPreferencesTab
 
setParent(TableauFrame) - Method in interface org.kepler.gui.PreferencesTab
PreferencesTab usually will need access to the configuration of the Tableau that is opened in the BasicGraphFrame.
setParent(KarXml) - Method in class org.kepler.kar.karxml.KarXml.KarEntry
 
setParent(Entity) - Method in class org.kepler.objectmanager.data.db.AttributeList
set partent entity
setParent(Integer) - Method in class org.kepler.objectmanager.library.LibItem
 
setParent(TableauFrame) - Method in class org.kepler.workflowscheduler.gui.configurationwizard.WorkflowRunEnginePreferenceTab
PreferencesTab usually will need access to the configuration of the Tableau that is opened in the BasicGraphFrame.
setParent(TableauFrame) - Method in class org.kepler.workflowscheduler.gui.configurationwizard.WorkflowSchedulerPreferenceTab
PreferencesTab usually will need access to the configuration of the Tableau that is opened in the BasicGraphFrame.
setParent(ScheduleElement) - Method in class ptolemy.actor.sched.ScheduleElement
Set the parent schedule element of this schedule element to the specified schedule element.
setParent(ScheduleElement) - Method in class ptolemy.graph.sched.ScheduleElement
Set the parent schedule element of this schedule element to the specified schedule element.
setParent(String) - Method in class ptolemy.vergil.basic.export.web.WebElement
Set the name of the desired parent element.
setParentComponent(Component) - Method in class org.kepler.gui.AnnotatedPTree
 
setParentFrame(TableauFrame) - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.DatasetPanel
Implementation of TabPane setParentFrame(TableauFrame)
setParentFrame(TableauFrame) - Method in class org.kepler.gui.BasicLibraryPane
Implementation of TabPane setParentFrame(TableauFrame)
setParentFrame(TableauFrame) - Method in class org.kepler.gui.ClassicViewPane
 
setParentFrame(TableauFrame) - Method in class org.kepler.gui.ComponentLibraryTab
Implementation of TabPane setParentFrame(TableauFrame)
setParentFrame(TableauFrame) - Method in class org.kepler.gui.DefaultViewPane
 
setParentFrame(TableauFrame) - Method in class org.kepler.gui.DualVerticalViewPane
 
setParentFrame(TableauFrame) - Method in class org.kepler.gui.PlotsEditorPanel
Set the frame for this tab.
setParentFrame(TableauFrame) - Method in class org.kepler.gui.PlotsPanel
Set the frame for this tab.
setParentFrame(PtolemyFrame) - Method in class org.kepler.gui.popups.LibraryPopup
 
setParentFrame(PtolemyFrame) - Method in class org.kepler.gui.popups.NoLiidLibraryPopup
 
setParentFrame(TableauFrame) - Method in class org.kepler.gui.SingleViewPane
 
setParentFrame(TableauFrame) - Method in interface org.kepler.gui.TabPane
This method sets the TableauFrame this tab is associated with.
setParentFrame(TableauFrame) - Method in class org.kepler.gui.TabPaneExtensionExample
 
setParentFrame(TableauFrame) - Method in interface org.kepler.gui.ViewPane
This method sets the TableauFrame this view is associated with.
setParentFrame(TableauFrame) - Method in class org.kepler.gui.WorkflowOutlineTabPane
 
setParentFrame(TableauFrame) - Method in class org.kepler.objectmanager.cache.browser.CacheViewerTabPane
 
setParentFrame(TableauFrame) - Method in class org.kepler.profiling.gui.PreviousExecutionPanel
Set the parent frame.
setParentFrame(TableauFrame) - Method in class org.kepler.profiling.gui.ViewWatchingTabPane
Set the parent frame and add listeners for the workflow run manager, view changes, and tab changes.
setParentFrame(TableauFrame) - Method in class org.kepler.profiling.gui.WorkflowRunOutlineTabPane
Set the parent frame and add listeners for the workflow run manager, view changes, and tab changes.
setParentFrame(TableauFrame) - Method in class org.kepler.reporting.gui.ItemsOfInterestPanel
Implementation of TabPane setParentFrame(TableauFrame)
setParentFrame(TableauFrame) - Method in class org.kepler.reporting.gui.PropertiesPanel
Implementation of TabPane setParentFrame(TableauFrame)
setParentFrame(TableauFrame) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
Implementation of TabPane setParentFrame(TableauFrame)
setParentFrame(TableauFrame) - Method in class org.kepler.reporting.gui.ReportViewerPanel
Implementation of TabPane setParentFrame(TableauFrame)
setParentFrame(TableauFrame) - Method in class org.kepler.reporting.gui.ReportViewerTOC
Implementation of TabPane setParentFrame(TableauFrame)
setParentFrame(TableauFrame) - Method in class org.kepler.workflowrunmanager.gui.WorkflowRunManagerPanel
 
setParentFrame(TableauFrame) - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerParentPanel
Set the parent frame of this panel
setParentFrame(TableauFrame) - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerServerInstallationInfoPanel
Set the parent frame of this panel
setParentId(NamedObjId) - Method in class org.kepler.moml.NamedObjId
 
setParser(MoMLParser) - Method in class ptolemy.moml.ParserAttribute
Set the parser.
setParseTreeEvaluator(ParseTreeEvaluator) - Method in class ptolemy.data.expr.Variable
Set a new parseTreeEvaluator.
setPassword(String) - Method in class org.kepler.authentication.AuthenticationService
 
setPassword(String) - Method in class org.kepler.authentication.Domain
 
setPassword(char[]) - Method in class ptolemy.actor.gui.PasswordAttribute
Set the password contained by this attribute.
setPattern(String[]) - Method in class org.kepler.objectmanager.data.text.TextDomain
 
setPattern(String) - Method in class ptolemy.util.StreamExec
Set the pattern that is used to search data sent to stdout.
setPeriod(int) - Method in class ptolemy.math.Interpolation
Set the value repetition period.
setPersistent(boolean) - Method in class org.kepler.provenance.RecordingParameters
Set the persistency of all parameters.
setPersistent(boolean) - Method in class ptolemy.kernel.util.ChangeRequest
Assert whether the change represented by this request is persistent.
setPersistent(boolean) - Method in interface ptolemy.kernel.util.MoMLExportable
Set the persistence of this object.
setPersistent(boolean) - Method in class ptolemy.kernel.util.NamedObj
Set the persistence of this object.
setPersistentParameters(boolean) - Method in class org.kepler.provenance.ProvenanceRecorder
Set the persistence of parameters.
setPhysicalLineDelimiter(String) - Method in class org.kepler.objectmanager.data.db.Entity
 
setPicture(Object) - Method in interface ptolemy.actor.lib.image.ImageDisplayInterface
Set the platform dependent picture of the image.
setPicture(Object) - Method in class ptolemy.actor.lib.image.ImageDisplayJavaSE
Set the platform dependent picture of the image.
setPixel(int, int, int) - Method in class ptolemy.media.Picture
Set the specified pixel to the given monochrome value, which should be in the range from zero (black) to 255 (white).
setPixel(int, int, int, int, int) - Method in class ptolemy.media.Picture
Set the specified pixel to the given color value, where each color argument should be in the range from zero (absent) to 255 (fully saturated).
setPlatformContainer(Object) - Method in interface ptolemy.actor.lib.gui.PlotterBaseInterface
Set the platform dependent container of the plotter.
setPlatformContainer(Object) - Method in class ptolemy.actor.lib.gui.PlotterBaseJavaSE
Set the platform dependent container of the plotter.
setPlatformContainer(Object) - Method in interface ptolemy.actor.lib.image.ImageDisplayInterface
Set the platform dependent container of the image.
setPlatformContainer(Object) - Method in class ptolemy.actor.lib.image.ImageDisplayJavaSE
Set the platform dependent container of the image.
setPlayPortEvents(boolean) - Method in class org.kepler.provenance.RecordPlayer
Set if port events are to be played.
setPlot(Plot) - Method in class org.kepler.plotting.PlotEditor
 
setPlot(PlotBoxInterface) - Method in class ptolemy.actor.gui.PlotEffigy
Set the plot that this is an effigy of.
setPlot(PlotBox) - Method in class ptolemy.plot.PlotApplet
Set the plot object to operate on.
setPlotEditor(PlotEditor) - Method in class org.kepler.plotting.Plot
 
setPlotEditor(PlotEditor) - Method in class org.kepler.plotting.Row
 
setPlotRectangle(Rectangle) - Method in class ptolemy.plot.PlotBox
Set the plot rectangle inside the axes.
setPlotRectangle(Object) - Method in class ptolemy.plot.PlotBox
Set the plot rectangle.
setPlotRectangle(Object) - Method in interface ptolemy.plot.PlotBoxInterface
Set the plot rectangle inside the axes.
setPlottingControllerFactory(PlottingControllerFactory) - Static method in class org.kepler.gui.PlotsEditorPanel
 
setPnt(Point) - Method in class org.ecoinformatics.seek.querybuilder.DBQueryDefTable
Sets the location Point
setPointer(String) - Method in class org.kepler.sms.KeplerRefinementIOPort
Assign the given pointer (name) to the port.
setPointsPersistence(int) - Method in class ptolemy.plot.Plot
Calling this method with a positive argument sets the persistence of the plot to the given number of points.
setPointsPersistence(int) - Method in interface ptolemy.plot.PlotInterface
Calling this method with a positive argument sets the persistence of the plot to the given number of points.
setPort(IOPort) - Method in class org.kepler.monitor.MonitorAttribute
 
setPort(IOPort) - Method in class org.kepler.sms.KeplerIOPortReference
Create a reference from the given port.
setPort(KeplerVirtualIOPort) - Method in class org.kepler.sms.KeplerVirtualIOPortReference
Sets the reference to the given virtual port.
setPort(int) - Method in class org.sdm.spa.actors.transport.vo.ConnectionDetails
 
setPortForwardingL(String) - Method in interface org.kepler.ssh.ExecInterface
port forwarding not working on local exec
setPortForwardingL(String) - Method in class org.kepler.ssh.GsiSshExec
port forwarding not working on local exec
setPortForwardingL(String) - Method in class org.kepler.ssh.LocalExec
port forwarding not working on local exec
setPortForwardingL(String) - Method in class org.kepler.ssh.SshExec
Set a local port forwarding before the connection is made.
setPortForwardingR(String) - Method in interface org.kepler.ssh.ExecInterface
port forwarding not working on local exec
setPortForwardingR(String) - Method in class org.kepler.ssh.GsiSshExec
port forwarding not working on local exec
setPortForwardingR(String) - Method in class org.kepler.ssh.LocalExec
port forwarding not working on local exec
setPortForwardingR(String) - Method in class org.kepler.ssh.SshExec
Set a remote port forwarding before the connection is made.
setPortHash(Hashtable) - Method in class ptolemy.vergil.basic.KeplerDocumentationAttribute
Set the port hash.
setPortIOType(TypedIOPort, ExecutionChoice.IOType) - Method in class org.kepler.ddp.actor.ExecutionChoice
Set the PortType for a port.
setPortLastAccess(FireState.PortAccessType) - Method in class org.kepler.provenance.FireState
Set the last port access for the actor.
setPortsFor2d(boolean) - Method in class org.kepler.data.conversion.binary.EnsembleActor
 
setPosition(String) - Method in class org.kepler.reporting.rio.ItemLabel
 
setPrecision(double) - Method in class org.kepler.objectmanager.data.NumericDomain
 
setPrecision(Precision) - Method in class ptolemy.math.FixPointQuantization
Return a FixPointQuantization with a changed precision.
setPreferredDim(Dimension) - Method in class org.ecoinformatics.seek.querybuilder.DBTableField
Sets the preferred dimension
setPreferredSize() - Method in class org.sdm.spa.actors.piw.viz.OverviewPanel
 
setPrefMinMaxSizes(JComponent, Dimension) - Static method in class org.kepler.gui.WidgetFactory
sets the minimum, maximum and preferred sizes to the passed Dimension
setPrefMinSizes(JComponent, Dimension) - Static method in class org.kepler.gui.WidgetFactory
sets the minimum and preferred sizes to the passed Dimension
setPreviewRunLSID(KeplerLSID, KeplerLSID, boolean) - Method in class org.kepler.util.RemoteStoreRunsTracker
 
setPrevPanel(DragAndDropPanel) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
 
setPrevSelectedItem(Item) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
 
setPrimaryLabel(String) - Method in class ptolemy.moml.unit.Unit
Set the primary label.
setPrintResultset(boolean) - Method in class org.ecoinformatics.seek.dataquery.HsqlDataQueryAction
Method to print out the result set.
setPrivacy(WorkflowResults.Privacy) - Method in class org.kepler.cloudsharing.util.WorkflowResults
Set the privacy for this collection.
setProcessed(boolean) - Method in class org.ecoinformatics.seek.querybuilder.DBJoinPrcTable
 
setProcessings(String[]) - Method in class org.geon.LidarJobConfig
 
setProductionRate() - Method in class org.kepler.sms.actors.MergeActor
 
setProgressLabel(String) - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.DatasetPanel
Sets the progressLabel attribute of the DatasetPanel object
setProperties(String) - Method in class org.geon.LidarJobDB
 
setProperties(String) - Method in class org.geon.LidarUtilities
Sets or resets the property file parameters.
setProperties(Frame) - Method in class ptolemy.actor.gui.WindowPropertiesAttribute
Set the properties of the specified frame to match the current value of the attribute.
setPropertiesButton(JRadioButton) - Method in class org.kepler.reporting.gui.DragAndDropPanel
 
setProperty(String, Object) - Method in class com.microstar.xml.driver.SAXDriver
 
setProperty(String, Object) - Method in class org.kepler.gui.LibrarySearcher
set a user setable property
setProperty(String, Object) - Method in class org.kepler.monitor.MonitoredStatus
Sets the value of a monitored property.
setProperty(GraphProperty, String) - Method in class org.kepler.plotting.Plot
 
setProperty(String, Object) - Method in class org.kepler.reporting.rio.fop.tools.AbstractObjectReader
 
setProperty(String, String) - Method in class org.kepler.reporting.rio.ItemProperties
Returns boolean - is this change worthy of marking the TableauFrame modified
setProperty(String, String, Object) - Method in class org.mlc.swing.layout.ContainerLayout
Set a user defined property for this component so that the tool can manage the properties of the component thus reducing the burden on the user
setProperty(Object, String, Object) - Method in class ptolemy.vergil.basic.AbstractBasicGraphModel
Set the property of the given graph object associated with the given property name to the given value.
setPropertyHash(Hashtable) - Method in class ptolemy.vergil.basic.KeplerDocumentationAttribute
Set the property hashtable.
setPropertyId(String) - Method in class org.kepler.sms.SemanticProperty
set the semantic property id value
setPropertyName(String) - Method in class org.kepler.monitor.MonitoredStatus.PropertyTimer
Sets the property name for the timer.
setPropertyNameForLabel(String) - Method in class org.kepler.monitor.FigureUpdater
Sets the property name for the case of LabelFigure
setPropertyValue(Object) - Method in class org.kepler.monitor.MonitoredStatus.PropertyTimer
Sets the property value for the timer.
setProtocolPath(String) - Method in class org.kepler.ssh.SshExec
 
setProtocolPathDest(String) - Method in class org.sdm.spa.actors.transport.FileCopierBase
 
setProtocolPathSrc(String) - Method in class org.sdm.spa.actors.transport.FileCopierBase
 
setProvider(boolean) - Method in class ptolemy.component.MethodCallPort
Call with argument true to specify that this port provides the method, and call with argument false to specify that it requires the method.
setPseudoTerminal(boolean) - Method in class org.kepler.ssh.SshExec
 
setPtolemyFrame(PtolemyFrame) - Method in class org.kepler.gui.RemoveComponentAction
allows you to set the ptolemyFrame that should be used as the parent of this action.
setPtolemyFrame(PtolemyFrame) - Method in class org.kepler.gui.ShowDocumentationAction
allows you to set the ptolemyFrame that should be used as the parent of this action.
setPtolemyFrame(PtolemyFrame) - Method in class org.kepler.tagging.gui.ExistingTagsPanel
 
setPublicFile(boolean) - Method in class org.kepler.kar.UploadToRepository
 
setQBEditor(QBEditor) - Method in class org.ecoinformatics.seek.querybuilder.QBApp
Set qb tableau
setqEnd(int) - Method in class org.kepler.bio.util.BlastTabularResult
 
setqStart(int) - Method in class org.kepler.bio.util.BlastTabularResult
 
setQualityValue(Object) - Method in class org.kepler.monitor.figure.QualityFigure
Set the quality score for entity being monitored
setQuery(QueryType) - Method in class org.ecoinformatics.seek.datasource.EcogridQueryDataCacheItem
 
setQueryId(String) - Method in class org.kepler.bio.util.BlastTabularResult
 
setQueryValue(String) - Method in class ptolemy.actor.gui.PtolemyQuery.ActionableEntry
Set the contents of the entry box.
setQueryValue(String) - Method in interface ptolemy.gui.SettableQueryChooser
Set the string representation of the query.
setQuitMethod(Top, Method) - Static method in class ptolemy.gui.MacOSXAdapter
Set the quit handler (Command-q) for a Top window.
setQuoteCharater(String[]) - Method in class org.kepler.objectmanager.data.text.TextDelimitedDataFormat
 
setRange(IOPort) - Method in class org.kepler.sms.KeplerIOPortSemanticLink
Assigns the IOPort as the range of the link.
setRange(KeplerVirtualIOPort) - Method in class org.kepler.sms.KeplerIOPortSemanticLink
Assigns the Virtual IOPort as the range of the link.
setRankingTableauFrame(TableauFrame) - Static method in class org.kepler.workflow.WorkflowManager
 
setRate(Port, String, int) - Static method in class ptolemy.actor.util.DFUtilities
Set the rate variable with the specified name to the specified value.
setRateVariable(Port, String, int) - Static method in class ptolemy.actor.util.DFUtilities
If a variable with the given name does not exist, then create a variable with the given name.
setReader(BufferedReader) - Method in class ptolemy.actor.lib.Reader
Deprecated.
Set the reader.
setReady() - Method in class org.ecoinformatics.seek.datasource.DataSourceIcon
Set the icon to Ready state
setRecordDelimiter(String) - Method in class org.kepler.objectmanager.data.db.Entity
set the record delimiter used with this entity
setRecordId(String) - Method in class org.ecoinformatics.seek.datasource.EcogridMetaDataCacheItem
 
setRecordId(String) - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.ResultRecord
Set the identifier of this record.
setRect(Rectangle) - Method in class org.ecoinformatics.seek.querybuilder.DBTableField
Sets the rectangle if the item
setRect(int, int, int, int) - Method in class org.ecoinformatics.seek.querybuilder.DBTableField
Sets the rectangle
setReference(boolean) - Method in class org.kepler.objectmanager.data.db.AttributeList
 
setReference(boolean) - Method in class org.kepler.reporting.rio.ItemValue
 
setReferencedKeys(String[]) - Method in class org.kepler.objectmanager.data.db.JoinConditionConstraint
Method to set up referenced key in parent table(referencedEntity)
setReferenceId(String) - Method in class org.kepler.objectmanager.data.db.AttributeList
 
setReferralList(String) - Method in class org.kepler.util.WorkflowRunBuilder
 
setRefresh(boolean) - Method in class org.ecoinformatics.seek.datasource.EcogridCompressedDataCacheItem
Method to set up refresh variable
setRefreshFrameAfterSave(boolean) - Method in class org.kepler.gui.kar.ExportArchiveAction
Allow for toggling the close/open of the main frame after saving.
setRegisterLSID(boolean) - Method in class org.kepler.kar.KARBuilder
 
setRelation(int, int, double) - Method in class ptolemy.domains.modal.kernel.RelationList
Update the relation in the relation list referred by the relation index argument with the given type and difference information.
setRelation(ComponentRelation) - Method in class ptolemy.vergil.kernel.Link
Set the relation for this link.
setRemoteDocumentationURLBase(String) - Static method in class ptolemy.vergil.actor.DocManager
Set the location of the remote documentation.
setRemoteKarLSID(String) - Method in class org.kepler.workflowscheduler.gui.LocalRemoteWorkflowMap
 
setRemovable(boolean) - Method in class org.kepler.sms.NamedOntClass
 
setRemove(String) - Method in class org.mlc.swing.layout.NewComponentDialog
 
setRemoveGR(boolean) - Method in class ptolemy.moml.filter.RemoveGraphicalClasses
Set to true if we should removed classes that start with ptolemy.domains.gr.
setRepoName(String) - Method in class org.kepler.kar.KARCached
 
setRepoName(String) - Method in class org.kepler.kar.KARCacheError
 
setReport(ReportInstance) - Method in class org.kepler.reporting.gui.ReportViewerPanel
 
setReport(ReportLayout) - Method in class org.kepler.reporting.rio.fop.ReportInputSource
Sets the report.
setReportErrorsToHandler(boolean) - Method in class ptolemy.moml.MoMLChangeRequest
Specify whether or not to report errors via the handler that is registered with the parser.
setReportInstance(ReportInstance) - Method in class org.kepler.gui.state.ReportingStateChangeEvent
 
setReportLayout(ReportLayout) - Method in class org.kepler.objectmanager.cache.ReportLayoutCacheObject
set the data file that is associated with this RawDataCacheObject
setRepository(Repository) - Method in class org.kepler.kar.UploadToRepository
Set the Repository to upload the KARFile to.
setRepositoryName(String) - Method in class org.kepler.kar.karxml.KarXml
 
setRepositoryName(String) - Method in class org.kepler.workflowscheduler.gui.LocalRemoteWorkflowMap
 
setResolution(double) - Method in class ptolemy.vergil.toolbox.SnapConstraint
Set the resolution for this instance.
setResourceName(String) - Method in class org.kepler.objectmanager.cache.DataCacheObject
 
setResults(WorkflowResults) - Method in class org.kepler.cloudsharing.fs.FileSystemClient
Set the results.
setReuseDatasets(boolean) - Method in class ptolemy.plot.Plot
If the argument is true, then datasets with the same name are merged into a single dataset.
setReuseDatasets(boolean) - Method in interface ptolemy.plot.PlotInterface
If the argument is true, then datasets with the same name are merged into a single dataset.
setRevision(boolean) - Method in class org.kepler.kar.KARBuilder
 
setRevision(Long) - Method in class org.kepler.objectmanager.lsid.KeplerLSID
Specifically set the revision on this LSID.
setRhs(UnitExpr) - Method in class ptolemy.moml.unit.UnitConstraint
 
setRight(int) - Method in class org.kepler.objectmanager.library.LibItem
 
setRoot(NamedObj) - Method in class org.kepler.profiling.gui.WorkflowOutlineTreeActorFireModel
Set the object that this tree model looks at.
setRoot(NamedObj) - Method in class ptolemy.vergil.tree.EntityTreeModel
Set the object that this treemodel looks at.
setRootName(String) - Method in class org.kepler.moml.KeplerActorMetadata
 
setRotation(double) - Method in class ptolemy.vergil.icon.ShapeIcon
Specify the rotation angle in radians.
setRounding(Rounding) - Method in class ptolemy.math.FixPointQuantization
Return a FixPointQuantization with a changed rounding strategy.
setRow(int) - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Sets the cursor to the given row.
setRowEditorModel(RowEditorModel) - Method in class org.kepler.reporting.gui.PropertiesTable
 
setRowGroupingEnabled(boolean) - Method in class com.jgoodies.forms.builder.DefaultFormBuilder
Enables or disables the grouping of new data rows.
setRowGroups(int[][]) - Method in class com.jgoodies.forms.layout.FormLayout
Sets the row groups, where each row in such a group gets the same group wide height.
setRows(int) - Method in interface ptolemy.actor.lib.gui.DisplayInterface
Set the desired number of rows of the textArea, if there is one.
setRows(int) - Method in class ptolemy.actor.lib.gui.DisplayJavaSE
Set the desired number of rows of the textArea, if there is one.
setRowSpan(int) - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Sets the cursor's row span.
setRowSpec(int, RowSpec) - Method in class com.jgoodies.forms.layout.FormLayout
Sets the RowSpec at the specified row index.
setRowSpec(int, String) - Method in class org.mlc.swing.layout.ContainerLayout
 
setRunApplication(String, String) - Static method in class org.kepler.Kepler
Set the class and method to invoke instead of starting Kepler.
setRunWorkflowLifecyclePerInput(boolean) - Method in class org.kepler.ddp.actor.pattern.stub.StubBaseActor
Set if the full the full lifecycle of the sub-workflow will be executed for each input.
setSampleRate(int) - Static method in class ptolemy.media.javasound.LiveSound
Set the sample rate to use for audio capture and playback and notify an registered listeners of the change.
setSampleRate(int) - Method in interface ptolemy.media.javasound.LiveSoundInterface
Set the sample rate to use for audio capture and playback and notify an registered listeners of the change.
setSampleRate(int) - Method in class ptolemy.media.javasound.LiveSoundJavaSE
Set the sample rate to use for audio capture and playback and notify an registered listeners of the change.
setSave(boolean) - Static method in class org.kepler.kar.handlers.ProvKAREntryHandler
Set if save() should write PROV to the KAR.
setSaveFile(File) - Method in class org.kepler.gui.kar.ExportArchiveAction
Call this before actionPerformed to do a non-interactive Save, not a Save As...
setSaveRepository(Repository) - Method in class org.kepler.objectmanager.repository.RepositoryManager
set the repository that should be saved to.
setScale(double) - Method in class ptolemy.moml.unit.Unit
Set the scale.
setScale(double) - Method in class ptolemy.vergil.pdfrenderer.PDFIcon
Specify a scaling percentage of the PDF page.
setSchedule(Schedule) - Method in class org.kepler.workflowscheduler.gui.SchedulerAbstractAction
Set the schedule object
setScheduler(Scheduler) - Method in class ptolemy.actor.sched.StaticSchedulingDirector
Set the scheduler for this StaticSchedulingDirector.
setSchema(DSSchemaIFace) - Method in class org.ecoinformatics.seek.querybuilder.DBTableDesktopPane
Sets the Data Src Schema Object and creates all the tables for it
setScrollableContents(JComponent) - Method in class ptolemy.actor.gui.PtolemyDialog
Set the contents of this dialog.
setScrolling(boolean) - Method in class org.kepler.plotting.Plot
 
setSearchAction(Action) - Method in class org.kepler.gui.SearchUIJPanel
Sets the Action to be used when the Search button is pressed.
setSearchData(String) - Method in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreDataSource
Set the searchData of this record.
setSearchEnabled(boolean) - Method in class org.kepler.gui.SearchUIJPanel
if enabled==true, enable the textfield, search, reset, source and advanced buttons, and disable the cancel button.
setSearchNone() - Method in class org.kepler.objectmanager.repository.RepositoryManager
 
setSearchTerm(String) - Method in class org.kepler.gui.SearchUIJPanel
set the current search term String in the textfield
setSeed(Long) - Method in class ptolemy.plot.Histogram
Set the seed of the random number generator used to create the sample plot.
setSelectableDocumentTypeList(SelectableDocumentType[]) - Method in class org.ecoinformatics.seek.ecogrid.SelectableEcoGridService
Method to set selectable docuemnt type list
setSelectableServiceName(SelectableServiceName) - Method in class org.ecoinformatics.seek.ecogrid.SelectableEcoGridService
Method to set selectable service name(both selected and unselected)
setSelected(boolean) - Method in class org.kepler.reporting.gui.DragAndDropPanel
 
setSelected(boolean) - Method in class org.kepler.reporting.rio.Item
 
setSelectedDocumentTypeList(SelectableDocumentType[]) - Method in class org.ecoinformatics.seek.ecogrid.SelectableEcoGridService
Method to set selected docuemnt type list(
setSelectedFile(File) - Method in class ptolemy.gui.PtFileChooser
Set the selected file.
setSelectedItem(Item) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
 
setSelectedOverViewModel(DBSelectTableOverviewModel) - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
Method to set selected table Views's model
setSelectedTab(NamedObj) - Method in class org.kepler.gui.frame.TabbedKeplerGraphFrame
Set the selected tab to the tab containing a specific model.
setSelectedTab(int) - Method in class org.kepler.gui.PreferencesFrame
Set the selected tab using the index of the tab.
setSelectedTab(String) - Method in class org.kepler.gui.PreferencesFrame
Set the selected tab using the name of the tab.
setSelectionPath(TreePath) - Method in class org.kepler.gui.popups.LibraryPopup
 
setSelectionPath(TreePath) - Method in class org.kepler.gui.popups.NoLiidLibraryPopup
 
setSelectionPath(TreePath) - Method in class org.kepler.workflowscheduler.gui.ScheduleChangeController.NonSelectableTreeSelectionModel
Do nothing on this method
setSemanticObject(Object, Object) - Method in class ptolemy.vergil.basic.AbstractBasicGraphModel
Set the semantic object corresponding to the given node, edge, or composite.
setSemanticType(SemanticType) - Method in class org.kepler.sms.RemovableSemanticType
 
setSemanticTypes(Vector<KeplerLSID>) - Method in class org.kepler.kar.KARCacheContent
 
setSemanticTypes(Vector<String>) - Method in class org.kepler.moml.KeplerActorMetadata
 
setSemanticTypes(Vector<String>) - Method in class org.kepler.objectmanager.cache.CacheObject
this returns the semantic types vector
setsEnd(int) - Method in class org.kepler.bio.util.BlastTabularResult
 
setServiceClass(String) - Method in class org.kepler.authentication.Domain
 
setServiceClassification(String) - Method in class org.ecoinformatics.seek.ecogrid.EcoGridService
Set service classification
setServiceDisplayPanel(ServicesDisplayPanel) - Method in class org.ecoinformatics.seek.ecogrid.EcogridPreferencesTab
Method to set up a new service dipaly panel panel
setServiceGroup(String) - Method in class org.ecoinformatics.seek.ecogrid.EcoGridService
 
setServiceName(String) - Method in class org.ecoinformatics.seek.ecogrid.EcoGridService
Set service name
setServiceName(String) - Method in class org.ecoinformatics.seek.ecogrid.SelectableServiceName
Method to set serviceName
setServiceOperation(String) - Method in class org.kepler.authentication.Domain
 
setServicesList(Vector) - Method in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
 
setServiceType(String) - Method in class org.ecoinformatics.seek.ecogrid.EcoGridService
Set service type for this service
setServiceURL(String) - Method in class org.kepler.authentication.AuthenticationService
 
setServiceURL(String) - Method in class org.kepler.authentication.Domain
 
setSessionId(String) - Method in class org.kepler.kar.UploadToRepository
 
setShape(RectangularShape) - Method in class org.kepler.monitor.figure.ProgressBarFigure
Sets the rectangular shape for this figure.
setShape(Shape) - Method in class ptolemy.vergil.icon.ShapeIcon
Specify a path to display.
setShouldShowFullList(boolean) - Method in class org.kepler.modulemanager.gui.SuitesList
 
setShowRootIcon(boolean) - Method in class org.kepler.gui.AnnotatedPTree
 
setShowWarningMessageOnNoReporting(boolean) - Method in class org.kepler.workflowscheduler.gui.ScheduleChangeController
Set the controller showing the warning message or not if there is no reporting design on the workflow.
setSimpleDelimited(boolean) - Method in class org.kepler.objectmanager.data.db.Entity
 
setSingleItemKAR(boolean) - Method in class org.kepler.gui.kar.ExportArchiveAction
 
setSingleTreeSelectionListener(TreeSelectionListener) - Method in class org.kepler.gui.ResultTreeRebuilder
Set the tree selection listener (single selection mode will be set as well)
setSize(long) - Method in class org.kepler.io.FileInfo
 
setSize(int, int) - Method in class ptolemy.actor.gui.HTMLViewer
Override the base class to set the size of the scroll pane.
setSize(Component) - Method in class ptolemy.actor.gui.SizeAttribute
Set the size of the specified component to match the current value of the attribute.
setSize(int, int) - Method in class ptolemy.plot.PlotBox
Set the size of the plot.
setSize(int, int) - Method in interface ptolemy.plot.PlotBoxInterface
Set the size of the plot.
setSkipOntology(boolean) - Method in interface org.kepler.gui.RepositorySearcher
 
setSkipOntology(boolean) - Method in class org.kepler.objectmanager.repository.EcogridRepositoryLibrarySearcher
If we need to skip ontology display
setSkipReposiotryOntology(boolean) - Method in class org.kepler.gui.ComponentLibraryTab
Set true if want not to display remote ontology
setSkipReposiotryOntology(boolean) - Method in class org.kepler.gui.SimpleLibrarySearcher
Set true if want not to display remote ontology
setSlider(String, int) - Method in class ptolemy.gui.Query
Set the position of an item that has been added using addSlider.
setSnapResolution(double) - Method in class ptolemy.vergil.basic.LocatableNodeController
Specify the snap resolution.
setSnapResolution(double) - Method in class ptolemy.vergil.basic.LocatableNodeDragInteractor
Specify the snap resolution.
setSnapResolution(double) - Method in class ptolemy.vergil.icon.ResizableAttributeControllerFactory.ResizeAttributeController
Specify the snap resolution.
setSnapResolution(double) - Method in class ptolemy.vergil.toolbox.AttributeBoundsManipulator
Set the snap resolution.
setSolutions(Vector) - Method in class ptolemy.vergil.unit.UnitSolverDialog.SolutionListModel
Set the solutions to the specified argument.
setSource(String) - Method in class org.kepler.objectmanager.data.text.TextDomain
 
setSource(String) - Method in interface ptolemy.kernel.util.MoMLExportable
Set the source, which gives an external URL associated with an entity (presumably from which the entity was defined).
setSource(String) - Method in class ptolemy.kernel.util.NamedObj
Set the source, which gives an external URL associated with an entity (presumably from which the entity was defined).
setSource(String) - Method in class ptolemy.moml.ImportAttribute
Deprecated.
Set the name of the external file being referenced.
setSource(NamedObj) - Method in class ptolemy.moml.unit.UnitConstraint
 
setSourceAction(Action) - Method in class org.kepler.gui.SearchUIJPanel
Sets the Action to be used when the Source button is pressed.
setSourceActor(String) - Method in class org.kepler.sms.actors.SimpleMergeMapping
Set the name of the source actor
setSourceActor(String) - Method in class org.kepler.sms.actors.SimpleMergeSourceActor
Sets the source actor name
setSourceActorPort(String) - Method in class org.kepler.sms.actors.SimpleMergeMapping
Set the name of the source actor port
setSourceActorPort(String) - Method in class org.kepler.sms.actors.SimpleMergeSourceActorPort
Sets the source actor port name
setSourceRespositoryName(String) - Static method in class org.kepler.workflowscheduler.gui.SchedulerAbstractAction
Set the sourceRepositoryName associated with the action
setSourceType(String) - Method in class org.kepler.reporting.rio.DynamicReportItem
 
setSpatial(String, String, String, String) - Method in class org.geon.LidarJobConfig
 
setSQL(String) - Method in class org.ecoinformatics.seek.dataquery.DataQueryAction
Set sql command
setSQL(String) - Method in class org.ecoinformatics.seek.dataquery.HsqlDataQueryAction
Set sql command
setSrid(String) - Method in class org.geon.LidarJobConfig
 
setSrmProtocol(String) - Method in class org.sdm.spa.actors.transport.SrmliteCopier
 
setsStart(int) - Method in class org.kepler.bio.util.BlastTabularResult
 
setStart(int) - Method in class org.kepler.tagging.Range
 
setStartDate(String) - Method in class org.kepler.util.WorkflowRunBuilder
 
setStarted(boolean) - Method in class org.kepler.monitor.figure.ProgressBarFigure
 
setStartNode(Node) - Method in interface ptolemy.graph.analysis.analyzer.SingleSourceLongestPathAnalyzer
Set the single source node of this analyzer to the given node.
setStartNode(Node) - Method in class ptolemy.graph.analysis.SingleSourceLongestPathAnalysis
Set the start-node of this analysis to the given node.
setStartNode(Node) - Method in class ptolemy.graph.analysis.strategy.AllEdgeSingleSourceLongestPathStrategy
Set the single source node (starting node) of this analyzer to the given node.
setStartTime(String) - Method in class org.kepler.workflowscheduler.gui.Schedule
Set the start time of the schedule
setStartTimeFormat(String) - Method in class org.kepler.workflowscheduler.gui.Schedule
Set the format of start time string.
setStartTimeLabel(String) - Method in class org.kepler.workflowscheduler.gui.Schedule
Set the start time label for display
setStartTimeZoneID(String) - Method in class org.kepler.workflowscheduler.gui.Schedule
Set the time zone id for the start time
setState(Object) - Method in class org.kepler.monitor.figure.StateFigure
Sets the current state of this figure.
setStateSerializer(StateSerializer) - Method in class org.kepler.provenance.ProvenanceRecorder
Set the state serializer for recordings.
setStateSerializer(StateSerializer) - Method in class org.kepler.provenance.Recording
Set the state serializer.
setStatus(String) - Method in class org.ecoinformatics.seek.querybuilder.QBApp
Set the status
setStatusHandler(StatusHandler) - Static method in class ptolemy.util.MessageHandler
Set the specified status handler, replacing any previously set handler.
setStatusMessage(String) - Method in class org.kepler.gis.display.JumpMapTab
Sets the statusMessage attribute of the JumpMapTab object
setStatusMessage(String) - Method in class ptolemy.actor.Manager
Set the status message, such as the amount of time consumed.
setStrAttr(StringAttribute, String, String) - Method in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreDataSource
Generic StringAttribute Setter
setStringMode(boolean) - Method in class ptolemy.data.expr.ParseTreeWriter
Specify whether the expression to write is in string mode.
setStringMode(boolean) - Method in class ptolemy.data.expr.Variable
Specify whether this parameter should be in string mode.
setSubdomain(String) - Method in class org.kepler.authentication.Domain
 
setSubjectId(String) - Method in class org.kepler.bio.util.BlastTabularResult
 
setSubmissionDate(String) - Method in class org.geon.LidarJobConfig
 
setSubmitFile(String, boolean) - Method in class org.kepler.job.Job
Give a predefined submit file for the job.
setSupportMultirate(boolean) - Method in class ptolemy.domains.modal.kernel.FSMActor
Set true indicating that this actor supports multirate firing.
setSuppressingPropagation(boolean) - Method in class ptolemy.actor.parameters.SharedParameter
Specify whether this instance should be suppressing propagation.
setSuppressVariableSubstitution(boolean) - Method in class ptolemy.data.expr.Variable
If the argument is true, then for a string mode parameter, suppress variable substitution.
setSystemEffigy(boolean) - Method in class ptolemy.actor.gui.Effigy
Set the effigy to be a system effigy if the given flag is true.
SETTABLE - Static variable in class org.ecoinformatics.seek.dataquery.DBTablesGenerator
 
setTable(DSTableIFace) - Method in class org.kepler.objectmanager.data.db.DSTableFieldDef
Sets the Parent DSTableDef object
setTable(DSTableDef) - Method in class org.kepler.objectmanager.data.db.DSTableKeyDef
Sets the Parent DSTableDef object
Settable - Interface in ptolemy.kernel.util
This is an interface for attributes that can have their values externally set.
Settable.Visibility - Class in ptolemy.kernel.util
Inner class used for the static enumeration of indicators of visibility.
setTableau(Tableau) - Method in class ptolemy.actor.gui.TableauFrame
Set the tableau associated with this frame.
setTableauFactory(TableauFactory) - Method in class ptolemy.actor.gui.Effigy
Specify a tableau factory that offers multiple views of this effigy.
setTableauTitle(String) - Method in interface ptolemy.actor.lib.gui.PlotterBaseInterface
Set the title of the tableau.
setTableauTitle(String) - Method in class ptolemy.actor.lib.gui.PlotterBaseJavaSE
Set the title of the tableau.
setTableId(int) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
Sets the table Id
setTableModelListener(TableModelListener) - Method in class org.ecoinformatics.seek.querybuilder.DBTableDesktopPane
Sets a single listener of TableModel Changes
setTableModelListener(TableModelListener) - Method in class org.ecoinformatics.seek.querybuilder.DBTableFrame
Sets a single listener of TableModel Changes
setTableModelListener(TableModelListener) - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneAdvanced
Sets the Model Listener appropriately
setTableModelListener(TableModelListener) - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneIntermediate
Sets the Model Listener appropriately
setTableModelListener(TableModelListener) - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
Sets the Model Listener appropriately
setTableName(DBSelectTableModelItem, int, Object) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelBase
Sets the table name, if the name is NO_NAME then it deletes the row in the model
setTableName(String) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
Sets the table name
SettableQueryChooser - Interface in ptolemy.gui
Interface for custom query chooser boxes.
setTableView(JTable) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableOverviewModel
Set the table's view
setTabName(String) - Method in class org.ecoinformatics.seek.ecogrid.EcogridPreferencesTab
 
setTabName(String) - Method in class org.ecoinformatics.seek.ecogrid.ServicesListModificationPanel
 
setTabName(String) - Method in class org.kepler.gui.BasicLibraryPane
 
setTabName(String) - Method in class org.kepler.gui.ComponentLibraryPreferencesTab
 
setTabName(String) - Method in class org.kepler.gui.ComponentLibraryTab
 
setTabName(String) - Method in class org.kepler.gui.kar.KARPreferencesTab
 
setTabName(String) - Method in class org.kepler.gui.TabPaneExtensionExample
 
setTabName(String) - Method in class org.kepler.gui.WorkflowOutlineTabPane
 
setTabName(String) - Method in class org.kepler.objectmanager.cache.browser.CacheViewerTabPane
 
setTabName(String) - Method in class org.kepler.profiling.gui.WorkflowRunOutlineTabPane
Set the name of the tab.
setTabName(String) - Method in class org.kepler.reporting.gui.PropertiesPanel
 
setTabName(String) - Method in class org.kepler.reporting.gui.ReportViewerPanel
 
setTabName(String) - Method in class org.kepler.workflowrunmanager.gui.WorkflowRunManagerPanel
 
setTabSize(int) - Method in class ptolemy.data.expr.SimpleCharStream
 
setTabSize(int) - Method in class ptolemy.moml.unit.SimpleCharStream
 
setTag(BooleanWritable) - Method in class org.kepler.hadoop.io.TaggedValue
 
setTag(NamedOntClass) - Method in class org.kepler.tagging.TagEvent
 
setTagBarUI(TagBarUI) - Method in class org.kepler.tagging.gui.TagBarDisplayUI
 
setTagBarUI(TagBarUI) - Method in class org.kepler.tagging.gui.TagBarInsertionUI
 
setTagBarUI(TagBarUI) - Method in class org.kepler.tagging.WindowIdentifier
 
setTaggingContext(TaggingContext) - Method in class org.kepler.tagging.TaggingContextManager
 
setTaggingContextLabel(TaggingContext) - Method in class org.kepler.tagging.gui.TagBarInsertionUI
 
setTagTarget(NamedObj) - Method in class org.kepler.tagging.gui.ExistingTagsPanel
 
setTagTarget(Collection<NamedObj>) - Method in class org.kepler.tagging.gui.ExistingTagsPanel
 
setTagTarget(NamedObj, ExistingTagsPanel) - Method in class org.kepler.tagging.TaggingContextManager
 
setTagTarget(NamedObj) - Method in class org.kepler.tagging.TaggingContextManager
 
setTagTarget(Collection<NamedObj>) - Method in class org.kepler.tagging.TaggingContextManager
 
setTail(Object, Object) - Method in class ptolemy.vergil.actor.ActorGraphModel.LinkModel
Connect the given edge to the given tail node.
setTail(Object) - Method in class ptolemy.vergil.kernel.Link
Set the tail of this link.
setTail(Object, Object) - Method in class ptolemy.vergil.modal.FSMGraphModel.ArcModel
Connect the given edge to the given tail node.
setTarget(NamedObj) - Method in class org.kepler.gui.TabbedLookInsideAction
Set the target to be opened.
setTarget(Entity) - Method in class ptolemy.actor.gui.PtolemyDialog
Set the target of this dialog.
setTargetPort(String) - Method in class org.kepler.sms.actors.SimpleMergeMapping
Set the name of the target port
setTargetPort(String) - Method in class org.kepler.sms.actors.SimpleMergeTargetPort
Sets the target port name
setTargetType(String) - Method in class org.kepler.gui.AbstractDialogTab
get the string representing this type of target, to be used in the resourcebundle keys.
setTempDir(File) - Method in class org.kepler.cloudsharing.util.WorkflowResults
Set the temporary directory for the results.
setTentativeState(double) - Method in class ptolemy.domains.continuous.kernel.ContinuousIntegrator
Set the tentative state.
setText(String) - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneSQL
Set the text in the text control for displaying the SQL
setText(String) - Method in class org.kepler.monitor.MonitorIcon
Sets the text for this icon
setText(String) - Method in class ptolemy.actor.gui.HTMLViewer
Set the text displayed by this viewer.
setText(String) - Method in class ptolemy.vergil.icon.TextIcon
Specify text to display.
setTextColor(Color) - Method in class ptolemy.vergil.icon.TextIcon
Specify the text color to use.
setTextHeight(int) - Method in class ptolemy.gui.Query
Specify the preferred height to be used for entry boxes created in using addTextArea().
setTextWidth(int) - Method in class ptolemy.gui.Query
Specify the preferred width to be used for entry boxes created in using addLine().
setThreshold(double) - Method in class ptolemy.actor.util.FuzzyDoubleComparator
Deprecated.
Set the fuzziness threshold.
setTimedRepaint(boolean) - Method in class ptolemy.plot.PlotBox
Set repainting with a certain fixed refresh rate.
setTimedRepaint(boolean) - Method in interface ptolemy.plot.PlotBoxInterface
Set repainting with a certain fixed refresh rate.
setTimeInMilliseconds(long) - Method in class ptolemy.data.DateToken
Set the time in milliseconds since January 1, 1970.
setTimeout(int, boolean, boolean) - Method in interface org.kepler.ssh.ExecInterface
Set timeout for the operations.
setTimeout(int) - Method in interface org.kepler.ssh.ExecInterface
Set timeout for the operations.
setTimeout(int, boolean, boolean) - Method in class org.kepler.ssh.GsiSshExec
 
setTimeout(int) - Method in class org.kepler.ssh.GsiSshExec
 
setTimeout(int, boolean, boolean) - Method in class org.kepler.ssh.LocalExec
Set timeout for the operations.
setTimeout(int) - Method in class org.kepler.ssh.LocalExec
 
setTimeout(int, boolean, boolean) - Method in class org.kepler.ssh.SshExec
Set timeout for the operations.
setTimeout(int) - Method in class org.kepler.ssh.SshExec
 
setTimeout(int) - Method in class org.sdm.spa.actors.transport.FileCopierBase
 
setTimeResolution(double) - Method in class ptolemy.actor.Director
Set time resolution.
setTimeResolution(double) - Method in class ptolemy.actor.LocalClock
Set time resolution.
setTimings(String, String, String) - Method in class org.geon.LidarJobConfig
 
Settings() - Constructor for class org.kepler.gis.actor.pylaski.PylaskiUtilities.Settings
Constructor
setTitle(String) - Method in class org.kepler.reporting.roml.ReportLayout
 
setTitle(String) - Method in class ptolemy.actor.gui.Tableau
Set the title of this tableau, changing the title of the associated top-level window.
setTitle(String) - Method in class ptolemy.actor.gui.WelcomeWindow
Always set the title to the string "Welcome".
setTitle(String) - Method in interface ptolemy.actor.lib.gui.DisplayInterface
Set the title of the window.
setTitle(String) - Method in class ptolemy.actor.lib.gui.DisplayJavaSE
Set the title of the window.
setTitle(String) - Method in class ptolemy.plot.PlotBox
Set the title of the graph.
setTitle(String) - Method in interface ptolemy.plot.PlotBoxInterface
Set the title of the graph.
setTitle(String, boolean) - Method in class ptolemy.vergil.basic.export.html.ExportHTMLAction
Set the title to be used for the page being exported.
setTitle(String, boolean) - Method in interface ptolemy.vergil.basic.export.web.WebExporter
Set the title to be used for the page being exported.
setTitleFont(String) - Method in class ptolemy.plot.PlotBox
Set the title font.
setTitleFont(String) - Method in interface ptolemy.plot.PlotBoxInterface
Set the title font.
setToken(Token) - Method in class ptolemy.actor.parameters.PortParameter
Override the base class to record the persistent expression to be the string representation of the specified token.
setToken(Token) - Method in class ptolemy.actor.parameters.SharedParameter
Override the base class to also set the token of shared parameters.
setToken(Token) - Method in class ptolemy.data.expr.ASTPtRootNode
Set the value of this node.
setToken(String) - Method in class ptolemy.data.expr.Variable
Set the expression for this variable by calling setExpression(), and then evaluate it by calling validate().
setToken(Token) - Method in class ptolemy.data.expr.Variable
Put a new token in this variable and notify the container and and value listeners.
setTokenConsumptionRate(IOPort, int) - Static method in class ptolemy.actor.util.DFUtilities
Set the tokenConsumptionRate parameter of the given port to the given rate.
setTokenConsumptionRate(int) - Method in class ptolemy.domains.sdf.kernel.SDFIOPort
Deprecated.
Set the number of tokens that are consumed on the appropriate port of this Actor during each firing by setting the value of the tokenConsumptionRate parameter.
setTokenInitConsumption(IOPort, int) - Static method in class ptolemy.actor.util.DFUtilities
Set the tokenInitConsumption parameter of the given port to the given rate.
setTokenInitProduction(IOPort, int) - Static method in class ptolemy.actor.util.DFUtilities
Set the tokenInitProduction parameter of the given port to the given rate.
setTokenInitProduction(int) - Method in class ptolemy.domains.sdf.kernel.SDFIOPort
Deprecated.
Set the number of tokens that are produced on the appropriate port of this Actor during initialize by setting the value of the tokenInitProduction parameter.
setTokenProductionRate(IOPort, int) - Static method in class ptolemy.actor.util.DFUtilities
Set the tokenProductionRate parameter of the given port to the given rate.
setTokenProductionRate(int) - Method in class ptolemy.domains.sdf.kernel.SDFIOPort
Deprecated.
Set the number of tokens that are produced on the appropriate port of this Actor during each firing by setting the value of the tokenProductionRate parameter.
setTokens(List) - Method in class ptolemy.actor.gui.TokenEffigy
Set the token array associated with this effigy.
setToolTip(String, String) - Method in class ptolemy.gui.Query
Specify a tool tip to appear when the mouse lingers over the label.
setTop(Top) - Method in class ptolemy.vergil.basic.layout.kieler.KielerLayout
Set the Top window to enable status reports on the status bar.
setToplevel(NamedObj) - Method in class ptolemy.moml.MoMLParser
Set the top-level entity.
setTopLevelLabel(String) - Method in class org.kepler.sms.NamedOntModel
 
setTransferSize(int) - Static method in class ptolemy.media.javasound.LiveSound
Set the array length (in samples per channel) to use for capturing and playing samples via the putSamples() and getSamples() methods.
setTransferSize(int) - Method in class ptolemy.media.javasound.LiveSoundCommon
Set the array length (in samples per channel) to use for capturing and playing samples via the putSamples() and getSamples() methods.
setTransferSize(int) - Method in interface ptolemy.media.javasound.LiveSoundInterface
Set the array length (in samples per channel) to use for capturing and playing samples via the putSamples() and getSamples() methods.
setTransition(Transition) - Method in class ptolemy.domains.modal.kernel.FSMTransitionParameter
Set the transition that corresponds to the parameters.
setTriggerExpression(String) - Method in class ptolemy.domains.modal.kernel.ia.InterfaceAutomatonTransition
Throw an exception.
setType(int) - Method in exception org.kepler.authentication.AuthenticationException
set the type of this exception
setType(String) - Method in class org.kepler.kar.KARCacheContent
 
setType(String) - Method in class org.kepler.kar.KAREntry
 
setType(String) - Method in class org.kepler.objectmanager.cache.CacheContent
 
setType(int) - Method in class org.kepler.objectmanager.library.LibItem
 
setType(String) - Method in class org.kepler.reporting.rio.Item
 
setType(String) - Method in class org.kepler.util.WorkflowRunBuilder
 
setType(Class) - Method in class org.mlc.swing.layout.BeanProperty
Registers the value of the type property
setType(Type) - Method in class ptolemy.data.expr.ASTPtRootNode
Set the type of this node.
setType(Type) - Method in class ptolemy.data.type.ArrayType
Set the type to the specified type, which is required to be an array type.
setType(int) - Method in class ptolemy.domains.modal.kernel.RelationNode
Set the type information with the current evaluation result of the relation node.
setType(int[]) - Method in class ptolemy.moml.unit.Unit
Set the type.
setTypeAtLeast(Typeable) - Method in class ptolemy.actor.TypedIOPort
Constrain the type of this port to be equal to or greater than the type of the specified Typeable object.
setTypeAtLeast(InequalityTerm) - Method in class ptolemy.actor.TypedIOPort
Constrain the type of this port to be equal to or greater than the type represented by the specified InequalityTerm.
setTypeAtLeast(InequalityTerm) - Method in class ptolemy.data.expr.Variable
Constrain the type of this variable to be equal to or greater than the type represented by the specified InequalityTerm.
setTypeAtLeast(Typeable) - Method in class ptolemy.data.expr.Variable
Constrain the type of this variable to be equal to or greater than the type of the specified object.
setTypeAtLeast(Typeable) - Method in interface ptolemy.data.type.Typeable
Constrain the type of this object to be equal to or greater than the type of the argument.
setTypeAtLeast(InequalityTerm) - Method in interface ptolemy.data.type.Typeable
Constrain the type of this object to be equal to or greater than the type represented by the specified InequalityTerm.
setTypeAtMost(Type) - Method in class ptolemy.actor.TypedIOPort
Constrain the type of this port to be equal to or less than the argument.
setTypeAtMost(Type) - Method in class ptolemy.data.expr.Variable
Set a type constraint that the type of this object be less than or equal to the specified class in the type lattice.
setTypeAtMost(Type) - Method in interface ptolemy.data.type.Typeable
Constrain the type of this object to be equal to or less than the argument.
setTypeEquals(Type) - Method in class ptolemy.actor.TypedIOPort
Set the type of this port.
setTypeEquals(Type) - Method in class ptolemy.data.expr.Variable
Set a type constraint that the type of this object equal the specified value.
setTypeEquals(Type) - Method in interface ptolemy.data.type.Typeable
Set a type constraint that the type of this object equal the specified value.
setTypeMap(Map<String, Type>) - Method in class org.kepler.hadoop.util.DDPPatternActorUtil
 
setTypeSameAs(Typeable) - Method in class ptolemy.actor.TypedIOPort
Constrain the type of this port to be the same as the type of the specified Typeable object.
setTypeSameAs(Typeable) - Method in class ptolemy.data.expr.Variable
Constrain the type of this variable to be the same as the type of the specified object.
setTypeSameAs(Typeable) - Method in interface ptolemy.data.type.Typeable
Constrain the type of this object to be the same as the type of the argument.
setUndoable(boolean) - Method in class ptolemy.moml.MoMLChangeRequest
Set whether or not this change is undoable.
setUndoable(boolean) - Method in class ptolemy.moml.MoMLParser
Set the current context as undoable.
setUndoable(boolean) - Method in class ptolemy.moml.UndoContext
Set whether or not the current context is undoable.
setUnit(Unit) - Method in class ptolemy.moml.unit.UnitTerm
Set the element to be a Unit.
setUnitCategory(int) - Method in class ptolemy.data.ScalarToken
Deprecated.
We need a better way of manufacturing the tokens for base units, since this method violates the immutability of tokens.
setUnitConstraints(UnitConstraints) - Method in class ptolemy.moml.unit.UnitAttribute
Set the UnitConstraints.
setUnitConverter(UnitConverter) - Static method in class com.jgoodies.forms.layout.Sizes
Sets a new UnitConverter that will be used to convert font-dependent sizes to pixel sizes.
setUnitExpr(UnitExpr) - Method in class ptolemy.moml.unit.UnitAttribute
Set the Unit Expression.
setUnitExpr(UnitExpr) - Method in class ptolemy.moml.unit.UnitTerm
Set the element to be a UnitExpr.
setUnknown(boolean) - Method in class ptolemy.data.expr.Variable
Mark the value of this variable to be unknown if the argument is true, or known if the argument is false.
setup(Mapper<WritableComparable, Writable, WritableComparable, Writable>.Context) - Method in class org.kepler.hadoop.mapreduce.Mapper4Cross
 
setup(Mapper<WritableComparable, Writable, WritableComparable, Writable>.Context) - Method in class org.kepler.hadoop.mapreduce.Mapper4DataTransform
 
setup(Mapper<WritableComparable, Writable, WritableComparable, Writable>.Context) - Method in class org.kepler.hadoop.mapreduce.Mapper4Match
 
setup(Mapper<WritableComparable, Writable, WritableComparable, TaggedValue>.Context) - Method in class org.kepler.hadoop.mapreduce.Mapper4TagValue
 
setup(Mapper<WritableComparable, Writable, WritableComparable, Writable>.Context) - Method in class org.kepler.hadoop.mapreduce.MapReduce4Kepler.Mapper4Kepler
 
setup(Reducer<WritableComparable, Writable, WritableComparable, Writable>.Context) - Method in class org.kepler.hadoop.mapreduce.MapReduce4Kepler.Reducer4Kepler
 
setup(Reducer<WritableComparable, TaggedValue, WritableComparable, Writable>.Context) - Method in class org.kepler.hadoop.mapreduce.Reducer4CoGroup
 
setup(Reducer<WritableComparable, TaggedValue, WritableComparable, Writable>.Context) - Method in class org.kepler.hadoop.mapreduce.Reducer4Match
 
setup() - Method in class org.kepler.tagging.gui.NonComboBoxTest
 
setUp() - Method in class ptolemy.util.test.junit.AutoCGCInlineTests
Find the ptolemy.cg.kernel.generic.GenericCodeGenerator class and its generateCode static method that takes an array of strings.
setUp() - Method in class ptolemy.util.test.junit.AutoCGCKnownFailedTests
Find the ptolemy.cg.kernel.generic.GenericCodeGenerator class and its generateCode static method that takes an array of strings.
setUp() - Method in class ptolemy.util.test.junit.AutoCGCNoInlineArduinoTests
Find the ptolemy.cg.kernel.generic.GenericCodeGenerator class and its generateCode static method that takes an array of strings.
setUp() - Method in class ptolemy.util.test.junit.AutoCGCNoInlineDuktapeTests
Find the ptolemy.cg.kernel.generic.GenericCodeGenerator class and its generateCode static method that takes an array of strings.
setUp() - Method in class ptolemy.util.test.junit.AutoCGCNoInlineTests
Find the ptolemy.cg.kernel.generic.GenericCodeGenerator class and its generateCode static method that takes an array of strings.
setUp() - Method in class ptolemy.util.test.junit.AutoCGCTests
Find the ptolemy.cg.kernel.generic.GenericCodeGenerator class and its generateCode static method that takes an array of strings.
setUp() - Method in class ptolemy.util.test.junit.AutoCGFMIMAKnownFailedTests
Find the ptolemy.cg.kernel.generic.GenericCodeGenerator class and its generateCode static method that takes an array of strings.
setUp() - Method in class ptolemy.util.test.junit.AutoCGFMIMANoInlineTests
Find the ptolemy.cg.kernel.generic.GenericCodeGenerator class and its generateCode static method that takes an array of strings.
setUp() - Method in class ptolemy.util.test.junit.AutoCGJavaKnownFailedTests
Find the ptolemy.cg.kernel.generic.GenericCodeGenerator class and its generateCode static method that takes an array of strings.
setUp() - Method in class ptolemy.util.test.junit.AutoCGJavaTests
Find the ptolemy.cg.kernel.generic.GenericCodeGenerator class and its generateCode static method that takes an array of strings.
setUp() - Method in class ptolemy.util.test.junit.AutoCGNoInlineAccessorTests
Find the ptolemy.cg.kernel.generic.GenericCodeGenerator class and its generateCode static method that takes an array of strings.
setUp() - Method in class ptolemy.util.test.junit.AutoCGTests
Find the ptolemy.cg.kernel.generic.GenericCodeGenerator class and its generateCode static method that takes an array of strings.
setupJob(JobContext) - Method in class org.kepler.hadoop.io.output.TokenOutputFormat.TokenOutputCommitter
 
setUpload(boolean) - Method in class org.kepler.gui.kar.ExportArchiveAction
Set false if you don't want user prompted to upload after save if they have a remote repository selected.
setupTask(TaskAttemptContext) - Method in class org.kepler.hadoop.io.output.TokenOutputFormat.TokenOutputCommitter
 
setURI(URI) - Method in class ptolemy.kernel.attributes.URIAttribute
Set the value of the URI, and call the attributeChanged() method of the container.
setURL(String) - Method in class org.kepler.objectmanager.data.db.Entity
 
setURL(String) - Method in class org.kepler.workflowscheduler.gui.WorkflowRunEngine
Set the url of the workflow run engine
setURL(URL) - Method in class ptolemy.kernel.attributes.URIAttribute
Set the value of the URI by specifying a URL, and call the attributeChanged() method of the container.
setUser(String) - Method in class org.kepler.util.WorkflowRunBuilder
 
setUser(String) - Method in class org.sdm.spa.actors.transport.vo.ConnectionDetails
 
setUserDefinedType(String) - Method in class org.kepler.reporting.rio.DynamicReportItem
 
setUserDefinedType(String, String) - Method in class org.kepler.reporting.rio.DynamicReportItem
 
setUserId(String) - Method in class org.geon.LidarJobConfig
 
setUserLevelDocumentation(String) - Method in class ptolemy.vergil.basic.KeplerDocumentationAttribute
Set the user level documentation.
setUserName(String) - Method in class org.kepler.authentication.AuthenticationService
 
setUsername(String) - Method in class org.kepler.authentication.Domain
 
setUserName(String) - Method in class org.kepler.authentication.ProxyEntity
 
setValid(boolean) - Method in class ptolemy.actor.sched.Scheduler
Validate/invalidate the current schedule by giving a true/false argument.
setValidator(PortConfigurerDialog.CellValidator) - Method in class ptolemy.actor.gui.PortConfigurerDialog.ValidatingComboBoxCellEditor
Set the validator.
setValidator(PortConfigurerDialog.CellValidator) - Method in class ptolemy.actor.gui.PortConfigurerDialog.ValidatingJTextFieldCellEditor
Set the validator.
setVAlignment(CellConstraints.Alignment) - Method in class com.jgoodies.forms.builder.AbstractFormBuilder
Sets the vertical alignment.
setValue(String) - Method in class org.camera.service.NameValuePair
 
setValue(String) - Method in class org.kepler.actor.rest.NameValuePair
 
setValue(String) - Method in class org.kepler.configuration.ConfigurationProperty
set the value of this property
setValue(Writable) - Method in class org.kepler.hadoop.io.KeyValuePair
 
setValue(int) - Method in class org.kepler.monitor.figure.ProgressBarFigure
Sets the current value, which is meaningful only for a determinate progress bar.
setValue(String) - Method in class org.kepler.reporting.rio.ItemLabel
 
setValue(Token) - Method in class org.kepler.reporting.rio.ItemValue
 
setValue(byte[], int, int) - Method in class org.kepler.stratosphere.type.ByteArray
 
setValue(byte[]) - Method in class org.kepler.stratosphere.type.ByteArray
 
setValue(Object) - Method in class org.kepler.workflowrunmanager.gui.FormatRenderer
 
setValue(Token) - Method in interface ptolemy.actor.lib.gui.TextFieldContainerInterface
Set the text to the value of the token.
setValue(Token) - Method in class ptolemy.actor.lib.gui.TextFieldContainerJavaSE
Set the text to the value of the token.
setValue(Object) - Method in class ptolemy.data.type.MonotonicFunction
Throw an Exception.
setValue(Object) - Method in class ptolemy.data.type.TypeConstant
Throw IllegalActionException since the value of this term cannot be changed.
setValue(Object) - Method in interface ptolemy.graph.InequalityTerm
Set the value of this term to the specified CPO element.
setValue(Object) - Method in class ptolemy.graph.test.TestConstant
Throw an Exception.
setValue(Object) - Method in class ptolemy.graph.test.TestVariable
Set the value of this variable to the specified String.
setValue(String) - Method in class ptolemy.moml.Documentation
Set the documentation string.
setValueAt(Object, int, int) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelAdv
Sets a new value into the Model
setValueAt(Object, int, int) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelBase
Sets a new value into the Model
setValueAt(Object, int, int) - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelStd
Sets a new value into the Model
setValueAt(Object, int, int) - Method in class org.kepler.gui.ComponentLibraryPreferencesTab.ComponentSourceTableModel
 
setValueByIndex(int, Object) - Method in class org.kepler.plotting.Row
 
setValueListenerAsWeakDependency(ValueListener) - Method in class ptolemy.data.expr.Variable
Set a value listener as a weak dependency.
setValues(List<ItemValue>) - Method in class org.kepler.reporting.rio.Item
 
setValues(double[]) - Method in class ptolemy.math.Interpolation
Set the reference values.
SetVariable - Class in ptolemy.actor.lib
Set the value of a variable.
SetVariable(Workspace) - Constructor for class ptolemy.actor.lib.SetVariable
Construct an actor in the specified workspace with an empty string as a name.
SetVariable(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.SetVariable
Construct an actor with the given container and name.
setVariable(String) - Method in class ptolemy.moml.unit.UnitTerm
Set the element to be a variable
setVars(Ensemble) - Method in class org.kepler.data.conversion.binary.EnsembleActor
 
setVersion(String) - Method in class org.kepler.kar.KARCached
 
setVersion(String) - Method in class org.kepler.kar.KARCacheError
 
setVersion(String) - Method in class org.kepler.kar.KARFile
Set the version of the KARFile.
setVersion(String) - Method in class ptolemy.vergil.basic.KeplerDocumentationAttribute
Set the version.
setView() - Method in class org.kepler.reporting.rio.StaticReportItem
 
setView() - Method in class org.kepler.reporting.rio.StaticReportItemHR
 
setView() - Method in class org.kepler.reporting.rio.StaticReportItemImage
 
setView() - Method in class org.kepler.reporting.rio.StaticReportItemLabel
 
setView() - Method in class org.kepler.reporting.rio.StaticReportItemSection
 
setView() - Method in class org.kepler.reporting.rio.StaticReportItemText
 
setViewComboBox(TableauFrame, JComboBox) - Method in class org.kepler.gui.ViewManager
Set the JComboBox for a specific TableauFrame
setViewName(String) - Method in class org.kepler.gui.ClassicViewPane
 
setViewName(String) - Method in class org.kepler.gui.DefaultViewPane
 
setViewName(String) - Method in class org.kepler.gui.DualVerticalViewPane
 
setViewName(String) - Method in class org.kepler.gui.SingleViewPane
 
setViewPortSize(int) - Method in class org.sdm.spa.actors.piw.viz.OverviewPanel
 
setVisibility(Settable.Visibility) - Method in class org.kepler.moml.DependencyAttribute
this method does not change the visibility.
setVisibility(Settable.Visibility) - Method in class org.kepler.moml.NamedObjId
this method does not change the visibility.
setVisibility(Settable.Visibility) - Method in class org.kepler.moml.PortAttribute
this method does not change the visibility.
setVisibility(Settable.Visibility) - Method in class org.kepler.sms.KeplerIOPortReference
The visibility cannot be changed.
setVisibility(Settable.Visibility) - Method in class org.kepler.sms.KeplerVirtualIOPortReference
The visibility cannot be changed.
setVisibility(Settable.Visibility) - Method in class org.kepler.sms.SemanticProperty
this method does not change the visibility.
setVisibility(Settable.Visibility) - Method in class org.kepler.sms.SemanticTypeDefinition
this method does not change the visibility.
setVisibility(Settable.Visibility) - Method in class ptolemy.actor.LocalClock
This method has to be implemented for the AbstractSettableAttribute interface.
setVisibility(Settable.Visibility) - Method in class ptolemy.data.expr.Variable
Set the visibility of this variable.
setVisibility(Settable.Visibility) - Method in class ptolemy.domains.modal.kernel.FSMTransitionParameter
Set visibility.
setVisibility(Settable.Visibility) - Method in class ptolemy.kernel.util.ConfigurableAttribute
Set the visibility of this attribute.
setVisibility(Settable.Visibility) - Method in class ptolemy.kernel.util.Location
Set the visibility of this attribute.
setVisibility(Settable.Visibility) - Method in interface ptolemy.kernel.util.Settable
Set the visibility of this Settable.
setVisibility(Settable.Visibility) - Method in class ptolemy.kernel.util.StringAttribute
Set the visibility of this attribute.
setVisibility(Settable.Visibility) - Method in class ptolemy.moml.unit.UnitAttribute
Set the visibility of this attribute.
setVisibility(Settable.Visibility) - Method in class ptolemy.vergil.actor.LayoutHint
Set the visibility of this attribute.
setVisibility(Settable.Visibility) - Method in class ptolemy.vergil.actor.lib.MonitorReceiverAttribute
Set the visibility of this Settable.
setVisibility(Settable.Visibility) - Method in class ptolemy.vergil.kernel.attributes.AttributeValueAttribute
Set the visibility of this Settable.
setVisible(boolean) - Method in class org.kepler.workflowrunmanager.gui.ColumnGroup
 
setVisible(boolean) - Method in class ptolemy.plot.PlotFrame
Set the visibility.
setWaitForLastSubprocess(boolean) - Method in class ptolemy.util.StreamExec
Determine whether the last subprocess is waited for or not.
setWaitingThread(Thread) - Method in class ptolemy.actor.Manager
Indicate that the specified thread is waiting and can be interrupted in the event that a change request is made.
setWarningMsg(String) - Method in class org.sdm.spa.actors.transport.FileCopierBase.CopyResult
 
setWebName(String) - Method in class ptolemy.vergil.basic.export.web.WebAttribute
Set the web name of this element; for example, "myElement" in <div name="myElement"> </div> in HTML.
setWebName(String) - Method in class ptolemy.vergil.basic.export.web.WebElement
Set the web name of this element; for example, "myElement" in <div name="myElement"/> in HTML.
setWeight(Object) - Method in class ptolemy.graph.Element
Set or change the weight of an element.
setWhere(DBWhereIFace) - Method in class org.ecoinformatics.seek.querybuilder.DBQueryDef
Sets the where object
setWidth(int) - Method in class ptolemy.actor.IORelation
Set the width of this relation and all relations in its relation group.
setWidthEquals(Parameter) - Method in class ptolemy.actor.IOPort
Constrain the width of this port to be equal to the parameter.
setWidthEquals(IOPort, boolean) - Method in class ptolemy.actor.IOPort
Constrain the width of this port to be equal to the width of the IOPort port.
setWorkdir(String) - Method in class org.kepler.job.Job
Set the (remote) working directory.
setWorkdir(String, boolean) - Method in class org.kepler.job.Job
Set the (remote) working directory.
setWorkflow(CompositeEntity) - Method in class org.kepler.gui.WorkflowOutlineTabPane
Change the root of the workflow displayed in the tab.
setWorkflowForScheduling(String, String, String, String, boolean) - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerPanel
Pass a workflow information to the scheulder.
setWorkflowId(String) - Method in class org.kepler.workflowscheduler.gui.Schedule
Set the workflwo id to this schedule
setWorkflowId(String) - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerPanel
Set the workflow id (LSID format)
setWorkflowJobName(String) - Method in class org.kepler.workflowscheduler.gui.Schedule
Set the workflow job name
setWorkflowLocation(Repository) - Method in class org.kepler.workflowscheduler.gui.Schedule
Set the workflow location repository
setWorkflowLSID(String) - Method in class org.kepler.objectmanager.cache.CacheNamedObj
 
setWorkflowLSID(String) - Method in class org.kepler.objectmanager.repository.EcogridRepositoryLibrarySearcher.NondraggableTreeItem
 
setWorkflowLSID(KeplerLSID) - Method in class org.kepler.reporting.roml.ReportLayout
 
setWorkflowLSID(String) - Method in class org.kepler.util.WorkflowRunBuilder
 
setWorkflowLSID(String) - Method in class org.kepler.workflowscheduler.gui.LocalRemoteWorkflowMap
 
setWorkflowName(String) - Method in class org.kepler.objectmanager.cache.CacheNamedObj
 
setWorkflowName(String) - Method in class org.kepler.objectmanager.repository.EcogridRepositoryLibrarySearcher.NondraggableTreeItem
 
setWorkflowName(String) - Method in class org.kepler.util.WorkflowRunBuilder
 
setWorkflowName(String) - Method in class org.kepler.workflowscheduler.gui.LocalRemoteWorkflowMap
 
setWorkflowName(String) - Method in class org.kepler.workflowscheduler.gui.Schedule
Set workflow name to this schedule object
setWorkflowRunDestination(Repository) - Method in class org.kepler.workflowscheduler.gui.Schedule
Set the destination repository which will store the workflow run
setWorkflowRunEngine(WorkflowRunEngine) - Method in class org.kepler.workflowscheduler.gui.Schedule
Set the workflow run engine which will run the workflow
setWorkflowRuns(ArrayList<WorkflowRun>) - Method in class org.kepler.workflowrunmanager.WorkflowRunManager
 
setWorkingDirectory(File) - Method in class ptolemy.gui.JTextAreaExec
Set the working directory of the subprocess.
setWorkingDirectory(File) - Method in interface ptolemy.util.ExecuteCommands
Set the working directory of the subprocess.
setWorkingDirectory(File) - Method in class ptolemy.util.StreamExec
Set the working directory of the subprocess.
setWorkspace(Workspace) - Static method in class org.kepler.kar.KarDoclet
 
setWrap(boolean) - Method in class ptolemy.plot.PlotBox
Specify whether the X axis is wrapped.
setWrap(boolean) - Method in interface ptolemy.plot.PlotBoxInterface
Specify whether the X axis is wrapped.
setWriter(Writer) - Method in class ptolemy.actor.lib.Writer
Deprecated.
Set the writer.
setWsdlURL(String) - Method in class org.ecoinformatics.seek.ecogrid.EcoGridService
Set wsdl url for this service
setXLabel(String) - Method in class ptolemy.plot.PlotBox
Set the label for the X (horizontal) axis.
setXLabel(String) - Method in interface ptolemy.plot.PlotBoxInterface
Set the label for the X (horizontal) axis.
setXLog(boolean) - Method in class ptolemy.plot.PlotBox
Specify whether the X axis is drawn with a logarithmic scale.
setXLog(boolean) - Method in interface ptolemy.plot.PlotBoxInterface
Specify whether the X axis is drawn with a logarithmic scale.
setXml(String) - Method in class org.kepler.hadoop.util.DDPPatternActorUtil
 
setXORMode(Color) - Method in class ptolemy.plot.EPSGraphics
 
setXPersistence(double) - Method in class ptolemy.plot.Plot
Calling this method with a positive argument sets the persistence of the plot to the given width in units of the horizontal axis.
setXPersistence(double) - Method in interface ptolemy.plot.PlotInterface
Calling this method with a positive argument sets the persistence of the plot to the given width in units of the horizontal axis.
setXRange(double, double) - Method in class ptolemy.plot.PlotBox
Set the X (horizontal) range of the plot.
setXRange(double, double) - Method in interface ptolemy.plot.PlotBoxInterface
Set the X (horizontal) range of the plot.
setXslt(String) - Method in class org.kepler.reporting.gui.ReportViewerPanel
 
setYLabel(String) - Method in class ptolemy.plot.PlotBox
Set the label for the Y (vertical) axis.
setYLabel(String) - Method in interface ptolemy.plot.PlotBoxInterface
Set the label for the Y (vertical) axis.
setYLog(boolean) - Method in class ptolemy.plot.PlotBox
Specify whether the Y axis is drawn with a logarithmic scale.
setYLog(boolean) - Method in interface ptolemy.plot.PlotBoxInterface
Specify whether the Y axis is drawn with a logarithmic scale.
setYRange(double, double) - Method in class ptolemy.plot.PlotBox
Set the Y (vertical) range of the plot.
setYRange(double, double) - Method in interface ptolemy.plot.PlotBoxInterface
Set the Y (vertical) range of the plot.
setZeroReference(Object) - Method in interface ptolemy.actor.util.CQComparator
Set the zero reference, to be used in calculating the virtual bin number.
setZeroReference(Object) - Method in class ptolemy.actor.util.test.DoubleCQComparator
Set the zero reference, to be used in calculating the virtual bin number.
setZeroReference(Object) - Method in class ptolemy.actor.util.TimedEvent.TimeComparator
Set the zero reference, to be used in calculating the virtual bin number.
setZeroTrap(boolean) - Static method in class ptolemy.media.Audio
Configure all instances of this class to use the MIL-STD zero trap.
SftpCopier - Class in org.sdm.spa.actors.transport
SFTP provides functionality to copy files, regular expressions, directories(with dir: option).
SftpCopier() - Constructor for class org.sdm.spa.actors.transport.SftpCopier
 
SftpExec - Class in org.kepler.ssh
Class to handle file transfer based on sftp protocol.
SftpExec(String, String) - Constructor for class org.kepler.ssh.SftpExec
Creates session with give user and host name and default port
SftpExec(String, String, int) - Constructor for class org.kepler.ssh.SftpExec
Creates a session with given user name, host and port
SGet - Class in org.srb
SGet is a Kepler Actor which has a functionality similar to the SRB command namely "Sget".
SGet(CompositeEntity, String) - Constructor for class org.srb.SGet
Construct a constant source with the given container and name.
SGetPhysicalLocation - Class in org.srb
Get the physical location of SRB files.
SGetPhysicalLocation(CompositeEntity, String) - Constructor for class org.srb.SGetPhysicalLocation
Construct a constant source with the given container and name.
sgn(double) - Static method in class ptolemy.math.ExtendedMath
If the argument is less than zero, return -1, otherwise return 1.
ShadowHighlighter - Class in ptolemy.vergil.kernel
A decorator figure that displays a shadow behind the figure.
ShadowHighlighter() - Constructor for class ptolemy.vergil.kernel.ShadowHighlighter
Create a new shadow with a default paint and size.
ShadowHighlighter(Paint, float) - Constructor for class ptolemy.vergil.kernel.ShadowHighlighter
Create a new shadow with the given paint and halo.
ShadowHighlighter(Paint, float, Composite) - Constructor for class ptolemy.vergil.kernel.ShadowHighlighter
Create a new shadow with the given paint, size.
ShadowHighlighter(Paint, float, Composite, Stroke) - Constructor for class ptolemy.vergil.kernel.ShadowHighlighter
Create a new shadow with the given paint, size, compositing operation, and stroke.
ShadowRenderer - Class in ptolemy.vergil.kernel
Provide a shadow for icons.
ShadowRenderer() - Constructor for class ptolemy.vergil.kernel.ShadowRenderer
Create a new selection renderer with the default prototype decorator.
ShadowRenderer(Color) - Constructor for class ptolemy.vergil.kernel.ShadowRenderer
Create a new renderer with the given color.
ShapeAttribute - Class in ptolemy.vergil.kernel.attributes
This is an abstract attribute that is rendered as a shape.
ShapeAttribute(NamedObj, String) - Constructor for class ptolemy.vergil.kernel.attributes.ShapeAttribute
Construct an attribute with the given name contained by the specified container.
ShapeIcon - Class in ptolemy.vergil.icon
An icon that displays a specified java.awt.Shape.
ShapeIcon(NamedObj, String) - Constructor for class ptolemy.vergil.icon.ShapeIcon
Create a new icon with the given name in the given container.
ShapeIcon(NamedObj, String, Shape) - Constructor for class ptolemy.vergil.icon.ShapeIcon
Create a new icon with the given name in the given container with the given default shape.
sharedBuffers() - Method in interface ptolemy.domains.sdf.optimize.BufferingProfile
returns the number of buffers required upon calling shared fire in excess of the input and output buffer.
sharedBuffers() - Method in class ptolemy.domains.sdf.optimize.lib.DummyDisplay
Provides the buffering profile, number of buffers required for a shared firing.
sharedBuffers() - Method in class ptolemy.domains.sdf.optimize.lib.DummySource
Provides the buffering profile, number of buffers required for a shared firing.
sharedBuffers() - Method in class ptolemy.domains.sdf.optimize.SharedBufferTransformer
Default value for number of frame buffers required for shared firing.
SharedBufferTransformer - Class in ptolemy.domains.sdf.optimize
An abstract ancestor class to be used for filters using references to shared data frames.
SharedBufferTransformer(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.optimize.SharedBufferTransformer
Construct an instance of a SharedBufferTransformer.
sharedExecutionTime() - Method in interface ptolemy.domains.sdf.optimize.BufferingProfile
returns (an estimate of) the execution time of a shared buffer firing of the actor.
sharedExecutionTime() - Method in class ptolemy.domains.sdf.optimize.lib.DummyDisplay
Provides the buffering profile, execution time estimate required for a shared firing.
sharedExecutionTime() - Method in class ptolemy.domains.sdf.optimize.lib.DummySource
Provides the buffering profile, execution time estimate required for a shared firing.
sharedExecutionTime() - Method in class ptolemy.domains.sdf.optimize.SharedBufferTransformer
Default value for execution time for shared firing.
SharedLog - Class in org.kepler.io
Log information directed into a file.
SharedLog(boolean) - Constructor for class org.kepler.io.SharedLog
 
SharedParameter - Class in ptolemy.actor.parameters
This parameter is shared throughout a model.
SharedParameter(NamedObj, String) - Constructor for class ptolemy.actor.parameters.SharedParameter
Construct a parameter with the given container and name.
SharedParameter(NamedObj, String, Class<?>) - Constructor for class ptolemy.actor.parameters.SharedParameter
Construct a parameter with the given container, name, and container class.
SharedParameter(NamedObj, String, Class<?>, String) - Constructor for class ptolemy.actor.parameters.SharedParameter
Construct a parameter with the given container, name, container class, and default value.
SharedParameterJUnitTest - Class in ptolemy.actor.parameters.test.junit
Tests for SharedParameter.
SharedParameterJUnitTest() - Constructor for class ptolemy.actor.parameters.test.junit.SharedParameterJUnitTest
 
sharedParameterSet() - Method in class ptolemy.actor.parameters.SharedParameter
Return a collection of all the shared parameters within the same model as this parameter.
sharedParameterSet() - Method in class ptolemy.actor.parameters.test.TestSharedParameter
Return a collection of all the shared parameters within the same model as this parameter.
sharedParameterSetCount - Variable in class ptolemy.actor.parameters.test.TestSharedParameter
 
SharedQueue - Class in ptolemy.domains.de.lib
A queue that outputs the next token to an output channel that is ready to receive it.
SharedQueue(CompositeEntity, String) - Constructor for class ptolemy.domains.de.lib.SharedQueue
Construct an actor with the given container and name.
ShareResultsToCloudDialog - Class in org.kepler.cloudsharing.gui
A dialog to upload and share workflow results to the cloud.
ShareResultsToCloudDialog(Frame) - Constructor for class org.kepler.cloudsharing.gui.ShareResultsToCloudDialog
 
ShareToCloud - Class in org.kepler.cloudsharing.actor
An actor that records file names to be uploaded to the cloud.
ShareToCloud(Workspace) - Constructor for class org.kepler.cloudsharing.actor.ShareToCloud
Create a new ShareToCloud in the specified workspace.
ShareToCloud(CompositeEntity, String) - Constructor for class org.kepler.cloudsharing.actor.ShareToCloud
Create a new ShareToCloud in specified container with the specified name.
shareWith(String) - Method in class org.kepler.cloudsharing.util.WorkflowResults
Share the collection with a set of emails.
shell - Variable in class org.sdm.spa.TextualInteractionShell
The shell window object.
shell - Variable in class ptolemy.actor.gui.ExpressionShellTableau
The contained shell.
shell - Variable in class ptolemy.actor.lib.gui.InteractiveShell
The shell window object.
shell1 - Variable in class org.sdm.spa.gui.DoubleShellTextAreaPanel
 
shell1 - Variable in class org.sdm.spa.TextualInteractionShell
 
shell2 - Variable in class org.sdm.spa.gui.DoubleShellTextAreaPanel
 
ShellFactory(CompositeEntity, String) - Constructor for class org.sdm.spa.gui.DoubleShellTAPEffigy.ShellFactory
Create a factory with the given name and container.
ShellFactory(CompositeEntity, String) - Constructor for class ptolemy.actor.gui.exec.ExecShellEffigy.ShellFactory
Create a factory with the given name and container.
ShellFactory(CompositeEntity, String) - Constructor for class ptolemy.actor.gui.ExpressionShellEffigy.ShellFactory
Create a factory with the given name and container.
ShellFactory(CompositeEntity, String) - Constructor for class ptolemy.actor.gui.ptjacl.TclShellEffigy.ShellFactory
Create a factory with the given name and container.
ShellFactory(CompositeEntity, String) - Constructor for class ptolemy.actor.gui.python.PythonShellEffigy.ShellFactory
Create a factory with the given name and container.
ShellFrame(DoubleShellTAPTableau) - Constructor for class org.sdm.spa.gui.UserInteractiveShell.ShellFrame
Construct a frame to display the ExpressionShell window.
ShellFrame(ExpressionShellTableau) - Constructor for class org.sdm.spa.TextualInteractionShell.ShellFrame
Construct a frame to display the ExpressionShell window.
ShellFrame(ExpressionShellTableau) - Constructor for class ptolemy.actor.lib.gui.InteractiveShell.ShellFrame
Construct a frame to display the ExpressionShell window.
ShellInterpreter - Interface in ptolemy.gui
An interface for interpreters that work with the ShellTextArea.
shellPanel - Variable in class org.sdm.spa.gui.DoubleShellTAPTableau
The contained shell.
shellPanel - Variable in class org.sdm.spa.gui.UserInteractiveShell
The shell window object.
ShellTableau(DoubleShellTAPEffigy, String) - Constructor for class org.sdm.spa.gui.UserInteractiveShell.ShellTableau
Construct a new tableau for the model represented by the given effigy.
ShellTableau(ExpressionShellEffigy, String) - Constructor for class org.sdm.spa.TextualInteractionShell.ShellTableau
Construct a new tableau for the model represented by the given effigy.
ShellTableau(ExpressionShellEffigy, String) - Constructor for class ptolemy.actor.lib.gui.InteractiveShell.ShellTableau
Construct a new tableau for the model represented by the given effigy.
shellTextArea - Variable in class ptolemy.actor.gui.exec.ExecShellTableau.ExecShellFrame
The text area tableau used for input and output.
shellTextArea - Variable in class ptolemy.actor.gui.ptjacl.TclShellTableau.TclShellFrame
The text area tableau used for input and output.
ShellTextArea - Class in ptolemy.gui
A text area supporting shell-style interactions.
ShellTextArea() - Constructor for class ptolemy.gui.ShellTextArea
Create a new instance with no initial message.
ShellTextArea(String) - Constructor for class ptolemy.gui.ShellTextArea
Create a new instance with the specified initial message.
shift() - Method in class ptolemy.data.expr.PtParser
 
shiftArithmetic(int[], int) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array that is constructed from the argument by arithmetically shifting the elements in the array by the second argument.
shiftArithmetic(int[][], int) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new matrix that is constructed from the argument by arithmetically shifting the elements in the matrix by the second argument.
shiftArithmetic(long[], int) - Static method in class ptolemy.math.LongArrayMath
Return a new array that is constructed from the argument by arithmetically shifting the elements in the array by the second argument.
shiftArithmetic(long[][], int) - Static method in class ptolemy.math.LongMatrixMath
Return a new matrix that is constructed from the argument by arithmetically shifting the elements in the matrix by the second argument.
shiftBigDecimal(BigDecimal, int) - Static method in class ptolemy.math.Precision
Shift the BigDecimal value either right or left by a power of 2 value.
shiftLogical(int[], int) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array that is constructed from the argument by logically shifting the elements in the array by the second argument.
shiftLogical(int[][], int) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new matrix that is constructed from the argument by logically shifting the elements in the matrix by the second argument.
shiftLogical(long[], int) - Static method in class ptolemy.math.LongArrayMath
Return a new array that is constructed from the argument by logically shifting the elements in the array by the second argument.
shiftLogical(long[][], int) - Static method in class ptolemy.math.LongMatrixMath
Return a new matrix that is constructed from the argument by logically shifting the elements in the matrix by the second argument.
shiftX - Variable in class org.geon.SVGConcat
Relative shift over the X coordinate during concatenation.
shiftY - Variable in class org.geon.SVGConcat
Relative shift over the Y coordinate during concatenation.
SHL - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
SHORT - Static variable in class ptolemy.data.type.BaseType
The short integer data type.
shortDescription(Throwable) - Static method in class ptolemy.actor.Manager
Deprecated.
Instead ptolemy.util.MessageHandler.shortDescription()
shortDescription(Throwable) - Static method in class ptolemy.util.MessageHandler
Return a short description of the throwable.
shortestPath(Node, Node) - Method in class ptolemy.graph.analysis.AllPairShortestPathAnalysis
Return the nodes on the shortest path from the node "startNode" to the node "endNode" in the form of an ordered list.
shortestPath(Node, Node) - Method in interface ptolemy.graph.analysis.analyzer.AllPairShortestPathAnalyzer
Return the nodes on the shortest path from the node "startNode" to the node "endNode" in the form of an ordered list.
shortestPath(Node, Node) - Method in class ptolemy.graph.analysis.strategy.FloydWarshallAllPairShortestPathStrategy
Return the nodes on the shortest path from the node startNode to the node endNode in the form of an ordered list.
shortestPathLength(Node, Node) - Method in class ptolemy.graph.analysis.AllPairShortestPathAnalysis
Return the length of the shortest path from the node startNode to the node endNode.
shortestPathLength(Node, Node) - Method in interface ptolemy.graph.analysis.analyzer.AllPairShortestPathAnalyzer
Return the length of the shortest path from the node startNode to the node endNode.
shortestPathLength(Node, Node) - Method in class ptolemy.graph.analysis.strategy.FloydWarshallAllPairShortestPathStrategy
Return the length of the shortest path from the node startNode to the node endNode.
shortestPathMatrix() - Method in class ptolemy.graph.analysis.AllPairShortestPathAnalysis
Return a matrix representing the result of the all pair shortest path algorithm.
shortestPathMatrix() - Method in interface ptolemy.graph.analysis.analyzer.AllPairShortestPathAnalyzer
A matrix representing the result of the all pair shortest path algorithm.
shortestPathMatrix() - Method in class ptolemy.graph.analysis.strategy.FloydWarshallAllPairShortestPathStrategy
Return the all pair shortest path of the graph in the form of two dimensional array (matrix).
ShortToken - Class in ptolemy.data
A token that contains a signed 16-bit integer number.
ShortToken() - Constructor for class ptolemy.data.ShortToken
Construct a token with short 0.
ShortToken(short) - Constructor for class ptolemy.data.ShortToken
Construct a token with the specified value.
ShortToken(int) - Constructor for class ptolemy.data.ShortToken
Construct a ShortToken with the specified integer value.
ShortToken(String) - Constructor for class ptolemy.data.ShortToken
Construct an ShortToken from the specified string.
shortValue() - Method in class ptolemy.data.ScalarToken
Return the value of this token as a short.
shortValue() - Method in class ptolemy.data.ShortToken
Return the value in the token as a short.
shortValue() - Method in class ptolemy.data.UnsignedByteToken
Return the value in the token as a short.
shouldDisplay() - Method in class org.kepler.modulemanager.gui.patch.UpgradeDialogPanel
 
shouldHttpServerRedirect() - Static method in class org.kepler.webview.server.WebViewConfiguration
 
shouldSelectCell(EventObject) - Method in class org.kepler.plotting.table.ColorTableCellEditor
 
shouldSelectCell(EventObject) - Method in class org.kepler.tagging.gui.ColorTableCellEditor
 
shouldStartCluster() - Static method in class org.kepler.webview.server.WebViewConfiguration
Get if vertx should start in clustered mode.
shouldStartClusterHazelcast() - Static method in class org.kepler.webview.server.WebViewConfiguration
Get if vertx should use hazelcast for clustered mode.
shouldStartHttpServer() - Static method in class org.kepler.webview.server.WebViewConfiguration
Returns true if the web view http server should start.
shouldStartHttpServerAsDaemon() - Static method in class org.kepler.webview.server.WebViewConfiguration
Returns true if the web view http server should start in daemon mode.
show() - Method in class org.kepler.gui.component.ShowFolders
 
show() - Method in class org.kepler.gui.frame.TabbedKeplerGraphTableau
Make this tableau visible by calling setVisible(true), and raising or deiconifying its window.
show(Sequence[]) - Method in class org.sdm.spa.actors.piw.viz.VizApplication
 
show() - Method in class ptolemy.actor.gui.BrowserTableau
Make this tableau visible by calling BrowserLauncher.openURL(String) with URI from the effigy.
show() - Method in class ptolemy.actor.gui.ExternalTextEffigy
Signal the external text editor to (re)display its buffer associated with this effigy.
show() - Method in class ptolemy.actor.gui.ExternalTextTableau
Make this tableau visible - by calling show() on the container (ExternalTextEffigy).
show() - Method in class ptolemy.actor.gui.PlotTableau
Make this tableau visible by calling setVisible(true), and raising or deiconifying its window.
show() - Method in class ptolemy.actor.gui.Tableau
Make this tableau visible by calling setVisible(true), and raising or deiconifying its window.
show() - Method in class ptolemy.actor.gui.TextEditorTableau
Make this tableau visible by calling setVisible(true), and raising or deiconifying its window.
show() - Method in class ptolemy.actor.gui.WelcomeWindow
Show the window if the _showWelcomeWindowAtStartup parameter is not set or is true.
show() - Method in class ptolemy.gui.Top
Override the base class to deiconify the window, if necessary.
show() - Method in class ptolemy.vergil.tree.TreeTableau
Make this tableau visible by calling setVisible(true), and raising or deiconifying its window.
SHOW_HORIZONTAL_LINES - Static variable in class org.kepler.workflowrunmanager.WRMDefaults
 
SHOW_VERTICAL_LINES - Static variable in class org.kepler.workflowrunmanager.WRMDefaults
 
SHOW_VIEW - Static variable in class org.kepler.gui.state.ViewStateChangeEvent
 
showAll() - Method in class org.kepler.gui.SubsetWorkflowOutlineTreeModel
Show everything in the tree.
showAll() - Method in class ptolemy.actor.gui.Configuration
Find all instances of Tableau deeply contained in the directory and call show() on them.
showArray(int[]) - Static method in class org.kepler.dataproxy.datasource.opendap.TokenMapper
 
showChannels - Variable in class org.kepler.data.datasource.dataturbine.DataTurbineWriter
If true, show an input port for each channel on server.
showClones - Variable in class ptolemy.actor.lib.hoc.MultiInstanceComposite
If true, show the clones.
showDB() - Method in class org.kepler.objectmanager.cache.CacheManager
debug method to show the contents of the table
showDebug - Variable in class org.ecoinformatics.seek.R.RExpression2
If true, then shoe debugging information about script.
showDebug - Variable in class ptolemy.actor.lib.r.RExpression2
If true, then shoe debugging information about script.
showDebug(String) - Method in class ptolemy.domains.sdf.optimize.OptimizingSDFScheduler
Print a debug message.
showDebugPanel() - Method in class org.mlc.swing.layout.UserPrefs
Should we show the debug panel?
showDialog(Frame, MergeActor, MergeEditorDialog) - Static method in class org.kepler.sms.actors.MappingRefinementDialog
Note: Only entities may have ports
showDialog(Frame, Entity, int) - Static method in class org.kepler.sms.gui.CompositePortDialog
Note: Only entities may have ports
showDialog(Frame, Vector) - Static method in class org.kepler.sms.gui.OntoClassSearchDialog
 
showDialog(Frame, Vector) - Static method in class org.kepler.sms.gui.OntoPropSearchDialog
 
showDialog(Container, String) - Method in class ptolemy.gui.PtFileChooser
Show the dialog.
showDiscardWarning(String) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
 
showDocumentation(NamedObj) - Method in class ptolemy.vergil.basic.GetDocumentationAction
Show the documentation for a NamedObj.
ShowDocumentationAction - Class in org.kepler.gui
This action displays Kepler documentation.
ShowDocumentationAction(TreePath, Component) - Constructor for class org.kepler.gui.ShowDocumentationAction
Constructor
ShowDocumentationAction(TableauFrame) - Constructor for class org.kepler.gui.ShowDocumentationAction
 
ShowFolders - Class in org.kepler.gui.component
 
ShowFolders() - Constructor for class org.kepler.gui.component.ShowFolders
Constructor
showFSMTransitionParameter - Variable in class ptolemy.domains.modal.kernel.Transition
True of the the value of the Transition.fsmTransitionParameterName parameter should be returned by Transition.getLabel().
showInBrowser - Variable in class ptolemy.vergil.basic.export.web.WebExportParameters
If true, open a web browser to display the resulting export.
showInBrowser - Variable in class ptolemy.vergil.basic.ExportParameters
If true, open a web browser to display the resulting export.
showMessage(String) - Method in class org.geon.Scp.MyUserInfo
 
showMessage(String) - Method in class org.sdm.spa.Ssh2Exec.MyUserInfo
 
shownameTP - Variable in class org.kepler.actor.ssh.ExecuteCmd
_showname parameter of thirdParty.
showpage() - Method in class ptolemy.plot.EPSGraphics
Issue the PostScript showpage command, then write and flush the output.
showQBApp() - Method in class org.ecoinformatics.seek.querybuilder.QBApp
Bring up the QBApp demo by showing the frame (only applicable if coming up as an application, not an applet);
showRate(Port, boolean) - Static method in class ptolemy.actor.util.DFUtilities
Depending on the given flag, add an invisible, persistent variable named "_showRate" with value true to the given port that indicates to the user interface that rate parameters on the given port should be displayed in the user interface.
showRun(StateChangeEvent, NamedObj) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
 
showSubset() - Method in class org.kepler.gui.SubsetWorkflowOutlineTreeModel
Show only the nodes containing objects that were called with addToSubset().
showSubsetChooserAsDialog() - Method in class org.cipres.kepler.SubsetChooser
 
showTableaux() - Method in class ptolemy.actor.gui.Effigy
Make all tableaux associated with this effigy and any effigies it contains visible by raising or deiconifying them.
showTagManagerFrame() - Static method in class org.kepler.tagging.gui.TagManagerUI
 
showTitleInHTML - Variable in class ptolemy.vergil.basic.export.web.DefaultTitle
If set to true, then the title given by this parameter will be shown in the HTML prior to the image of the model (as well as in the image of the model, if it is visible when the export to web occurs).
showTitleInHTML - Variable in class ptolemy.vergil.basic.export.web.Title
If set to true, then the title given by this parameter will be shown in the HTML prior to the image of the model (as well as in the image of the model, if it is visible when the export to web occurs).
ShowTypes - Class in ptolemy.vergil.actor.lib
This attribute, when inserted into a model causes types to be displayed on all ports at the same level of the hierarchy as this attribute.
ShowTypes(NamedObj, String) - Constructor for class ptolemy.vergil.actor.lib.ShowTypes
Construct an actor with the specified container and name.
showView(TableauFrame, String) - Method in class org.kepler.gui.ViewManager
 
showWarningMessageOnNoReporting() - Method in class org.kepler.workflowscheduler.gui.ScheduleChangeController
If the warning message will be shown if there is no reporting design on the workflow.
SHPFileNamePort - Variable in class org.kepler.gis.display.JumpSHPDisplayer
Description of the Field
SHR - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
shutdown() - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneAdvanced
Do Clean up
shutdown() - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneIntermediate
Do Clean up
shutdown() - Static method in class org.kepler.Kepler
Perform module cleanup.
Shutdown - Class in org.kepler.module.core
A class to perform cleanup for the core module.
Shutdown() - Constructor for class org.kepler.module.core.Shutdown
 
Shutdown - Class in org.kepler.module.ddpcommon
Perform cleanup for the ddp-common module.
Shutdown() - Constructor for class org.kepler.module.ddpcommon.Shutdown
 
Shutdown - Class in org.kepler.module.hadoop
Module deinitializer for hadoop module.
Shutdown() - Constructor for class org.kepler.module.hadoop.Shutdown
 
Shutdown - Class in org.kepler.module.provenance
Perform cleanup for the provenance module.
Shutdown() - Constructor for class org.kepler.module.provenance.Shutdown
 
Shutdown - Class in org.kepler.module.spark
 
Shutdown() - Constructor for class org.kepler.module.spark.Shutdown
 
Shutdown - Class in org.kepler.module.stratosphere
 
Shutdown() - Constructor for class org.kepler.module.stratosphere.Shutdown
 
Shutdown - Class in org.kepler.module.webview
Perform cleanup for the web-view module.
Shutdown() - Constructor for class org.kepler.module.webview.Shutdown
 
Shutdown - Class in org.kepler.module.workflowrunmanager
A class to perform cleanup for the workflow run manager module.
Shutdown() - Constructor for class org.kepler.module.workflowrunmanager.Shutdown
 
shutdown() - Static method in class org.kepler.objectmanager.cache.CacheManager
Shutdown the cache manager.
shutdown() - Static method in class org.kepler.spark.actor.SparkConnection
Stop any contexts that were started.
shutdown() - Method in interface org.kepler.util.ShutdownListener
This method is called when when Kepler is about to exit.
shutdown() - Static method in class org.kepler.util.ShutdownNotifier
Notify listeners that Kepler is about to exit.
shutdown() - Static method in class org.kepler.webview.server.WebViewServer
Called during shutdown.
SHUTDOWN_TIME - Static variable in class ptolemy.actor.Manager
The amount of time to allow for the model to terminate gracefully before shutting it down when the JVM is shut down due to control-C, user logging out, etc.
shutdownCacheServer() - Static method in class org.kepler.util.sql.DatabaseFactory
Shut down the server for the kepler cache database.
shutdownLatch - Static variable in class org.kepler.module.webview.Shutdown
A count down latch to denote when the server(s) have shut down.
ShutdownListener - Interface in org.kepler.util
An interface to be notified when Kepler is about to exit.
shutdownModule() - Method in class org.kepler.module.core.Shutdown
Perform any module-specific cleanup.
shutdownModule() - Method in class org.kepler.module.ddpcommon.Shutdown
Perform any module-specific cleanup.
shutdownModule() - Method in class org.kepler.module.hadoop.Shutdown
Shutdown the Hadoop server if one was started.
shutdownModule() - Method in interface org.kepler.module.ModuleShutdownable
Perform any module-specific cleanup.
shutdownModule() - Method in class org.kepler.module.provenance.Shutdown
Perform any module-specific cleanup.
shutdownModule() - Method in class org.kepler.module.spark.Shutdown
Shutdown the Spark server if one was started.
shutdownModule() - Method in class org.kepler.module.stratosphere.Shutdown
Shutdown the Stratosphere server if one was started.
shutdownModule() - Method in class org.kepler.module.webview.Shutdown
Perform any module-specific cleanup.
shutdownModule() - Method in class org.kepler.module.workflowrunmanager.Shutdown
Perform any module-specific cleanup.
ShutdownNotifier - Class in org.kepler.util
 
ShutdownNotifier() - Constructor for class org.kepler.util.ShutdownNotifier
 
shutdownServer() - Static method in class org.kepler.hadoop.director.HadoopEngine
Shutdown the Hadoop server if one was started.
shutdownServer() - Static method in class org.kepler.spark.director.SparkEngine
 
shutdownServer() - Static method in class org.kepler.stratosphere.director.StratosphereEngine
Shutdown the Stratosphere server if one was started.
shutdownServers() - Static method in class org.kepler.util.sql.HSQL
Stop any running servers.
SIGN - Static variable in interface ptolemy.data.expr.MatrixParserConstants
RegularExpression Id.
signal - Variable in class ptolemy.domains.sdf.lib.vq.PSNR
The input signal.
SignalProcessing - Class in ptolemy.math
This class provides signal processing functions.
SignalProcessing.GaussianSampleGenerator - Class in ptolemy.math
This class generates samples of a Gaussian function with the specified mean and standard deviation.
SignalProcessing.PolynomialSampleGenerator - Class in ptolemy.math
This class generates samples of a polynomial.
SignalProcessing.RaisedCosineSampleGenerator - Class in ptolemy.math
This class generates samples of a raised cosine pulse, or if the excess is zero, a modified sinc function.
SignalProcessing.SawtoothSampleGenerator - Class in ptolemy.math
This class generates samples of a sawtooth wave with the specified period and phase.
SignalProcessing.SincSampleGenerator - Class in ptolemy.math
This class generates samples of a sinc wave with the specified first zero crossing.
SignalProcessing.SinusoidSampleGenerator - Class in ptolemy.math
This class generates samples of a sinusoidal wave.
SignalProcessing.SqrtRaisedCosineSampleGenerator - Class in ptolemy.math
This class generates samples of a square-root raised cosine pulse.
SIGNED_INTEGER_GROUP - Static variable in class ptolemy.math.Precision.PrecisionFormat
Regular expression for a grouped signed integer (positive or negative).
SimpleALU - Class in ptolemy.actor.lib.tutorial
A simple integer arithmetic logic unit.
SimpleALU(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.tutorial.SimpleALU
Construct an actor in the specified container with the specified name.
SimpleAuth - Class in org.kepler.webview.server.auth
Simple AuthProvider implementation that reads passwords from configuration.xml.
SimpleAuth() - Constructor for class org.kepler.webview.server.auth.SimpleAuth
 
SimpleCharStream - Class in ptolemy.data.expr
An implementation of interface CharStream, where the stream is assumed to contain only ASCII characters (without unicode processing).
SimpleCharStream(Reader, int, int, int) - Constructor for class ptolemy.data.expr.SimpleCharStream
Constructor.
SimpleCharStream(Reader, int, int) - Constructor for class ptolemy.data.expr.SimpleCharStream
Constructor.
SimpleCharStream(Reader) - Constructor for class ptolemy.data.expr.SimpleCharStream
Constructor.
SimpleCharStream(InputStream, String, int, int, int) - Constructor for class ptolemy.data.expr.SimpleCharStream
Constructor.
SimpleCharStream(InputStream, int, int, int) - Constructor for class ptolemy.data.expr.SimpleCharStream
Constructor.
SimpleCharStream(InputStream, String, int, int) - Constructor for class ptolemy.data.expr.SimpleCharStream
Constructor.
SimpleCharStream(InputStream, int, int) - Constructor for class ptolemy.data.expr.SimpleCharStream
Constructor.
SimpleCharStream(InputStream, String) - Constructor for class ptolemy.data.expr.SimpleCharStream
Constructor.
SimpleCharStream(InputStream) - Constructor for class ptolemy.data.expr.SimpleCharStream
Constructor.
SimpleCharStream - Class in ptolemy.moml.unit
An implementation of interface CharStream, where the stream is assumed to contain only ASCII characters (without unicode processing).
SimpleCharStream(Reader, int, int, int) - Constructor for class ptolemy.moml.unit.SimpleCharStream
Constructor.
SimpleCharStream(Reader, int, int) - Constructor for class ptolemy.moml.unit.SimpleCharStream
Constructor.
SimpleCharStream(Reader) - Constructor for class ptolemy.moml.unit.SimpleCharStream
Constructor.
SimpleCharStream(InputStream, String, int, int, int) - Constructor for class ptolemy.moml.unit.SimpleCharStream
Constructor.
SimpleCharStream(InputStream, int, int, int) - Constructor for class ptolemy.moml.unit.SimpleCharStream
Constructor.
SimpleCharStream(InputStream, String, int, int) - Constructor for class ptolemy.moml.unit.SimpleCharStream
Constructor.
SimpleCharStream(InputStream, int, int) - Constructor for class ptolemy.moml.unit.SimpleCharStream
Constructor.
SimpleCharStream(InputStream, String) - Constructor for class ptolemy.moml.unit.SimpleCharStream
Constructor.
SimpleCharStream(InputStream) - Constructor for class ptolemy.moml.unit.SimpleCharStream
Constructor.
SimpleClassLoadingStrategy - Class in org.ptolemy.classloading
As the name says... a simple strategy implementation providing a bridge between the ClassLoadingStrategy approach and the usage of a plain ClassLoader, for loading Java classes.
SimpleClassLoadingStrategy() - Constructor for class org.ptolemy.classloading.SimpleClassLoadingStrategy
Construct a strategy that uses the default class loader, i.e. the one with which this own class was loaded.
SimpleClassLoadingStrategy(ClassLoader) - Constructor for class org.ptolemy.classloading.SimpleClassLoadingStrategy
Construct a strategy that uses the given class loader.
SimpleComputeMergeAlgorithm - Class in org.kepler.sms.actors
SIMPLE MERGE ALGORITHM: ComputeMerge() 1.
SimpleComputeMergeAlgorithm(MergeActor) - Constructor for class org.kepler.sms.actors.SimpleComputeMergeAlgorithm
 
SimpleDelay - Class in ptolemy.domains.de.lib.test
Deprecated.
Use ptolemy.actor.lib.TimeDelay.
SimpleDelay(TypedCompositeActor, String) - Constructor for class ptolemy.domains.de.lib.test.SimpleDelay
Deprecated.
 
SimpleErrorHandler - Class in ptolemy.moml
Simple error handler for the MoMLParser class.
SimpleErrorHandler() - Constructor for class ptolemy.moml.SimpleErrorHandler
Create an error handler that throws an exception.
SimpleFileReader - Class in org.resurgence.actor
This actor reads a file and outputs its contents as a single string.
SimpleFileReader(CompositeEntity, String) - Constructor for class org.resurgence.actor.SimpleFileReader
 
SimpleFiringRecording<T> - Class in org.kepler.provenance
Base class for Recordings with simple firing semantics.
SimpleFiringRecording() - Constructor for class org.kepler.provenance.SimpleFiringRecording
 
SimpleLibrarySearcher - Class in org.kepler.gui
class to search the library.
SimpleLibrarySearcher(JTree, LibrarySearchPane) - Constructor for class org.kepler.gui.SimpleLibrarySearcher
constructor
SimpleMergeConversion - Class in org.kepler.sms.actors
NOTE: This should eventually be more generic, i.e., specify a conversion across multiple ports involed in a mapping.
SimpleMergeConversion(NamedObj, String) - Constructor for class org.kepler.sms.actors.SimpleMergeConversion
Constructor
SimpleMergeMapping - Class in org.kepler.sms.actors
This is an attribute that gets attached to a configured merge actor instance.
SimpleMergeMapping(String, String, String) - Constructor for class org.kepler.sms.actors.SimpleMergeMapping
Constructor
SimpleMergeMapping(NamedObj, String) - Constructor for class org.kepler.sms.actors.SimpleMergeMapping
Constructor
SimpleMergeMapping(NamedObj, String, String, String, String) - Constructor for class org.kepler.sms.actors.SimpleMergeMapping
Constructor
SimpleMergeMapping(NamedObj, String, String, String, String, String) - Constructor for class org.kepler.sms.actors.SimpleMergeMapping
Constructor
SimpleMergeSourceActor - Class in org.kepler.sms.actors
 
SimpleMergeSourceActor(NamedObj, String) - Constructor for class org.kepler.sms.actors.SimpleMergeSourceActor
Constructor
SimpleMergeSourceActorPort - Class in org.kepler.sms.actors
 
SimpleMergeSourceActorPort(NamedObj, String) - Constructor for class org.kepler.sms.actors.SimpleMergeSourceActorPort
Constructor
SimpleMergeTargetPort - Class in org.kepler.sms.actors
 
SimpleMergeTargetPort(NamedObj, String) - Constructor for class org.kepler.sms.actors.SimpleMergeTargetPort
Constructor
SimpleMessageHandler - Class in ptolemy.util
This is a message handler that reports errors in a graphical dialog box.
SimpleMessageHandler() - Constructor for class ptolemy.util.SimpleMessageHandler
 
SimpleNode - Class in ptolemy.data.expr
 
SimpleNode(int) - Constructor for class ptolemy.data.expr.SimpleNode
 
SimpleNode(MatrixParser, int) - Constructor for class ptolemy.data.expr.SimpleNode
 
simplePrintList(List<ConfigurationProperty>) - Static method in class org.kepler.configuration.ConfigurationProperty
 
SimpleSearchUIPane - Class in org.kepler.gui
Class to build the search gui pane that allows the user to enter a single search term to search by.
SimpleSearchUIPane(ActionListener) - Constructor for class org.kepler.gui.SimpleSearchUIPane
constructor
SimpleTableau - Class in ptolemy.actor.gui.test
A simple tableau.
SimpleTableau(PtolemyEffigy, String) - Constructor for class ptolemy.actor.gui.test.SimpleTableau
Create a new run control panel for the model with the given effigy.
SimpleTableau.Factory - Class in ptolemy.actor.gui.test
A factory that creates run control panel tableaux for Ptolemy models.
SimpleTableau.TopFactory - Class in ptolemy.actor.gui.test
A factory that creates run control panel tableaux for the model associated with a top-level effigy (one that has a file representation).
sin() - Method in class ptolemy.math.Complex
Return a new complex number with value equal to the sine of this complex number.
sin(Complex) - Static method in class ptolemy.math.Complex
Return a new complex number with value equal to the sine of the given complex number.
sinc(double) - Static method in class ptolemy.math.SignalProcessing
Return sin(x)/x, the so-called sinc function.
since - Variable in class ptolemy.vergil.basic.DocAttribute
The since field.
SincSampleGenerator() - Constructor for class ptolemy.math.SignalProcessing.SincSampleGenerator
 
Sines - Class in ptolemy.media.javasound.demo.Sines
A simple application that demonstrates the use of SoundPlayback.
Sines() - Constructor for class ptolemy.media.javasound.demo.Sines.Sines
 
SINGLE_LINE_COMMENT - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
SINGLE_PRECISION_SIGNIFICAND_ONLY - Static variable in class ptolemy.math.ExtendedMath
The constant value of a double representation that has all bits as 1 except the sign bit, where only the significand contributes to the value.
SINGLE_PRECISION_SMALLEST_NORMALIZED_POSITIVE_DOUBLE - Static variable in class ptolemy.math.ExtendedMath
The smallest, normalized, positive double value with a single precision.
SingleEvent - Class in ptolemy.actor.lib
This actor produces an event with the specified value at the specified time.
SingleEvent(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.SingleEvent
Construct an actor with the specified container and name.
SingleInputPatternActor - Class in org.kepler.ddp.actor.pattern
A DDP pattern composite actor with a single input.
SingleInputPatternActor(Workspace) - Constructor for class org.kepler.ddp.actor.pattern.SingleInputPatternActor
Construct a new SingleInputPatternActor for a workspace.
SingleInputPatternActor(CompositeEntity, String) - Constructor for class org.kepler.ddp.actor.pattern.SingleInputPatternActor
Construct a new SingleInputPatternActor in a container with a given name.
SingleLineCommentMode - Static variable in interface ptolemy.data.expr.PtParserConstants
Lexical state.
SingleSourceLongestPathAnalysis - Class in ptolemy.graph.analysis
An analysis to find the longest path from a single source to all the other nodes in a directed graph.
SingleSourceLongestPathAnalysis(Graph, Node, ToDoubleMapping) - Constructor for class ptolemy.graph.analysis.SingleSourceLongestPathAnalysis
Construct an instance of this class with a default analyzer.
SingleSourceLongestPathAnalysis(SingleSourceLongestPathAnalyzer) - Constructor for class ptolemy.graph.analysis.SingleSourceLongestPathAnalysis
Construct an instance of this class with a given analyzer.
SingleSourceLongestPathAnalyzer - Interface in ptolemy.graph.analysis.analyzer
A common interface for all the single source longest path analyzers.
SINGLETOKEN - Static variable in class ptolemy.actor.IOPortEvent
A single token related event in getVectorLength().
SingleTokenCommutator - Class in ptolemy.actor.lib
The SingleTokenCommutator has a multiport input port and an output port.
SingleTokenCommutator(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.SingleTokenCommutator
Construct an actor in the specified container with the specified name.
Singleton - Interface in ptolemy.kernel.util
This interface is used to indicate that an attribute is a singleton, meaning that when setContainer() is called, if there is a previous instance of the attribute, then that previous instance is removed.
SingletonAttribute - Class in ptolemy.kernel.util
This class is an attribute that replaces any previously existing attribute in the container that has the same name.
SingletonAttribute() - Constructor for class ptolemy.kernel.util.SingletonAttribute
Construct a new attribute with no container and an empty string as its name.
SingletonAttribute(Workspace) - Constructor for class ptolemy.kernel.util.SingletonAttribute
Construct a new attribute with no container and an empty string as a name.
SingletonAttribute(NamedObj, String) - Constructor for class ptolemy.kernel.util.SingletonAttribute
Construct an attribute with the given container and name.
SingletonConfigurableAttribute - Class in ptolemy.kernel.util
This class is a configurable attribute that replaces any previously existing attribute in the container that has the same name.
SingletonConfigurableAttribute() - Constructor for class ptolemy.kernel.util.SingletonConfigurableAttribute
Construct a new attribute with no container and an empty string as its name.
SingletonConfigurableAttribute(Workspace) - Constructor for class ptolemy.kernel.util.SingletonConfigurableAttribute
Construct a new attribute with no container and an empty string as a name.
SingletonConfigurableAttribute(NamedObj, String) - Constructor for class ptolemy.kernel.util.SingletonConfigurableAttribute
Construct an attribute with the given container and name.
SingletonParameter - Class in ptolemy.data.expr
This subclass of Parameter is identical to Parameter except that it is a singleton, meaning that when its container is set, if the container already contains an attribute with the same name, then that attribute is first removed.
SingletonParameter(NamedObj, String) - Constructor for class ptolemy.data.expr.SingletonParameter
Construct a parameter with the given name contained by the specified entity.
SingletonParameter(NamedObj, String, Token) - Constructor for class ptolemy.data.expr.SingletonParameter
Construct a Parameter with the given container, name, and Token.
SingleViewPane - Class in org.kepler.gui
A ViewPane consisting of 4 ViewPaneLocations.
SingleViewPane() - Constructor for class org.kepler.gui.SingleViewPane
Constructor.
SingleViewPane.Factory - Class in org.kepler.gui
A factory that creates the library panel for the editors.
sinh() - Method in class ptolemy.math.Complex
Return a new complex number with value equal to the hyperbolic sine of this complex number.
sinh(Complex) - Static method in class ptolemy.math.Complex
Return a new complex number with value equal to the hyperbolic sine of this complex number.
sinh(double) - Static method in class ptolemy.math.ExtendedMath
Return the hyperbolic sine of the argument.
Sink - Class in ptolemy.actor.lib
Base class for simple data sinks.
Sink(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Sink
Construct an actor with an input multiport.
sink() - Method in class ptolemy.graph.Edge
Return the sink node of the edge.
SINKMODE_MONITOR - Static variable in class org.kepler.data.datasource.dataturbine.DataTurbine
 
SINKMODE_REQUEST - Static variable in class org.kepler.data.datasource.dataturbine.DataTurbine
 
SINKMODE_SUBSCRIBE - Static variable in class org.kepler.data.datasource.dataturbine.DataTurbine
 
sinkModeInputParam - Variable in class org.kepler.data.datasource.dataturbine.DataTurbine
Sink mode.
SinkNodeAnalysis - Class in ptolemy.graph.analysis
Computation of sink nodes in a graph.
SinkNodeAnalysis(Graph) - Constructor for class ptolemy.graph.analysis.SinkNodeAnalysis
Construct an instance of this class for a given graph.
SinkNodeAnalysis(SinkNodeAnalyzer) - Constructor for class ptolemy.graph.analysis.SinkNodeAnalysis
Construct an instance of this class using a given analyzer.
SinkNodeAnalyzer - Interface in ptolemy.graph.analysis.analyzer
Base interface for the computation of sink nodes in a graph.
sinkNodeCount() - Method in class ptolemy.graph.DirectedGraph
Return the number of sink nodes in this graph.
sinkNodes() - Method in class ptolemy.graph.DirectedGraph
Return all the sink nodes in this graph in the form of a collection.
SinkNodeStrategy - Class in ptolemy.graph.analysis.strategy
Computation of sink nodes in a graph.
SinkNodeStrategy(Graph) - Constructor for class ptolemy.graph.analysis.strategy.SinkNodeStrategy
Construct a sink node analysis for a given graph.
sinkPortList() - Method in class ptolemy.actor.IOPort
Return a list of the ports that may accept data from this port when it sends on the outside.
SinusoidSampleGenerator(double, double) - Constructor for class ptolemy.math.SignalProcessing.SinusoidSampleGenerator
Construct a SinusoidSampleGenerator.
SiteCollection - Class in org.sdm.spa.actors.piw.viz
 
SiteCollection(SequenceCollection) - Constructor for class org.sdm.spa.actors.piw.viz.SiteCollection
 
sitesFile - Variable in class org.ROADnet.OrbLogger
 
SitesPanel - Class in org.sdm.spa.actors.piw.viz
 
SitesPanel(SequenceCollection, SiteCollection, ActionListener) - Constructor for class org.sdm.spa.actors.piw.viz.SitesPanel
 
Size - Interface in com.jgoodies.forms.layout
An interface that describes sizes as used by the FormLayout: component measuring sizes, constant sizes with value and unit, and bounded sizes that provide lower and upper bounds for a size.
size() - Method in class org.sdm.spa.actors.piw.viz.SequenceCollection
 
size() - Method in class org.sdm.spa.actors.piw.viz.SiteCollection
 
size - Variable in class ptolemy.actor.gui.Tableau
A specification for the size of the frame.
size() - Method in class ptolemy.actor.QueueReceiver
Return the number of tokens in the receiver.
size() - Method in class ptolemy.actor.sched.Schedule
Return the number of elements in this list.
size() - Method in class ptolemy.actor.util.CalendarQueue
Return the queue size, which is the number of entries currently in the queue.
size() - Method in class ptolemy.actor.util.FIFOQueue
Return the number of objects in the queue.
size() - Method in class ptolemy.actor.util.TotallyOrderedSet
Return the size of the set.
size() - Method in class ptolemy.domains.de.kernel.DECQEventQueue
Return the size of the event queue.
size() - Method in interface ptolemy.domains.de.kernel.DEEventQueue
Return the size of the event queue.
size - Variable in class ptolemy.domains.de.lib.Queue
The current size of the queue.
size - Variable in class ptolemy.domains.de.lib.Server
The current size of the queue.
size() - Method in class ptolemy.domains.sdf.kernel.ArrayFIFOQueue
Return the number of objects in the queue.
size() - Method in class ptolemy.domains.sdf.kernel.SDFReceiver
Return the number of tokens in the receiver.
size() - Method in class ptolemy.graph.LabeledList
Return the number of elements in this list.
size() - Method in class ptolemy.graph.sched.Schedule
Return the number of elements in this list.
size() - Method in class ptolemy.kernel.util.CrossRefList
Return size of this list.
size() - Method in class ptolemy.kernel.util.NamedList
Return the number of elements in the list.
size - Variable in class ptolemy.media.Audio
Number of bytes of audio data.
size(Object) - Method in class ptolemy.util.MultiHashMap
Return the size of the collection mapped to the specified key.
SizeAttribute - Class in ptolemy.actor.gui
This attribute stores the width and height of a graphical component.
SizeAttribute(NamedObj, String) - Constructor for class ptolemy.actor.gui.SizeAttribute
Construct an attribute with the given name contained by the specified entity.
SIZED_FIX - Static variable in class ptolemy.data.type.BaseType
The fix data type, with a precision specified.
Sizes - Class in com.jgoodies.forms.layout
Consists only of static methods that create and convert sizes as required by the FormLayout.
SketchApplet - Class in ptolemy.domains.sdf.demo.Sketch
This applet demonstrates the use of the SketchSource actor, and in particular, how to share the same plot display between an instance of SketchedSource and an instance of SequencePlotter.
SketchApplet() - Constructor for class ptolemy.domains.sdf.demo.Sketch.SketchApplet
 
SketchedSource - Class in ptolemy.actor.lib.gui
This actor is a plotter that also produces as its output a signal that has been sketched by the user on the screen.
SketchedSource(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.gui.SketchedSource
Construct an actor with the given container and name.
skipPast(String) - Method in class org.json.XMLTokener
Skip characters until past the requested string.
skippedEntity(String) - Method in class org.kepler.reporting.rio.fop.tools.EasyGenerationContentHandlerProxy
 
skipTo(char) - Method in class org.json.JSONTokener
Skip characters until the next character is the requested character.
SLASH - Static variable in class org.json.XML
The Character '/'.
SLASHCONNECTOR - Static variable in class org.kepler.workflowscheduler.gui.SchedulerAbstractAction
 
Sleep - Class in ptolemy.actor.lib
On each firing, read at most one token from each input channel, sleep by the specified amount of real time, and then produce the same input tokens on the respective output channels.
Sleep(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Sleep
Construct an actor with the given container and name.
SleepFireTwice - Class in ptolemy.actor.lib.test
Call Sleep.fire() twice so as to illustrate a bug.
SleepFireTwice(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.test.SleepFireTwice
Construct an actor with the given container and name.
sleepTime - Variable in class org.resurgence.actor.StatusChecker
The sleep time amount, in milliseconds, between two checks.
sleepTime - Variable in class ptolemy.actor.lib.Sleep
The sleep time in milliseconds.
sleepTime - Variable in class ptolemy.actor.lib.VariableSleep
An input port receives the value of sleep time.
sleepWhileWaiting - Variable in class org.kepler.actor.job.GenericJobLauncher
Amount of time (in seconds) to sleep between checking job status.
sleepWhileWaiting - Variable in class org.kepler.actor.job.GenericJobReconnect
Amount of time (in seconds) to sleep between checking job status.
sleepWhileWaiting - Variable in class org.kepler.actor.job.JobStatus
Amount of time (in milliseconds) to sleep between checking job status.
Slicer - Class in ptolemy.actor.lib.comm
The Slicer functions as a decoder of the LineCoder.
Slicer(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.comm.Slicer
Construct an actor with the given container and name.
slider - Variable in class ptolemy.actor.lib.gui.SliderSource
The slider that controls the output of this actor.
SliderFrame(int, int, int, int, String) - Constructor for class ptolemy.actor.lib.gui.SliderSource.SliderFrame
Create a frame for the slider.
SliderListener(Query, String) - Constructor for class ptolemy.gui.Query.SliderListener
Construct a listener for changes in a slider.
SliderSource - Class in ptolemy.actor.lib.gui
The output of this actor is controlled by a slider in the run window.
SliderSource(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.gui.SliderSource
Construct an actor with an input multiport of type GENERAL.
SliderSource.SliderFrame - Class in ptolemy.actor.lib.gui
The frame for the slider.
slope - Variable in class org.kepler.gis.actor.landscape.CreateLandscape
Slope raster (required).
SmartSender - Class in ptolemy.domains.de.demo.SmartSender
This actor adaptively establishes connections by searching for an unused input port in the model and connecting to it.
SmartSender(CompositeEntity, String) - Constructor for class ptolemy.domains.de.demo.SmartSender.SmartSender
Create a new actor in the specified container with the specified name.
SMBRACE - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
SMDOLLAR - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
SMDOLLARBRACE - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
SMDOLLARPAREN - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
SMID - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
SMIDBRACE - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
SMIDPAREN - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
SMLETTER - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
SmoothToDouble - Class in ptolemy.actor.lib.conversions
Convert a SmoothToken (one that has a double value and an array of derivatives) to a DoubleToken, discarding the derivative information.
SmoothToDouble(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.conversions.SmoothToDouble
Construct an actor with the given container and name.
SmoothToken - Class in ptolemy.data
A double-valued token that contains zero or more derivatives, representing the value of a function of time at a particular time.
SmoothToken() - Constructor for class ptolemy.data.SmoothToken
Construct a SmoothToken with value 0.0 at time zero and no derivatives.
SmoothToken(double) - Constructor for class ptolemy.data.SmoothToken
Construct a SmoothToken with the specified value at time zero and no derivatives.
SmoothToken(double, double[]) - Constructor for class ptolemy.data.SmoothToken
Construct a SmoothToken with the specified value at time zero and the specified derivatives.
SmoothToken(double, Time, double[]) - Constructor for class ptolemy.data.SmoothToken
Construct a SmoothToken with the specified value at the specified time, and with the specified derivatives.
SmoothToken(double[], Time) - Constructor for class ptolemy.data.SmoothToken
Construct a SmoothToken with the specified value and derivatives, given as a single array, at the specified time.
SmoothToken(String) - Constructor for class ptolemy.data.SmoothToken
Construct a SmoothToken from the specified string, which specifies only a value.
smoothToken(double) - Static method in class ptolemy.data.SmoothToken
Return a SmoothToken with the specified value at time zero and no derivatives.
smoothToken(double, double[]) - Static method in class ptolemy.data.SmoothToken
Return a SmoothToken with the specified value at time zero and derivatives.
SMPAREN - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
SMSServices - Class in org.kepler.sms
This class provides a set of operations, or services for interacting with the Semantic Mediation System.
SMSServices() - Constructor for class org.kepler.sms.SMSServices
 
SMSTagChangeListener - Interface in org.kepler.sms
Created by IntelliJ IDEA.
SMSTRING - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
SMSUtil - Class in org.kepler.sms.util
A Utility class for accessing common sms functions through static methods.
SMSUtil() - Constructor for class org.kepler.sms.util.SMSUtil
 
SnapConstraint - Class in ptolemy.vergil.toolbox
This constraint ensures that a point is a multiple of a constant that defaults to 5.0.
SnapConstraint() - Constructor for class ptolemy.vergil.toolbox.SnapConstraint
Construct a new instance of a snap constraint.
snapped() - Method in class ptolemy.vergil.toolbox.SnapConstraint
Return true to indicate that this does snap to grid.
SoaplabAnalysis - Class in org.sdm.spa
The following actor is for exectuing the standard soaplab operations after creating soaplab clients and setting input operations in the former stages of the workflow.
SoaplabAnalysis(CompositeEntity, String) - Constructor for class org.sdm.spa.SoaplabAnalysis
Construct a SoaplabAnalysis actor with given container and name.
SoaplabChooseOperation - Class in org.sdm.spa
The following actor is for choosing set_<name> operations for executing any derived web service registered at EBI.
SoaplabChooseOperation(CompositeEntity, String) - Constructor for class org.sdm.spa.SoaplabChooseOperation
Construct a SoaplabChooseOperation actor with given container and name.
SoaplabChooseResultType - Class in org.sdm.spa
The following actor is for choosing get_<name> operations for displaying web service execution results as desired.
SoaplabChooseResultType(CompositeEntity, String) - Constructor for class org.sdm.spa.SoaplabChooseResultType
Construct a SoaplabChooseResultType actor with given container and name.
soaplabEditMethod - Variable in class org.sdm.spa.SoaplabAnalysis
Enter your own Soaplab Method.
soaplabMethod - Variable in class org.sdm.spa.SoaplabAnalysis
The standard method choices for SoaplabServices
SoaplabServiceClient - Class in org.sdm.spa
The following client is used by other web service soaplab related actors while executing the web service as well as transmitting the above client through various actors in the workflow.
SoaplabServiceClient(String) - Constructor for class org.sdm.spa.SoaplabServiceClient
Construct a SoaplabServiceClient with given wsdl.
SoaplabServiceStarter - Class in org.sdm.spa
The following actor is for creating the soaplab client as well as setting the client's set_<name> operations with appropriate values.The output is the soaplab service client itself, forwarded to other others such as SoaplabAnalysis
SoaplabServiceStarter(CompositeEntity, String) - Constructor for class org.sdm.spa.SoaplabServiceStarter
Construct a SoaplabServiceStarter actor with given container and name.
SoftClip - Class in ptolemy.media.javasound.demo.SoftClip
A simple application that demonstrates the use of LiveSound by performing soft clipping in real-time.
SoftClip() - Constructor for class ptolemy.media.javasound.demo.SoftClip.SoftClip
 
softDecoding - Variable in class ptolemy.actor.lib.comm.ViterbiDecoder
Boolean defining the decoding mode.
Solution - Class in ptolemy.moml.unit
An instance of this class contains a "solution" of Unit constraints.
Solution(TypedCompositeActor, String[], Vector) - Constructor for class ptolemy.moml.unit.Solution
Construct a Solution from a set of variables, and a set of constraints.
SolutionListModel() - Constructor for class ptolemy.vergil.unit.UnitSolverDialog.SolutionListModel
 
solveGreatest() - Method in class ptolemy.graph.InequalitySolver
Solve the set of inequalities for the greatest solution.
solveLeast() - Method in class ptolemy.graph.InequalitySolver
Solve the set of inequalities for the least solution.
sort() - Method in class org.kepler.modulemanager.gui.SuitesList
 
sort(ArrayToken) - Static method in class ptolemy.data.expr.UtilityFunctions
Return a new array that is the sorted contents of a specified array, in ascending order.
SortableResultRecord - Class in org.ecoinformatics.seek.ecogrid.quicksearch
This object is one record in resultset from metacat ecogrid.
SortableResultRecord(String, String, Vector) - Constructor for class org.ecoinformatics.seek.ecogrid.quicksearch.SortableResultRecord
Default construct
SortableResultRecordComparator - Class in org.ecoinformatics.seek.ecogrid.quicksearch
Class to compare two ResultRecord.
SortableResultRecordComparator() - Constructor for class org.ecoinformatics.seek.ecogrid.quicksearch.SortableResultRecordComparator
Default constructor
sortAscending(ArrayToken) - Static method in class ptolemy.data.expr.UtilityFunctions
Return a new array that is the sorted contents of a specified array, in ascending order.
sortAscendingReturnType(Type) - Static method in class ptolemy.data.expr.UtilityFunctions
Return the (exact) return type of the sortAscending function above.
SortByCommandTime() - Constructor for class ptolemy.actor.lib.gem5.Gem5Wrapper.SortByCommandTime
 
sortContainedObjects(Collection) - Method in class ptolemy.kernel.util.NamedObj
Return an ordered list of contained objects filtered by the specified filter.
sortDescending(ArrayToken) - Static method in class ptolemy.data.expr.UtilityFunctions
Return a new array that is the sorted contents of a specified array, in descending order.
sortDescendingReturnType(Type) - Static method in class ptolemy.data.expr.UtilityFunctions
Return the (exact) return type of the sortDescending function above.
sortedKeys() - Method in class org.json.JSONObject
Get an enumeration of the keys of the JSONObject.
sortReturnType(Type) - Static method in class ptolemy.data.expr.UtilityFunctions
Return the (exact) return type of the sort function above.
SoundCapture - Class in ptolemy.media.javasound
A buffer supporting the capturing of audio samples from a file or from the computer's audio input port.
SoundCapture(float, int, int, int, int) - Constructor for class ptolemy.media.javasound.SoundCapture
Construct a sound capture object that captures audio from a computer's audio input port.
SoundCapture(String, int) - Constructor for class ptolemy.media.javasound.SoundCapture
Construct a sound capture object that captures audio from a sound file specified as a URL.
SoundPlayback - Class in ptolemy.media.javasound
A buffer supporting the playback of audio data and the the writing of audio data to a sound file.
SoundPlayback(float, int, int, int, int) - Constructor for class ptolemy.media.javasound.SoundPlayback
Construct a sound playback object that plays audio through the computer's speaker.
SoundPlayback(String, float, int, int, int, int) - Constructor for class ptolemy.media.javasound.SoundPlayback
Construct a sound playback object that writes audio to a sound file with the specified name.
SoundReader - Class in ptolemy.media.javasound
This class is a buffer that supports the reading of audio samples from a sound file that is specified as a URL.
SoundReader(String, int) - Constructor for class ptolemy.media.javasound.SoundReader
Construct a sound reader object that reads audio samples from a sound file specified as a string describing a URL and open the file at the specified URL.
SoundReader(URL, int) - Constructor for class ptolemy.media.javasound.SoundReader
Construct a sound reader object that reads audio samples from a sound file specified as a URL and open the file at the specified URL.
SoundWriter - Class in ptolemy.media.javasound
This class is a buffer that supports the writing of audio samples to a sound file.
SoundWriter(String, float, int, int, int) - Constructor for class ptolemy.media.javasound.SoundWriter
Construct a sound writer object with the specified name.
SOURCE - Static variable in class org.ecoinformatics.seek.dataquery.DBTablesGenerator
 
source - Variable in class org.kepler.actor.ssh.FileCopier
Source in user@host:path format.
source - Static variable in class org.kepler.workflowscheduler.gui.SchedulerAbstractAction
 
source - Variable in class org.sdm.spa.actors.transport.GenericFileCopier
source machine information in user@host:port format.
source - Variable in class org.srb.DataGridTransfer
Paths to the files to fetch
source - Variable in class ptolemy.actor.IntermediateReceiver
The source actor that sent a token to this receiver.
Source - Class in ptolemy.actor.lib
Base for simple data sources.
Source(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Source
Construct an actor with the given container and name.
source() - Method in class ptolemy.graph.Edge
Return the source node of the edge.
source - Variable in class ptolemy.vergil.kernel.attributes.ImageAttribute
The source image file.
source - Variable in class ptolemy.vergil.pdfrenderer.PDFAttribute
The source image file.
SOURCE_BUTTON_CAPTION - Static variable in class org.kepler.gui.SearchUIJPanel
 
sourceDataPort - Variable in class org.ecoinformatics.seek.ecogrid.EcogridWriter
Can be used in lieu of supplying a file name to dataFileNamePort.
sourceFile - Variable in class org.geon.FileCopy
Source file.
sourceFile - Variable in class org.sdm.spa.actors.transport.GenericFileCopier
source file/directory to be copied.
sourceFileNamePort - Variable in class org.ecoinformatics.seek.ecogrid.EcogridWriter
Accepts the file name and path of the local data file to upload to the EcoGrid service.
sourceFileParam - Variable in class org.geon.FileCopy
Source file name or URL.
sourceHDFSPath - Variable in class org.kepler.hadoop.actor.HDFSUnLoader
The local file path to which to read.
sourceLabel - Variable in class org.eol.WmsdActor
 
sourceLocalPaths - Variable in class org.kepler.hadoop.actor.HDFSLoader
The local file path to which to read.
SourceMatrix - Class in ptolemy.domains.pn.demo.QR
This class defines a large matrix containing 500 real measured data from an array of 16 antenna's.
SourceMatrix() - Constructor for class ptolemy.domains.pn.demo.QR.SourceMatrix
 
SourceNodeAnalysis - Class in ptolemy.graph.analysis
Computation of source nodes in a graph.
SourceNodeAnalysis(Graph) - Constructor for class ptolemy.graph.analysis.SourceNodeAnalysis
Construct an instance of this class for a given graph.
SourceNodeAnalysis(SourceNodeAnalyzer) - Constructor for class ptolemy.graph.analysis.SourceNodeAnalysis
Construct an instance of this class using a given analyzer.
SourceNodeAnalyzer - Interface in ptolemy.graph.analysis.analyzer
Base interface for the computation of source nodes in a graph.
sourceNodeCount() - Method in class ptolemy.graph.DirectedGraph
Return the number of source nodes in this graph.
sourceNodes() - Method in class ptolemy.graph.DirectedGraph
Return all the source nodes in this graph in the form of a collection.
SourceNodeStrategy - Class in ptolemy.graph.analysis.strategy
Computation of source nodes in a graph.
SourceNodeStrategy(Graph) - Constructor for class ptolemy.graph.analysis.strategy.SourceNodeStrategy
Construct an instance of this strategy for a given graph.
sourcePortList() - Method in class ptolemy.actor.IOPort
Return a list of ports that may send data to this port from the outside.
sourcePosition - Variable in class ptolemy.actor.lib.ArrayExtract
The index into the input array at which to start copying.
sourceRepositoryName - Static variable in class org.kepler.workflowscheduler.gui.SchedulerAbstractAction
 
sourceResource(String) - Static method in class ptolemy.util.ClassUtilities
Lookup a URL in the classpath, but search up the classpath for directories named src.
sourceState() - Method in class ptolemy.domains.modal.kernel.Transition
Return the source state of this transition.
sourceURL - Variable in class ptolemy.actor.lib.Reader
Deprecated.
The URL of the file to read from.
sourceURL - Variable in class ptolemy.actor.lib.URLReader
The URL of the file to read from.
SOUTH - Static variable in class org.kepler.reporting.rio.ItemLabel
 
SPACE - Static variable in class org.ecoinformatics.seek.dataquery.DBTablesGenerator
 
SpaceApplication - Class in ptolemy.actor.gui.jnlp
A wrapper class that calls eventually calls ptolemy.vergil.VergilApplication for use with Java Network Launching Protocol (JNLP) aka Web Start to run the Office Space application This class is very similar to other classes that invoke Vergil applications under Web Start because each application needs to have its own jar file.
SpaceApplication() - Constructor for class ptolemy.actor.gui.jnlp.SpaceApplication
 
SPACESTRING - Static variable in interface org.kepler.objectmanager.data.db.Constraint
 
spacing - Variable in class ptolemy.vergil.basic.layout.AbstractLayoutConfiguration
The overall spacing between graph elements.
SPACING - Static variable in class ptolemy.vergil.basic.layout.kieler.Parameters
Layout option for the overall spacing between elements.
spacing - Variable in class ptolemy.vergil.icon.NameIcon
If greater than zero, then use a double box where the outside one is the specified size larger than the inside one.
SPARK_ENGINE_NAME - Static variable in class org.kepler.spark.director.SparkEngine
The name of the spark engine.
SparkBaseActor - Class in org.kepler.spark.actor
A base class for actors using JavaSparkContexts.
SparkBaseActor(CompositeEntity, String) - Constructor for class org.kepler.spark.actor.SparkBaseActor
 
SparkConnection - Class in org.kepler.spark.actor
An attribute that contains connection information to a Spark server.
SparkConnection(NamedObj, String) - Constructor for class org.kepler.spark.actor.SparkConnection
Create a new SparkConnection with the specified name.
SparkEngine - Class in org.kepler.spark.director
An engine than runs workflows in Spark.
SparkEngine(DDPDirector) - Constructor for class org.kepler.spark.director.SparkEngine
 
SparkJob - Class in org.kepler.spark.director
A Spark job that can be cancelled.
SparkJob(JavaSparkContext, DataSink, String) - Constructor for class org.kepler.spark.director.SparkJob
Create a new job.
SparkSQLActor - Class in org.kepler.spark.actor
 
SparkSQLActor(CompositeEntity, String) - Constructor for class org.kepler.spark.actor.SparkSQLActor
 
SparkSQLQuery - Class in org.kepler.spark.mllib
 
SparkSQLQuery(CompositeEntity, String) - Constructor for class org.kepler.spark.mllib.SparkSQLQuery
 
SparkUtilities - Class in org.kepler.spark.util
Utilities for Spark.
SPATIALRASTERENTITY - Static variable in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200Parser
 
SPATIALRASTERENTITY - Static variable in class org.kepler.objectmanager.data.db.Entity
 
SPATIALVECTORENTITY - Static variable in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200Parser
 
SPATIALVECTORENTITY - Static variable in class org.kepler.objectmanager.data.db.Entity
 
spawnSeparateModels - Variable in class ptolemy.actor.lib.hoc.ModelReference
If true, then on each firing, create a new instance of the model given by modelFileOrURL.
specialize(ASTPtRootNode, List, ParserScope) - Method in class ptolemy.data.expr.ParseTreeSpecializer
Return a new parse tree resulting from the specialization of the given parse tree.
specialToken - Variable in class ptolemy.data.expr.Token
This field is used to access special tokens that occur prior to this token, but after the immediately preceding regular (non-special) token.
specialToken - Variable in class ptolemy.moml.unit.Token
This field is used to access special tokens that occur prior to this token, but after the immediately preceding regular (non-special) token.
speciesName - Variable in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreDataSource
 
specificationStart() - Method in class org.kepler.profiling.gui.ExecutionMonitorPanel.ExecutionMonitorRecording
Clear data structures before starting.
specificationStart() - Method in class org.kepler.provenance.Recording
Called before registering workflow contents.
specificationStart() - Method in class org.kepler.provenance.SimpleFiringRecording
Called before registering workflow contents.
specificationStart() - Method in class org.kepler.provenance.sql.SQLRecording
Called before registering workflow contents.
specificationStart() - Method in class org.kepler.provenance.sql.SQLRecordingV7
Called before registering workflow contents.
specificationStart() - Method in class org.kepler.provenance.TextFileRecording
Called before registering workflow contents.
specificationStop() - Method in class org.kepler.provenance.Recording
Called when finished registering workflow contents.
specificationStop() - Method in class org.kepler.provenance.sql.SQLRecordingV7
Called when finished registering workflow contents.
specificationStop() - Method in class org.kepler.provenance.TextFileRecording
Called when finished registering workflow contents.
specificElement - Variable in class org.sdm.spa.DelayStreamToASpecificElement
The string pattern of the specific element to wait for.
specifyLSID(KeplerLSID) - Method in class org.kepler.kar.SaveKAR
Set the LSID to be used for the KAR.
specToURL(String) - Static method in class ptolemy.actor.gui.ConfigurationApplication
Given the name of a file or a URL, convert it to a URL.
speed - Variable in class org.kepler.gis.actor.farsite.GenerateWindFile
The 20ft wind speed in mph.
splash(Image) - Static method in class org.kepler.gui.SplashWindow
Open's a splash window using the specified image.
splash(Image, boolean) - Static method in class org.kepler.gui.SplashWindow
 
splash(URL) - Static method in class org.kepler.gui.SplashWindow
Opens a splash window using the specified image.
splash(URL, boolean) - Static method in class org.kepler.gui.SplashWindow
splash the url. if reset is true, allow the splash to be shown more than once
SplashWindow - Class in org.kepler.gui
A Splash window.
SPLINES - Static variable in class ptolemy.vergil.basic.layout.kieler.Parameters
Layout option that determines whether splines should be used for FSMs.
split(int[], int[]) - Method in class ptolemy.data.BooleanMatrixToken
Split this matrix into multiple matrices.
split(int[], int[]) - Method in class ptolemy.data.ComplexMatrixToken
Split this matrix into multiple matrices.
split(int[], int[]) - Method in class ptolemy.data.DoubleMatrixToken
Split this matrix into multiple matrices.
split(int[], int[]) - Method in class ptolemy.data.FixMatrixToken
Split this matrix into multiple matrices.
split(int[], int[]) - Method in class ptolemy.data.IntMatrixToken
Split this matrix into multiple matrices.
split(int[], int[]) - Method in class ptolemy.data.LongMatrixToken
Split this matrix into multiple matrices.
split(int[], int[]) - Method in class ptolemy.data.MatrixToken
Split this matrix into multiple matrices.
split(String) - Static method in class ptolemy.util.StringUtilities
If the string is longer than 79 characters, split it up by adding newlines in all newline delimited substrings that are longer than 79 characters.
split(String, int) - Static method in class ptolemy.util.StringUtilities
If the string is longer than length characters, split the string up by adding newlines in all newline delimited substrings that are longer than length characters.
SplitBoundingBox - Class in org.kepler.gis.actor
Deprecated.
Use CoverBoundingBox instead.
SplitBoundingBox(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.SplitBoundingBox
Deprecated.
 
splitOutXML(String, Document, List, String) - Method in class org.sdm.spa.XMLHelper
Peel off the root element from an XML document, and output the content in each child element to the output port with same name.
splitTags(String) - Static method in class org.kepler.sms.Util
 
SProxy - Class in org.srb
Executes a proxy command.
SProxy(CompositeEntity, String) - Constructor for class org.srb.SProxy
Construct a constant source with the given container and name.
SPut - Class in org.srb
SPut is a Kepler Actor which has a functionality similar to the SRB command namely "Sput".
SPut(CompositeEntity, String) - Constructor for class org.srb.SPut
Construct a constant source with the given container and name.
sqlConnectionURL - Variable in class org.kepler.spark.mllib.SparkSQLQuery
SQL connection URL
sqlDef - Variable in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource
The SQL command which will be applied to the data entity to filter data values.
sqlDriver - Variable in class org.kepler.spark.mllib.SparkSQLQuery
SQL driver to use
SQLQueryV8 - Class in org.kepler.provenance.sql
Implementation of query interface for SQL v8.
SQLQueryV8(Map<String, String>) - Constructor for class org.kepler.provenance.sql.SQLQueryV8
Construct a new SQLQueryV8 and connect to a database.
SQLQueryV8(DatabaseType) - Constructor for class org.kepler.provenance.sql.SQLQueryV8
Construct a new SQLQueryV8 from a connected DatabaseType.
SQLRecording - Class in org.kepler.provenance.sql
SQL Implementation of Recording using SDM SPA schema.
SQLRecording() - Constructor for class org.kepler.provenance.sql.SQLRecording
Construct a new SQLRecording.
SQLRecording.PortDirection - Enum in org.kepler.provenance.sql
 
SQLRecordingParameters - Class in org.kepler.provenance.sql
Parameters for SQL Recording.
SQLRecordingParameters(NamedObj) - Constructor for class org.kepler.provenance.sql.SQLRecordingParameters
Construct a new SQLRecordParameters.
SQLRecordingParametersV8(NamedObj) - Constructor for class org.kepler.provenance.sql.SQLRecordingV8.SQLRecordingParametersV8
Construct a new SQLRecordParametersV8.
SQLRecordingV7 - Class in org.kepler.provenance.sql
SQL Implementation of Recording using SDM SPA schema.
SQLRecordingV7() - Constructor for class org.kepler.provenance.sql.SQLRecordingV7
 
SQLRecordingV8 - Class in org.kepler.provenance.sql
SQL provenance output.
SQLRecordingV8() - Constructor for class org.kepler.provenance.sql.SQLRecordingV8
 
SQLRecordingV8.SQLRecordingParametersV8 - Class in org.kepler.provenance.sql
A subclass of SQLRecordingParameters that adds more parameters.
SQLRecordingV8.TokenInfo - Class in org.kepler.provenance.sql
The class used in the port queues to contain the port event write id and data md5.
sqlScript - Variable in class org.kepler.actor.database.DatabaseTableCreator
 
sqlScriptParam - Variable in class org.kepler.actor.database.DatabaseTableCreator
A sql script to create the table
sqrt() - Method in class ptolemy.math.Complex
Return a new complex number with its value equal to the the square root of this complex number.
sqrt(Complex) - Static method in class ptolemy.math.Complex
Return a new complex number with its value equal to the the square root of the specified complex number.
SQRT_2 - Static variable in class ptolemy.math.ExtendedMath
sqrt(2).
SqrtRaisedCosineSampleGenerator(double, double) - Constructor for class ptolemy.math.SignalProcessing.SqrtRaisedCosineSampleGenerator
Construct a SqrtRaisedCosineSampleGenerator.
square(double, double, double) - Static method in class ptolemy.math.SignalProcessing
Return a sample of a square wave with the specified period and phase at the specified time.
squeezeArrays(DConstructor) - Static method in class org.kepler.dataproxy.datasource.opendap.OpendapDataSource
Eliminates array dimensions whose dimensions are 1 (and thus in practice don't exist)
squeezeArrays(DConstructor) - Static method in class org.kepler.dataproxy.datasource.opendap.OpendapDataSourceODC
Eliminates array dimensions whose dimensions are 1 (and thus in practice don't exisit)
squelch - Variable in class ptolemy.actor.lib.ArrayPeakSearch
The value below which the input is ignored by the algorithm.
SRBAddMD - Class in org.srb
SRBAddMD is a Kepler Actor which adds user defined metadeta to an SRB dataset or collection.
SRBAddMD(CompositeEntity, String) - Constructor for class org.srb.SRBAddMD
Construct a constant source with the given container and name.
SRBConnect - Class in org.srb
The SRBConnection actor provides users with valid accounts an ability to connect to the SDSC Storage Resoure Broker from within the Kepler computational environment.
SRBConnect(CompositeEntity, String) - Constructor for class org.srb.SRBConnect
Construct an actor with the given container and name.
SRBCreateQueryConditions - Class in org.srb
Creates an array of query conditions from user selections.
SRBCreateQueryConditions(CompositeEntity, String) - Constructor for class org.srb.SRBCreateQueryConditions
Construct a constant source with the given container and name.
SRBCreateQueryInterface - Class in org.srb
Create an html interface for querying the SRB.
SRBCreateQueryInterface(CompositeEntity, String) - Constructor for class org.srb.SRBCreateQueryInterface
Construct a constant source with the given container and name.
srbDefaultResource - Variable in class org.srb.SRBConnect
A SRB resource is a system that is capable of storing data objects and is accessible to the SRB
SRBDisconnect - Class in org.srb
This actor reads an SRB file.
SRBDisconnect(CompositeEntity, String) - Constructor for class org.srb.SRBDisconnect
Construct an actor with the given container and name.
srbFilePath - Variable in class org.srb.SRBAddMD
Path to SRB file.
srbFilePath - Variable in class org.srb.SRBGetMD
Path to SRB file.
srbFilePath - Variable in class org.srb.SRBQueryMD
Collection path to begin querying from
SRBFileSystem - Variable in class org.srb.SGet
SRB file system reference.
SRBFileSystem - Variable in class org.srb.SGetPhysicalLocation
Connection reference
SRBFileSystem - Variable in class org.srb.SProxy
SRB file system reference.
SRBFileSystem - Variable in class org.srb.SPut
SRB file system reference.
SRBFileSystem - Variable in class org.srb.SRBAddMD
pointer to the SRB file system.
SRBFileSystem - Variable in class org.srb.SRBCreateQueryInterface
A pointer to the SRB file system.
SRBFileSystem - Variable in class org.srb.SRBDisconnect
Connection reference
SRBFileSystem - Variable in class org.srb.SRBGetMD
pointer to the SRB file system.
SRBFileSystem - Variable in class org.srb.SRBProxyCommand
pointer to the SRB file system.
SRBFileSystem - Variable in class org.srb.SRBQueryMD
pointer to the SRB file system.
SRBFileSystem - Variable in class org.srb.SRBReader
Connection reference
SRBFileSystem - Variable in class org.srb.SRBWriter
Connection reference
SRBGetMD - Class in org.srb
SRBGetMD is a Kepler Actor which gets user defined metadeta for an SRB dataset or collection.
SRBGetMD(CompositeEntity, String) - Constructor for class org.srb.SRBGetMD
Construct a constant source with the given container and name.
srbHomeCollection - Variable in class org.srb.SRBConnect
Each SRB-registered user is started with a 'home' collection.
srbHost - Variable in class org.srb.SRBConnect
srbHost : represents available srb server hosts
srbMdasDomainHome - Variable in class org.srb.SRBConnect
A domainHome is used to identify a site or project
srbPasswd - Variable in class org.srb.SRBConnect
SRB User's password
srbPort - Variable in class org.srb.SRBConnect
the port number required to connect to the srb server
SRBProxyCommand - Class in org.srb
SProxyCommand is a Kepler Actor which has a functionality similar to the SRB command namely "Spcommand".
SRBProxyCommand(CompositeEntity, String) - Constructor for class org.srb.SRBProxyCommand
Construct an actor with the given container and name.
SRBQueryMD - Class in org.srb
Query the metadata.
SRBQueryMD(CompositeEntity, String) - Constructor for class org.srb.SRBQueryMD
Construct a constant source with the given container and name.
SRBReader - Class in org.srb
SRBReader/StreamGet is a Kepler Actor which has a functionality similar to the SRB command namely "Sget".However SRBReader actor downloads data from the SRB remote file with a streaming process as a byte of arrays instead of a parallel get.
SRBReader(CompositeEntity, String) - Constructor for class org.srb.SRBReader
Construct an actor with the given container and name.
srbUserName - Variable in class org.srb.SRBConnect
SRB Users are uniquely identified by their usernames combined with their domains.
SRBUtil - Class in org.srb
 
SRBUtil() - Constructor for class org.srb.SRBUtil
 
SRBWriter - Class in org.srb
SRBWriter/StreamPut is a Kepler Actor which has a functionality similar to the SRB command namely "Sput".However SRBWriter actor uploads data to the SRB with a streaming process by writing a byte of arrays to the SRB remote file instead of a parallel upload.
SRBWriter(CompositeEntity, String) - Constructor for class org.srb.SRBWriter
Construct an actor with the given container and name.
srcname - Variable in class org.ROADnet.OrbImageSource
The source name to request from the Orb.
srcname - Variable in class org.ROADnet.OrbPacketChannelExtractor
The sourcename to request from the ORB.
srcname - Variable in class org.ROADnet.OrbPacketObjectSource
The sourcename to request from the ORB.
srcname - Variable in class org.ROADnet.OrbSensorDataSource
The source name to request from the Orb.
srcname - Variable in class org.ROADnet.OrbWaveformSink
The source name to request from the Orb.
srcname - Variable in class org.ROADnet.OrbWaveformSource
The source name to request from the Orb.
SrmliteCopier - Class in org.sdm.spa.actors.transport
This class copies files/directories from one machine to another using the srmlite protocol.
SrmliteCopier() - Constructor for class org.sdm.spa.actors.transport.SrmliteCopier
 
srmProtocol - Variable in class org.sdm.spa.actors.transport.GenericFileCopier
Protocol that srmlite should internally use.
Ssh2Exec - Class in org.sdm.spa
FIXME THIS ACTOR SHARES DUPLICATE CODE WITH Ssh2Exec.
Ssh2Exec(CompositeEntity, String) - Constructor for class org.sdm.spa.Ssh2Exec
Construct an SSH2 actor with the given container and name.
Ssh2Exec.MyUserInfo - Class in org.sdm.spa
 
sshClient - Variable in class org.kepler.ssh.GsiSshExec
 
SshDirectoryList - Class in org.kepler.actor.io
Obsolete actor.
SshDirectoryList(CompositeEntity, String) - Constructor for class org.kepler.actor.io.SshDirectoryList
Construct an actor with the given container and name.
SshDirectoryList_v1_1 - Class in org.kepler.actor.io
Actor for directory listing.
SshDirectoryList_v1_1(CompositeEntity, String) - Constructor for class org.kepler.actor.io.SshDirectoryList_v1_1
Construct an actor with the given container and name.
sshEvent(SshEvent) - Method in class org.kepler.provenance.ProvenanceRecorder
React to an ssh event.
SshEvent - Class in org.kepler.ssh
An event that is published by SSH package whenever - a session is opened or closed
SshEvent(int, String) - Constructor for class org.kepler.ssh.SshEvent
Create a new ssh event with the given parameters.
sshEvent(SshEvent) - Method in interface org.kepler.ssh.SshEventListener
Report an ssh activity.
SshEventListener - Interface in org.kepler.ssh
A SshEventListener listens for events that are issued by the ssh package.
SshEventRegistry - Class in org.kepler.ssh
This class provides a registry to store subscriptions to SshEvents.
SshException - Exception in org.kepler.ssh
Exception for the ssh class failures thrown in Ssh*.java
SshException(String) - Constructor for exception org.kepler.ssh.SshException
 
SshExec - Class in org.kepler.ssh
This class provides functionality to use an SSH session to execute remote commands and to transfer files on a remote machine.
SshExec(String, String) - Constructor for class org.kepler.ssh.SshExec
 
SshExec(String, String, int) - Constructor for class org.kepler.ssh.SshExec
 
SshExec(String) - Constructor for class org.kepler.ssh.SshExec
Create and SshExec object from a combined target string.
SshSession - Class in org.kepler.actor.ssh
Creates an ssh session to a remote host.
SshSession(CompositeEntity, String) - Constructor for class org.kepler.actor.ssh.SshSession
Construct an SshSession actor with the given container and name.
SshTest(String, int, int) - Constructor for class org.kepler.ssh.TestExecMulti.SshTest
 
stackTraceToString(Throwable) - Static method in exception com.microstar.xml.XmlException
Return the stack trace of the given argument as a String.
stackTraceToString(Throwable) - Static method in exception ptolemy.kernel.util.KernelException
Return the stack trace of the given argument as a String.
standaloneInstance() - Static method in class org.kepler.sms.OntologyCatalog
 
STANDARD - Static variable in interface org.ecoinformatics.seek.querybuilder.QBBuilderInterface
 
standardDeviation - Variable in class ptolemy.actor.lib.colt.ColtNormal
standardDeviation.
standardDeviation - Variable in class ptolemy.actor.lib.Gaussian
The standard deviation of the random number.
standardDeviation - Variable in class ptolemy.actor.lib.Rician
The standard deviation of the random number.
standardDeviation(double[]) - Static method in class ptolemy.math.DoubleArrayStat
Return the standard deviation of the elements in the array.
standardDeviation(double[], boolean) - Static method in class ptolemy.math.DoubleArrayStat
Return the standard deviation of the elements in the array.
standardError - Variable in class org.cipres.kepler.GUIRunCIPRes
The standard error stream of the execution is sent out through this port.
standardError - Variable in class org.cipres.kepler.JRunCIPRes
The standard error stream of the execution is sent out through this port.
Standardize - Class in org.kepler.spark.mllib
 
Standardize(CompositeEntity, String) - Constructor for class org.kepler.spark.mllib.Standardize
 
StandardizeApply - Class in org.kepler.spark.mllib
 
StandardizeApply(CompositeEntity, String) - Constructor for class org.kepler.spark.mllib.StandardizeApply
 
standardOutput - Variable in class org.cipres.kepler.GUIRunCIPRes
The standard output stream of the execution is sent out through this port.
standardOutput - Variable in class org.cipres.kepler.JRunCIPRes
The standard output stream of the execution is sent out through this port.
STANDARDUNIT - Static variable in class org.kepler.objectmanager.data.db.Attribute
unit type for standard stmml units
start - Variable in class org.kepler.date.DateSequence
The starting date.
start(RootDoc) - Static method in class org.kepler.kar.KarDoclet
The entry point called from javadoc.
start(RootDoc) - Static method in class org.kepler.kar.SuperClassPathFinderDoclet
The entry point called from javadoc.
start() - Method in class org.kepler.module.core.HSQLManager
Start HSQL servers in a separate process.
start() - Method in interface org.kepler.module.ModuleHSQLManager
Start HSQL servers in a separate process.
start() - Method in class org.kepler.module.provenance.HSQLManager
Start HSQL servers in a separate process.
start() - Method in class org.kepler.monitor.FigureUpdater
Starts the dynamic behavior of the figure.
start() - Method in class org.kepler.monitor.MonitoredStatus.PropertyTimer
Starts the timer.
start() - Method in class org.kepler.objectmanager.cache.DataCacheObject
Description of the Method
start - Variable in class org.kepler.profiling.gui.ExecutionMonitorPanel.ActorInfo
The timestamp that execution started.
start() - Method in class org.kepler.spark.director.SparkJob
Start the job.
start() - Method in class org.kepler.webview.server.WebViewServer
Start the server.
start() - Method in interface org.kepler.workflowscheduler.gui.ProgressBarControlInterface
Start the progress bar
start() - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerDialog
Start the progress bar
start() - Method in class ptolemy.actor.gui.PtolemyApplet
Start execution of the model.
start - Variable in class ptolemy.actor.lib.ArrayLevelCrossing
The index from which to start looking for a threshold crossing.
start - Variable in class ptolemy.actor.lib.DiscreteClock
A port that, if connected, is used to specify when the clock starts.
start - Variable in class ptolemy.actor.lib.string.StringSubstring
The beginning index of the input string, which is the position of first character of the desired substring.
start - Variable in class ptolemy.actor.lib.TriggeredClock
Deprecated.
A port that, if connected, is used to specify when the clock starts.
start() - Method in class ptolemy.actor.LocalClock
Start the clock with the current drift as specified by the last call to LocalClock.setClockDrift(double).
start() - Method in class ptolemy.data.expr.PtParser
 
start() - Method in class ptolemy.gui.JTextAreaExec
Start running the commands.
start() - Method in class ptolemy.kernel.util.test.system.ChangeRequestTest
Start a run.
start() - Method in class ptolemy.kernel.util.test.system.TestDE
Start a run.
start() - Method in class ptolemy.plot.PlotLive
Make the plot active.
start() - Method in class ptolemy.plot.PlotLiveApplet
Start the plot thread.
start() - Method in interface ptolemy.util.ExecuteCommands
Start running the commands.
start() - Method in class ptolemy.util.StreamExec
Start running the commands.
START - Static variable in class ptolemy.vergil.basic.export.web.WebElement
Special constant indicating to put content in a div with the name "start" which occurs at the beginning of the HTML body.
start - Variable in class ptolemy.vergil.kernel.attributes.ArcAttribute
The starting angle of the arc in degrees.
start() - Method in class ptolemy.vergil.MoMLViewerApplet
Override the base class to not start execution of the model.
start() - Method in class ptolemy.vergil.TypeAnimatorApplet
Override the base class to avoid executing the model automatically when the applet starts, and instead to update type displays to the initial types of the ports.
START_TIME - Static variable in class org.kepler.workflowrunmanager.WRMDefaults
 
START_TIME_COLUMN_WIDTH - Static variable in class org.kepler.workflowrunmanager.WRMDefaults
 
startAssignmentList() - Method in class ptolemy.data.expr.PtParser
 
startCapture(Object) - Static method in class ptolemy.media.javasound.LiveSound
Start audio capture.
startCapture(Object) - Method in interface ptolemy.media.javasound.LiveSoundInterface
Start audio capture.
startCapture(Object) - Method in class ptolemy.media.javasound.LiveSoundJavaSE
Start audio capture.
startCapture() - Method in class ptolemy.media.javasound.SoundCapture
Begin capturing audio.
startCompoundEdit() - Method in class ptolemy.gui.UndoListener
Start a compound undo edit.
startDay - Variable in class org.kepler.gis.actor.farsite.GenerateWindFile
The start day.
startDocument() - Method in class com.microstar.xml.demo.DtdDemo
Print a comment showing where the DTD (if any) begins.
startDocument() - Method in class com.microstar.xml.demo.EventDemo
Handle the start of the document by printing an event.
startDocument() - Method in class com.microstar.xml.demo.XmlApp
Handle the start of the document.
startDocument() - Method in class com.microstar.xml.demo.XmlApplet
Handle the start of the document.
startDocument() - Method in class com.microstar.xml.driver.SAXDriver
Implement com.microstar.xml.XmlHandler#startDocument.
startDocument() - Method in class com.microstar.xml.HandlerBase
Handle the start of the document.
startDocument() - Method in interface com.microstar.xml.XmlHandler
Start the document.
startDocument() - Method in class org.kepler.reporting.rio.fop.tools.EasyGenerationContentHandlerProxy
 
startDocument() - Method in class ptolemy.configs.test.ValidatingXMLParser
 
startDocument() - Method in class ptolemy.moml.MoMLParser
Start a document.
startDocument() - Method in class ptolemy.plot.plotml.PlotBoxMLParser
Start a document.
startDocument() - Method in class ptolemy.plot.plotml.PlotMLParser
Start a document.
startDocument() - Method in class ptolemy.vergil.actor.DocManager
Start a document.
startElement(String) - Method in class com.microstar.xml.demo.EventDemo
Handle the start of an element by printing an event.
startElement(String) - Method in class com.microstar.xml.demo.XmlApp
Handle the start of an element.
startElement(String) - Method in class com.microstar.xml.demo.XmlApplet
Handle the start of an element.
startElement(String) - Method in class com.microstar.xml.driver.SAXDriver
Implement com.microstar.xml.XmlHandler#startElement.
startElement(String) - Method in class com.microstar.xml.HandlerBase
Handle the start of an element.
startElement(String) - Method in interface com.microstar.xml.XmlHandler
Start an element.
startElement(String) - Method in class org.kepler.reporting.rio.fop.tools.EasyGenerationContentHandlerProxy
Sends the notification of the beginning of an element.
startElement(String, Attributes) - Method in class org.kepler.reporting.rio.fop.tools.EasyGenerationContentHandlerProxy
Sends the notification of the beginning of an element.
startElement(String, String, String, Attributes) - Method in class org.kepler.reporting.rio.fop.tools.EasyGenerationContentHandlerProxy
 
startElement(String, String, String, Attributes) - Method in class org.kepler.workflowscheduler.gui.QueryingSchedulerServerResultParser
SAX Handler that is called at the start of each XML element
startElement(String, String, String, Attributes) - Method in class org.kepler.workflowscheduler.gui.ServerTimeZoneIDParser
SAX Handler that is called at the start of each XML element
startElement(String, String, String, Attributes) - Method in class ptolemy.configs.test.ValidatingXMLParser
 
startElement(String) - Method in class ptolemy.moml.MoMLParser
Start an element.
startElement(String) - Method in class ptolemy.plot.plotml.HistogramMLParser
Start an element.
startElement(String) - Method in class ptolemy.plot.plotml.PlotBoxMLParser
Start an element.
startElement(String) - Method in class ptolemy.plot.plotml.PlotMLParser
Start an element.
startElement(String) - Method in class ptolemy.vergil.actor.DocManager
Start an element.
startExternalEntity(String) - Method in class com.microstar.xml.demo.EventDemo
 
startExternalEntity(String) - Method in class com.microstar.xml.demo.XmlApp
 
startExternalEntity(String) - Method in class com.microstar.xml.demo.XmlApplet
 
startExternalEntity(String) - Method in class com.microstar.xml.driver.SAXDriver
Implement com.microstar.xml.XmlHandler#startExternalEntity.
startExternalEntity(String) - Method in class com.microstar.xml.HandlerBase
Handle the start of an external entity.
startExternalEntity(String) - Method in interface com.microstar.xml.XmlHandler
Begin an external entity.
startExternalEntity(String) - Method in class ptolemy.moml.MoMLParser
Handle the start of an external entity.
startExternalEntity(String) - Method in class ptolemy.plot.plotml.PlotBoxMLParser
Handle the start of an external entity.
startExternalEntity(String) - Method in class ptolemy.vergil.actor.DocManager
Handle the start of an external entity.
startFrame - Variable in class ptolemy.domains.sdf.lib.vq.ImageSequence
The starting frame number.
startHour - Variable in class org.kepler.gis.actor.farsite.GenerateWindFile
The start hour and minutes, e.g., 1230.
startIndex - Variable in class ptolemy.actor.lib.ArrayPeakSearch
The starting point of the search.
startIndex - Variable in class ptolemy.actor.lib.string.StringIndexOf
Port and parameter that determines where to start the search.
STARTING_ARRAYSIZE - Static variable in class ptolemy.domains.sdf.kernel.ArrayFIFOQueue
The starting size of the circular buffer, if the capacity is infinite.
startingDataset - Variable in class ptolemy.actor.lib.gui.Plotter
The starting dataset number to which data is plotted.
startingSequenceNumber - Variable in class ptolemy.actor.lib.Sequencer
The first number of the sequence.
startMonth - Variable in class org.kepler.gis.actor.farsite.GenerateWindFile
The start month.
startParse() - Method in class com.microstar.xml.demo.XmlApplet
Start a parse (in response to a button press).
startPlayback(Object) - Static method in class ptolemy.media.javasound.LiveSound
Start audio playback.
startPlayback(Object) - Method in interface ptolemy.media.javasound.LiveSoundInterface
Start audio playback.
startPlayback(Object) - Method in class ptolemy.media.javasound.LiveSoundJavaSE
Start audio playback.
startPlayback() - Method in class ptolemy.media.javasound.SoundPlayback
Perform initialization for the playback of audio data.
startPrefixMapping(String, String) - Method in class org.kepler.reporting.rio.fop.tools.EasyGenerationContentHandlerProxy
 
startProgressBar() - Method in class org.kepler.workflowscheduler.gui.ScheduleChangeController
Call this method to start progress bar
startRun(CompositeActor) - Method in class ptolemy.actor.gui.CompositeActorApplication
If the specified model has a manager and is not already running, then execute the model in a new thread.
startRun(CompositeActor) - Method in class ptolemy.actor.gui.CompositeActorSimpleApplication
If the specified model has a manager and is not already running, then execute the model in a new thread.
startRun() - Method in class ptolemy.actor.gui.ModelPane
If the model has a manager and is not already running, then execute the model in a new thread.
startRun() - Method in class ptolemy.actor.gui.run.CustomizableRunPane
If the model has a manager and is not already running, then execute the model in a new thread.
startRun() - Method in class ptolemy.actor.Manager
Start an execution in another thread and return.
startSearchProgressBar(boolean) - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.DatasetPanel
Method to starting search progress bar
startServer - Variable in class org.kepler.data.datasource.dataturbine.DataTurbineWriter
If true, start server if not already running (must provide archiveDirectory).
startServer(String, int) - Method in class org.sdm.spa.BrowserUIServer
 
startServerType - Variable in class org.kepler.ddp.director.DDPDirector
The type of DDP server to start (if one is not running).
startSimpleAssignment() - Method in class ptolemy.data.expr.PtParser
 
startString() - Method in class ptolemy.data.expr.PtParser
 
startText - Variable in class ptolemy.vergil.basic.export.web.IconScript
Text to insert in the start section of the web page.
startTime - Variable in class org.kepler.gis.actor.pylaski.GetPylaskiMeasurements
 
startTime - Variable in class ptolemy.actor.Director
The local time of model when this director is initialized.
startTime - Variable in class ptolemy.actor.lib.DelayStart
The start time.
startTimePortParam - Variable in class org.kepler.data.datasource.dataturbine.DataTurbine
Start time for Request or Subscribe modes. seconds or Date: yyyy-MM-dd HH:mm:ss
StartTimeQueryParse - Class in org.kepler.workflowrunmanager
 
StartTimeQueryParse(String) - Constructor for class org.kepler.workflowrunmanager.StartTimeQueryParse
 
startTrigger - Variable in class org.sdm.spa.MessageBasedWebService
Deprecated.
This is an optional input port that can be used to help the scheduling of the actor.
startTrigger - Variable in class org.sdm.spa.WebService
This is an optional input port that can be used to help the scheduling of the actor.
startTrigger - Variable in class org.sdm.spa.WebServiceStub
Deprecated.
 
startTrigger - Variable in class ptolemy.kernel.test.PortHasNoContainer
An optional input port that can be used to help the scheduling of the actor.
Starver - Class in ptolemy.domains.pn.lib
On each firing, read at most one input token and send it to the output port.
Starver(CompositeEntity, String) - Constructor for class ptolemy.domains.pn.lib.Starver
Construct an actor with the given container and name.
State() - Constructor for class org.kepler.monitor.MonitoredStatus.State
 
STATE - Static variable in class org.kepler.monitor.MonitoredStatus.State
The name of the state property.
state - Variable in class ptolemy.actor.lib.LinearDifferenceEquationSystem
Output port that produces DoubleMatrixToken of dimension r x 1 (see class comment).
state - Variable in class ptolemy.domains.continuous.kernel.ContinuousIntegrator
The state port.
State - Class in ptolemy.domains.modal.kernel
A State has two ports: one for linking incoming transitions, the other for outgoing transitions.
State(CompositeEntity, String) - Constructor for class ptolemy.domains.modal.kernel.State
Construct a state with the given name contained by the specified composite entity.
stateChanged(ChangeEvent) - Method in class org.ecoinformatics.seek.querybuilder.QBApp
Notify when TAB changes
stateChanged(ChangeEvent) - Method in class org.kepler.gui.frame.TabbedKeplerGraphFrame
React to a change in the state of the tabbed pane.
stateChanged(ChangeEvent) - Method in class ptolemy.actor.lib.gui.SliderSource
The value of the slider changed, record the new value.
stateChanged(ChangeEvent) - Method in class ptolemy.gui.Query.SliderListener
Call all registered QueryListeners.
stateChanged(ChangeEvent) - Method in class ptolemy.vergil.modal.CaseGraphFrame
React to a change in the state of the tabbed pane.
StateChangeEvent - Class in org.kepler.gui.state
An event that represents a state change in the application, showing both the state that changed and the source of the state change.
StateChangeEvent(Component, String, NamedObj) - Constructor for class org.kepler.gui.state.StateChangeEvent
Construct a new StateChange event.
StateChangeListener - Interface in org.kepler.gui.state
Any object that is interested in the status of the state changed events should implement this interface and register with the StateChangeMonitor to be notified of changes.
StateChangeMonitor - Class in org.kepler.gui.state
Maintain a registry of objects that are interested in changes in application state.
StateController - Class in ptolemy.vergil.modal
This class provides interaction with nodes that represent states in an FSM graph.
StateController(GraphController) - Constructor for class ptolemy.vergil.modal.StateController
Create a state controller associated with the specified graph controller.
StateController(GraphController, AttributeController.Access) - Constructor for class ptolemy.vergil.modal.StateController
Create a state controller associated with the specified graph controller.
StateController.LookInsideAction - Class in ptolemy.vergil.modal
An action to look inside a state at its refinement, if it has one.
StateController.StateRenderer - Class in ptolemy.vergil.modal
Render the state as a circle, unless it has a custom icon.
stateDependentCausality - Variable in class ptolemy.domains.modal.kernel.FSMActor
Indicate whether input/output dependencies can depend on the state.
stateDependentCausality - Variable in class ptolemy.domains.modal.modal.ModalModel
Indicate whether input/output dependencies can depend on the state.
StateEvent - Class in ptolemy.domains.modal.kernel
An event indicating a state change.
StateEvent(FSMActor, State) - Constructor for class ptolemy.domains.modal.kernel.StateEvent
Construct an event with the specified source and destination state.
StateFigure - Class in org.kepler.monitor.figure
A figure with a current state.
StateFigure(RectangularShape) - Constructor for class org.kepler.monitor.figure.StateFigure
 
StateIcon - Class in ptolemy.vergil.modal
An icon that displays the name of the container in an appropriately sized rounded box.
StateIcon(NamedObj, String) - Constructor for class ptolemy.vergil.modal.StateIcon
Create a new icon with the given name in the given container.
stateInfo() - Method in class ptolemy.moml.unit.Solution
The current state of the solver.
StateModel() - Constructor for class ptolemy.vergil.modal.FSMGraphModel.StateModel
 
stateOutput - Variable in class ptolemy.domains.continuous.lib.LinearStateSpace
State output multiport.
StatePair - Class in ptolemy.domains.modal.kernel.ia
A pair of states.
StatePair(State, State) - Constructor for class ptolemy.domains.modal.kernel.ia.StatePair
Construct an instance with the specified states.
StateReceiver - Interface in ptolemy.actor
This is a marker interface for receivers that have state semantics.
StateRenderer(GraphModel) - Constructor for class ptolemy.vergil.modal.StateController.StateRenderer
Construct a state renderer.
StateSerializer - Interface in org.kepler.provenance
 
stateVariableNames - Variable in class ptolemy.domains.continuous.lib.DifferentialSystem
The names of the state variables, in an array of strings.
StaticALU - Class in ptolemy.actor.lib.tutorial
A static integer arithmetic logic unit.
StaticALU(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.tutorial.StaticALU
Construct an actor in the specified container with the specified name.
staticFactory - Static variable in class ptolemy.actor.gui.BrowserEffigy
A reference to the most recently created factory for this effigy.
staticFlag - Static variable in class ptolemy.data.expr.SimpleCharStream
Whether parser is static.
staticFlag - Static variable in class ptolemy.moml.unit.SimpleCharStream
Whether parser is static.
StaticGUIResources - Class in org.kepler.gui
Static resources for accessing ResourceBundles etc.
staticitemlabel - Variable in class org.kepler.reporting.gui.JLabelDragSource
 
StaticReportItem - Class in org.kepler.reporting.rio
 
StaticReportItem() - Constructor for class org.kepler.reporting.rio.StaticReportItem
 
StaticReportItem(String) - Constructor for class org.kepler.reporting.rio.StaticReportItem
 
StaticReportItemHR - Class in org.kepler.reporting.rio
 
StaticReportItemHR() - Constructor for class org.kepler.reporting.rio.StaticReportItemHR
 
StaticReportItemHR(String) - Constructor for class org.kepler.reporting.rio.StaticReportItemHR
 
StaticReportItemHR.ALIGNMENT_VALUES - Enum in org.kepler.reporting.rio
 
StaticReportItemHR.StaticReportItemHRProperties - Enum in org.kepler.reporting.rio
 
StaticReportItemHR.WIDTH_VALUES - Enum in org.kepler.reporting.rio
 
StaticReportItemImage - Class in org.kepler.reporting.rio
 
StaticReportItemImage() - Constructor for class org.kepler.reporting.rio.StaticReportItemImage
 
StaticReportItemImage(String) - Constructor for class org.kepler.reporting.rio.StaticReportItemImage
 
StaticReportItemImage.SCALE_VALUES - Enum in org.kepler.reporting.rio
 
StaticReportItemImage.StaticReportItemImageProperties - Enum in org.kepler.reporting.rio
 
StaticReportItemLabel - Class in org.kepler.reporting.rio
 
StaticReportItemLabel() - Constructor for class org.kepler.reporting.rio.StaticReportItemLabel
 
StaticReportItemLabel(String) - Constructor for class org.kepler.reporting.rio.StaticReportItemLabel
 
StaticReportItemSection - Class in org.kepler.reporting.rio
 
StaticReportItemSection() - Constructor for class org.kepler.reporting.rio.StaticReportItemSection
 
StaticReportItemSection(String) - Constructor for class org.kepler.reporting.rio.StaticReportItemSection
 
StaticReportItemSection.AlignmentValues - Enum in org.kepler.reporting.rio
 
StaticReportItemSection.BreakValues - Enum in org.kepler.reporting.rio
 
StaticReportItemSection.FontSizeValues - Enum in org.kepler.reporting.rio
 
StaticReportItemSection.StaticReportItemSectionProperties - Enum in org.kepler.reporting.rio
 
StaticReportItemText - Class in org.kepler.reporting.rio
 
StaticReportItemText() - Constructor for class org.kepler.reporting.rio.StaticReportItemText
 
StaticReportItemText(String) - Constructor for class org.kepler.reporting.rio.StaticReportItemText
 
StaticReportItemText.StaticReportItemTextProperties - Enum in org.kepler.reporting.rio
 
StaticReportItemText.TextAlignment - Enum in org.kepler.reporting.rio
 
StaticReportItemText.TextSize - Enum in org.kepler.reporting.rio
 
StaticReportItemText.TextWeight - Enum in org.kepler.reporting.rio
 
StaticResources - Class in org.kepler.util
Static resources for accessing ResourceBundles.
StaticResources() - Constructor for class org.kepler.util.StaticResources
 
StaticSchedulingDirector - Class in ptolemy.actor.sched
A director that uses static scheduling to govern the execution of the CompositeActor it belongs to.
StaticSchedulingDirector() - Constructor for class ptolemy.actor.sched.StaticSchedulingDirector
Construct a director in the default workspace with an empty string as its name.
StaticSchedulingDirector(Workspace) - Constructor for class ptolemy.actor.sched.StaticSchedulingDirector
Construct a director in the workspace with an empty name.
StaticSchedulingDirector(CompositeEntity, String) - Constructor for class ptolemy.actor.sched.StaticSchedulingDirector
Construct a director in the given container with the given name.
statistics(String) - Method in class ptolemy.kernel.CompositeEntity
Return a string describing how many actors, parameters, ports, and relations are in this CompositeEntity.
status - Variable in class org.kepler.job.Job
 
status() - Method in class org.kepler.job.Job
Check the status of the job
status(String) - Method in class org.kepler.job.JobManager
Check the status of the job
status(String, int) - Method in class org.kepler.job.JobManager
Check the status of the job and tasks if numTasks>0
status - Variable in class org.kepler.profiling.gui.ExecutionMonitorPanel.ActorInfo
The execution status.
status(String) - Method in class ptolemy.gui.Top
Display the specified message in the status bar.
status(String) - Static method in class ptolemy.util.MessageHandler
Display a status message to the user.
status(String) - Method in interface ptolemy.util.StatusHandler
Display a status message.
StatusBar - Class in ptolemy.gui
A status bar with a message and a progress bar, for putting at the bottom of application windows.
StatusBar() - Constructor for class ptolemy.gui.StatusBar
Create a new status bar with an empty label and progress at zero.
StatusChecker - Class in org.resurgence.actor
FIXME: Add documents here.
StatusChecker(CompositeEntity, String) - Constructor for class org.resurgence.actor.StatusChecker
Construct a StatusChecker actor with the given container and name.
statusCode - Variable in class org.kepler.actor.job.JobStatus
Status code of the job 0 : for some error during execution or if jobID is invalid 1 : not in queue: i.e. already finished if it had ever been there (this is good news!)
statusCode - Variable in class org.kepler.job.JobStatusInfo
 
statuscode_tokenProdRate - Variable in class org.kepler.actor.job.JobStatus
The rate parameter for the output port.
StatusHandler - Interface in ptolemy.util
Interface for objects that can display status messages.
statusMessage - Variable in class ptolemy.actor.lib.CatchExceptionAttribute
The latest action, if any, taken by the CatchExceptionAttribute.
statusMessage - Variable in class ptolemy.actor.lib.ExceptionManager
The latest action, if any, taken by the CatchExceptionAttribute.
statusPort - Variable in class org.kepler.actor.database.DatabaseTableCreator
Output of this actor.
STD_IN - Static variable in class ptolemy.util.FileUtilities
Standard in as a reader, which will be non-null only after a call to openForReading("System.in").
STD_OUT - Static variable in class ptolemy.util.FileUtilities
Standard out as a writer, which will be non-null only after a call to openForWriting("System.out").
stdCol - Variable in class org.kepler.spark.mllib.KMeansApply
Name of standard vector column
stdCol - Variable in class org.kepler.spark.mllib.StandardizeApply
Name of standardized vector column to append
stdColName - Variable in class org.kepler.spark.mllib.KMeansClustering
Name of the standardized vector column in the input dataframe
stdColName - Variable in class org.kepler.spark.mllib.Standardize
Name of the output column containing standardized vectors
stderr - Variable in class org.geon.Scp
The error that were reported by the remote execution or while connecting.
stderr - Variable in class org.kepler.actor.gsissh.ExecGsisshCmd
The error that were reported by the remote execution or while connecting.
stderr - Variable in class org.kepler.actor.ssh.ExecuteCmd
The error that were reported by the remote execution or while connecting.
stderr - Variable in class org.sdm.spa.Ssh2Exec
The error that were reported by the remote execution or while connecting.
stderr(String) - Method in class ptolemy.actor.gui.exec.ExecShellTableau
Append the text message to text area.
stderr(String) - Method in class ptolemy.gui.JTextAreaExec
Append the text message to stderr.
stderr(String) - Method in interface ptolemy.util.ExecuteCommands
Append the text message to stderr.
stderr(String) - Method in class ptolemy.util.StreamExec
Append the text message to stderr.
stderr(String) - Method in class ptolemy.util.StringBufferExec
Append the text message to the StringBuffer.
stdout - Variable in class org.geon.Scp
The string representation of the file path for userName's ssh identity file if the user wants to connect without having to enter the password all the time.
stdout - Variable in class org.kepler.actor.gsissh.ExecGsisshCmd
Output of the command as it would output to the standard shell output.
stdout - Variable in class org.kepler.actor.ssh.ExecuteCmd
Output of the command as it would output to the standard shell output.
stdout - Variable in class org.sdm.spa.Ssh2Exec
Output of the command as it would output to the standard shell output.
stdout(String) - Method in class ptolemy.actor.gui.exec.ExecShellTableau
Append the text message to the text area.
stdout(String) - Method in class ptolemy.gui.JTextAreaExec
Append the text message to the output.
stdout(String) - Method in interface ptolemy.util.ExecuteCommands
Append the text message to stderr.
stdout(String) - Method in class ptolemy.util.StreamExec
Append the text message to the output.
stdout(String) - Method in class ptolemy.util.StringBufferExec
Append the text message to the StringBuffer.
StdoutSparkListener - Class in org.kepler.spark.actor
JavaSparkListener that prints events to stdout.
StdoutSparkListener() - Constructor for class org.kepler.spark.actor.StdoutSparkListener
 
step - Variable in class org.kepler.date.DateSequence
The increment between steps.
step - Variable in class ptolemy.actor.lib.gem5.Gem5Wrapper
The amount by which the ramp output is incremented on each iteration.
step - Variable in class ptolemy.actor.lib.Ramp
The amount by which the ramp output is incremented on each iteration.
stepSize - Variable in class ptolemy.domains.sdf.lib.LMSAdaptive
The adaptation step size.
stepUnits - Variable in class org.kepler.date.DateSequence
The units of the incremental step.
stop() - Method in class org.dart.matlab.MatlabExpression
 
stop() - Method in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreDataSource
stop is used by the Director to indicate to the actor that execution is to be stopped.
stop() - Method in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource
Callback method that indicates that the workflow is being stopped.
stop() - Method in class org.kepler.actor.Logger
Close all opened log files.
stop() - Method in class org.kepler.actor.MappedLogger
Close all opened log files.
stop() - Method in class org.kepler.actor.ssh.SshSession
Close all sessions.
stop() - Method in class org.kepler.data.datasource.dataone.DataOneActor
The director told us to stop firing immediately.
stop() - Method in class org.kepler.data.datasource.dataturbine.DataTurbine
The director told us to stop firing immediately.
stop - Variable in class org.kepler.date.DateSequence
The stopping date.
stop() - Method in class org.kepler.ddp.director.DDPDirector
Stop any running DDP jobs.
stop() - Method in class org.kepler.ddp.director.DDPEngine
Stop any running DDP jobs.
stop() - Method in class org.kepler.hadoop.director.HadoopEngine
Stop any running Hadoop jobs.
stop() - Method in class org.kepler.metadata.MetadataParser
The director told us to stop firing immediately.
stop() - Method in class org.kepler.module.core.HSQLManager
Stop HSQL servers in a separate process.
stop() - Method in interface org.kepler.module.ModuleHSQLManager
Stop HSQL servers in a separate process.
stop() - Method in class org.kepler.module.provenance.HSQLManager
Stop HSQL servers in a separate process.
stop() - Method in class org.kepler.monitor.FigureUpdater
Stops the dynamic behavior of the figure.
stop() - Method in class org.kepler.monitor.MonitoredStatus.PropertyTimer
Stops the timer.
stop() - Method in class org.kepler.objectmanager.cache.DataCacheObject
 
stop() - Method in class org.kepler.scriptengine.ScriptEngineActor
Invoke the stop() method in the script.
stop() - Method in class org.kepler.spark.director.SparkEngine
Stop any running Spark jobs.
stop() - Method in class org.kepler.spark.director.SparkJob
 
stop() - Method in class org.kepler.stratosphere.director.StratosphereEngine
Stop any running Stratosphere jobs.
stop() - Method in class org.kepler.webview.actor.WebView
 
stop() - Method in class org.kepler.webview.server.WebViewServer
Stop the server.
stop() - Method in interface org.kepler.workflowscheduler.gui.ProgressBarControlInterface
Stop the progress bar
stop() - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerDialog
Stop the progress bar
stop() - Method in class org.sdm.spa.gui.UserInteractiveShell
Override the base class to call notifyAll() to get out of any waiting.
stop() - Method in class org.sdm.spa.TextualInteractionShell
Override the base class to call notifyAll() to get out of any waiting.
stop() - Method in class ptolemy.actor.AtomicActor
Request that execution of the current iteration stop as soon as possible.
stop() - Method in class ptolemy.actor.CompositeActor
Request that execution stop as soon as possible.
stop() - Method in class ptolemy.actor.Director
Request that the director cease execution altogether.
stop() - Method in interface ptolemy.actor.Executable
Request that execution of this Executable stop as soon as possible.
stop() - Method in class ptolemy.actor.gui.PtolemyApplet
Stop execution of the model.
STOP - Static variable in class ptolemy.actor.lib.CatchExceptionAttribute
String value for the "stop" policy.
stop - Variable in class ptolemy.actor.lib.DiscreteClock
A port that, if connected, is used to specify when the clock stops.
stop() - Method in class ptolemy.actor.lib.Exec
Override the base class and terminate the process.
stop() - Method in class ptolemy.actor.lib.gui.InteractiveDialog
Override the base class to call notifyAll() to get out of any waiting.
stop() - Method in class ptolemy.actor.lib.gui.InteractiveShell
Override the base class to call notifyAll() to get out of any waiting.
stop() - Method in class ptolemy.actor.lib.hoc.ApplyFilterOverArray
Override the base class to call stop() on the referenced model.
stop() - Method in class ptolemy.actor.lib.hoc.ModelReference
Override the base class to call stop() on the referenced model.
STOP - Static variable in class ptolemy.actor.lib.hoc.ThreadedComposite.TokenFrame
STOP is a frame provided to the inside thread to indicate that it should stop executing.
stop() - Method in class ptolemy.actor.lib.python.PythonScript
Invoke the stop() method if defined in the script.
Stop - Class in ptolemy.actor.lib
An actor that stops execution of a model when it receives a true token on any input channel.
Stop(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Stop
Construct an actor in the specified container with the specified name.
stop - Variable in class ptolemy.actor.lib.string.StringSubstring
The ending index of the input string, which is 1 greater than the position of last letter of the desired substring.
stop - Variable in class ptolemy.actor.lib.TriggeredClock
Deprecated.
A port that, if connected, is used to specify when the clock stops.
stop() - Method in class ptolemy.actor.LocalClock
Stop the clock.
stop() - Method in class ptolemy.actor.Manager
If the state is not IDLE, set a flag to request that execution stop and exit in a completely deterministic fashion at the end of the next toplevel iteration.
stop() - Method in class ptolemy.actor.parameters.ParameterSet
Do nothing.
stop() - Method in class ptolemy.actor.process.ProcessDirector
Request that the director cease execution altogether.
stop() - Method in class ptolemy.domains.de.kernel.DEDirector
Request the execution of the current iteration to stop.
stop() - Method in class ptolemy.domains.modal.kernel.FSMActor
Request that execution of the current iteration stop as soon as possible.
stop() - Method in class ptolemy.gui.test.GraphicalMessageHandlerApplet
Stop execution of the model.
stop() - Method in class ptolemy.plot.PlotLive
Stop the plot.
stop() - Method in class ptolemy.plot.PlotLiveApplet
Stop the plot thread.
stop() - Method in class ptolemy.vergil.VergilApplet
Stop execution of the model.
STOP_ITERATING - Static variable in interface ptolemy.actor.Executable
An indicator that the actor does not wish to be fired again.
stopCapture(Object) - Static method in class ptolemy.media.javasound.LiveSound
Stop audio capture.
stopCapture(Object) - Method in interface ptolemy.media.javasound.LiveSoundInterface
Stop audio capture.
stopCapture(Object) - Method in class ptolemy.media.javasound.LiveSoundJavaSE
Stop audio capture.
stopCapture() - Method in class ptolemy.media.javasound.SoundCapture
Stop capturing audio.
stopCellEditing() - Method in class org.kepler.plotting.table.ColorTableCellEditor
 
stopCellEditing() - Method in class org.kepler.tagging.gui.ColorTableCellEditor
 
stopCellEditing() - Method in class org.kepler.workflowrunmanager.gui.DateCellEditor
Forwards the message from the CellEditor to the delegate.
stopCellEditing() - Method in class org.kepler.workflowrunmanager.gui.DurationCellEditor
Forwards the message from the CellEditor to the delegate.
stopCellEditing() - Method in class org.kepler.workflowrunmanager.gui.ExecIdCellEditor
Forwards the message from the CellEditor to the delegate.
stopCellEditing() - Method in class ptolemy.actor.gui.PortConfigurerDialog.ValidatingComboBoxCellEditor
Check the selection and determine whether we should stop editing.
stopCellEditing() - Method in class ptolemy.actor.gui.PortConfigurerDialog.ValidatingJTextFieldCellEditor
Check the selection and determine whether we should stop editing.
stopElement - Variable in class org.sdm.spa.DelayStreamToASpecificElement
The string pattern of the stopping element.
StopFile - Variable in class org.sdm.spa.ProcessFileRT
 
stopFire() - Method in class org.kepler.scriptengine.ScriptEngineActor
Invoke the stopFire() method in the script.
stopFire() - Method in class org.sdm.spa.CommandLineExec
Override the base class to stop waiting for input data.
stopFire() - Method in class ptolemy.actor.AtomicActor
Request that execution of the current iteration complete.
stopFire() - Method in class ptolemy.actor.CompositeActor
Request that execution of the current iteration complete.
stopFire() - Method in class ptolemy.actor.Director
Request that execution of the current iteration stop.
stopFire() - Method in interface ptolemy.actor.Executable
Request that execution of the current iteration complete.
stopFire() - Method in class ptolemy.actor.lib.Exec
Override the base class to stop waiting for input data.
stopFire() - Method in class ptolemy.actor.lib.hoc.ApplyFilterOverArray
Override the base class to call stopFire() on the referenced model.
stopFire() - Method in class ptolemy.actor.lib.hoc.ModelReference
 
stopFire() - Method in class ptolemy.actor.lib.python.PythonScript
Invoke the stopFire() method if defined in the script.
stopFire() - Method in class ptolemy.actor.parameters.ParameterSet
Do nothing.
stopFire() - Method in class ptolemy.actor.process.ProcessDirector
Request that execution stop at the conclusion of the current iteration.
stopFire() - Method in class ptolemy.domains.continuous.lib.LinearStateSpace
Stop the current firing.
stopFire() - Method in class ptolemy.domains.de.kernel.DEDirector
Request the execution of the current iteration to complete.
stopFire() - Method in class ptolemy.domains.modal.kernel.FSMActor
Do nothing.
stopInputBranchController() - Method in class ptolemy.actor.process.CompositeProcessDirector
Stop the input branch controller of this director.
stopmask - Variable in class org.kepler.actor.io.SshDirectoryList_v1_1
The stop file mask for stopping when such file(s) found.
stopOutputBranchController() - Method in class ptolemy.actor.process.CompositeProcessDirector
Stop the output branch controller of this director.
stopPlayback(Object) - Static method in class ptolemy.media.javasound.LiveSound
Stop audio playback.
stopPlayback(Object) - Method in interface ptolemy.media.javasound.LiveSoundInterface
Stop audio playback.
stopPlayback(Object) - Method in class ptolemy.media.javasound.LiveSoundJavaSE
Stop audio playback.
stopPlayback() - Method in class ptolemy.media.javasound.SoundPlayback
Stop playing/writing audio.
stopProgressBar() - Method in class org.kepler.workflowscheduler.gui.ScheduleChangeController
Call this method to stop progress bar
stopRun(CompositeActor) - Method in class ptolemy.actor.gui.CompositeActorSimpleApplication
If the specified model has a manager and is executing, then stop execution by calling the stop() method of the manager.
stopRun() - Method in class ptolemy.actor.gui.ModelPane
If the model has a manager and is executing, then stop execution by calling the stop() method of the manager.
stopRun() - Method in class ptolemy.actor.gui.run.CustomizableRunPane
If the model has a manager and is executing, then stop execution by calling the stop() method of the manager.
stopServer() - Method in class org.sdm.spa.BrowserUIServer
 
stopTime - Variable in class org.kepler.gis.actor.pylaski.GetPylaskiMeasurements
 
stopTime - Variable in class ptolemy.actor.Director
The stop time of the model.
stopTime - Variable in class ptolemy.actor.lib.PoissonClock
The time at which postfire() should return false.
stopTime - Variable in class ptolemy.actor.lib.TimedSource
The time at which postfire() should return false.
stopTimeIsLocal - Variable in class ptolemy.actor.lib.TimedSource
If true, use the local time to compare against the stopTime parameter, rather than the global time.
stopWhenQueueIsEmpty - Variable in class ptolemy.domains.de.kernel.DEDirector
Specify whether the execution stops when the queue is empty.
store(String[]) - Static method in class org.kepler.CommandLineArgs
 
store(double, String) - Method in class ptolemy.domains.pn.demo.QR.ArrayIndex
Store a data value at a particular location given by the key string.
STOREDPROCEDUREENTITY - Static variable in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200Parser
 
STOREDPROCEDUREENTITY - Static variable in class org.kepler.objectmanager.data.db.Entity
 
storePTIIMenuItems(JMenuItem, StringBuffer, String, Map<String, Action>) - Static method in class org.kepler.gui.MenuMapper
Recurse through all the submenu heirarchy beneath the passed JMenu parameter, and for each "leaf node" (ie a menu item that is not a container for other menu items), add the Action and its menu path to the passed Map
StoreStateChangeEvent - Interface in org.kepler.gui.state
In order to handle local event, we need to compare the parent of event's source and GUIAction'parent.
storeTableRecord(String, String) - Method in class org.ecoinformatics.seek.dataquery.DBTableExistenceChecker
Method will store a gnerated table info (table name and url) into a persistant table
storingStateChangeEvent(StateChangeEvent) - Method in interface org.kepler.gui.state.StoreStateChangeEvent
This method is called if a StateChangeEvent need to be stored
STR - Static variable in class org.kepler.objectmanager.data.DataType
 
StratosphereDirector - Class in org.kepler.stratosphere.director
A DDP director that uses the Stratosphere engine to convert DDP pattern actors (Map, Reduce, Cross, CoGroup, and Match) and I/O actors (DDPDataSink and DDPDataSource) into a Stratosphere job and runs it on the server.
StratosphereDirector(CompositeEntity, String) - Constructor for class org.kepler.stratosphere.director.StratosphereDirector
Create a new StratosphereDirector in a container with a specific name.
StratosphereDirector(Workspace) - Constructor for class org.kepler.stratosphere.director.StratosphereDirector
Create a new StratosphereDirector for a workspace.
StratosphereEngine - Class in org.kepler.stratosphere.director
An engine than runs workflows in Stratosphere.
StratosphereEngine(DDPDirector) - Constructor for class org.kepler.stratosphere.director.StratosphereEngine
Create a new StratosphereEngine.
stream() - Method in class ptolemy.util.FileUtilities.StreamAndURL
Return the stream.
StreamAndURL(InputStream, URL) - Constructor for class ptolemy.util.FileUtilities.StreamAndURL
Create an object containing an InputStream and a URL.
StreamChangeListener - Class in ptolemy.kernel.util
A change listener that describes the changes on the standard output.
StreamChangeListener() - Constructor for class ptolemy.kernel.util.StreamChangeListener
Create a change listener that sends messages to the standard output.
StreamChangeListener(OutputStream) - Constructor for class ptolemy.kernel.util.StreamChangeListener
Create a change listener that sends messages to the specified stream.
StreamDemo - Class in com.microstar.xml.demo
Demonstration application showing Æfred's event stream from a stream.
StreamDemo() - Constructor for class com.microstar.xml.demo.StreamDemo
 
StreamErrorHandler - Class in ptolemy.moml
Basic error handler for the MoMLParser class.
StreamErrorHandler() - Constructor for class ptolemy.moml.StreamErrorHandler
Create an error handler that sends messages to the standard error.
StreamErrorHandler(OutputStream) - Constructor for class ptolemy.moml.StreamErrorHandler
Create an error handler that sends messages to the specified stream.
StreamExec - Class in ptolemy.util
Execute commands in a subprocess and send the results to stderr and stdout.
StreamExec() - Constructor for class ptolemy.util.StreamExec
Create a StreamExec.
streamExec - Variable in class ptolemy.util.test.ThreadStreamExec
The stream.
StreamExecutionListener - Class in ptolemy.actor
A default implementation of the ExecutionListener interface.
StreamExecutionListener() - Constructor for class ptolemy.actor.StreamExecutionListener
Create a listener that sends messages to the standard output.
StreamExecutionListener(OutputStream) - Constructor for class ptolemy.actor.StreamExecutionListener
Create a listener that sends messages to the given output stream.
streamingMode - Variable in class org.kepler.actor.ssh.ExecuteCmd
Specifying whether the output should be sent in a streaming mode.
streamingMode - Variable in class org.sdm.spa.Ssh2Exec
Specifying whether the output should be sent in a streaming mode.
StreamListener - Class in ptolemy.kernel.util
A debug listener that sends messages to a stream or to the standard output.
StreamListener() - Constructor for class ptolemy.kernel.util.StreamListener
Create a debug listener that sends messages to the standard output.
StreamListener(OutputStream) - Constructor for class ptolemy.kernel.util.StreamListener
Create a debug listener that sends messages to the specified stream.
StreamToMatrix - Class in ptolemy.domains.pn.demo.QR
Convert a stream of Double Tokens into a Matrix.
StreamToMatrix(CompositeEntity, String) - Constructor for class ptolemy.domains.pn.demo.QR.StreamToMatrix
Construct an actor with the given container and name.
StreamValueListener - Class in ptolemy.kernel.util.test
A value listener that describes value changes on the standard output when the value of an object implementing Settable changes.
StreamValueListener() - Constructor for class ptolemy.kernel.util.test.StreamValueListener
Create a value listener that sends messages to the standard output.
StreamValueListener(OutputStream) - Constructor for class ptolemy.kernel.util.test.StreamValueListener
Create a value listener that sends messages to the specified stream.
strFileOrURL - Variable in class org.geon.OpenDBConnection
 
STRING - Static variable in class org.ecoinformatics.seek.dataquery.DBTablesGenerator
 
STRING - Static variable in class org.kepler.objectmanager.data.DataType
text type.
string - Variable in class org.resurgence.actor.ArrayToString
The output port, which contains the string.
string - Variable in class org.resurgence.actor.StringSplitter
The input port, which contains the string.
string - Variable in class org.resurgence.actor.StringToInt
The input port, which has type string.
string - Variable in class org.resurgence.actor.StringToLong
The input port, which has type string.
string - Variable in class org.resurgence.actor.TextFileWriter
The first input port, which contains the text to be written.
STRING - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
STRING - Static variable in class ptolemy.data.type.BaseType
The string data type.
StringAccumulator - Class in org.resurgence.actor
This actor reads several strings and writes them into one string.
StringAccumulator(CompositeEntity, String) - Constructor for class org.resurgence.actor.StringAccumulator
Construct a StringAccumulator with the given container and name.
StringAttribute - Class in ptolemy.kernel.util
An attribute that has a string value.
StringAttribute() - Constructor for class ptolemy.kernel.util.StringAttribute
Construct an attribute in the default workspace with an empty string as its name.
StringAttribute(Workspace) - Constructor for class ptolemy.kernel.util.StringAttribute
Construct an attribute in the specified workspace with an empty string as a name.
StringAttribute(NamedObj, String) - Constructor for class ptolemy.kernel.util.StringAttribute
Construct an attribute with the given name contained by the specified container.
StringBufferExec - Class in ptolemy.util
Execute commands in a subprocess and accumulate the output in a StringBuffer.
StringBufferExec() - Constructor for class ptolemy.util.StringBufferExec
Create a StringBufferExec.
StringBufferExec(boolean) - Constructor for class ptolemy.util.StringBufferExec
Create a StringBufferExec and optionally append to stderr and stdout as the commands are executed.
StringCompare - Class in ptolemy.actor.lib.string
Compare two strings specified either as inputs or parameters.
StringCompare(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.string.StringCompare
Construct an actor with the given container and name.
StringConst - Class in ptolemy.actor.lib
Produce a constant output of type string.
StringConst(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.StringConst
Construct a constant source with the given container and name.
StringConstantParameter - Class in ptolemy.data.expr
This class is identical to StringParameter except that its visibility is set to "NOT_EDITABLE" by default.
StringConstantParameter(NamedObj, String) - Constructor for class ptolemy.data.expr.StringConstantParameter
Construct a parameter with the given name contained by the specified entity.
StringFunction - Class in ptolemy.actor.lib.string
Produce the output string generated by applying a user-specified string function on a provided input string.
StringFunction(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.string.StringFunction
Construct an actor with the given container and name.
StringIndexOf - Class in ptolemy.actor.lib.string
Output the index of a searchFor string contained in a given inText.
StringIndexOf(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.string.StringIndexOf
Construct an actor with the given container and name.
StringLength - Class in ptolemy.actor.lib.string
Output the length of a string provided at the input.
StringLength(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.string.StringLength
Construct an actor with the given container and name.
StringMatches - Class in ptolemy.actor.lib.string
Pattern match a string to a regular expression and output a true if it matches and a false if it does not.
StringMatches(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.string.StringMatches
Construct an actor with the given container and name.
StringMode - Static variable in interface ptolemy.data.expr.PtParserConstants
Lexical state.
stringModeElement() - Method in class ptolemy.data.expr.PtParser
 
StringModeIDBrace - Static variable in interface ptolemy.data.expr.PtParserConstants
Lexical state.
StringModeIDNone - Static variable in interface ptolemy.data.expr.PtParserConstants
Lexical state.
StringModeIDParen - Static variable in interface ptolemy.data.expr.PtParserConstants
Lexical state.
stringModeString() - Method in class ptolemy.data.expr.PtParser
 
StringOutputFormat - Class in org.kepler.stratosphere.io.output
Output Format which only sends string key and value to outputs.
StringOutputFormat() - Constructor for class org.kepler.stratosphere.io.output.StringOutputFormat
 
StringParameter - Class in ptolemy.data.expr
This subclass of Parameter is almost identical to Parameter except that it sets itself to string mode in the constructor.
StringParameter(NamedObj, String) - Constructor for class ptolemy.data.expr.StringParameter
Construct a parameter with the given name contained by the specified entity.
StringPNListener - Class in ptolemy.domains.pn.kernel.event.test
A PNProcessListener that listens for events generated by PNDirector and converts it to a string.
StringPNListener() - Constructor for class ptolemy.domains.pn.kernel.event.test.StringPNListener
 
StringReplace - Class in ptolemy.actor.lib.string
On each firing, look for instances of the pattern specified by pattern in stringToEdit and replace them with the string given by replacement.
StringReplace(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.string.StringReplace
Construct an actor with the given container and name.
stringRepresentation() - Method in class ptolemy.data.expr.Variable
Deprecated. 
StringReverse - Class in org.sdm.spa
Output the reverse of a string provided at the input.
StringReverse(CompositeEntity, String) - Constructor for class org.sdm.spa.StringReverse
Construct an actor with the given container and name.
StringSimpleReplace - Class in ptolemy.actor.lib.string
Deprecated.
This class is primarily used in models that will be code generated so that regular expressions are not needed in the output. In general, use StringReplace with the regularExpression parameter set to false.
StringSimpleReplace(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.string.StringSimpleReplace
Deprecated.
Construct an actor with the given container and name.
StringSplit - Class in ptolemy.actor.lib.string
This actor reads an input string and splits it into an array of strings.
StringSplit(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.string.StringSplit
Construct an actor with the given container and name.
StringSplitter - Class in org.resurgence.actor
Read a string and write an array filled with the parts of the string.
StringSplitter(CompositeEntity, String) - Constructor for class org.resurgence.actor.StringSplitter
Construct a StringSplitter with the given container and name.
StringsToRecord - Class in org.surge
This actor converts a set of labels and values to a record.
StringsToRecord(CompositeEntity, String) - Constructor for class org.surge.StringsToRecord
Construct a StringsToRecord source with the given container and name.
StringSubstring - Class in ptolemy.actor.lib.string
Output a substring of the string provided at the input.
StringSubstring(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.string.StringSubstring
Construct an actor with the given container and name.
StringToBoolean - Class in ptolemy.actor.lib.conversions
Convert a string to a boolean.
StringToBoolean(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.conversions.StringToBoolean
Construct an actor with the given container and name.
stringToColor(String) - Static method in class ptolemy.gui.Query
Convert the specified string to a color.
StringToDate - Class in ptolemy.actor.lib.conversions
Convert a string to a double.
StringToDate(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.conversions.StringToDate
Construct an actor with the given container and name.
StringToDouble - Class in ptolemy.actor.lib.conversions
Convert a string to a double.
StringToDouble(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.conversions.StringToDouble
Construct an actor with the given container and name.
stringToEdit - Variable in class ptolemy.actor.lib.string.StringReplace
The string to edit by replacing substrings that match the specified pattern with the specified replacement.
stringToEdit - Variable in class ptolemy.actor.lib.string.StringSimpleReplace
Deprecated.
The string to edit by replacing substrings that match the specified pattern with the specified replacement.
stringToElement(String) - Method in class org.sdm.spa.CreateRequestFromResult
 
StringToInt - Class in org.resurgence.actor
This actor converts a string to an integer.
StringToInt(CompositeEntity, String) - Constructor for class org.resurgence.actor.StringToInt
Construct an actor with the given container and name.
StringToInt - Class in ptolemy.actor.lib.conversions
Convert a StringToken to an IntToken.
StringToInt(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.conversions.StringToInt
Construct an actor with the given container and name.
StringToIntArray - Class in ptolemy.actor.lib.conversions
Convert a string to an integer-array.
StringToIntArray(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.conversions.StringToIntArray
Construct an actor with the given container and name.
StringToken - Class in ptolemy.data
A token that contains a string, or more specifically, a reference to an instance of String.
StringToken() - Constructor for class ptolemy.data.StringToken
Construct a token with an empty string.
StringToken(String) - Constructor for class ptolemy.data.StringToken
Construct a token with the specified string.
StringToLong - Class in org.resurgence.actor
This actor converts a string to a long.
StringToLong(CompositeEntity, String) - Constructor for class org.resurgence.actor.StringToLong
Construct an actor with the given container and name.
StringToN - Class in org.kepler.data.conversion
Convert a string or an array of strings to the type of the output port.
StringToN(CompositeEntity, String) - Constructor for class org.kepler.data.conversion.StringToN
Construct a StringToN with the given container and name.
StringToPolygon - Class in org.geon
This actor reads a string and outputs an array of coordinates and a string of region.
StringToPolygon(CompositeEntity, String) - Constructor for class org.geon.StringToPolygon
 
StringToUnsignedByteArray - Class in ptolemy.actor.lib.conversions
Convert a string to an array of unsigned byte.
StringToUnsignedByteArray(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.conversions.StringToUnsignedByteArray
Construct an actor with the given container and name.
stringToURL(String, URI, ClassLoader) - Static method in class ptolemy.util.StringUtilities
Deprecated.
Use FileUtilities.nameToURL instead.
stringToValue(String) - Static method in class org.json.JSONObject
Try to convert a string into a number, boolean, or null.
StringToXML - Class in ptolemy.actor.lib.conversions
Convert a string token to an xml token.
StringToXML(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.conversions.StringToXML
Construct an actor with the given container and name.
StringTransition - Class in org.kepler.tagging
Created by IntelliJ IDEA.
StringTransition(String, String, int, int, boolean) - Constructor for class org.kepler.tagging.StringTransition
 
StringTransition(String, String, Range, boolean) - Constructor for class org.kepler.tagging.StringTransition
If preTransition is true, it means that the range we are giving is of the changes given from the perspective of the original tags.
STRINGTYPE - Static variable in class org.kepler.objectmanager.data.DataType
 
StringUtilities - Class in ptolemy.util
A collection of utilities for manipulating strings.
stringValue() - Method in class ptolemy.actor.parameters.FilePortParameter
Return the string value of this parameter.
stringValue() - Method in class ptolemy.data.DateToken
Return the value of the token as a String.
stringValue() - Method in class ptolemy.data.expr.StringParameter
Return the string value of this parameter.
stringValue() - Method in class ptolemy.data.StringToken
Return the string that this token contains.
stringValue(String) - Method in class ptolemy.gui.Query
Deprecated.
Use getStringValue(String name) instead.
StructuredType - Class in ptolemy.data.type
Base class for structured type.
StructuredType() - Constructor for class ptolemy.data.type.StructuredType
 
StubBaseActor - Class in org.kepler.ddp.actor.pattern.stub
A base class for DDP pattern actor stubs.
StubBaseActor(CompositeEntity, String) - Constructor for class org.kepler.ddp.actor.pattern.stub.StubBaseActor
Construct a new StubBaseActor in a container with a given name.
StubSinkActor - Class in org.kepler.ddp.actor.pattern.stub
A base class for DDP pattern actor stubs that read data from the workflow.
StubSinkActor(CompositeEntity, String) - Constructor for class org.kepler.ddp.actor.pattern.stub.StubSinkActor
Construct a new StubSinkActor in a container with a given name.
StubSourceActor - Class in org.kepler.ddp.actor.pattern.stub
A base class for DDP pattern actor stubs that write data to the workflow.
StubSourceActor(CompositeEntity, String) - Constructor for class org.kepler.ddp.actor.pattern.stub.StubSourceActor
Construct a new StubSourceActor in a container with a given name.
StubUtilities - Class in org.kepler.hadoop.util
A collection of utilities used by Kepler hadoop module.
StubUtilities() - Constructor for class org.kepler.hadoop.util.StubUtilities
 
StubUtilities - Class in org.kepler.spark.stub
A collection of utilities used by Kepler Spark stubs.
StubUtilities() - Constructor for class org.kepler.spark.stub.StubUtilities
 
StubUtilities - Class in org.kepler.stratosphere.stub
A collection of utilities used by Kepler PACT stubs.
StubUtilities() - Constructor for class org.kepler.stratosphere.stub.StubUtilities
 
StyleConfigurer - Class in ptolemy.actor.gui.style
This class is an editor for the styles of the parameters of an object.
StyleConfigurer(NamedObj) - Constructor for class ptolemy.actor.gui.style.StyleConfigurer
Construct a configurer for the specified object.
styleSheetFile - Variable in class ptolemy.actor.lib.xslt.XSLTransformer
The file name or URL from which to read.
styleSheetParameters - Variable in class ptolemy.actor.lib.xslt.XSLTransformer
The parameters to be used in the stylesheet.
subarray(int) - Method in class ptolemy.data.ArrayToken
Return the contiguous subarray starting at the specified index to the end of this array.
subarray(int, int) - Method in class ptolemy.data.ArrayToken
Return the contiguous subarray starting at the specified index and of the specified length.
subarray(ArrayToken, IntToken, IntToken) - Static method in class ptolemy.data.expr.UtilityFunctions
Return the contiguous subarray of the specified array starting at the specified index and of the specified length.
subarrayReturnType(Type, Type, Type) - Static method in class ptolemy.data.expr.UtilityFunctions
Return the return type of the subarray() method, which is the same as the array type.
subgraph(Collection) - Method in class ptolemy.graph.Graph
Return the subgraph induced by a collection of nodes.
subgraph(Collection, Collection) - Method in class ptolemy.graph.Graph
Return the subgraph formed by a subset of nodes and a subset of edges.
subgraphs() - Method in class ptolemy.graph.DirectedGraph
Return a list of disconnected subgraphs of this graph.
subject - Variable in class org.sdm.spa.Email
 
subList(int, int) - Method in class ptolemy.graph.LabeledList
Unsupported method of the List interface.
SubMatrix - Class in ptolemy.actor.lib
This actor extract a submatrix from an input matrix.
SubMatrix(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.SubMatrix
Construct an actor with the given container and name.
submissionTime - Variable in class org.kepler.job.JobStatusInfo
 
submit(JobManager, boolean, String) - Method in class org.kepler.job.Job
Submit a job, called from Job.submit(); boolean overwrite indicates whether old files that exist on the same directory should be removed before staging new files.
submit(Job, boolean, String) - Method in class org.kepler.job.JobManager
Submit a job, called from Job.submit(); boolean overwrite indicates whether old files that exist on the same directory should be removed before staging new files.
submit(Runnable) - Static method in class org.kepler.util.RunnableExecutionQueue
Submit a Runnable for execution.
submitToSwing(Runnable) - Static method in class org.kepler.util.RunnableExecutionQueue
Submit a Runnable for execution in the Swing Thread.
subs - Variable in class org.sdm.spa.ProcessFileRT
Substitutions (array of recordtype {name=string, value=string})
Subscriber - Class in ptolemy.actor.lib
This actor subscribes to tokens on a named channel.
Subscriber(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Subscriber
Construct a subscriber with the specified container and name.
SubscriberPort - Class in ptolemy.actor
This is a specialized input port that subscribes to data sent to it on the specified named channel.
SubscriberPort(ComponentEntity, String) - Constructor for class ptolemy.actor.SubscriberPort
Construct a subscriber port with a containing actor and a name.
subscribers() - Method in class ptolemy.actor.lib.Publisher
Return a Set of Subscribers that are connected to this Publisher.
subscribers() - Method in class ptolemy.actor.PublisherPort
Return a Set of SubscriberPort that are connected to this Publisher.
SubscriptionAggregator - Class in ptolemy.actor.lib
Aggregate data produced by multiple publishers.
SubscriptionAggregator(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.SubscriptionAggregator
Construct a subscriber with the specified container and name.
SubscriptionAggregatorPort - Class in ptolemy.actor
Aggregate data produced by multiple publishers.
SubscriptionAggregatorPort(ComponentEntity, String) - Constructor for class ptolemy.actor.SubscriptionAggregatorPort
Construct a subscriber port with a containing actor and a name.
subsequence(int, int) - Method in class org.sdm.spa.actors.piw.viz.Sequence
Find the subsequence, filling in hyphens for gaps.
SubsetChooser - Class in org.cipres.kepler
 
SubsetChooser(DisplayObject[]) - Constructor for class org.cipres.kepler.SubsetChooser
CONSTRUCTORS
SubsetChooser(DisplayObject[], String) - Constructor for class org.cipres.kepler.SubsetChooser
 
SubsetChooserActor - Class in org.cipres.kepler
This actor reads the input file, generates the entities list, facilitates the user to choose a subset of entities, and stores the selected entities into an output file.
SubsetChooserActor(CompositeEntity, String) - Constructor for class org.cipres.kepler.SubsetChooserActor
Construct SubsetChooserActor source with the given container and name.
SubsetWorkflowOutlineTreeModel - Class in org.kepler.gui
A tree model that can display a subset of a workflow.
SubsetWorkflowOutlineTreeModel(CompositeEntity) - Constructor for class org.kepler.gui.SubsetWorkflowOutlineTreeModel
Create a new SubsetWorkflowOutlineTreeModel with the specified root.
substitute(String, String, String) - Static method in class ptolemy.util.StringUtilities
Replace all occurrences of pattern in the specified string with replacement.
substitute(Action, Action) - Method in class ptolemy.vergil.toolbox.MenuActionFactory
Substitute the old action with the new action, if the old action is added to this factory.
substituteFilePrefix(String, String, String) - Static method in class ptolemy.util.StringUtilities
Perform file prefix substitution.
subtract(Type) - Method in class org.geon.DBConnectionToken.DBConnectionType
Return a new type which represents the type that results from subtracting a token of this type and a token of the given argument type.
subtract(Type) - Method in class org.kepler.gis.data.BoundingBoxToken.BoundingBoxType
 
subtract(Type) - Method in class org.kepler.gis.data.GISToken.GISType
 
subtract(Type) - Method in class org.kepler.gis.data.RasterToken.RasterType
 
subtract(Type) - Method in class org.kepler.gis.data.VectorToken.VectorType
 
subtract(double) - Method in class ptolemy.actor.util.Time
Return a new Time object whose time value is decreased by the given double value.
subtract(Time) - Method in class ptolemy.actor.util.Time
Return a new time object whose time value is decreased by the time value of the specified time object.
subtract(Token) - Method in class ptolemy.data.AbstractConvertibleToken
Return a new token whose value is the value of the argument token subtracted from the value of this token.
subtract(Token) - Method in class ptolemy.data.AbstractNotConvertibleToken
Return a new token whose value is the value of the argument token subtracted from the value of this token.
subtract(Token) - Method in class ptolemy.data.ArrayToken
Subtract from this array token the specified argument.
subtract(Token) - Method in class ptolemy.data.MatrixToken
Return a new token whose value is the value of the argument token subtracted from the value of this token.
subtract(Token) - Method in class ptolemy.data.ScalarToken
Return a new token whose value is the value of the argument token subtracted from the value of this token.
subtract(Token) - Method in class ptolemy.data.Token
Return a new token whose value is the value of the argument token subtracted from the value of this token.
subtract(Type) - Method in class ptolemy.data.type.ActorType
Return a new type which represents the type that results from subtracting a token of this type and a token of the given argument type.
subtract(Type) - Method in class ptolemy.data.type.BaseType
Return a new type which represents the type that results from subtracting a token of this type and a token of the given argument type.
subtract(Type) - Method in class ptolemy.data.type.FixType
Return a new type which represents the type that results from subtracting a token of this type and a token of the given argument type.
subtract(Type) - Method in class ptolemy.data.type.StructuredType
Return a new type which represents the type that results from subtracting a token of this type and a token of the given argument type.
subtract(Type) - Method in class ptolemy.data.type.test.TestToken.TestType
Return a new type which represents the type that results from subtracting a token of this type and a token of the given argument type.
subtract(Type) - Method in interface ptolemy.data.type.Type
Return a new type which represents the type that results from subtracting a token of this type and a token of the given argument type.
subtract(Complex) - Method in class ptolemy.math.Complex
Return a new complex number formed by subtracting the specified complex number from this complex number.
subtract(Complex[], Complex) - Static method in class ptolemy.math.ComplexArrayMath
Return a new array that is constructed by subtracting the complex number z from every element in the given array.
subtract(Complex[], Complex[]) - Static method in class ptolemy.math.ComplexArrayMath
Return a new array that is the element-by-element subtraction of the second array from the first array.
subtract(Complex[][], Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new matrix that is constructed from the argument by subtracting the second matrix from the first one.
subtract(double[], double[]) - Static method in class ptolemy.math.DoubleArrayMath
Return a new array that is the element-by-element difference of the two input arrays, i.e. the first array minus the second array (array1[i] - array2[i]).
subtract(double[][], double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new matrix that is constructed from the argument by subtracting the second matrix from the first one.
subtract(FixPoint) - Method in class ptolemy.math.FixPoint
Return a FixPoint with a value equal to the difference between this FixPoint and the argument.
subtract(FixPoint, Quantization) - Method in class ptolemy.math.FixPoint
Return a FixPoint with a value equal to the difference of this FixPoint and the argument.
subtract(float[], float[]) - Static method in class ptolemy.math.FloatArrayMath
Return a new array that is the element-by-element difference of the two input arrays, i.e. the first array minus the second array (array1[i] - array2[i]).
subtract(float[][], float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Return a new matrix that is constructed from the argument by subtracting the second matrix from the first one.
subtract(Fraction) - Method in class ptolemy.math.Fraction
Subtract the given fraction from this fraction.
subtract(Fraction[], Fraction[]) - Static method in class ptolemy.math.FractionArrayMath
Return a new array that is the element-by-element difference of the two input arrays, i.e. the first array minus the second array (array1[i] - array2[i]).
subtract(Fraction[][], Fraction[][]) - Static method in class ptolemy.math.FractionMatrixMath
Return a new matrix that is constructed from the argument by subtracting the second matrix from the first one.
subtract(int[], int[]) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array that is the element-by-element difference of the two input arrays, i.e. the first array minus the second array (array1[i] - array2[i]).
subtract(int[][], int[][]) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new matrix that is constructed from the argument by subtracting the second matrix from the first one.
subtract(long[], long[]) - Static method in class ptolemy.math.LongArrayMath
Return a new array that is the element-by-element difference of the two input arrays, i.e. the first array minus the second array (array1[i] - array2[i]).
subtract(long[][], long[][]) - Static method in class ptolemy.math.LongMatrixMath
Return a new matrix that is constructed from the argument by subtracting the second matrix from the first one.
subtractPrecision(Precision, Precision) - Static method in class ptolemy.math.FixPoint
Determines the Precision of an subtract operation between two FixPoint values.
subtractReverse(Token) - Method in class ptolemy.data.AbstractConvertibleToken
Return a new token whose value is the value of this token subtracted from the value of the argument token.
subtractReverse(Token) - Method in class ptolemy.data.AbstractNotConvertibleToken
Return a new token whose value is the value of this token subtracted from the value of the argument token.
subtractReverse(Token) - Method in class ptolemy.data.ArrayToken
Subtract this array token from the specified argument.
subtractReverse(Token) - Method in class ptolemy.data.MatrixToken
Return a new token whose value is the value of this token subtracted from the value of the argument token.
subtractReverse(Token) - Method in class ptolemy.data.ScalarToken
Return a new token whose value is the value of the argument token subtracted from the value of this token.
subtractReverse(Token) - Method in class ptolemy.data.Token
Return a new token whose value is the value of this token subtracted from the value of the argument token.
subtractToDouble(Time) - Method in class ptolemy.actor.util.Time
Subtract the specified time from this time and return the result as a double.
subtractUnitsArray(int[], int[]) - Static method in class ptolemy.data.unit.UnitUtilities
Subtract the given unit arrays and return the result in a new array.
succ - Variable in class org.kepler.actor.job.JobRemover
Output: true if removal succeeded, false otherwise This port is an output port of type Integer;
succ - Variable in class org.kepler.actor.job.JobSubmitter
The status of the job submission.
succ - Variable in class org.kepler.actor.ssh.DirectoryCreator
The flag of successful operation.
succ - Variable in class org.kepler.actor.ssh.FileCopier
The flag of successful copy.
succ - Variable in class org.kepler.actor.ssh.FileRemover
The flag of successful removal.
succeeded() - Method in class org.mlc.swing.layout.NewComponentDialog
 
success - Variable in class org.kepler.actor.job.GenericJobLauncher
boolean flag to indicate if job launch was successful
success - Variable in class org.kepler.actor.job.GenericJobReconnect
true if reconnect was successful, false otherwise
SUCCESS - Static variable in interface org.kepler.authentication.AuthenticationListener
 
success - Variable in class org.kepler.hadoop.actor.HDFSRemover
Whether the deletion is success or not.
SUCCESS - Static variable in class org.kepler.provenance.sql.SQLRecording
 
successorEdges(Node, Node) - Method in class ptolemy.graph.DirectedGraph
Return the collection of edges that make a node n2 a successor of a node n1.
successors(Node) - Method in class ptolemy.graph.DirectedGraph
Return all of the successors of a given node in the form of a a collection.
suffix - Variable in class org.nees.CreateUniqueFile
The character suffix to use in generating the file name.
SuggestCompatibleInputAction - Class in org.kepler.sms.gui
 
SuggestCompatibleInputAction(TableauFrame) - Constructor for class org.kepler.sms.gui.SuggestCompatibleInputAction
REQUIRED ***** Constructor
SuggestCompatibleOperation - Class in org.kepler.sms.gui
 
SuggestCompatibleOperation(Frame, NamedObj, int) - Constructor for class org.kepler.sms.gui.SuggestCompatibleOperation
Constructor
SuggestCompatibleOutputAction - Class in org.kepler.sms.gui
 
SuggestCompatibleOutputAction(TableauFrame) - Constructor for class org.kepler.sms.gui.SuggestCompatibleOutputAction
REQUIRED ***** Constructor
suggestedModalModelDirectors() - Method in class ptolemy.actor.Director
Return an array of suggested directors to be used with ModalModel.
suggestedModalModelDirectors() - Method in class ptolemy.actor.sched.FixedPointDirector
Return an array of suggested directors to be used with ModalModel.
suggestedModalModelDirectors() - Method in class ptolemy.domains.continuous.kernel.ContinuousDirector
Return an array of suggested ModalModel directors to use with ContinuousDirector.
suggestedModalModelDirectors() - Method in class ptolemy.domains.ddf.kernel.DDFDirector
Return an array of suggested directors to use with an embedded ModalModel.
suggestedModalModelDirectors() - Method in class ptolemy.domains.de.kernel.DEDirector
Return an array of suggested directors to use with ModalModel.
suggestedModalModelDirectors() - Method in class ptolemy.domains.pn.kernel.PNDirector
Return an array of suggested ModalModel directors to use with PNDirector.
suggestedModalModelDirectors() - Method in class ptolemy.domains.sdf.kernel.SDFDirector
Return an array of suggested ModalModel directors to use with SDFDirector.
suggestedStepSize() - Method in interface ptolemy.actor.continuous.ContinuousStepSizeController
Implementations of this method should return the suggested next step size.
suggestedStepSize() - Method in class ptolemy.domains.continuous.kernel.ContinuousDirector
Return the suggested step size for next integration.
suggestedStepSize() - Method in class ptolemy.domains.continuous.kernel.ContinuousIntegrator
Return the suggested next step size.
suggestedStepSize() - Method in class ptolemy.domains.continuous.kernel.HybridModalDirector
Return the minimum of the step sizes suggested by any actors that were fired in current iteration.
suggestedStepSize() - Method in class ptolemy.domains.continuous.lib.LevelCrossingDetector
Return the maximum Double value.
SuggestSimilarComponentsAction - Class in org.kepler.sms.gui
 
SuggestSimilarComponentsAction(TableauFrame) - Constructor for class org.kepler.sms.gui.SuggestSimilarComponentsAction
REQUIRED ***** Constructor
SuitesList - Class in org.kepler.modulemanager.gui
Created by David Welker.
SuitesList() - Constructor for class org.kepler.modulemanager.gui.SuitesList
 
sum() - Method in class ptolemy.data.expr.PtParser
 
sum(ArrayToken) - Static method in class ptolemy.data.expr.UtilityFunctions
Return the sum of the elements in the specified array.
sum(Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Return the sum of the elements of a matrix.
sum(double[]) - Static method in class ptolemy.math.DoubleArrayMath
Return the sum of the elements in the array.
sum(double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Return the sum of the elements of a matrix.
sum(float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Return the sum of the elements of a matrix.
sum(Fraction[]) - Static method in class ptolemy.math.FractionArrayMath
Return the sum of the elements in the array.
sum(Fraction[][]) - Static method in class ptolemy.math.FractionMatrixMath
Return the sum of the elements of a matrix.
sum(int[][]) - Static method in class ptolemy.math.IntegerMatrixMath
Return the sum of the elements of a matrix.
sum(long[][]) - Static method in class ptolemy.math.LongMatrixMath
Return the sum of the elements of a matrix.
summarizeUnitCategories() - Static method in class ptolemy.data.unit.UnitUtilities
Return a string representation of the UnitSystem.
sumOfElements(double[]) - Static method in class ptolemy.math.DoubleArrayStat
Return the sum of all of the elements in the array.
sumOfSquares(double[]) - Static method in class ptolemy.math.DoubleArrayMath
Return the sum of the squares of all of the elements in the array.
sumOfSquares(float[]) - Static method in class ptolemy.math.FloatArrayMath
Return the sum of the squares of all of the elements in the array.
sumOfSquares(int[]) - Static method in class ptolemy.math.IntegerArrayMath
Return the sum of the squares of all of the elements in the array.
sumOfSquares(long[]) - Static method in class ptolemy.math.LongArrayMath
Return the sum of the squares of all of the elements in the array.
sumReturnType(Type) - Static method in class ptolemy.data.expr.UtilityFunctions
Return the (exact) return type of the sum function above.
SumValuesCoGroup - Class in org.kepler.stratosphere.stub
A CoGroupStub that sums the values in both inputs.
SumValuesCoGroup() - Constructor for class org.kepler.stratosphere.stub.SumValuesCoGroup
 
SuperClassPathFinderDoclet - Class in org.kepler.kar
A doclet to find the paths of all super classes for an object.
SuperClassPathFinderDoclet() - Constructor for class org.kepler.kar.SuperClassPathFinderDoclet
 
SuperdenseDependency - Class in ptolemy.actor.util
This dependency represents causal relationships that have a real value and a superdense time index.
SuperdenseTime - Class in ptolemy.actor.util
This class defines the structure of superdense time used in domains having time involved in computation.
SuperdenseTime(Time, int) - Constructor for class ptolemy.actor.util.SuperdenseTime
Construct a superdense time object with the specified timestamp and index.
SuperdenseTimeDirector - Interface in ptolemy.actor
This is an interface for directors that use a superdense model of time.
SuperdenseTimeTest - Class in ptolemy.domains.de.test
A test actor illustrating a potential bug in DE in its handling of superdense time.
SuperdenseTimeTest(CompositeEntity, String) - Constructor for class ptolemy.domains.de.test.SuperdenseTimeTest
Create an instance of the actor.
supportMultirateFiring() - Method in class ptolemy.actor.Director
Return a boolean to indicate whether a ModalModel under control of this director supports multirate firing.
supportMultirateFiring() - Method in class ptolemy.domains.ddf.kernel.DDFDirector
Return true to indicate that a ModalModel under control of this director supports multirate firing.
supportMultirateFiring() - Method in class ptolemy.domains.modal.kernel.MultirateFSMDirector
Return a boolean to indicate whether a ModalModel under control of this director supports multirate firing.
supportMultirateFiring() - Method in class ptolemy.domains.pn.kernel.PNDirector
Return true to indicate that a ModalModel under control of this director supports multirate firing.
supportMultirateFiring() - Method in class ptolemy.domains.sdf.kernel.SDFDirector
Return true to indicate that a ModalModel under control of this director supports multirate firing.
suppressBlankLines - Variable in class ptolemy.actor.lib.gui.Display
The flag indicating whether this display actor suppress blank lines.
suppressEmptyDF - Variable in class org.kepler.spark.mllib.RemoveRowsWithNulls
Option to suppress empty data frame after dropna
SuppressSimultaneousEvents - Class in ptolemy.domains.de.lib
Output the first token received on the input port, and suppress any other inputs received with the same physical time index.
SuppressSimultaneousEvents(CompositeEntity, String) - Constructor for class ptolemy.domains.de.lib.SuppressSimultaneousEvents
Construct an actor with the given container and name.
suspend() - Method in class ptolemy.actor.Director
Suspend the actor at the specified time.
SVG_BATIK_RENDERING - Static variable in class org.kepler.gui.StaticGUIResources
 
SVG_DIVA_RENDERING - Static variable in class org.kepler.gui.StaticGUIResources
 
SVG_ICON_ATTRIB_NAME - Static variable in class org.kepler.icon.ComponentEntityConfig
attribute name for attribute added to actors to describe (batik-renderable) SVG image file location
SVG_RENDERING_NOT_SET - Static variable in class org.kepler.gui.StaticGUIResources
 
SVGConcat - Class in org.geon
Concatanate several SVG files to a single file.
SVGConcat(CompositeEntity, String) - Constructor for class org.geon.SVGConcat
Construct an actor with the given container and name.
svgFile - Variable in class org.geon.AddPointToSVG
An SVG inupt file port.
svgFileParam - Variable in class org.geon.AddPointToSVG
An SVG input file name or URL.
svgFiles - Variable in class org.geon.SVGConcat
Array of SVG input files.
SVGIcon - Class in ptolemy.vergil.icon
This class is intended to eventually replace XMLIcon, however, the current version doesn't work very well, so it isn't used.
SVGIcon(Workspace, String) - Constructor for class ptolemy.vergil.icon.SVGIcon
Construct an icon in the specified workspace and name.
SVGIcon(NamedObj, String) - Constructor for class ptolemy.vergil.icon.SVGIcon
Create a new icon with the given name in the given container.
svgOutFile - Variable in class org.geon.AddPointToSVG
An SVG output file name or URL.
svgOutputFile - Variable in class org.geon.AddPointToSVG
An SVG output file port.
SVGToPolygon - Class in org.geon
This actor converts an SVG file into polygon objects.
SVGToPolygon(CompositeEntity, String) - Constructor for class org.geon.SVGToPolygon
Construct an actor with the given container and name.
SVMApply - Class in org.kepler.spark.mllib
Apply a trained support vector machine model to a data set.
SVMApply(CompositeEntity, String) - Constructor for class org.kepler.spark.mllib.SVMApply
 
SVMKModel - Class in org.kepler.spark.mllib
Train an SVM model in Spark MLlib.
SVMKModel(CompositeEntity, String) - Constructor for class org.kepler.spark.mllib.SVMKModel
 
Switch - Class in ptolemy.actor.lib
A polymorphic switch, which routes inputs to specified output channels.
Switch(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Switch
Construct an actor in the specified container with the specified name.
SwitchTo(int) - Method in class ptolemy.data.expr.MatrixParserTokenManager
Switch to specified lex state.
SwitchTo(int) - Method in class ptolemy.data.expr.PtParserTokenManager
Switch to specified lex state.
SwitchTo(int) - Method in class ptolemy.moml.unit.UParserTokenManager
Switch to specified lex state.
symbolInterval - Variable in class ptolemy.domains.sdf.lib.RaisedCosine
The symbol interval, which is the number of samples to the first zero crossing on each side of the main lobe.
symmetricOutput - Variable in class ptolemy.domains.sdf.lib.Autocorrelation
If true, then the output from each firing will have 2*numberOfLags + 1 samples (an odd number) whose values are symmetric about the midpoint.
synchronizeDB() - Method in class org.kepler.objectmanager.cache.LocalRepositoryManager
Synchronize the KAR_LOCAL_REPOS table with the _localRepositories private variable list.
synchronizeKARCacheWithLocalRepositories() - Method in class org.kepler.kar.KARCacheManager
Update the KAR cache tables to reflect the kar files on disk.
Synchronizer - Class in ptolemy.actor.lib
This actor implements a token synchronizer.
Synchronizer(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Synchronizer
Construct an actor in the specified container with the specified name.
synchronizeToRealTime - Variable in class ptolemy.actor.lib.hoc.ThreadedComposite
If set to true, the inside thread stalls until real time matches the time stamps of input events or pure events for each firing.
SynchronizeToRealTime - Class in ptolemy.actor.lib
Attribute that regulates the passage of time to wait for real time to catch up.
SynchronizeToRealTime(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.SynchronizeToRealTime
Construct an instance of the attribute.
synchronizeToRealTime - Variable in class ptolemy.actor.sched.FixedPointDirector
Specify whether the execution should synchronize to the real time.
synchronizeToRealTime - Variable in class ptolemy.domains.de.kernel.DEDirector
Specify whether the execution should synchronize to the real time.
synchronizeToRealTime - Variable in class ptolemy.domains.sdf.kernel.SDFDirector
Specify whether the execution should synchronize to the real time.
SYNCHRONOUS_AG - Static variable in class ptolemy.chic.ChicInvoker
Indicate use of the Synchronous A/G compiler.
SyncOnTerminator - Class in org.sdm.spa
Pass on a stream of tokens except for a specific element (termination) and emit the termination when it is found in the stream NumberOfOccurencesth times.
SyncOnTerminator(CompositeEntity, String) - Constructor for class org.sdm.spa.SyncOnTerminator
Construct an actor with the given container and name.
synonymousNames - Variable in class org.ecoinformatics.seek.taxon.GetTaxa
 
syntaxError(String) - Method in class org.json.JSONTokener
Make a JSONException to signal a syntax error.
syntaxStyle - Variable in class ptolemy.actor.gui.TextEditorTableau.Factory
The style of the text to be edited.
syntaxStyle - Variable in class ptolemy.vergil.toolbox.TextEditorConfigureFactory
The style of the text to be edited.
syntaxStyle - Variable in class ptolemy.vergil.toolbox.TextEditorTableauFactory
The style of the text to be edited.
SyntaxTextEditor - Class in ptolemy.actor.gui.syntax
A top-level window containing a text editor or viewer that understands the syntax of various languages.
SyntaxTextEditor() - Constructor for class ptolemy.actor.gui.syntax.SyntaxTextEditor
Construct an empty text editor with no name.
SyntaxTextEditor(String) - Constructor for class ptolemy.actor.gui.syntax.SyntaxTextEditor
Construct an empty text editor with the specified title.
SyntaxTextEditor(String, Document) - Constructor for class ptolemy.actor.gui.syntax.SyntaxTextEditor
Construct an empty text editor with the specified title and document.
SyntaxTextEditor(String, Document, Placeable) - Constructor for class ptolemy.actor.gui.syntax.SyntaxTextEditor
Construct an empty text editor with the specified title and document and associated placeable.
SyntaxTextEditor(String, Document, PortablePlaceable) - Constructor for class ptolemy.actor.gui.syntax.SyntaxTextEditor
Construct an empty text editor with the specified title and document and associated PortablePlaceable.
SyntaxTextEditorForStringAttributes - Class in ptolemy.actor.gui.syntax
A text editor to edit a specified string attribute using a syntax-directed editor.
SyntaxTextEditorForStringAttributes(TextEditorFactory, Attribute, int, int, String, Document) - Constructor for class ptolemy.actor.gui.syntax.SyntaxTextEditorForStringAttributes
Create a annotation text editor for the specified attribute.
system - Variable in class org.ecoinformatics.seek.ecogrid.quicksearch.SearchQuery
 
systemPowerIO - Variable in class org.kepler.data.conversion.binary.EnsembleActor
 
SystemPropertyLoader - Class in org.kepler.loader
Created by David Welker.
SystemPropertyLoader() - Constructor for class org.kepler.loader.SystemPropertyLoader
 

T

t - Variable in class ptolemy.domains.continuous.lib.DifferentialSystem
The value of current time.
TAB - Static variable in class org.camera.service.ServiceUtils
 
TAB - Static variable in class org.kepler.actor.rest.ServiceUtils
 
tab - Static variable in class org.kepler.kar.karxml.KarXmlGenerator
 
TABBED_DIALOG_BORDER - Static variable in class com.jgoodies.forms.factories.Borders
A standardized Border that describes the border around a dialog content that uses tabs.
TabbedActorController - Class in org.kepler.gui.controller
An actor controller that provides an action to open actors in a tab.
TabbedActorController(GraphController) - Constructor for class org.kepler.gui.controller.TabbedActorController
 
TabbedActorController(GraphController, AttributeController.Access) - Constructor for class org.kepler.gui.controller.TabbedActorController
 
TabbedCompositeTabComponent - Class in org.kepler.gui
A Swing component on the tabs of composite actors.
TabbedCompositeTabComponent(NamedObj, Tableau) - Constructor for class org.kepler.gui.TabbedCompositeTabComponent
 
TabbedDialog - Class in org.kepler.gui
Base class for Actor, Director and Workflow dialogs, containing a JTabbedPane to which any number of tabs may be added at runtime.
TabbedDialog(TableauFrame, String, boolean) - Constructor for class org.kepler.gui.TabbedDialog
Construct an instance of this TabbedDialog, with the specified owner Frame and title string.
TabbedKeplerController() - Constructor for class org.kepler.gui.frame.TabbedKeplerGraphFrame.TabbedKeplerController
 
TabbedKeplerGraphFrame - Class in org.kepler.gui.frame
This is a graph editor frame that uses a tabbed pane to display multiple composite actors.
TabbedKeplerGraphFrame(CompositeActor, Tableau) - Constructor for class org.kepler.gui.frame.TabbedKeplerGraphFrame
Construct a frame associated with the specified composite actor.
TabbedKeplerGraphFrame(CompositeActor, Tableau, LibraryAttribute) - Constructor for class org.kepler.gui.frame.TabbedKeplerGraphFrame
Construct a frame associated with the specified composite actor.
TabbedKeplerGraphFrame.TabbedKeplerController - Class in org.kepler.gui.frame
Specialized graph controller that handles multiple graph models.
TabbedKeplerGraphFrameEvent - Class in org.kepler.gui.frame
An event that represents a state change in TabbedKeplerGraphFrame.
TabbedKeplerGraphFrameEvent(Component, TabbedKeplerGraphFrame, NamedObj) - Constructor for class org.kepler.gui.frame.TabbedKeplerGraphFrameEvent
Construct a new MultiCompositeStateChangeEvent event.
TabbedKeplerGraphTableau - Class in org.kepler.gui.frame
An editor tableau for multiple composite actors.
TabbedKeplerGraphTableau(PtolemyEffigy, String) - Constructor for class org.kepler.gui.frame.TabbedKeplerGraphTableau
Create a new TabbedKeplerGraphTableau with the specified container and name.
TabbedKeplerGraphTableau(PtolemyEffigy, String, LibraryAttribute) - Constructor for class org.kepler.gui.frame.TabbedKeplerGraphTableau
Create a new TabbedKeplerGraphTableau with the specified container, name, and default library.
TabbedKeplerGraphTableau.Factory - Class in org.kepler.gui.frame
A factory that creates graph editing tableaux for Ptolemy models.
TabbedLookInsideAction - Class in org.kepler.gui
An action to open a composite actor in a tab.
TabbedLookInsideAction(TableauFrame) - Constructor for class org.kepler.gui.TabbedLookInsideAction
Create a new TabbedLookInsideAction object with the given frame as it's container.
TabbedLookInsideAction(String) - Constructor for class org.kepler.gui.TabbedLookInsideAction
Create a new TabbedLookInsideAction object with the given string as its menu action label.
tabEvent(TableauFrame, ActionEvent) - Method in class org.kepler.gui.TabManager
 
tabExists(TableauFrame, String) - Method in class org.kepler.gui.TabManager
 
Table - Class in org.kepler.util.sql
A generic representation of an SQL table.
table - Variable in class org.sdm.spa.DatabaseWriter
Name of table.
table - Variable in class ptolemy.actor.gui.ArrayOfRecordsPane
The table representing the matrix.
table - Variable in class ptolemy.actor.gui.MatrixPane
The table representing the matrix.
table - Variable in class ptolemy.actor.lib.comm.Slicer
The code table.
table - Variable in class ptolemy.actor.lib.LookupTable
The table array that we look up elements in.
table - Variable in class ptolemy.domains.sdf.lib.LineCoder
The code table.
Table.ColumnConstraint - Class in org.kepler.util.sql
 
Table.ForeignKey - Class in org.kepler.util.sql
A class for foreign keys.
Table.IndexType - Enum in org.kepler.util.sql
Index types.
TABLE_GRID_COLOR - Static variable in class org.kepler.workflowrunmanager.WRMDefaults
 
tableau - Variable in class org.sdm.spa.TextualInteractionShell
 
Tableau - Class in ptolemy.actor.gui
A tableau is a visual representation of a Ptolemy II model in a top-level window.
Tableau(Workspace) - Constructor for class ptolemy.actor.gui.Tableau
Construct a tableau in the specified workspace.
Tableau(CompositeEntity, String) - Constructor for class ptolemy.actor.gui.Tableau
Construct a tableau with the given name and container.
TableauFactory - Class in ptolemy.actor.gui
This class is an attribute that creates a tableau to view a specified effigy.
TableauFactory(NamedObj, String) - Constructor for class ptolemy.actor.gui.TableauFactory
Create a factory with the given name and container.
TableauFrame - Class in ptolemy.actor.gui
This is a top-level window associated with a tableau that has a menubar and status bar.
TableauFrame() - Constructor for class ptolemy.actor.gui.TableauFrame
Construct an empty top-level frame.
TableauFrame(Tableau) - Constructor for class ptolemy.actor.gui.TableauFrame
Construct an empty top-level frame managed by the specified tableau and the default status bar.
TableauFrame(Tableau, StatusBar) - Constructor for class ptolemy.actor.gui.TableauFrame
Construct an empty top-level frame managed by the specified tableau with the specified status bar.
TableauFrame(Tableau, StatusBar, Placeable) - Constructor for class ptolemy.actor.gui.TableauFrame
Construct an empty top-level frame managed by the specified tableau with the specified status bar and associated Placeable object.
TableauFrame(Tableau, StatusBar, PortablePlaceable) - Constructor for class ptolemy.actor.gui.TableauFrame
Construct an empty top-level frame managed by the specified tableau with the specified status bar and associated PortablePlaceable object.
TableauFrame.MenuItemListener - Class in ptolemy.actor.gui
A Listener for menu items.
TableButtonPanel - Class in org.kepler.plotting
Created by IntelliJ IDEA.
TableButtonPanel(PlotEditor) - Constructor for class org.kepler.plotting.TableButtonPanel
 
tableChanged(TableModelEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBTableFrame
If the Model changes make sure everything is redrawn
tableChanged(TableModelEvent) - Method in class org.ecoinformatics.seek.querybuilder.QBApp
 
tableChanged(TableModelEvent) - Method in class org.kepler.objectmanager.data.db.QBEditor
React to notification that an attribute or set of attributes changed.
TABLEENTITY - Static variable in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200Parser
 
TABLEENTITY - Static variable in class org.kepler.objectmanager.data.db.Entity
static variable for table type
tableExists(String) - Method in class org.kepler.util.sql.DatabaseType
See if a table name exists in the database.
tableExists(Table) - Method in class org.kepler.util.sql.DatabaseType
See if a table exists in the database.
TableIcon - Class in ptolemy.vergil.icon
An icon that displays the value of a variable of the container in a table.
TableIcon(NamedObj, String) - Constructor for class ptolemy.vergil.icon.TableIcon
Create a new icon with the given name in the given container.
tableName - Variable in class org.kepler.actor.database.DatabaseTableCreator
 
tableNameParam - Variable in class org.kepler.actor.database.DatabaseTableCreator
The name of the table which will be created
tableNames - Variable in class org.geon.LidarUtilities
 
tableNames() - Method in class org.kepler.util.sql.Schema
Get the names of all tables.
TableOfContentsHandler - Class in org.kepler.webview.server.handler
A HTTP Server handler that generates a table of contents for the WebViewServer showing all the available workflows.
TableOfContentsHandler(WebViewServer) - Constructor for class org.kepler.webview.server.handler.TableOfContentsHandler
 
tables() - Method in class org.kepler.util.sql.Schema
Get a list of tables.
TableSchemaSelectionListener - Class in org.ecoinformatics.seek.querybuilder
In QueryBuilder GUI, there is a JComboBox for selecting table schema.
TableSchemaSelectionListener(QBSplitPaneStandard) - Constructor for class org.ecoinformatics.seek.querybuilder.TableSchemaSelectionListener
Constructor with dataModel and table view
TableTableCellEditor - Class in org.ecoinformatics.seek.ecogrid
Editor lass for table as a table cell
TableTableCellEditor(JTable, JCheckBox, Vector) - Constructor for class org.ecoinformatics.seek.ecogrid.TableTableCellEditor
Controctor
TableTableCellRenderer - Class in org.ecoinformatics.seek.ecogrid
This class will render a table cell as another table.
TableTableCellRenderer(JTable, Vector) - Constructor for class org.ecoinformatics.seek.ecogrid.TableTableCellRenderer
Constructor with a vector(tableModel)
tableType - Variable in class org.kepler.actor.io.ArrayOfRecordsWriter
The type of table output.
TabManager - Class in org.kepler.gui
This singleton class can be used to hold references to java components that implement the TabPane interface so they can be accessed and controlled from anywhere.
TabManager() - Constructor for class org.kepler.gui.TabManager
Constructor.
TABNAME - Static variable in class org.kepler.workflowscheduler.gui.configurationwizard.WorkflowRunEnginePreferenceTab
 
TABNAME - Static variable in class org.kepler.workflowscheduler.gui.configurationwizard.WorkflowSchedulerPreferenceTab
 
TabPane - Interface in org.kepler.gui
This interface is to be implemented by anyone wanting to add a tab to the Kepler.
TabPaneActionListener - Interface in org.kepler.gui
 
TabPaneExtensionExample - Class in org.kepler.gui
This is an example template for extending the TabPane extension in Kepler.
TabPaneExtensionExample() - Constructor for class org.kepler.gui.TabPaneExtensionExample
 
TabPaneExtensionExample.Factory - Class in org.kepler.gui
A factory that creates a TabPane.
TabPaneFactory - Class in org.kepler.gui
This class is an attribute that creates a LibraryPaneTab for the TabbedLibraryPane.
TabPaneFactory(NamedObj, String) - Constructor for class org.kepler.gui.TabPaneFactory
Create a factory with the given name and container.
tabPanePadding - Static variable in class org.kepler.gui.TabbedDialog
dims of paddign inside tab panes
tabSize - Variable in class ptolemy.data.expr.SimpleCharStream
 
tabSize - Variable in class ptolemy.moml.unit.SimpleCharStream
 
tag - Variable in class org.kepler.hadoop.io.TaggedValue
 
tag - Variable in class org.kepler.tagging.TagReloadType
 
TAG_ADDED - Static variable in class org.kepler.workflowrunmanager.WorkflowRunManagerEvent
 
TAG_REMOVED - Static variable in class org.kepler.workflowrunmanager.WorkflowRunManagerEvent
 
TAG_TYPE_RUN - Static variable in class org.kepler.util.WorkflowRun
 
TAG_TYPE_WORKFLOW - Static variable in class org.kepler.util.WorkflowRun
 
TagAddAction - Class in org.kepler.tagging.gui
An action that adds a tag
TagAddAction(KeplerGraphFrame, TagBarInsertionUI) - Constructor for class org.kepler.tagging.gui.TagAddAction
 
tagAdded(TagEvent) - Method in class org.kepler.provenance.ProvenanceRecorder
 
tagAdded(TagEvent) - Method in class org.kepler.provenance.Recording
 
tagAdded(TagEvent) - Method in class org.kepler.provenance.sql.SQLRecordingV8
A tag was added, insert it
tagAdded(TagEvent) - Method in class org.kepler.provenance.TextFileRecording
A tag was added.
tagAdded(TagEvent) - Method in interface org.kepler.tagging.TagEventListener
 
tagAdded(TagEvent) - Method in class org.kepler.workflowrunmanager.WorkflowRunManagerRecording
update WRM table after a run tag has been added.
TagBarDisplayUI - Class in org.kepler.tagging.gui
 
TagBarDisplayUI(TableauFrame, ExistingTagsPanel) - Constructor for class org.kepler.tagging.gui.TagBarDisplayUI
 
TagBarInsertionUI - Class in org.kepler.tagging.gui
 
TagBarInsertionUI(ExistingTagsPanel) - Constructor for class org.kepler.tagging.gui.TagBarInsertionUI
 
TagBarInsertionUI(TableauFrame) - Constructor for class org.kepler.tagging.gui.TagBarInsertionUI
 
TagBarUI - Class in org.kepler.tagging.gui
Created by IntelliJ IDEA.
TagBarUI(TagBarDisplayUI, TagBarInsertionUI) - Constructor for class org.kepler.tagging.gui.TagBarUI
 
TagBarUI(KeplerGraphFrame) - Constructor for class org.kepler.tagging.gui.TagBarUI
 
TagCache - Class in org.kepler.tagging
Created by IntelliJ IDEA.
TagEvent - Class in org.kepler.tagging
Created by IntelliJ IDEA.
TagEvent(NamedObj, NamedOntClass, boolean) - Constructor for class org.kepler.tagging.TagEvent
 
TagEventListener - Interface in org.kepler.tagging
Created by IntelliJ IDEA.
TaggedBytesWritable - Class in org.kepler.hadoop.io
This class provides a data structure for tagged BytesWritable.
TaggedBytesWritable() - Constructor for class org.kepler.hadoop.io.TaggedBytesWritable
 
TaggedBytesWritable(boolean, Writable) - Constructor for class org.kepler.hadoop.io.TaggedBytesWritable
 
TaggedDoubleWritable - Class in org.kepler.hadoop.io
This class provides a data structure for tagged DoubleWritable.
TaggedDoubleWritable() - Constructor for class org.kepler.hadoop.io.TaggedDoubleWritable
 
TaggedDoubleWritable(boolean, Writable) - Constructor for class org.kepler.hadoop.io.TaggedDoubleWritable
 
TaggedIntWritable - Class in org.kepler.hadoop.io
This class provides a data structure for tagged IntWritable.
TaggedIntWritable() - Constructor for class org.kepler.hadoop.io.TaggedIntWritable
 
TaggedIntWritable(boolean, Writable) - Constructor for class org.kepler.hadoop.io.TaggedIntWritable
 
TaggedLongWritable - Class in org.kepler.hadoop.io
This class provides a data structure for tagged LongWritable.
TaggedLongWritable() - Constructor for class org.kepler.hadoop.io.TaggedLongWritable
 
TaggedLongWritable(boolean, Writable) - Constructor for class org.kepler.hadoop.io.TaggedLongWritable
 
TaggedNullWritable - Class in org.kepler.hadoop.io
This class provides a data structure for tagged NullWritable.
TaggedNullWritable() - Constructor for class org.kepler.hadoop.io.TaggedNullWritable
 
TaggedNullWritable(boolean, Writable) - Constructor for class org.kepler.hadoop.io.TaggedNullWritable
 
TaggedObjectWritable - Class in org.kepler.hadoop.io
This class provides a data structure for tagged ObjectWritable.
TaggedObjectWritable() - Constructor for class org.kepler.hadoop.io.TaggedObjectWritable
 
TaggedObjectWritable(boolean, Writable) - Constructor for class org.kepler.hadoop.io.TaggedObjectWritable
 
TaggedText - Class in org.kepler.hadoop.io
This class provides a data structure for tagged Text.
TaggedText() - Constructor for class org.kepler.hadoop.io.TaggedText
 
TaggedText(boolean, Writable) - Constructor for class org.kepler.hadoop.io.TaggedText
 
TaggedValue - Class in org.kepler.hadoop.io
This abstract class provides a data structure for tagged Value.
TaggedValue() - Constructor for class org.kepler.hadoop.io.TaggedValue
 
TaggedValue(BooleanWritable, Writable) - Constructor for class org.kepler.hadoop.io.TaggedValue
 
TaggedValue(boolean, Writable) - Constructor for class org.kepler.hadoop.io.TaggedValue
 
Tagging - Class in org.kepler.tagging
Tagging helper methods
Tagging() - Constructor for class org.kepler.tagging.Tagging
 
TaggingContext - Enum in org.kepler.tagging
Created by IntelliJ IDEA.
TaggingContextManager - Class in org.kepler.tagging
Created by IntelliJ IDEA.
TaggingPanel - Class in org.kepler.tagging.gui
Created by IntelliJ IDEA.
TaggingPanel() - Constructor for class org.kepler.tagging.gui.TaggingPanel
 
TagManagerAction - Class in org.kepler.tagging
Created by IntelliJ IDEA.
TagManagerAction(TableauFrame) - Constructor for class org.kepler.tagging.TagManagerAction
 
TagManagerCBItem() - Constructor for class org.kepler.tagging.gui.CBItems.TagManagerCBItem
 
TagManagerUI - Class in org.kepler.tagging.gui
 
TagManagerUI(JFrame) - Constructor for class org.kepler.tagging.gui.TagManagerUI
 
TagManagerUITester - Class in org.kepler.tagging.gui
 
TagManagerUITester() - Constructor for class org.kepler.tagging.gui.TagManagerUITester
 
TagReloadType - Class in org.kepler.tagging
Created by IntelliJ IDEA.
TagReloadType.SearchStringChange - Class in org.kepler.tagging
 
TagReloadType.TagCacheChange - Class in org.kepler.tagging
TAG_ADDED removes the tag from the auto-completions and adds it to the tag bar.
TagReloadType.Type - Enum in org.kepler.tagging
 
tagRemoved(TagEvent) - Method in class org.kepler.provenance.ProvenanceRecorder
 
tagRemoved(TagEvent) - Method in class org.kepler.provenance.Recording
 
tagRemoved(TagEvent) - Method in class org.kepler.provenance.sql.SQLRecordingV8
A tag was removed.
tagRemoved(TagEvent) - Method in class org.kepler.provenance.TextFileRecording
A tag was removed.
tagRemoved(TagEvent) - Method in interface org.kepler.tagging.TagEventListener
 
tagRemoved(TagEvent) - Method in class org.kepler.workflowrunmanager.WorkflowRunManagerRecording
update WRM table after a run tag has been removed.
TAGS - Static variable in class org.kepler.workflowrunmanager.WRMDefaults
 
TAGS_COLUMN_WIDTH - Static variable in class org.kepler.workflowrunmanager.WRMDefaults
 
tagsChanged(NamedObj, List<NamedOntClass>, List<NamedOntClass>) - Method in interface org.kepler.sms.SMSTagChangeListener
 
tagSplit(String) - Static method in class org.kepler.sms.Util
 
TagTransition - Class in org.kepler.tagging
Created by IntelliJ IDEA.
TagTransition(Vector<Object>, Vector<Object>, int, int, boolean, boolean) - Constructor for class org.kepler.tagging.TagTransition
 
TagTransition(Vector<Object>, Vector<Object>, Range, boolean, boolean) - Constructor for class org.kepler.tagging.TagTransition
If preTransition is true, it means that the range we are giving is of the changes given from the perspective of the original tags.
take() - Method in class ptolemy.actor.util.CalendarQueue
Remove the smallest entry and return it.
take() - Method in class ptolemy.actor.util.FIFOQueue
Remove the oldest object from the queue and return it.
take() - Method in class ptolemy.actor.util.TotallyOrderedSet
Deprecated.
Use removeFirst() instead.
take() - Method in class ptolemy.domains.de.kernel.DECQEventQueue
Dequeue the earliest DE event in this event queue.
take() - Method in interface ptolemy.domains.de.kernel.DEEventQueue
Return the earliest DE event in this event queue.
take() - Method in class ptolemy.domains.sdf.kernel.ArrayFIFOQueue
Remove the oldest object from the queue and return it.
takeArray(Object[]) - Method in class ptolemy.domains.sdf.kernel.ArrayFIFOQueue
Remove the count oldest objects from the queue and return them.
takeArray(Object[], int) - Method in class ptolemy.domains.sdf.kernel.ArrayFIFOQueue
Remove the count oldest objects from the queue and return them.
tan() - Method in class ptolemy.math.Complex
Return a new complex number with value equal to the tangent of this complex number.
tan(Complex) - Static method in class ptolemy.math.Complex
Return a new complex number with value equal to the tangent of the given complex number.
tanh() - Method in class ptolemy.math.Complex
Return a new complex number with value equal to the hyperbolic tangent of this complex number.
tanh(Complex) - Static method in class ptolemy.math.Complex
Return a new complex number with value equal to the hyperbolic tangent of the given complex number.
tanh(double) - Static method in class ptolemy.math.ExtendedMath
Return the hyperbolic tangent of the argument.
taps - Variable in class ptolemy.domains.sdf.lib.FIR
The taps of the filter.
tapValues - Variable in class ptolemy.domains.sdf.lib.LMSAdaptive
The output of tap values.
TAR - Static variable in class org.kepler.objectmanager.data.db.Entity
 
target - Variable in class org.kepler.actor.gsissh.ExecGsisshCmd
Target in user@host:port format.
target - Variable in class org.kepler.actor.io.SshDirectoryList
The machine to be used at job submission.
target - Variable in class org.kepler.actor.io.SshDirectoryList_v1_1
The machine to be used at job submission.
target - Variable in class org.kepler.actor.job.GenericJobLauncher
The machine to be used at job submission.
target - Variable in class org.kepler.actor.job.GenericJobReconnect
The machine to be used at job submission.
target - Variable in class org.kepler.actor.job.JobManager
The machine to be used at job submission.
target - Variable in class org.kepler.actor.ssh.DirectoryCreator
The machine to be used at job submission.
target - Variable in class org.kepler.actor.ssh.ExecuteCmd
Target in user@host:port format.
target - Variable in class org.kepler.actor.ssh.FileCopier
Target in user@host:path format.
target - Variable in class org.kepler.actor.ssh.FileRemover
Target in user@host:port format.
target - Variable in class org.kepler.actor.ssh.SshSession
Target in user@host:port format.
target_out - Variable in class org.kepler.actor.ssh.SshSession
String output: same as input target.
targetHDFSPath - Variable in class org.kepler.hadoop.actor.HDFSLoader
The target file path on HDFS to which to write.
targetHDFSPath - Variable in class org.kepler.hadoop.actor.HDFSWriter
The file path to which to write.
targetLevel - Variable in class org.ecoinformatics.seek.taxon.GetTaxa
 
targetLocalDir - Variable in class org.kepler.hadoop.actor.HDFSUnLoader
The target file path on HDFS to which to write.
targets - Variable in class org.kepler.tagging.TagReloadType
 
taskId - Variable in class org.kepler.actor.job.JobStatus
Task ID : this is the task id for the status code
TaskParallelJobStatusInfo - Class in org.kepler.job
Status info struct for the job class
TaskParallelJobStatusInfo(JobStatusInfo) - Constructor for class org.kepler.job.TaskParallelJobStatusInfo
 
TaskParallelJobStatusInfo() - Constructor for class org.kepler.job.TaskParallelJobStatusInfo
 
tasks_per_update - Variable in class org.eol.WmsdActor
 
taskStatusCode - Variable in class org.kepler.actor.job.JobStatus
Task status code : for some error during execution or if jobID is invalid 1 : not in queue: i.e. already finished if it had ever been there (this is good news!)
taskStatusCodes - Variable in class org.kepler.job.TaskParallelJobStatusInfo
 
tau - Variable in class ptolemy.actor.lib.colt.ColtExponentialPower
tau.
taxaName - Variable in class org.ecoinformatics.seek.taxon.GetTaxa
 
TclShellEffigy - Class in ptolemy.actor.gui.ptjacl
A representative of an Tcl expression shell.
TclShellEffigy(Workspace) - Constructor for class ptolemy.actor.gui.ptjacl.TclShellEffigy
Create a new effigy in the specified workspace with an empty string for its name.
TclShellEffigy(CompositeEntity, String) - Constructor for class ptolemy.actor.gui.ptjacl.TclShellEffigy
Create a new effigy in the given container with the given name.
TclShellEffigy.ShellFactory - Class in ptolemy.actor.gui.ptjacl
A factory for creating new Ptolemy effigies.
TclShellFrame(TclShellTableau) - Constructor for class ptolemy.actor.gui.ptjacl.TclShellTableau.TclShellFrame
Construct a frame to display the TclShell window.
TclShellTableau - Class in ptolemy.actor.gui.ptjacl
A tableau that provides a Tcl Shell for interacting with Ptjacl, a 100% Java implementation of Tcl.
TclShellTableau(TclShellEffigy, String) - Constructor for class ptolemy.actor.gui.ptjacl.TclShellTableau
Create a new tableau.
TclShellTableau.Factory - Class in ptolemy.actor.gui.ptjacl
A factory that creates a control panel to display a Tcl Shell.
TclShellTableau.TclShellFrame - Class in ptolemy.actor.gui.ptjacl
The frame that is created by an instance of TclShellTableau.
TclTests - Class in ptolemy.util.test.junit
Run the Tcl tests under JUnit.
TclTests() - Constructor for class ptolemy.util.test.junit.TclTests
 
TempActor - Class in org.geon
Produce a constant output once.
TempActor(CompositeEntity, String) - Constructor for class org.geon.TempActor
Construct an actor with the given container and name.
tempIO - Variable in class org.kepler.data.conversion.binary.EnsembleActor
 
template - Variable in class ptolemy.actor.lib.xslt.XMLInclusion
The template that specifies how the XML tokens will be combined.
TemporaryVariable - Class in ptolemy.data.expr
This is identical to a Variable except that creating it does not increment the workspace version.
TemporaryVariable(NamedObj, String) - Constructor for class ptolemy.data.expr.TemporaryVariable
Construct a variable with the given name as an attribute of the given container.
term() - Method in class ptolemy.data.expr.PtParser
 
terminate() - Method in class org.kepler.scriptengine.ScriptEngineActor
Invoke the terminate() method in the script.
terminate() - Method in class ptolemy.actor.AtomicActor
Terminate execution immediately.
terminate() - Method in class ptolemy.actor.CompositeActor
If this is an opaque CompositeActor, then look to our director for help.
terminate() - Method in class ptolemy.actor.Director
Terminate any currently executing model with extreme prejudice.
terminate() - Method in interface ptolemy.actor.Executable
Terminate any currently executing model with extreme prejudice.
terminate() - Method in class ptolemy.actor.lib.hoc.ApplyFilterOverArray
Override the base class to call terminate() on the referenced model.
terminate() - Method in class ptolemy.actor.lib.hoc.ModelReference
Override the base class to call terminate() on the referenced model.
terminate() - Method in class ptolemy.actor.lib.python.PythonScript
Invoke the terminate() method if defined in the script.
terminate() - Method in class ptolemy.actor.Manager
Deprecated. 
terminate() - Method in class ptolemy.actor.parameters.ParameterSet
Do nothing.
terminate() - Method in class ptolemy.actor.process.ProcessDirector
Terminate all threads under control of this director immediately.
terminate() - Method in class ptolemy.domains.modal.kernel.FSMActor
Call stop().
terminate() - Method in class ptolemy.domains.sdf.kernel.test.SDFTestDelay
This method is invoked to immediately terminate any execution within an actor.
TerminateProcessException - Exception in ptolemy.actor.process
This exception is thrown to terminate a process.
TerminateProcessException(String) - Constructor for exception ptolemy.actor.process.TerminateProcessException
Constructs an Exception with only a detail message.
TerminateProcessException(Nameable, String) - Constructor for exception ptolemy.actor.process.TerminateProcessException
Constructs an Exception with a detail message that includes the name of the first argument and the second argument string.
TerminateProcessException(Nameable, Nameable, String) - Constructor for exception ptolemy.actor.process.TerminateProcessException
Constructs an Exception with a detail message that includes the names of the first two arguments plus the third argument string.
terminateWithNewline - Variable in class ptolemy.actor.lib.gui.InteractiveDialog
If true, append a newline to each output string.
termination - Variable in class ptolemy.domains.modal.kernel.Transition
Parameter specifying whether the refinements of the origin state must have terminated (postfire has returned false) for the transition to be enabled.
terminationTransitionList() - Method in class ptolemy.domains.modal.kernel.State
Return the list of termination transitions from this state.
terminator - Variable in class org.sdm.spa.SyncOnTerminator
The terminator element to wait for.
TernaryDiagram - Class in org.geon
This actor reads a string and outputs an array of coordinates and a string of region.
TernaryDiagram() - Constructor for class org.geon.TernaryDiagram
 
Test - Class in org.json
Test class.
Test() - Constructor for class org.json.Test
 
test - Variable in class org.kepler.spark.mllib.ExtractColumns
Outputs the first row of the new dataset only for test purpose
test - Variable in class org.kepler.spark.mllib.StandardizeApply
First row of input dataframe, for testing
Test - Class in ptolemy.actor.lib
This actor compares the inputs against the value specified by the correctValues parameter.
Test(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Test
Construct an actor with an input multiport.
TestAbstractReceiver - Class in ptolemy.actor.test
Test AbstractReceiver.
TestAbstractReceiver(IOPort) - Constructor for class ptolemy.actor.test.TestAbstractReceiver
Construct an empty receiver with the specified container.
TestActor - Class in ptolemy.actor.test
A TestActor is a simple atomic actor that is used for testing the actor package.
TestActor(CompositeActor, String) - Constructor for class ptolemy.actor.test.TestActor
Create a new actor in the specified container with the specified name.
TestActorPortDepth - Class in ptolemy.domains.de.lib
An actor supporting regression tests for DEDirector.
TestActorPortDepth(CompositeEntity, String) - Constructor for class ptolemy.domains.de.lib.TestActorPortDepth
Construct an actor with the specified container and name.
TestComplexBinaryOperation - Class in ptolemy.math.test
A operation taking one argument of type Complex, and producing a value of type Complex.
TestComplexBinaryOperation() - Constructor for class ptolemy.math.test.TestComplexBinaryOperation
 
TestComplexUnaryOperation - Class in ptolemy.math.test
A operation taking one argument of type complex, and producing a value of type complex.
TestComplexUnaryOperation() - Constructor for class ptolemy.math.test.TestComplexUnaryOperation
 
TestComponentPort - Class in ptolemy.kernel.test
This class is used to test protected method(s) in ComponentPort
TestComponentPort(ComponentEntity, String) - Constructor for class ptolemy.kernel.test.TestComponentPort
Construct a TestComponentPort
TestComponentRelation - Class in ptolemy.kernel.test
This class is used to test protected method(s) in ComponentRelation
TestComponentRelation(CompositeEntity, String) - Constructor for class ptolemy.kernel.test.TestComponentRelation
Construct a TestComponentRelation
TestCompositeEntity - Class in ptolemy.kernel.test
This class is used to test protected method(s) in CompositeEntity.java
TestCompositeEntity() - Constructor for class ptolemy.kernel.test.TestCompositeEntity
 
TestConstant - Class in ptolemy.graph.test
A constant InequalityTerm.
TestConstant(String) - Constructor for class ptolemy.graph.test.TestConstant
Construct a constant InequalityTerm with a String value.
TestCopyTo - Class in org.kepler.ssh
Scp several local files to a remote site
TestCopyTo() - Constructor for class org.kepler.ssh.TestCopyTo
 
TestDE - Class in ptolemy.kernel.util.test.system
Test for ChangeRequest in the DE domain.
TestDE() - Constructor for class ptolemy.kernel.util.test.system.TestDE
Constructor.
TestDebugEvent - Class in ptolemy.kernel.util.test
Class used to test DebugEvent
TestDebugEvent(NamedObj) - Constructor for class ptolemy.kernel.util.test.TestDebugEvent
Create a new firing event with the given source, actor, and type.
testDeepConnectedPorts(LinkedList) - Method in class ptolemy.kernel.test.TestComponentPort
Deprecated.
_deepConnectedPorts is deprecated, but we need to test it anyway
testDeepInsidePorts(LinkedList) - Method in class ptolemy.kernel.test.TestComponentPort
Deprecated.
_deepInsidePorts is deprecated, but we need to test it anyway
TestDelete - Class in org.kepler.ssh
This test connects to a host and deletes files matching the given mask.
TestDelete() - Constructor for class org.kepler.ssh.TestDelete
 
TestDirector - Class in ptolemy.domains.pn.kernel.test
This object implements a thread that obtains read permission to a workspace three times sequentially, then calls workspace.wait(obj) on an object and exits.
TestDirector(CompositeActor, String) - Constructor for class ptolemy.domains.pn.kernel.test.TestDirector
 
TestDirectoryListingLocal - Class in org.kepler.io.test
 
TestDirectoryListingLocal() - Constructor for class org.kepler.io.test.TestDirectoryListingLocal
 
TestDirectoryListingRemote - Class in org.kepler.io.test
 
TestDirectoryListingRemote() - Constructor for class org.kepler.io.test.TestDirectoryListingRemote
 
TestDoubleBinaryOperation - Class in ptolemy.math.test
A operation taking two operands of type double, and producing a value of type double.
TestDoubleBinaryOperation() - Constructor for class ptolemy.math.test.TestDoubleBinaryOperation
 
TestDoubleUnaryOperation - Class in ptolemy.math.test
A operation taking one argument of type double, and producing a value of type double.
TestDoubleUnaryOperation() - Constructor for class ptolemy.math.test.TestDoubleUnaryOperation
 
TestEngine - Class in ptolemy.matlab.test
Provides a simple demo of capabilities.
TestEngine() - Constructor for class ptolemy.matlab.test.TestEngine
 
TestExceptionAttribute - Class in ptolemy.actor.lib
This actor tests for exceptions that are expected to occur when running a test model.
TestExceptionAttribute(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.TestExceptionAttribute
Create a new actor in the specified container with the specified name.
TestExceptionHandler - Class in ptolemy.actor.lib
Deprecated.
TestExceptionHandler(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.TestExceptionHandler
Deprecated.
Create a new actor in the specified container with the specified name.
TestExec - Class in org.kepler.ssh
This test connects to a host and executes a command.
TestExec() - Constructor for class org.kepler.ssh.TestExec
 
TestExecMulti - Class in org.kepler.ssh
This test connects to a host and executes two commands at once within the same session.
TestExecMulti() - Constructor for class org.kepler.ssh.TestExecMulti
 
TestExecMulti.SshTest - Class in org.kepler.ssh
 
TestExecThirdparty - Class in org.kepler.ssh
This test connects to a host and executes a command.
TestExecThirdparty() - Constructor for class org.kepler.ssh.TestExecThirdparty
 
TestExecThirdpartyLocal - Class in org.kepler.ssh
This test connects to a host and executes a command.
TestExecThirdpartyLocal() - Constructor for class org.kepler.ssh.TestExecThirdpartyLocal
 
TestFloatBinaryOperation - Class in ptolemy.math.test
A operation taking two operands of type float, and producing a value of type float.
TestFloatBinaryOperation() - Constructor for class ptolemy.math.test.TestFloatBinaryOperation
 
TestFloatUnaryOperation - Class in ptolemy.math.test
A operation taking one argument of type float, and producing a value of type float.
TestFloatUnaryOperation() - Constructor for class ptolemy.math.test.TestFloatUnaryOperation
 
testGetContainedObject(NamedObj, String) - Method in class ptolemy.kernel.test.TestComponentRelation
 
TestGraphReader - Class in ptolemy.actor.test
An application for testing the conversion of Ptolemy models into weighted graphs.
TestGraphReader() - Constructor for class ptolemy.actor.test.TestGraphReader
 
TestIconLoader - Class in ptolemy.moml.test
Test class for ptolemy.moml.IconLoader.
TestIconLoader() - Constructor for class ptolemy.moml.test.TestIconLoader
 
TestInstantiableAttribute - Class in ptolemy.kernel.util.test
 
TestInstantiableAttribute() - Constructor for class ptolemy.kernel.util.test.TestInstantiableAttribute
 
TestInstantiableAttribute(Workspace) - Constructor for class ptolemy.kernel.util.test.TestInstantiableAttribute
 
TestInstantiableAttribute(NamedObj, String) - Constructor for class ptolemy.kernel.util.test.TestInstantiableAttribute
 
TestInstantiableNamedObj - Class in ptolemy.kernel.util.test
 
TestInstantiableNamedObj() - Constructor for class ptolemy.kernel.util.test.TestInstantiableNamedObj
 
TestInstantiableNamedObj(String) - Constructor for class ptolemy.kernel.util.test.TestInstantiableNamedObj
 
TestInstantiableNamedObj(Workspace) - Constructor for class ptolemy.kernel.util.test.TestInstantiableNamedObj
 
TestInstantiableNamedObj(Workspace, String) - Constructor for class ptolemy.kernel.util.test.TestInstantiableNamedObj
 
TestIntegerBinaryOperation - Class in ptolemy.math.test
A operation taking two operands of type int, and producing a value of type int.
TestIntegerBinaryOperation() - Constructor for class ptolemy.math.test.TestIntegerBinaryOperation
 
TestIntegerUnaryOperation - Class in ptolemy.math.test
A operation taking one argument of type int, and producing a value of type int.
TestIntegerUnaryOperation() - Constructor for class ptolemy.math.test.TestIntegerUnaryOperation
 
TestLibraryBuilder - Class in ptolemy.moml.test
Test class for ptolemy.moml.LibraryBuilder.
TestLibraryBuilder() - Constructor for class ptolemy.moml.test.TestLibraryBuilder
 
TestLongBinaryOperation - Class in ptolemy.math.test
A operation taking two operands of type long, and producing a value of type long.
TestLongBinaryOperation() - Constructor for class ptolemy.math.test.TestLongBinaryOperation
 
TestLongUnaryOperation - Class in ptolemy.math.test
A operation taking one argument of type long, and producing a value of type long.
TestLongUnaryOperation() - Constructor for class ptolemy.math.test.TestLongUnaryOperation
 
TestModel - Class in ptolemy.actor.gui.test
A model for testing.
TestModel(Workspace) - Constructor for class ptolemy.actor.gui.test.TestModel
Construct the test model in the supplied workspace.
TestNullNamedObj - Class in ptolemy.kernel.util.test
TestNullNamedObj is like NamedObj, except that null names are permissible.
TestNullNamedObj() - Constructor for class ptolemy.kernel.util.test.TestNullNamedObj
Construct an object in the default workspace with an empty string as its name.
TestNullNamedObj(String) - Constructor for class ptolemy.kernel.util.test.TestNullNamedObj
Construct an object in the default workspace with an empty string as its name.
TestOrderedMerge - Class in ptolemy.actor.lib.test
Test OrderedMerged by covering _getNextPort().
TestOrderedMerge(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.test.TestOrderedMerge
 
TestProcessActor - Class in ptolemy.actor.process.test
A TestProcessActor is a simple atomic actor that is used for testing the actor package constructs for Processes.
TestProcessActor(CompositeActor, String) - Constructor for class ptolemy.actor.process.test.TestProcessActor
Create a new actor in the specified container with the specified name.
testPropagateExistence(NamedObj) - Method in class ptolemy.kernel.test.TestComponentRelation
Test _propagateExistence()
TestPtolemyThread - Class in ptolemy.kernel.util.test
This class is used to test the protected _debug() method in kernel.util.PtolemyThread.
TestPtolemyThread() - Constructor for class ptolemy.kernel.util.test.TestPtolemyThread
Construct a new TestPtolemyThread object.
TestPtolemyThread(Runnable) - Constructor for class ptolemy.kernel.util.test.TestPtolemyThread
Construct a new TestPtolemyThread object.
TestPtolemyThread(Runnable, String) - Constructor for class ptolemy.kernel.util.test.TestPtolemyThread
Construct a new TestPtolemyThread object.
TestPtolemyThread(String) - Constructor for class ptolemy.kernel.util.test.TestPtolemyThread
Construct a new TestPtolemyThread object.
TestPtolemyThread(ThreadGroup, Runnable) - Constructor for class ptolemy.kernel.util.test.TestPtolemyThread
Construct a new TestPtolemyThread object.
TestPtolemyThread(ThreadGroup, Runnable, String) - Constructor for class ptolemy.kernel.util.test.TestPtolemyThread
Construct a new TestPtolemyThread object so that it has target as its run object, has the specified name as its name, and belongs to the thread group referred to by group.
TestPtolemyThread(ThreadGroup, String) - Constructor for class ptolemy.kernel.util.test.TestPtolemyThread
Construct a new TestPtolemyThread object.
testQueries() - Method in class org.ecoinformatics.seek.querybuilder.QBApp
Loads various queries for testing the parser
TestRamp - Class in ptolemy.moml.filter.test
Test out icon handling by the filters.
TestRamp(CompositeEntity, String) - Constructor for class ptolemy.moml.filter.test.TestRamp
Construct an actor with the given container and name.
TestSerializable - Class in ptolemy.kernel.test
This class constructs a system from the Ptolemy II design document, Figure 8, saves it to a file and then reloads it.
TestSerializable() - Constructor for class ptolemy.kernel.test.TestSerializable
 
TestSharedParameter - Class in ptolemy.actor.parameters.test
A test suite parameter that is shared globally in a model.
TestSharedParameter(NamedObj, String) - Constructor for class ptolemy.actor.parameters.test.TestSharedParameter
Construct a parameter with the given container and name.
TestSharedParameter(NamedObj, String, Class) - Constructor for class ptolemy.actor.parameters.test.TestSharedParameter
Construct a parameter with the given container, name, and container class.
TestSharedParameter(NamedObj, String, Class, String) - Constructor for class ptolemy.actor.parameters.test.TestSharedParameter
Construct a parameter with the given container, name, container class, and default value.
TestSink - Class in ptolemy.domains.pn.kernel.test
 
TestSink(CompositeActor, String) - Constructor for class ptolemy.domains.pn.kernel.test.TestSink
Constructor Adds ports to the star
TestSource - Class in ptolemy.domains.de.lib.test
This actor fires itself five times at each time instant, then repeats the cycle one time unit later.
TestSource(Workspace) - Constructor for class ptolemy.domains.de.lib.test.TestSource
 
TestSource(CompositeEntity, String) - Constructor for class ptolemy.domains.de.lib.test.TestSource
 
TestToken - Class in ptolemy.data.type.test
This is a new type of token.
TestToken(Object) - Constructor for class ptolemy.data.type.test.TestToken
Construct a token to be used for testing that encapsulates an object.
TestToken.TestType - Class in ptolemy.data.type.test
The class of this token.
TestType() - Constructor for class ptolemy.data.type.test.TestToken.TestType
 
TestTypedIORelation - Class in ptolemy.actor.test
Class for testing TypedIORelation
TestTypedIORelation() - Constructor for class ptolemy.actor.test.TestTypedIORelation
 
TestTypeLattice - Class in ptolemy.data.type.test
Test multiple threads on a TypeLattice.
TestTypeLattice() - Constructor for class ptolemy.data.type.test.TestTypeLattice
 
TestTypeListener - Class in ptolemy.actor.test
This dummy type listener implements the TypeListener interface.
TestTypeListener() - Constructor for class ptolemy.actor.test.TestTypeListener
 
TestVariable - Class in ptolemy.graph.test
A variable InequalityTerm.
TestVariable() - Constructor for class ptolemy.graph.test.TestVariable
Construct a variable InequalityTerm with a null initial value.
TestVariable(String) - Constructor for class ptolemy.graph.test.TestVariable
Construct a variable InequalityTerm with the specified initial value.
TestWorkspace - Class in ptolemy.kernel.util.test
This object implements a thread that obtains read permission to a workspace three times sequentially, then obtains write permission.
TestWorkspace(String, Workspace) - Constructor for class ptolemy.kernel.util.test.TestWorkspace
 
TestWorkspace2 - Class in ptolemy.kernel.util.test
This object implements a thread that obtains read permission to a workspace three times sequentially, then calls workspace.wait(obj) on an object and exits.
TestWorkspace2(String, Workspace) - Constructor for class ptolemy.kernel.util.test.TestWorkspace2
 
TestWorkspace2.Notification - Class in ptolemy.kernel.util.test
Repeatedly calls notifyAll on itself to wake up any threads waiting on it.
TestWorkspace3 - Class in ptolemy.kernel.util.test
Test the following scenario: thread T1 gets read access; thread T2 gets read access; T1 waits for write access; T2 releases read access; T1 wakes up and gets write access.
TestWorkspace3() - Constructor for class ptolemy.kernel.util.test.TestWorkspace3
 
TestWorkspace4 - Class in ptolemy.kernel.util.test
Test the following scenario: thread T1 gets write access; T2 waits for read access and is interrupted, then waits for read access again; T1 releases write access; T2 gets/releases read access; another thread T3 gets write access; T2 handles failure (being interrupted) in getting read access.
TestWorkspace4() - Constructor for class ptolemy.kernel.util.test.TestWorkspace4
 
TestWorkspace5 - Class in ptolemy.kernel.util.test
Test the following scenario: thread T1 gets read access; T2 waits for write access and is interrupted, then waits for write access again; T1 releases read access; T2 gets/releases write access; another thread T3 gets read access; T2 handles failure (being interrupted) in getting write access.
TestWorkspace5() - Constructor for class ptolemy.kernel.util.test.TestWorkspace5
 
TestWorkspace6 - Class in ptolemy.kernel.util.test
Test the following scenario: thread T1 gets read access twice, then waits on a lock object (and in doing so, releases the read access); T2 gets/releases write access; T1 is interrupted, and reacquires read access.
TestWorkspace6() - Constructor for class ptolemy.kernel.util.test.TestWorkspace6
 
TestWorkspaceBase - Class in ptolemy.kernel.util.test
A base class for creating tests on the workspace synchronization features.
TestWorkspaceBase() - Constructor for class ptolemy.kernel.util.test.TestWorkspaceBase
 
text - Variable in class org.kepler.actor.Logger
The text to be printed into the log.
TEXT - Static variable in class org.kepler.reporting.rio.StaticReportItemText
 
TEXT - Static variable in class org.kepler.util.sql.Column
A text column.
text - Variable in class ptolemy.actor.gui.TextEditor
The text area.
text - Variable in class ptolemy.domains.de.lib.EventButton
Deprecated.
The text to put on the button.
text - Variable in class ptolemy.vergil.kernel.attributes.TextAttribute
The text.
TEXT_UNLIMITED - Static variable in class org.kepler.util.sql.Column
A text column with no maximum length.
textArea - Variable in class ptolemy.actor.lib.gui.DisplayJavaSE
The text area in which the data will be displayed.
TextAreaDocumentListener() - Constructor for class org.kepler.reporting.gui.ReportDesignerPanel.TextAreaDocumentListener
 
TextAreaItemMouseListener() - Constructor for class org.kepler.reporting.gui.ReportDesignerPanel.TextAreaItemMouseListener
 
TextAreaReporting - Class in org.kepler.reporting.gui
 
TextAreaReporting(String, int, int) - Constructor for class org.kepler.reporting.gui.TextAreaReporting
 
TextAttribute - Class in ptolemy.vergil.kernel.attributes
This is an attribute that is rendered as text annotation.
TextAttribute(NamedObj, String) - Constructor for class ptolemy.vergil.kernel.attributes.TextAttribute
Construct an attribute with the given name contained by the specified container.
textColor - Variable in class ptolemy.vergil.basic.export.web.Title
The text color.
textColor - Variable in class ptolemy.vergil.kernel.attributes.AbstractTextAttribute
The text color.
TextComplexDataFormat - Interface in org.kepler.objectmanager.data.text
 
TextComplexFormatDataReader - Class in org.kepler.objectmanager.data.text
 
TextComplexFormatDataReader(InputStream, Entity) - Constructor for class org.kepler.objectmanager.data.text.TextComplexFormatDataReader
Consturctor with default stripHeader value - true
TextComplexFormatDataReader(InputStream, Entity, boolean) - Constructor for class org.kepler.objectmanager.data.text.TextComplexFormatDataReader
Constructor with assigned stripHeader value
TextDelimitedDataFormat - Class in org.kepler.objectmanager.data.text
 
TextDelimitedDataFormat(String) - Constructor for class org.kepler.objectmanager.data.text.TextDelimitedDataFormat
Constructor
TextDomain - Class in org.kepler.objectmanager.data.text
 
TextDomain() - Constructor for class org.kepler.objectmanager.data.text.TextDomain
Constructor for text domain
TextEditor - Class in ptolemy.actor.gui
A top-level window containing a simple text editor or viewer.
TextEditor() - Constructor for class ptolemy.actor.gui.TextEditor
Construct an empty text editor with no name.
TextEditor(String) - Constructor for class ptolemy.actor.gui.TextEditor
Construct an empty text editor with the specified title.
TextEditor(String, Document) - Constructor for class ptolemy.actor.gui.TextEditor
Construct an empty text editor with the specified title and document.
TextEditor(String, Document, Placeable) - Constructor for class ptolemy.actor.gui.TextEditor
Construct an empty text editor with the specified title and document and associated placeable.
TextEditor(String, Document, PortablePlaceable) - Constructor for class ptolemy.actor.gui.TextEditor
Construct an empty text editor with the specified title and document and associated poratalbeplaceable.
TextEditor.ExportImageAction - Class in ptolemy.actor.gui
Export an image.
TextEditorConfigureFactory - Class in ptolemy.vergil.toolbox
If this class is contained by a actor, then double clicking on that actor will invoke a text editor that edits the value of a specified string attribute.
TextEditorConfigureFactory(NamedObj, String) - Constructor for class ptolemy.vergil.toolbox.TextEditorConfigureFactory
Construct a factory with the specified container and name.
TextEditorFactory - Interface in ptolemy.vergil.toolbox
An interface for objects with a clear() method.
TextEditorForStringAttributes - Class in ptolemy.vergil.toolbox
A text editor to edit a specified string attribute or parameter.
TextEditorForStringAttributes(TextEditorFactory, Attribute, int, int, String) - Constructor for class ptolemy.vergil.toolbox.TextEditorForStringAttributes
Create a annotation text editor for the specified attribute.
TextEditorForStringAttributes(TextEditorFactory, Attribute, int, int, String, Document) - Constructor for class ptolemy.vergil.toolbox.TextEditorForStringAttributes
Create a annotation text editor for the specified attribute.
TextEditorTableau - Class in ptolemy.actor.gui
A tableau representing a text window.
TextEditorTableau(TextEffigy, String) - Constructor for class ptolemy.actor.gui.TextEditorTableau
Construct a new tableau for the model represented by the given effigy.
TextEditorTableau(TextEffigy, String, TextEditor) - Constructor for class ptolemy.actor.gui.TextEditorTableau
Construct a new tableau for the model represented by the given effigy.
TextEditorTableau.Factory - Class in ptolemy.actor.gui
A factory that creates text editor tableaux for Ptolemy models.
TextEditorTableauFactory - Class in ptolemy.vergil.toolbox
This class is an attribute that creates a text editor to edit a specified string attribute in the container of this attribute.
TextEditorTableauFactory(NamedObj, String) - Constructor for class ptolemy.vergil.toolbox.TextEditorTableauFactory
Create a factory with the given name and container.
TextEffigy - Class in ptolemy.actor.gui
An effigy for a text file.
TextEffigy(Workspace) - Constructor for class ptolemy.actor.gui.TextEffigy
Create a new effigy in the specified workspace with an empty string for its name.
TextEffigy(CompositeEntity, String) - Constructor for class ptolemy.actor.gui.TextEffigy
Create a new effigy in the given directory with the given name.
TextEffigy.Factory - Class in ptolemy.actor.gui
A factory for creating new effigies.
TextFieldContainerInterface - Interface in ptolemy.actor.lib.gui
The instance of this class would be able to visualize the value of a token within a text field that is placed into a container.
TextFieldContainerJavaSE - Class in ptolemy.actor.lib.gui
JavaSE implementation of the TextFieldContainerInterface.
TextFieldContainerJavaSE() - Constructor for class ptolemy.actor.lib.gui.TextFieldContainerJavaSE
 
textFieldDims - Static variable in class org.kepler.gui.TabbedDialog
dims of dialog text input fields
TextFileReader - Class in org.skidlkit
This actor reads a text file and outputs an array of the evaluations of all lines read.
TextFileReader(CompositeEntity, String) - Constructor for class org.skidlkit.TextFileReader
Construct an actor with the given container and name.
TextFileRecording - Class in org.kepler.provenance
A provenance Recording that writes to a text file.
TextFileRecording() - Constructor for class org.kepler.provenance.TextFileRecording
Create a new provenance recording.
TextFileRecording.TextFileRecordingParameters - Class in org.kepler.provenance
Configuration Parameters for TextFileRecording.
TextFileWriter - Class in org.resurgence.actor
This actor reads a string-valued input token and writes it to the corresponding file without any extra line breaks.
TextFileWriter(CompositeEntity, String) - Constructor for class org.resurgence.actor.TextFileWriter
Construct a TextFileWriter with the given container and name.
TextIcon - Class in ptolemy.vergil.icon
An icon that displays specified text.
TextIcon(NamedObj, String) - Constructor for class ptolemy.vergil.icon.TextIcon
Create a new icon with the given name in the given container.
textPosition - Variable in class ptolemy.vergil.basic.export.web.HTMLText
Parameter specifying the position into which to export HTML text.
textSize - Variable in class ptolemy.vergil.basic.export.web.Title
The text size.
textSize - Variable in class ptolemy.vergil.kernel.attributes.AbstractTextAttribute
The text size.
TextStyle - Class in ptolemy.actor.gui.style
This attribute annotates user settable attributes to specify an arbitrary multi-line text area style for configuring the containing attribute.
TextStyle() - Constructor for class ptolemy.actor.gui.style.TextStyle
Construct an attribute in the default workspace with an empty string as its name.
TextStyle(NamedObj, String) - Constructor for class ptolemy.actor.gui.style.TextStyle
Construct an attribute with the specified container and name.
TextualInteractionShell - Class in org.sdm.spa
This actor creates a command shell on the screen, sending commands that are typed by the user to its output port, and reporting strings received at its input by displaying them.
TextualInteractionShell(CompositeEntity, String) - Constructor for class org.sdm.spa.TextualInteractionShell
Construct an actor with the given container and name.
TextualInteractionShell.ShellFrame - Class in org.sdm.spa
The frame that is created by an instance of ShellTableau.
TextualInteractionShell.ShellTableau - Class in org.sdm.spa
Version of ExpressionShellTableau that records the size of the display when it is closed.
TextWidthFixedDataFormat - Class in org.kepler.objectmanager.data.text
This class express a width-fixed text format
TextWidthFixedDataFormat(int) - Constructor for class org.kepler.objectmanager.data.text.TextWidthFixedDataFormat
Constructor with field width
THERE_ARE_NO_AUTO_ARCH_TESTS - Static variable in class ptolemy.util.test.junit.ModelTests
A special string that is passed when there are no known failed tests.
THERE_ARE_NO_AUTO_TESTS - Static variable in class ptolemy.util.test.junit.ModelTests
A special string that is passed when there are no known failed tests.
THERE_ARE_NO_KNOWN_FAILED_TESTS - Static variable in class ptolemy.util.test.junit.ModelTests
A special string that is passed when there are no known failed tests.
THERE_ARE_NO_TCL_TESTS - Static variable in class ptolemy.util.test.junit.TclTests
A special string that is passed when there are no tcl tests.
thirdParty - Variable in class org.kepler.actor.gsissh.ExecGsisshCmd
Third party target in user@host:port format.
thirdParty - Variable in class org.kepler.actor.ssh.ExecuteCmd
Third party target in user@host:port format.
thirdParty - Variable in class org.sdm.spa.ProcessFileRT
Third party target in user@host:port format.
threadBlocked(Thread, ProcessReceiver) - Method in class ptolemy.actor.process.CompositeProcessDirector
Notify the director that the specified thread is blocked on an I/O operation.
threadBlocked(Thread, ProcessReceiver) - Method in class ptolemy.actor.process.ProcessDirector
Notify the director that the specified thread is blocked on an I/O operation.
threadBlocked(Thread, ProcessReceiver, boolean) - Method in class ptolemy.domains.pn.kernel.PNDirector
Notify the director that the specified thread is blocked on an I/O operation.
ThreadedComposite - Class in ptolemy.actor.lib.hoc
A container for another actor that executes that other actor in a separate thread called the inside thread.
ThreadedComposite(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.hoc.ThreadedComposite
Create an actor with a name and a container.
ThreadedComposite.TokenFrame - Class in ptolemy.actor.lib.hoc
Bundle data associated with ports and a time stamp.
threadHasPaused(Thread) - Method in class ptolemy.actor.process.ProcessDirector
Notify the director that the specified thread has paused in response to a call to stopFire().
threadHasResumed(Thread) - Method in class ptolemy.actor.process.ProcessDirector
Notify the director that the specified thread has resumed.
threadResp - Variable in class org.geon.ExecutionThread
 
threadResp - Variable in class org.geon.LidarUtilities
 
threadResp - Variable in class org.geon.ValidationThread
 
ThreadStreamExec - Class in ptolemy.util.test
Wrap StreamExec in a thread.
ThreadStreamExec(String, List) - Constructor for class ptolemy.util.test.ThreadStreamExec
Consruct a ThreadStreamExec.
threadUnblocked(Thread, ProcessReceiver) - Method in class ptolemy.actor.process.CompositeProcessDirector
Notify the director that the specified thread is unblocked on an I/O operation.
threadUnblocked(Thread, ProcessReceiver) - Method in class ptolemy.actor.process.ProcessDirector
Notify the director that the specified thread is unblocked on an I/O operation.
threadUnblocked(Thread, ProcessReceiver, boolean) - Method in class ptolemy.domains.pn.kernel.PNDirector
Notify the director that the specified thread is unblocked on an I/O operation.
ThreeDigitVersionSpecification - Class in org.ptolemy.commons
A simple implementation of a version specification, based on a merge of OSGi-conventions and Ptolemy (which in turn seems to be based on JNLP).
ThreeDigitVersionSpecification(int, int, int, String...) - Constructor for class org.ptolemy.commons.ThreeDigitVersionSpecification
Construct a three digit version specification.
threshold - Variable in class ptolemy.actor.lib.ArrayLevelCrossing
The threshold to look for.
threshold - Variable in class ptolemy.data.expr.ConstraintMonitor
Threshold at which this monitor issues a warning, if ConstraintMonitor.warningEnabled is true.
THROW - Static variable in class ptolemy.actor.lib.CatchExceptionAttribute
String value for the "throw" policy.
THROW - Static variable in class ptolemy.math.Overflow
Singleton implementing Trap overflow strategy.
throwArgsException(Throwable, String[]) - Static method in class ptolemy.actor.gui.ConfigurationApplication
Throw an exception that includes the elements of the args parameter.
ThrowException - Class in ptolemy.actor.lib
An actor that throws an IllegalActionException when it receives a true token on any input channel.
ThrowException(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.ThrowException
Construct an actor in the specified container with the specified name.
throwExceptionOnNonZeroReturn - Variable in class ptolemy.actor.lib.Exec
If true, then throw an exception if the subprocess returns non-zero.
THROWING_A_THROWABLE - Static variable in class ptolemy.actor.Manager
Indicator that the execution is throwing a throwable.
throwInPostfire - Variable in class ptolemy.actor.lib.ThrowException
True to throw the model error in the postfire method.
throwInPostfire - Variable in class ptolemy.actor.lib.ThrowModelError
True to throw the model error in the postfire method.
ThrowModelError - Class in ptolemy.actor.lib
An actor that throws a model error when it receives a true token on any input channel.
ThrowModelError(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.ThrowModelError
Construct an actor in the specified container with the specified name.
thrsRelHum - Variable in class org.kepler.spark.mllib.SantaAnaIdentify
Relative humidity threshold
thrsWindDirection - Variable in class org.kepler.spark.mllib.SantaAnaIdentify
Wind direction threshold
thrsWindSpeed - Variable in class org.kepler.spark.mllib.SantaAnaIdentify
Wind speed threshold
time - Variable in class ptolemy.actor.lib.hoc.ThreadedComposite.TokenFrame
The time.
time - Variable in class ptolemy.actor.lib.SingleEvent
The time at which to produce the output.
Time - Class in ptolemy.actor.util
An object of the Time class represents time in a model.
Time(Director) - Constructor for class ptolemy.actor.util.Time
Construct a Time object with zero as the time value.
Time(Director, double) - Constructor for class ptolemy.actor.util.Time
Construct a Time object with the specified double value as its time value.
Time(Director, long) - Constructor for class ptolemy.actor.util.Time
Construct a Time object with the specified long value as its time value.
Time - Class in ptolemy.domains.de.lib.test
 
Time() - Constructor for class ptolemy.domains.de.lib.test.Time
 
Time - Class in ptolemy.domains.sdf.lib.test
 
Time() - Constructor for class ptolemy.domains.sdf.lib.test.Time
 
timeAndMemory(long) - Static method in class ptolemy.actor.Manager
Return a string with the elapsed time since startTime, and the amount of memory used.
timeAndMemory(long, long, long) - Static method in class ptolemy.actor.Manager
Return a string with the elapsed time since startTime, and the amount of memory used.
timeAndMemoryLong(Long) - Static method in class ptolemy.actor.Manager
Return a string with the elapsed time since startTime, and the amount of memory used.
timeBuffer - Variable in class org.kepler.gis.actor.pylaski.GetPylaskiMeasurements
 
TimeComparator() - Constructor for class ptolemy.actor.util.TimedEvent.TimeComparator
Construct a TimeComparator object.
TimeCompare - Class in ptolemy.domains.de.lib
A DE actor to compare the time stamps of events at its two input ports, and output the difference.
TimeCompare(CompositeEntity, String) - Constructor for class ptolemy.domains.de.lib.TimeCompare
Construct an actor with the specified container and name.
timeConstant - Variable in class ptolemy.actor.lib.GradientAdaptiveLattice
The time constant of the filter, which determines how fast the filter adapts.
TimedActor - Interface in ptolemy.actor
This is a marker interface for actors that operate on time-based signals.
TimedDelay - Class in ptolemy.domains.de.lib
Deprecated.
Use actor.lib.TimeDelay.
TimedDelay(CompositeEntity, String) - Constructor for class ptolemy.domains.de.lib.TimedDelay
Deprecated.
Construct an actor with the specified container and name.
TimedDisplay - Class in ptolemy.actor.lib.gui
Display the model time and the input.
TimedDisplay(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.gui.TimedDisplay
Construct an actor with an input multiport of type GENERAL that displays the model time and the value of the input.
TimeDelay - Class in ptolemy.actor.lib
This actor delays the input by a specified amount of time given by the delay port or parameter, which defaults to 1.0.
TimeDelay(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.TimeDelay
Construct an actor with the specified container and name.
TimeDelay.PendingEvent - Class in ptolemy.actor.lib
Data structure to store pending events.
TimedEvent - Class in ptolemy.actor.util
This class aggregates an instance of Time and an Object, and provides a CQComparator as an inner class.
TimedEvent(Time, Object) - Constructor for class ptolemy.actor.util.TimedEvent
Construct an event with the specified time stamp and contents.
TimedEvent.TimeComparator - Class in ptolemy.actor.util
This class implements the CQComparator interface.
TimedMonitorValue - Class in ptolemy.actor.lib.gui
Monitor inputs by setting the value parameter equal to each arriving token.
TimedMonitorValue(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.gui.TimedMonitorValue
Construct an actor.
TimedPlotter - Class in ptolemy.actor.lib.gui
A signal plotter.
TimedPlotter(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.gui.TimedPlotter
Construct an actor with the given container and name.
TimedPNDirector - Class in ptolemy.domains.pn.kernel
A TimedPNDirector governs the execution of a CompositeActor with Kahn-MacQueen process networks (PN) semantics extended by introduction of a notion of global time.
TimedPNDirector() - Constructor for class ptolemy.domains.pn.kernel.TimedPNDirector
Construct a director in the default workspace with an empty string as its name.
TimedPNDirector(Workspace) - Constructor for class ptolemy.domains.pn.kernel.TimedPNDirector
Construct a director in the workspace with an empty name.
TimedPNDirector(CompositeEntity, String) - Constructor for class ptolemy.domains.pn.kernel.TimedPNDirector
Construct a director in the given container with the given name.
TimedScope - Class in ptolemy.actor.lib.gui
A signal plotter that plots in an oscilloscope style, meaning that the horizontal axis is wrapped and that there is finite persistence.
TimedScope(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.gui.TimedScope
Construct an actor with the given container and name.
TimedSource - Class in ptolemy.actor.lib
Base class for time-based sources.
TimedSource(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.TimedSource
Construct an actor with the given container and name.
TIMEEXAMPLE - Static variable in class org.kepler.workflowscheduler.gui.WorkflowSchedulerPanel
 
TimeGap - Class in ptolemy.domains.de.lib
This actor measures the time interval between arrivals of successive input tokens.
TimeGap(CompositeEntity, String) - Constructor for class ptolemy.domains.de.lib.TimeGap
Construct an actor with the specified container and name.
timeInMillis - Variable in class ptolemy.actor.lib.DateConstructor
The time as a long value representing the milliseconds since January 1, 1970.
timeInMillis - Variable in class ptolemy.actor.lib.DateElements
Time in UTC milliseconds since epoch.
TIMEOUT - Static variable in class org.camera.service.CAMERARESTService
 
timeout - Variable in class org.sdm.spa.actors.transport.FileCopierBase
 
timeout - Variable in class org.sdm.spa.WebService
The timeout duration in web service call.
timeout - Variable in class org.sdm.spa.WSWithComplexTypes
The timeout in milliseconds used by transport sender.
timeout - Variable in class ptolemy.domains.modal.kernel.FSMActor
Parameter that is a function that evaluates to true when the time elapsed in the current state equals the argument to the function.
timeoutSeconds - Variable in class org.kepler.actor.gsissh.ExecGsisshCmd
Timeout in seconds for the command to be executed. 0 means waiting indefinitely for command termination.
timeoutSeconds - Variable in class org.kepler.actor.ssh.ExecuteCmd
Timeout in seconds for the command to be executed. 0 means waiting indefinitely for command termination.
timeoutSeconds - Variable in class org.sdm.spa.actors.transport.GenericFileCopier
Timeout in seconds for the command to be executed. 0 means waiting indefinitely for command termination.
timeoutSeconds - Variable in class org.sdm.spa.ProcessFileRT
Timeout in seconds for the command to be executed. 0 means waiting indefinitely for command termination.
Timer - Class in ptolemy.domains.de.lib
Deprecated.
Use VariableDelay instead, which is essentially identical, or ResettableTimer for a more reasonable timer behavior.
Timer(CompositeEntity, String) - Constructor for class ptolemy.domains.de.lib.Timer
Deprecated.
Construct an actor with the specified container and name.
timerDelay - Variable in class org.kepler.monitor.MonitorAttribute
 
timerDelay - Variable in class org.kepler.monitor.MonitorManager
Delay for the timer
timerDelay - Variable in class org.kepler.monitor.test.ActorWithTrafficLight
Delay for the timer
TimerDemo - Class in com.microstar.xml.demo
Demonstration application showing time elapsed for parse.
TimerDemo() - Constructor for class com.microstar.xml.demo.TimerDemo
 
TimeRegulator - Interface in ptolemy.actor
This interface is implemented by attributes that wish to be consulted when a director advances time.
times - Variable in class org.ROADnet.OrbWaveformSink
The packet time of the ORB stream being written to
times - Variable in class org.ROADnet.OrbWaveformSource
The timestamps for individual samples are output on this port.
TIMESTAMP - Static variable in class org.kepler.util.sql.Column
A timestamp column.
Timestamp - Class in org.sdm.spa
Returns the current date and time in "yyyy-MM-dd z HH:mm:ss" format.
Timestamp(CompositeEntity, String) - Constructor for class org.sdm.spa.Timestamp
Construct a constant source with the given container and name.
timeStamp - Variable in class ptolemy.actor.lib.TimeDelay.PendingEvent
The time stamp for the pending event.
timestamp() - Method in class ptolemy.actor.util.SuperdenseTime
Return the timestamp.
timeStamp - Variable in class ptolemy.actor.util.TimedEvent
The time stamp.
timeStamp() - Method in class ptolemy.domains.de.kernel.DEEvent
Return the timestamp.
TIMESTAMPFORMAT - Static variable in class org.kepler.workflowscheduler.gui.WorkflowSchedulerPanel
 
TIMESTAMPFORMATWITHTIMEZONE - Static variable in class org.kepler.workflowscheduler.gui.WorkflowSchedulerPanel
 
timeValue() - Method in class ptolemy.actor.util.SuperdenseDependency
Return the time value of this dependency.
timeZoneOffset - Variable in class ptolemy.actor.lib.DateConstructor
The time zone offset.
timeZoneOffset - Variable in class ptolemy.actor.lib.DateElements
Time zone offset of date received on input.
title - Variable in class org.ecoinformatics.seek.ecogrid.quicksearch.SearchQuery
 
title - Variable in class org.kepler.gis.actor.conversions.VectorToRaster
The title of the raster.
title - Variable in class org.kepler.reporting.roml.ReportLayout
 
title - Variable in class org.kepler.webview.actor.WebViewAttribute
 
title - Variable in class ptolemy.actor.lib.gui.Display
The title to put on top.
title - Variable in class ptolemy.actor.lib.gui.SliderSource
The title to put on top.
Title - Class in ptolemy.vergil.basic.export.web
Attribute specifying a title for a model or a component in a model.
Title(NamedObj, String) - Constructor for class ptolemy.vergil.basic.export.web.Title
Create an instance of this parameter.
TITLE_BINARY - Static variable in interface org.kepler.dataproxy.datasource.DataSourceInterface
 
TITLE_BUSY - Static variable in interface org.kepler.dataproxy.datasource.DataSourceInterface
 
TITLE_ERROR - Static variable in interface org.kepler.dataproxy.datasource.DataSourceInterface
 
TitleDocumentListener() - Constructor for class org.kepler.reporting.gui.ReportDesignerPanel.TitleDocumentListener
 
tmp_dir - Variable in class org.eol.WmsdActor
 
tmpPath - Static variable in class org.kepler.objectmanager.cache.CacheManager
 
to - Variable in class org.kepler.modulemanager.gui.patch.ModulePair
 
TO_FIRST - Static variable in class ptolemy.vergil.toolbox.MoveAction
Indicator for move to first.
TO_LAST - Static variable in class ptolemy.vergil.toolbox.MoveAction
Indicator for move to last.
TO_ZERO - Static variable in class ptolemy.math.Overflow
Singleton implementing to zero overflow strategy.
toAddress - Variable in class org.sdm.spa.Email
Email address that the email will be sent to.
toArray() - Method in class ptolemy.actor.util.CalendarQueue
Return the entries currently in the queue as an array.
toArray(int) - Method in class ptolemy.actor.util.CalendarQueue
Return the entries currently in the queue, but no more of them than the number given as an argument.
toArray() - Method in class ptolemy.data.MatrixToken
Return an ArrayToken containing the all the values of this matrix token.
toArray() - Method in class ptolemy.domains.de.kernel.DECQEventQueue
Return the events currently in the queue as an array.
toArray() - Method in interface ptolemy.domains.de.kernel.DEEventQueue
Return the events currently in the queue as an array.
toArray() - Method in class ptolemy.graph.LabeledList
Returns an array containing all of the elements in this list in proper sequence.
toArray(Object[]) - Method in class ptolemy.graph.LabeledList
Returns an array containing all of the elements in this list in proper sequence; the runtime type of the returned array is that of the specified array.
toArrayColumnMajor() - Method in class ptolemy.data.MatrixToken
Return an ArrayToken containing the all the values of this matrix token.
toArrayReturnType(Type) - Static method in class ptolemy.data.MatrixToken
Return the (exact) return type of the toArray function above.
toBitString() - Method in class ptolemy.math.FixPoint
Return a bit string representation of this number.
toBrowser - Variable in class org.geon.PointinPolygon
A URL for display the point in the regions.
toCache - Static variable in class org.sdm.spa.Util
 
toComplexArray(double[]) - Static method in class ptolemy.math.DoubleArrayMath
Return a new array that is formed by converting the doubles in the argument array to complex numbers.
toComplexArray(float[]) - Static method in class ptolemy.math.FloatArrayMath
Return a new array that is formed by converting the floats in the argument array to complex numbers.
toComplexArray(int[]) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array that is formed by converting the integers in the argument array to complex numbers.
toComplexArray(long[]) - Static method in class ptolemy.math.LongArrayMath
Return a new array that is formed by converting the long numbers in the argument array to complex numbers.
toComplexMatrix(double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new matrix that is formed by converting the doubles in the argument matrix to complex numbers.
toComplexMatrix(float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Return a new matrix that is formed by converting the floats in the argument matrix to complex numbers.
toComplexMatrix(int[][]) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new matrix that is formed by converting the integers in the argument matrix to complex numbers.
toComplexMatrix(long[][]) - Static method in class ptolemy.math.LongMatrixMath
Return a new matrix that is formed by converting the long values in the argument matrix to complex numbers.
toDecibels(double) - Static method in class ptolemy.math.SignalProcessing
Return the value of the argument in decibels, which is defined to be 20*log10(z), where z is the argument.
toDirectedAcyclicGraph() - Method in class ptolemy.graph.DirectedGraph
Return an acyclic graph if this graph is acyclic.
toDocML() - Method in class ptolemy.vergil.basic.KeplerDocumentationAttribute
Exports this documentation attribute as docML.
toDouble(Object) - Method in class ptolemy.graph.mapping.ToDoubleMapMapping
Return the double value that is associated with given object under this mapping.
toDouble(Object) - Method in interface ptolemy.graph.mapping.ToDoubleMapping
Return the double value associated with the given object.
toDouble() - Method in class ptolemy.math.Fraction
Convert the fraction to a double.
toDouble(int) - Method in class ptolemy.media.Audio
Convert the audio data to linear double encoding (from mu-law).
toDoubleArray(float[]) - Static method in class ptolemy.math.FloatArrayMath
Return a new array that is formed by converting the floats in the argument array to doubles.
toDoubleArray(Fraction[]) - Static method in class ptolemy.math.FractionArrayMath
Return a new array that is formed by converting the Fractions in the argument array to doubles.
toDoubleArray(int[]) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array that is formed by converting the ints in the argument array to doubles.
toDoubleArray(long[]) - Static method in class ptolemy.math.LongArrayMath
Return a new array that is formed by converting the longs in the argument array to doubles.
ToDoubleMapMapping - Class in ptolemy.graph.mapping
A ToDoubleMapping that is based on a Map.
ToDoubleMapMapping(Map) - Constructor for class ptolemy.graph.mapping.ToDoubleMapMapping
Construct a ToDoubleMapMapping from a given map.
ToDoubleMapping - Interface in ptolemy.graph.mapping
A mapping from objects into multiple double values.
toDoubleMatrix(float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Return a new matrix that is formed by converting the floats in the argument matrix to doubles.
toDoubleMatrix(Fraction[][]) - Static method in class ptolemy.math.FractionMatrixMath
Return a new matrix that is formed by converting the Fractions in the argument matrix to doubles.
toDoubleMatrix(int[][]) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new matrix that is formed by converting the ints in the argument matrix to doubles.
toDoubleMatrix(long[][]) - Static method in class ptolemy.math.LongMatrixMath
Return a new matrix that is formed by converting the longs in the argument matrix to doubles.
toFloat() - Method in class ptolemy.math.Fraction
Convert the fraction to a float.
toFloatArray(double[]) - Static method in class ptolemy.math.DoubleArrayMath
Return a new array that is formed by converting the doubles in the argument array to doubles.
toFloatArray(int[]) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array that is formed by converting the ints in the argument array to doubles.
toFloatArray(long[]) - Static method in class ptolemy.math.LongArrayMath
Return a new array that is formed by converting the longs in the argument array to doubles.
toFloatMatrix(double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new matrix that is formed by converting the doubles in the argument matrix to floats.
toFloatMatrix(int[][]) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new matrix that is formed by converting the ints in the argument matrix to floats.
toFloatMatrix(long[][]) - Static method in class ptolemy.math.LongMatrixMath
Return a new matrix that is formed by converting the longs in the argument matrix to floats.
toGeoJSONString(SimpleFeatureCollection) - Static method in class org.kepler.gis.util.VectorUtilities
Convert a set of features into a GeoJSON string.
toggle(boolean) - Method in class org.kepler.profiling.gui.ExecutionMonitorPanel
This method is called when provenance is enabled or disabled.
toggle(boolean) - Method in class org.kepler.provenance.gui.ProvenanceConfigureAction
This method is called when provenance is enabled or disabled.
toggle(boolean) - Method in interface org.kepler.provenance.ProvenanceEnabledListener
This method is called when provenance is enabled or disabled.
toggle(boolean) - Method in class org.kepler.reporting.gui.ReportViewerPanel
 
toggle(boolean) - Method in class org.kepler.workflowrunmanager.gui.WorkflowRunManagerPanel
 
ToggleAllPortNamesAction - Class in org.kepler.gui
An action to toggle displaying all port names.
ToggleAllPortNamesAction(TableauFrame) - Constructor for class org.kepler.gui.ToggleAllPortNamesAction
 
ToggleLsidAction - Class in org.kepler.gui.component
This action toggles the LSID of a Component Item in the Library.
ToggleLsidAction() - Constructor for class org.kepler.gui.component.ToggleLsidAction
Constructor
toInt(Object) - Method in class ptolemy.graph.mapping.ToIntMapMapping
Return the int value that is associated with given object under this mapping.
toInt(Object) - Method in interface ptolemy.graph.mapping.ToIntMapping
Return the int value associated with the given object.
toIntegerArray(double[]) - Static method in class ptolemy.math.DoubleArrayMath
Return a new array that is formed by converting the doubles in the argument array to integers.
toIntegerArray(float[]) - Static method in class ptolemy.math.FloatArrayMath
Return a new array that is formed by converting the floats in the argument array to integers.
toIntegerArray(long[]) - Static method in class ptolemy.math.LongArrayMath
Return a new array that is formed by converting the longs in the argument array to integers.
toIntegerMatrix(double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new matrix that is formed by converting the doubles in the argument matrix to integers.
toIntegerMatrix(float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Return a new matrix that is formed by converting the floats in the argument matrix to integers.
toIntegerMatrix(long[][]) - Static method in class ptolemy.math.LongMatrixMath
Return a new matrix that is formed by converting the longs in the argument matrix to integers.
ToIntMapMapping - Class in ptolemy.graph.mapping
A ToIntMapping that is based on a Map.
ToIntMapMapping(Map) - Constructor for class ptolemy.graph.mapping.ToIntMapMapping
Construct a ToIntMapMapping from a given map.
ToIntMapping - Interface in ptolemy.graph.mapping
A mapping from objects into int values.
toJSONArray(String) - Static method in class org.json.CDL
Produce a JSONArray of JSONObjects from a comma delimited text string, using the first row as a source of names.
toJSONArray(JSONTokener) - Static method in class org.json.CDL
Produce a JSONArray of JSONObjects from a comma delimited text string, using the first row as a source of names.
toJSONArray(JSONArray, String) - Static method in class org.json.CDL
Produce a JSONArray of JSONObjects from a comma delimited text string using a supplied JSONArray as the source of element names.
toJSONArray(JSONArray, JSONTokener) - Static method in class org.json.CDL
Produce a JSONArray of JSONObjects from a comma delimited text string using a supplied JSONArray as the source of element names.
toJSONArray(String) - Static method in class org.json.JSONML
Convert a well-formed (but not necessarily valid) XML string into a JSONArray using the JsonML transform.
toJSONArray(XMLTokener) - Static method in class org.json.JSONML
Convert a well-formed (but not necessarily valid) XML string into a JSONArray using the JsonML transform.
toJSONArray(JSONArray) - Method in class org.json.JSONObject
Produce a JSONArray containing the values of the members of this JSONObject.
toJSONObject(String) - Static method in class org.json.Cookie
Convert a cookie specification string into a JSONObject.
toJSONObject(String) - Static method in class org.json.CookieList
Convert a cookie list into a JSONObject.
toJSONObject(String) - Static method in class org.json.HTTP
Convert an HTTP header string into a JSONObject.
toJSONObject(JSONArray) - Method in class org.json.JSONArray
Produce a JSONObject by combining a JSONArray of names with the values of this JSONArray.
toJSONObject(XMLTokener) - Static method in class org.json.JSONML
Convert a well-formed (but not necessarily valid) XML string into a JSONObject using the JsonML transform.
toJSONObject(String) - Static method in class org.json.JSONML
Convert a well-formed (but not necessarily valid) XML string into a JSONObject using the JsonML transform.
toJSONObject(String) - Static method in class org.json.XML
Convert a well-formed (but not necessarily valid) XML string into a JSONObject.
toJSONString() - Method in interface org.json.JSONString
The toJSONString method allows a class to produce its own JSON serialization.
token - Variable in class org.resurgence.actor.TokenCounter
The input port, which contains all tokens.
token - Variable in class ptolemy.actor.lib.TimeDelay.PendingEvent
The token associated with the event.
token - Variable in class ptolemy.data.expr.MatrixParser
Current token.
token - Variable in class ptolemy.data.expr.PtParser
Current token.
Token - Class in ptolemy.data.expr
Describes the input token stream.
Token() - Constructor for class ptolemy.data.expr.Token
No-argument constructor
Token(int) - Constructor for class ptolemy.data.expr.Token
Constructs a new token for the specified Image.
Token(int, String) - Constructor for class ptolemy.data.expr.Token
Constructs a new token for the specified Image and Kind.
Token - Class in ptolemy.data
Token is the base class for data capsules.
Token() - Constructor for class ptolemy.data.Token
Create a Token.
Token - Class in ptolemy.moml.unit
Describes the input token stream.
Token() - Constructor for class ptolemy.moml.unit.Token
No-argument constructor
Token(int) - Constructor for class ptolemy.moml.unit.Token
Constructs a new token for the specified Image.
Token(int, String) - Constructor for class ptolemy.moml.unit.Token
Constructs a new token for the specified Image and Kind.
token - Variable in class ptolemy.moml.unit.UParser
Current token.
token_source - Variable in class ptolemy.data.expr.MatrixParser
Generated Token Manager.
token_source - Variable in class ptolemy.data.expr.PtParser
Generated Token Manager.
token_source - Variable in class ptolemy.moml.unit.UParser
Generated Token Manager.
tokenConsumptionRate - Variable in class ptolemy.domains.sdf.kernel.SDFIOPort
Deprecated.
The number of tokens consumed on this port each firing.
TokenConverter - Class in org.kepler.webview.data
 
TokenConverter() - Constructor for class org.kepler.webview.data.TokenConverter
 
TokenCounter - Class in org.resurgence.actor
This actor consumes and counts all tokens from the input port and prints out their overall number.
TokenCounter(CompositeEntity, String) - Constructor for class org.resurgence.actor.TokenCounter
Construct a TokenCounter with the given container and name.
TokenDataSource - Class in org.kepler.stratosphere.io.input
A data source for Ptolemy tokens.
TokenDataSource(Class<? extends TokenInputFormat>, String) - Constructor for class org.kepler.stratosphere.io.input.TokenDataSource
 
TokenEffigy - Class in ptolemy.actor.gui
An effigy for a file that contains one or more tokens, one per line, represented as text in the expression language.
TokenEffigy(Workspace) - Constructor for class ptolemy.actor.gui.TokenEffigy
Create a new effigy in the specified workspace with an empty string for its name.
TokenEffigy(CompositeEntity, String) - Constructor for class ptolemy.actor.gui.TokenEffigy
Create a new effigy in the given directory with the given name.
TokenEffigy.Factory - Class in ptolemy.actor.gui
A factory for creating new effigies.
TokenFrame(Time, List<ThreadedComposite.QueuedToken>, ThreadedComposite.TokenFrame.FrameType) - Constructor for class ptolemy.actor.lib.hoc.ThreadedComposite.TokenFrame
Construct a TokenFrame.
TokenGotEvent - Class in ptolemy.actor
Deprecated.
Use IOPortEvent instead.
TokenGotEvent(IOPort, int, Token[], int, boolean) - Constructor for class ptolemy.actor.TokenGotEvent
Deprecated.
Create a new token got event with the given parameters.
TokenGotEvent(IOPort, int, Token, boolean) - Constructor for class ptolemy.actor.TokenGotEvent
Deprecated.
Create a new token got event with the given parameters.
tokenGotEvent(TokenGotEvent) - Method in interface ptolemy.actor.TokenGotListener
Deprecated.
Report an that a token was received with get().
TokenGotListener - Interface in ptolemy.actor
Deprecated.
Use IOPortEventListener instead.
tokenImage - Static variable in interface ptolemy.data.expr.MatrixParserConstants
Literal token values.
tokenImage - Variable in exception ptolemy.data.expr.ParseException
This is a reference to the "tokenImage" array of the generated parser within which the parse error occurred.
tokenImage - Static variable in interface ptolemy.data.expr.PtParserConstants
Literal token values.
tokenImage - Variable in exception ptolemy.moml.unit.ParseException
This is a reference to the "tokenImage" array of the generated parser within which the parse error occurred.
tokenImage - Static variable in interface ptolemy.moml.unit.UParserConstants
Literal token values.
tokenInitProduction - Variable in class ptolemy.domains.sdf.kernel.SDFIOPort
Deprecated.
The number of tokens produced on this port during initialization.
TokenInputFormat - Class in org.kepler.hadoop.io.input
Hadoop InputFormat for Ptolemy tokens.
TokenInputFormat() - Constructor for class org.kepler.hadoop.io.input.TokenInputFormat
 
TokenInputFormat - Class in org.kepler.stratosphere.io.input
An input format for Ptolemy tokens.
TokenInputFormat() - Constructor for class org.kepler.stratosphere.io.input.TokenInputFormat
 
TokenInputSplit - Class in org.kepler.hadoop.io.input
Hadoop InputSplit for Ptolemy tokens.
TokenInputSplit() - Constructor for class org.kepler.hadoop.io.input.TokenInputSplit
No argument constructor is required.
TokenInputSplit(Token) - Constructor for class org.kepler.hadoop.io.input.TokenInputSplit
Create a TokenInputSplit for a token.
TokenInputSplit - Class in org.kepler.stratosphere.io.input
An input split for Ptolemy tokens.
TokenInputSplit() - Constructor for class org.kepler.stratosphere.io.input.TokenInputSplit
A constructor that takes no arguments is required.
TokenInputSplit(int, Token) - Constructor for class org.kepler.stratosphere.io.input.TokenInputSplit
Create a new TokenInputSplit.
tokenizeForExec(String) - Static method in class ptolemy.util.StringUtilities
Tokenize a String to an array of Strings for use with Runtime.exec(String []).
TokenizeLine() - Constructor for class org.kepler.spark.examples.JavaWordCount.TokenizeLine
 
TokenMapper - Class in org.kepler.dataproxy.datasource.opendap
 
TokenMapper() - Constructor for class org.kepler.dataproxy.datasource.opendap.TokenMapper
 
TokenMgrError - Error in ptolemy.data.expr
Token Manager Error.
TokenMgrError() - Constructor for error ptolemy.data.expr.TokenMgrError
No arg constructor.
TokenMgrError(String, int) - Constructor for error ptolemy.data.expr.TokenMgrError
Constructor with message and reason.
TokenMgrError(boolean, int, int, int, String, char, int) - Constructor for error ptolemy.data.expr.TokenMgrError
Full Constructor.
TokenMgrError - Error in ptolemy.moml.unit
Token Manager Error.
TokenMgrError() - Constructor for error ptolemy.moml.unit.TokenMgrError
No arg constructor.
TokenMgrError(String, int) - Constructor for error ptolemy.moml.unit.TokenMgrError
Constructor with message and reason.
TokenMgrError(boolean, int, int, int, String, char, int) - Constructor for error ptolemy.moml.unit.TokenMgrError
Full Constructor.
TokenOutputCommitter() - Constructor for class org.kepler.hadoop.io.output.TokenOutputFormat.TokenOutputCommitter
 
TokenOutputFormat - Class in org.kepler.hadoop.io.output
Hadoop OutputFormat for Ptolemy tokens.
TokenOutputFormat() - Constructor for class org.kepler.hadoop.io.output.TokenOutputFormat
 
TokenOutputFormat - Class in org.kepler.stratosphere.io.output
An output format for Ptolemy tokens.
TokenOutputFormat() - Constructor for class org.kepler.stratosphere.io.output.TokenOutputFormat
 
TokenOutputFormat.AbstractConfigBuilder<T> - Class in org.kepler.stratosphere.io.output
Abstract builder used to set parameters to the input format's configuration in a fluent way.
TokenOutputFormat.ConfigBuilder - Class in org.kepler.stratosphere.io.output
A builder used to set parameters to the input format's configuration in a fluent way.
TokenOutputFormat.TokenOutputCommitter - Class in org.kepler.hadoop.io.output
 
tokenProductionRate - Variable in class ptolemy.domains.sdf.kernel.SDFIOPort
Deprecated.
The number of tokens produced on this port each firing.
TokenReader - Class in ptolemy.actor.lib.io
Deprecated.
Use LineReader followed by ExpressionToToken.
TokenReader(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.io.TokenReader
Deprecated.
Construct an actor with a name and a container.
TokenRecordReader - Class in org.kepler.hadoop.io.input
Hadoop RecordReader for Ptolemy tokens.
TokenRecordReader() - Constructor for class org.kepler.hadoop.io.input.TokenRecordReader
 
TokenRecordWriter - Class in org.kepler.hadoop.io.output
Hadoop RecordWriter for Ptolemy tokens.
TokenRecordWriter(Configuration) - Constructor for class org.kepler.hadoop.io.output.TokenRecordWriter
Create a new TokenRecordWriter with a set of parameters.
tokens - Variable in class ptolemy.actor.lib.hoc.ThreadedComposite.TokenFrame
A list of tokens.
TokenSentEvent - Class in ptolemy.actor
Deprecated.
Use IOPortEvent instead.
TokenSentEvent(IOPort, int, Token[], int) - Constructor for class ptolemy.actor.TokenSentEvent
Deprecated.
Create a new token sent event with the given parameters.
TokenSentEvent(IOPort, int, Token) - Constructor for class ptolemy.actor.TokenSentEvent
Deprecated.
Create a new token sent event with the given parameters.
TokenSentEvent(IOPort, Token) - Constructor for class ptolemy.actor.TokenSentEvent
Deprecated.
Create a new token sent event with the given parameters.
TokenSentEvent(IOPort, Token[], int) - Constructor for class ptolemy.actor.TokenSentEvent
Deprecated.
Create a new token sent event with the given parameters.
tokenSentEvent(TokenSentEvent) - Method in interface ptolemy.actor.TokenSentListener
Deprecated.
Report an that a token was sent.
TokenSentListener - Interface in ptolemy.actor
Deprecated.
Use IOPortEventListener instead.
TokenSink - Class in org.kepler.spark.operator
A data sink that writes to Ptolemy tokens.
TokenSink(String, String) - Constructor for class org.kepler.spark.operator.TokenSink
Create a new TokenSink.
TokenSource - Class in org.kepler.spark.operator
An data source that reads Ptolemy tokens.
TokenSource(ArrayToken, String) - Constructor for class org.kepler.spark.operator.TokenSource
Create a new TokenSource.
TokenTableau - Class in ptolemy.actor.gui
A tableau representing one or more tokens in a top-level window with a text editor.
TokenTableau(Effigy, String) - Constructor for class ptolemy.actor.gui.TokenTableau
Construct a new tableau for the model represented by the given effigy.
TokenTableau(Effigy, String, TableauFrame) - Constructor for class ptolemy.actor.gui.TokenTableau
Construct a new tableau for the model represented by the given effigy, using the specified frame.
TokenTableau.Factory - Class in ptolemy.actor.gui
A factory that creates a token tableau.
TokenToExpression - Class in ptolemy.actor.lib.conversions
This actor reads a token from the input port and outputs a string token whose value is an expression that can be parsed to yield the input token.
TokenToExpression(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.conversions.TokenToExpression
Construct an actor with the given container and name.
TokenToJSON - Class in ptolemy.actor.lib.conversions.json
An actor that converts a Token into a StringToken containing JSON-formatted data.
TokenToJSON(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.conversions.json.TokenToJSON
Construct a TokenToJSON actor with the given container and name.
TokenToSeparateChannels - Class in org.geon
Transmit each received token to a different consecutive output channel.
TokenToSeparateChannels(CompositeEntity, String) - Constructor for class org.geon.TokenToSeparateChannels
Construct an actor with the given container and name.
TokenToString - Class in org.geon
Return the string representation of the input token.
TokenToString(CompositeEntity, String) - Constructor for class org.geon.TokenToString
Construct an actor with the given container and name.
TokenUtil - Class in org.kepler.reporting.rio.util
 
TokenUtil() - Constructor for class org.kepler.reporting.rio.util.TokenUtil
 
TokenUtilities - Class in ptolemy.data
Various methods and fields that are used from within the various token classes.
TokenUtilities() - Constructor for class ptolemy.data.TokenUtilities
 
TokenUtilitiesTest - Class in ptolemy.data.test
Multiply two doubles to exercise the exponentialFormat field.
TokenUtilitiesTest() - Constructor for class ptolemy.data.test.TokenUtilitiesTest
 
tokenValue - Variable in class org.kepler.provenance.sql.SQLRecordingV8.TokenInfo
 
TokenWritable - Class in org.kepler.hadoop.io
Hadoop Writable for Ptolemy tokens.
TokenWritable(Token) - Constructor for class org.kepler.hadoop.io.TokenWritable
Create a new TokenWritable for a token.
tolerance - Variable in class ptolemy.actor.lib.logic.Comparator
The tolerance for the comparison.
tolerance - Variable in class ptolemy.actor.lib.NonStrictTest
A double specifying how close the input has to be to the value given by correctValues.
tolerance - Variable in class ptolemy.actor.lib.PublisherNonStrictTest
A double specifying how close the input has to be to the value given by correctValues.
toLinear(int) - Method in class ptolemy.media.Audio
Convert the audio data to linear integer encoding (from mu-law).
toLongArray(double[]) - Static method in class ptolemy.math.DoubleArrayMath
Return a new array that is formed by converting the doubles in the argument array to longs.
toLongArray(float[]) - Static method in class ptolemy.math.FloatArrayMath
Return a new array that is formed by converting the floats in the argument array to longs.
toLongArray(int[]) - Static method in class ptolemy.math.IntegerArrayMath
Return a new array that is formed by converting the ints in the argument array to longs.
toLongMatrix(double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new matrix that is formed by converting the doubles in the argument matrix to longs.
toLongMatrix(float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Return a new matrix that is formed by converting the floats in the argument matrix to longs.
toLongMatrix(int[][]) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new matrix that is formed by converting the ints in the argument matrix to longs.
toMatrixFromArray(Complex[], int, int) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new matrix of complex numbers that is initialized from a 1-D array.
toMatrixFromArray(double[], int, int) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new matrix of doubles that is initialized from a 1-D array.
toMatrixFromArray(float[], int, int) - Static method in class ptolemy.math.FloatMatrixMath
Return a new matrix of floats that is initialized from a 1-D array.
toMatrixFromArray(Fraction[], int, int) - Static method in class ptolemy.math.FractionMatrixMath
Return a new matrix of Fractions that is initialized from a 1-D array.
toMatrixFromArray(int[], int, int) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new matrix of ints that is initialized from a 1-D array.
toMatrixFromArray(long[], int, int) - Static method in class ptolemy.math.LongMatrixMath
Return a new matrix of longs that is initialized from a 1-D array.
toObject(Object) - Method in interface ptolemy.graph.mapping.Mapping
Return the object associated with the given object in the mapping.
toObject(Object) - Method in class ptolemy.graph.mapping.ToDoubleMapMapping
Return the object associated with the given object.
toObject(Object) - Method in class ptolemy.graph.mapping.ToIntMapMapping
 
ToolBar - Class in ptolemy.actor.gui.properties
A GUI property that encloses a JToolBar component.
ToolBar(NamedObj, String) - Constructor for class ptolemy.actor.gui.properties.ToolBar
Construct a GUI property with the given name contained by the specified entity.
ToolBar(NamedObj, String, JToolBar) - Constructor for class ptolemy.actor.gui.properties.ToolBar
Construct a GUI property with the given name contained by the specified entity with the given Java Swing component.
ToolBar(NamedObj, String, JToolBar, Object) - Constructor for class ptolemy.actor.gui.properties.ToolBar
Construct a GUI property with the given name contained by the specified entity with the given Java Swing component and the given layout constraint.
ToolBar(NamedObj, String, Object) - Constructor for class ptolemy.actor.gui.properties.ToolBar
Construct a GUI property with the given name contained by the specified entity with the given layout constraint.
TOOLBAR_TYPE - Static variable in class ptolemy.vergil.toolbox.FigureAction
When the action was fired from a toolbar icon.
ToolbarUtilities - Class in org.kepler.tagging.gui
Utility functions for adding items to the toolbar, taken from diva.gui.GUIUtilities and modified to add 'toolbar buttons' to non-JToolBar components (eg., for if there are containers in the toolbar).
ToolbarUtilities() - Constructor for class org.kepler.tagging.gui.ToolbarUtilities
 
tooltip - Variable in class ptolemy.actor.gui.properties.Button
Tooltip for the button.
top() - Method in class com.jgoodies.forms.factories.Borders.EmptyBorder
Returns this border's top size.
TOP - Static variable in class com.jgoodies.forms.layout.CellConstraints
Put the component in the top.
TOP - Static variable in class com.jgoodies.forms.layout.RowSpec
By default put the components in the top.
top - Variable in class org.kepler.gis.actor.SplitBoundingBox
Deprecated.
The latitude of the top of the bounding box.
TOP - Static variable in class org.mlc.swing.layout.LayoutConstraintsManager
 
top - Variable in class ptolemy.actor.lib.Limiter
The top of the limiting range.
TOP - Static variable in class ptolemy.data.type.ObjectType
The top element among all ObjectTypes.
top() - Method in interface ptolemy.graph.CPO
Return the top element of this CPO.
top() - Method in class ptolemy.graph.DirectedAcyclicGraph
Return the top element of this CPO.
Top - Class in ptolemy.gui
This is a top-level window with a menubar and an optional status bar.
Top() - Constructor for class ptolemy.gui.Top
Construct an empty top-level frame with the default status bar.
Top(StatusBar) - Constructor for class ptolemy.gui.Top
Construct an empty top-level frame with the specified status bar.
TOP_PARAMETERS - Static variable in class ptolemy.actor.gui.ModelPane
Indicator to include top-level parameters in the controls.
TOP_REPORTING_LISTENER_NAME - Static variable in class org.kepler.reporting.ReportingListener
 
toParenthesisString(Map, String) - Method in class ptolemy.graph.sched.Firing
Print the firing in a parenthesis style.
toParenthesisString(Map, String) - Method in class ptolemy.graph.sched.Schedule
Print the schedule in a nested parenthesis style.
toParenthesisString(Map) - Method in class ptolemy.graph.sched.ScheduleElement
Print the schedule in a nested parenthesis style and set character 'space' as the delimiter.
toParenthesisString(Map, String) - Method in class ptolemy.graph.sched.ScheduleElement
Print the schedule in a nested parenthesis style.
topComponent - Variable in class ptolemy.actor.gui.run.PtolemyFormEditor
The top level component.
topEffigy() - Method in class ptolemy.actor.gui.Effigy
Return the top-level effigy that (deeply) contains this one.
TopFactory(NamedObj, String) - Constructor for class ptolemy.actor.gui.RunTableau.TopFactory
Create a factory with the given name and container.
TopFactory(NamedObj, String) - Constructor for class ptolemy.actor.gui.test.SimpleTableau.TopFactory
Create a factory with the given name and container.
toplevel() - Method in interface org.kepler.webview.actor.WebViewable
 
toplevel() - Method in class ptolemy.kernel.util.NamedObj
Return the top level of the containment hierarchy.
toplevel() - Method in class ptolemy.moml.MoMLSimpleApplication
Return the toplevel.
toplevel - Variable in class ptolemy.moml.test.UnloadModelTest
The toplevel model that is created and then destroyed.
TopLevelCurrentTime - Class in ptolemy.actor.lib
Deprecated.
Use CurrentTime with useLocalTime unchecked.
TopLevelCurrentTime(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.TopLevelCurrentTime
Deprecated.
Construct an actor with the given container and name.
topObjectsCreated() - Method in class ptolemy.moml.MoMLParser
Get the top objects list.
topologicalSort() - Method in class ptolemy.actor.util.CausalityInterfaceForComposites
Return a list of the actors deeply contained within the associated composite actor sorted by actor depth.
topologicalSort() - Method in class ptolemy.graph.DirectedAcyclicGraph
Topological sort the whole graph.
topologicalSort(Object[]) - Method in class ptolemy.graph.DirectedAcyclicGraph
Sort the given node weights in their topological order.
topologicalSort(Collection) - Method in class ptolemy.graph.DirectedGraph
Sort a collection of graph nodes in their topological order as long as no two of the given nodes are mutually reachable by each other.
topologicalSort(Object[]) - Method in class ptolemy.graph.DirectedGraph
Sort the given nodes in their topological order as long as no two of the given nodes are mutually reachable by each other (weights version).
TopPack - Interface in ptolemy.actor.gui
An interface that allows alternate pack() methods to be called from TableauFrame which allows for functionality such as alternate menu systems in Vergil.
topPadding - Static variable in class org.geon.TernaryDiagram
 
TopProvenanceRecorderFilter - Class in org.kepler.moml.filter
A MoML filter that adds the default provenance recorder to the top level workflow container.
TopProvenanceRecorderFilter() - Constructor for class org.kepler.moml.filter.TopProvenanceRecorderFilter
 
TopReportingListenerFilter - Class in org.kepler.moml.filter
A MoML filter that adds the reporting listener to the top level workflow container.
TopReportingListenerFilter() - Constructor for class org.kepler.moml.filter.TopReportingListenerFilter
 
TopTest - Class in ptolemy.gui.test
Test driver for ptolemy.gui.Top.
TopTest() - Constructor for class ptolemy.gui.test.TopTest
 
topVariables() - Method in class ptolemy.graph.InequalitySolver
Return an Iterator of the variables whose current values are the top of the underlying CPO.
toShortString() - Method in class com.jgoodies.forms.layout.CellConstraints
Returns a short string representation of this constraints object.
toShortString(FormLayout) - Method in class com.jgoodies.forms.layout.CellConstraints
Returns a short string representation of this constraints object.
toShortString() - Method in class com.jgoodies.forms.layout.FormSpec
Returns a string representation of this form specification.
toSortedString(Collection, boolean) - Static method in class ptolemy.graph.test.Utilities
Given a collection, return a string representation of the collection.
toString() - Method in class com.jgoodies.forms.layout.CellConstraints.Alignment
Returns this Alignment's name.
toString() - Method in class com.jgoodies.forms.layout.CellConstraints
Constructs and returns a string representation of this constraints object.
toString() - Method in class com.jgoodies.forms.layout.ConstantSize
Returns a string representation of this size object.
toString() - Method in class com.jgoodies.forms.layout.ConstantSize.Unit
 
toString() - Method in class com.jgoodies.forms.layout.FormSpec.DefaultAlignment
Returns this Alignment's name.
toString() - Method in class com.jgoodies.forms.layout.FormSpec
Returns a string representation of this form specification.
toString() - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.SearchQuery
toString
toString() - Method in class org.ecoinformatics.seek.querybuilder.DBSelectTableModelItem
Returns the name as the textual rendering (the name)
toString() - Method in class org.ecoinformatics.seek.querybuilder.DBTableField
Returns the actual name or DBUIUtils.ALL_FIELDS if no name
toString(boolean) - Method in class org.ecoinformatics.seek.querybuilder.DBWhereCondition
Converts the entire condition to a string
toString() - Method in class org.ecoinformatics.seek.querybuilder.DBWhereCondition
Converts the entire condition to a string
toString(boolean) - Method in interface org.ecoinformatics.seek.querybuilder.DBWhereIFace
Returns string
toString() - Method in class org.ecoinformatics.seek.querybuilder.DBWhereListCellBase
 
toString(boolean) - Method in class org.ecoinformatics.seek.querybuilder.DBWhereListCellBase
 
toString() - Method in class org.ecoinformatics.seek.querybuilder.DBWhereOperator
Returns name
toString() - Method in class org.geon.DBConnectionToken.DBConnectionType
Return the string representation of this type.
toString() - Method in class org.geon.DBConnectionToken
Return the value of this token as a string that can be parsed by the expression language to recover a token with the same value.
toString(JSONArray) - Static method in class org.json.CDL
Produce a comma delimited text from a JSONArray of JSONObjects.
toString(JSONArray, JSONArray) - Static method in class org.json.CDL
Produce a comma delimited text from a JSONArray of JSONObjects using a provided list of names.
toString(JSONObject) - Static method in class org.json.Cookie
Convert a JSONObject into a cookie specification string.
toString(JSONObject) - Static method in class org.json.CookieList
Convert a JSONObject into a cookie list.
toString(JSONObject) - Static method in class org.json.HTTP
Convert a JSONObject into an HTTP header.
toString() - Method in class org.json.JSONArray
Make a JSON text of this JSONArray.
toString(int) - Method in class org.json.JSONArray
Make a prettyprinted JSON text of this JSONArray.
toString(JSONArray) - Static method in class org.json.JSONML
Reverse the JSONML transformation, making an XML text from a JSONArray.
toString(JSONObject) - Static method in class org.json.JSONML
Reverse the JSONML transformation, making an XML text from a JSONObject.
toString() - Method in class org.json.JSONObject
Make a JSON text of this JSONObject.
toString(int) - Method in class org.json.JSONObject
Make a prettyprinted JSON text of this JSONObject.
toString() - Method in class org.json.JSONStringer
Return the JSON text.
toString() - Method in class org.json.JSONTokener
Make a printable string of this JSONTokener.
toString(Object) - Static method in class org.json.XML
Convert a JSONObject into a well-formed, element-normal XML string.
toString(Object, String) - Static method in class org.json.XML
Convert a JSONObject into a well-formed, element-normal XML string.
toString() - Method in class org.kepler.authentication.Domain
 
toString() - Method in class org.kepler.bio.util.BlastTabularResult
 
toString() - Method in class org.kepler.CommandLineArgument
Get a string representation of the command line argument.
toString() - Method in class org.kepler.configuration.ConfigurationNamespace
return namespace as a String
toString(boolean) - Method in class org.kepler.configuration.ConfigurationProperty
 
toString() - Method in class org.kepler.configuration.ConfigurationProperty
return a string representation of this property
toString(boolean, boolean, boolean, boolean) - Method in class org.kepler.configuration.ConfigurationProperty
returns a string representation of this property
toString() - Method in class org.kepler.gis.data.BoundingBoxToken.BoundingBoxType
 
toString() - Method in class org.kepler.gis.data.BoundingBoxToken
Return a string representation of the bounding box.
toString() - Method in class org.kepler.gis.data.GISToken.GISType
 
toString() - Method in class org.kepler.gis.data.RasterToken.RasterType
 
toString() - Method in class org.kepler.gis.data.RasterToken
Return a String representation of the DateToken.
toString() - Method in class org.kepler.gis.data.VectorToken
Return a String representation of the VectorToken.
toString() - Method in class org.kepler.gis.data.VectorToken.VectorType
 
toString() - Method in class org.kepler.gui.KeplerXMLIcon
Return a string representing this Icon.
toString() - Method in class org.kepler.gui.LibrarySearchResults
return a formatted string representation of this object
toString() - Method in class org.kepler.io.FileInfo
 
toString() - Method in enum org.kepler.job.JobStatusCode
 
toString() - Method in class org.kepler.kar.karxml.KarXml.KarEntry
 
toString() - Method in class org.kepler.kar.karxml.KarXml
 
toString() - Method in class org.kepler.monitor.MonitoredStatus.PropertyTimer
 
toString() - Method in class org.kepler.objectmanager.ActorMetadata
return the moml xml representation of the actor.
toString(boolean, boolean, boolean) - Method in class org.kepler.objectmanager.ActorMetadata
return the moml xml representation of the actor.
toString() - Method in class org.kepler.objectmanager.cache.DataCacheObject
return a string representation of this datacacheobject
toString() - Method in class org.kepler.objectmanager.cache.LocalRepositoryManager.LocalRepository
Get the absolute path of the default root directory.
toString() - Method in class org.kepler.objectmanager.data.DataObjectDescription
Produce a string view of the item, just the name.
toString() - Method in class org.kepler.objectmanager.data.DataType
returns a string representation of this DataType
toString() - Method in class org.kepler.objectmanager.data.db.DSTableDef
Returns name of table as a string
toString() - Method in class org.kepler.objectmanager.library.LibItem
 
toString() - Method in class org.kepler.objectmanager.lsid.KeplerLSID
return a string representation of the lsid
toString() - Method in class org.kepler.objectmanager.repository.EcogridRepositoryResults
return a string rep of this object
toString() - Method in class org.kepler.objectmanager.repository.Repository
return a string rep of this object for debug purposes
toString() - Method in enum org.kepler.plotting.GraphProperty
 
toString() - Method in enum org.kepler.plotting.PointType
 
toString() - Method in class org.kepler.profiling.gui.ExecutionMonitorPanel.ActorInfo
 
toString() - Method in class org.kepler.provenance.IOPortRefillEvent
Return a string representation of this event.
toString() - Method in class org.kepler.provenance.ProvenanceEvent
Return a string representation of this event.
toString() - Method in class org.kepler.provenance.sql.SQLRecordingV8.TokenInfo
Get a string representation.
toString() - Method in class org.kepler.reporting.rio.DynamicReportItem
 
toString() - Method in class org.kepler.reporting.roml.ReportLayout
 
toString() - Method in class org.kepler.sms.Color
 
toString() - Method in class org.kepler.sms.gui.SemanticTypeBrowserSelectionEvent
 
toString() - Method in class org.kepler.sms.KeplerCompositeIOPort
 
toString() - Method in class org.kepler.sms.KeplerRefinementIOPort
 
toString() - Method in class org.kepler.sms.NamedOntClass
 
toString() - Method in class org.kepler.sms.NamedOntModel
 
toString() - Method in class org.kepler.sms.NamedOntProperty
 
toString() - Method in class org.kepler.sms.SemanticTypeManager
Constructs a string representation of this manager
toString() - Method in class org.kepler.ssh.SshEvent
Return a string representation of this event.
toString() - Method in class org.kepler.stratosphere.io.input.TokenInputSplit
Get a string representation of this split.
toString() - Method in class org.kepler.stratosphere.type.ByteArray
 
toString() - Method in class org.kepler.tagging.gui.CBItems.AddConceptCBItem
 
toString() - Method in class org.kepler.tagging.gui.CBItems.ExistingConceptCBItem
 
toString() - Method in class org.kepler.tagging.gui.CBItems.SeparatorCBItem
 
toString() - Method in class org.kepler.tagging.gui.CBItems.TagManagerCBItem
 
toString() - Method in class org.kepler.tagging.gui.CBItems.TruncatedExistingConceptCBItem
 
toString() - Method in class org.kepler.tagging.Range
 
toString() - Method in class org.kepler.tagging.TagEvent
 
toString() - Method in class org.kepler.tagging.Transition
 
toString() - Method in class org.kepler.tagging.WindowIdentifier
 
toString() - Method in class org.kepler.util.DelimitedReader
returns a string representation of the data
toString() - Method in enum org.kepler.util.RemoteStoreRunsTracker.TrackerRunAttribute
Get the name.
toString() - Method in class org.kepler.util.sql.Column
Get a string representation of the column.
toString() - Method in class org.kepler.util.sql.Table
Get a string representation of the table.
toString() - Method in enum org.kepler.util.WorkflowRun.RunAttribute
Get the name.
toString() - Method in class org.kepler.util.WorkflowRun
 
toString() - Method in enum org.kepler.util.WorkflowRun.type
Get the name.
toString() - Method in class org.mlc.swing.layout.ButtonBarComponentBuilder
 
toString() - Method in class org.mlc.swing.layout.DefaultComponentBuilder
 
toString() - Method in class org.mlc.swing.layout.JListComponentBuilder
 
toString() - Method in class org.mlc.swing.layout.JTableComponentBuilder
 
toString() - Method in class org.mlc.swing.layout.JToolBarComponentBuilder
 
toString() - Method in class org.mlc.swing.layout.JTreeComponentBuilder
 
toString() - Method in class org.mlc.swing.layout.SeparatorComponentBuilder
 
toString() - Method in class org.ptolemy.commons.FutureValue
 
toString() - Method in class org.ptolemy.commons.ThreeDigitVersionSpecification
Produce a string representation that is itself valid again to be parsed as a VersionSpecification.
toString() - Method in class org.sdm.spa.actors.piw.viz.Sequence
 
toString() - Method in class org.sdm.spa.actors.transport.FileCopierBase.CopyResult
 
toString() - Method in class org.sdm.spa.actors.transport.vo.ConnectionDetails
 
toString() - Method in class org.sdm.spa.gui.XMLUIP.AdapterNode
 
toString() - Method in class org.sdm.spa.util.ActorInspector.AttributeInfo
 
toString() - Method in class org.sdm.spa.util.ActorInspector.PortInfo
 
toString() - Method in class ptolemy.actor.AbstractReceiver
Return the class name and the full name of the object, with syntax "className {fullName}".
toString() - Method in class ptolemy.actor.FiringEvent.FiringEventType
Return a string description of this event type.
toString() - Method in class ptolemy.actor.FiringEvent
Return a string representation of this event.
toString() - Method in class ptolemy.actor.gui.properties.ComboBox.Item
Return the display name of this item, or its name if the display name is not specified.
toString() - Method in class ptolemy.actor.IOPortEvent
Return a string representation of this event.
toString() - Method in class ptolemy.actor.Manager.State
Print out the current state.
toString() - Method in class ptolemy.actor.sched.Firing
Output a string representation of this Firing.
toString() - Method in class ptolemy.actor.sched.Schedule
Output a string representation of this Schedule.
toString() - Method in class ptolemy.actor.TokenGotEvent
Deprecated.
Return a string representation of this event.
toString() - Method in class ptolemy.actor.TokenSentEvent
Deprecated.
Return a string representation of this event.
toString() - Method in class ptolemy.actor.TypeEvent
Return a string description for this type change.
toString() - Method in class ptolemy.actor.util.BooleanDependency
Return a string representation in the form "BooleanDependency(value)", where value is "true" or "false".
toString() - Method in class ptolemy.actor.util.DefaultCausalityInterface
Return a description of the causality interfaces.
toString() - Method in class ptolemy.actor.util.GLBFunction
Provide a more descriptive string representation.
toString() - Method in class ptolemy.actor.util.RealDependency
Return a string representation in the form "RealDependency(value)".
toString() - Method in class ptolemy.actor.util.SuperdenseDependency
Return a string representation in the form "SuperdenseDependency(_time, _index)".
toString() - Method in class ptolemy.actor.util.SuperdenseTime
Return a description of this superdense time object.
toString() - Method in class ptolemy.actor.util.Time
Return the string representation of this time object.
toString() - Method in class ptolemy.actor.util.TimedEvent
Display timeStamp and contents.
toString() - Method in class ptolemy.actor.util.TotallyOrderedSet
Return a string that consists of the contents of the elements in the set.
toString() - Method in class ptolemy.data.ActorToken
Return the value of this token as a string that can be parsed by the expression language to recover a token with the same value.
toString() - Method in class ptolemy.data.ArrayToken
Return the value of this token as a string that can be parsed by the expression language to recover a token with the same value.
toString() - Method in class ptolemy.data.AWTImageToken
Return a description of the token.
toString() - Method in class ptolemy.data.BooleanToken
Return the value of this token as a string that can be parsed by the expression language to recover a token with the same value.
toString() - Method in class ptolemy.data.ComplexToken
Return the value of this token as a string that can be parsed by the expression language to recover a token with the same value.
toString() - Method in class ptolemy.data.DateToken
Return a String representation of the DateToken.
toString() - Method in class ptolemy.data.DoubleToken
Return the value of this token as a string that can be parsed by the expression language to recover a token with the same value.
toString() - Method in class ptolemy.data.EventToken
Return the value of this token as a string that can be parsed by the expression language to recover a token with the same value.
toString() - Method in class ptolemy.data.expr.ASTPtLeafNode
Return a string representation
toString() - Method in class ptolemy.data.expr.ASTPtRootNode
Return the string value of this node.
toString(String) - Method in class ptolemy.data.expr.ASTPtRootNode
Return the prefix, followed by the string value of this node.
toString() - Method in class ptolemy.data.expr.CachedMethod.ArgumentConversion
Return a string representation of this conversion.
toString() - Method in class ptolemy.data.expr.CachedMethod
Return a string representation.
toString() - Method in class ptolemy.data.expr.CachedMethod.TypeArgumentConversion
Return a string representation of this conversion.
toString() - Method in class ptolemy.data.expr.ExpressionFunction
Return a string representation of this function.
toString() - Method in class ptolemy.data.expr.SimpleNode
 
toString(String) - Method in class ptolemy.data.expr.SimpleNode
 
toString() - Method in class ptolemy.data.expr.Token
Returns the image.
toString() - Method in class ptolemy.data.expr.Variable
Return a string representation of the current evaluated variable value.
toString() - Method in class ptolemy.data.FixToken
Return the value of this token as a string that can be parsed by the expression language to recover a token with the same value.
toString() - Method in class ptolemy.data.FloatToken
Return the value of this token as a string that can be parsed by the expression language to recover a token with the same value.
toString() - Method in interface ptolemy.data.Function
Return a string representation.
toString() - Method in class ptolemy.data.FunctionToken
Return a String representation of this function.
toString() - Method in class ptolemy.data.IntToken
Return the value of this token as a string that can be parsed by the expression language to recover a token with the same value.
toString() - Method in class ptolemy.data.LongToken
Return the value of this token as a string that can be parsed by the expression language to recover a token with the same value.
toString() - Method in class ptolemy.data.MatrixToken
Return the value of this token as a string that can be parsed by the expression language to recover a token with the same value.
toString() - Method in class ptolemy.data.ObjectToken
Return the value of this token as a string.
toString() - Method in class ptolemy.data.OrderedRecordToken
Return the value of this token as a string.
toString() - Method in class ptolemy.data.PetiteToken
Return the value of this token as a string that can be parsed by the expression language to recover a token with the same value.
toString() - Method in class ptolemy.data.RecordToken
Return the value of this token as a string.
toString() - Method in class ptolemy.data.ShortToken
Return the value of this token as a string that can be parsed by the expression language to recover a token with the same value.
toString() - Method in class ptolemy.data.SmoothToken
Return the value of this token as a string that can be parsed by the expression language to recover a token with the same value and derivatives.
toString() - Method in class ptolemy.data.StringToken
Return the value of this Token as a string.
toString() - Method in class ptolemy.data.Token
Return the value of this token as a string that can be parsed by the expression language to recover a token with the same value.
toString() - Method in class ptolemy.data.TupleToken
Return the value of this token as a string that can be parsed by the expression language to recover a token with the same value.
toString() - Method in class ptolemy.data.type.ActorType
Return the string representation of this type.
toString() - Method in class ptolemy.data.type.ArrayType
Return the string representation of this type.
toString() - Method in class ptolemy.data.type.BaseType
Return the string representation of this type.
toString() - Method in class ptolemy.data.type.FixType
Return the string representation of this type.
toString() - Method in class ptolemy.data.type.FunctionType
Return the string representation of this type.
toString() - Method in class ptolemy.data.type.MatrixType
Return the string representation of this type.
toString() - Method in class ptolemy.data.type.MonotonicFunction
Override the base class to give a description of this term.
toString() - Method in class ptolemy.data.type.ObjectType
Return a string describing this object.
toString() - Method in class ptolemy.data.type.RecordType
Return the string representation of this type.
toString() - Method in class ptolemy.data.type.test.TestToken.TestType
Return the string representation of this type.
toString() - Method in class ptolemy.data.type.test.TestToken
Return the value of this token as a string that can be parsed by the expression language to recover a token with the same value.
toString() - Method in class ptolemy.data.type.TupleType
Return the string representation of this type.
toString() - Method in interface ptolemy.data.type.Type
Return the string representation of this type.
toString() - Method in class ptolemy.data.type.TypeConstant
Return a string representation of this term.
toString() - Method in class ptolemy.data.type.UnionType
Return the string representation of this type.
toString() - Method in class ptolemy.data.UnionToken
Return the value of this token as a string.
toString() - Method in class ptolemy.data.UnsignedByteToken
Return the value of this token as a string that can be parsed by the expression language to recover a token with the same value.
toString() - Method in class ptolemy.data.UnsizedArrayToken
Return the value of this token as a string that can be parsed by the expression language to recover a token with the same value.
toString() - Method in class ptolemy.data.XMLToken
Return the value of this Token as a string.
toString() - Method in class ptolemy.domains.ddf.kernel.ActorEnablingStatus
Return the string representation of this object.
toString() - Method in class ptolemy.domains.de.kernel.DECQEventQueue
Describe the Contents of the queue as a string.
toString() - Method in class ptolemy.domains.de.kernel.DEEvent
Return a description of the event, including the the tag, depth, and destination information.
toString() - Method in class ptolemy.domains.modal.kernel.AbstractActionsAttribute
Give a descriptive string.
toString() - Method in class ptolemy.domains.modal.kernel.ia.StatePair
Return a string representation of this pair.
toString() - Method in class ptolemy.domains.modal.kernel.StateEvent
Return a string representation of this event, which is the string "New state: name of state".
toString() - Method in class ptolemy.domains.pn.kernel.event.PNProcessEvent
Return the string value of this event.
toString() - Method in class ptolemy.domains.sdf.optimize.lib.DummyFrame
Provides a string representation of the object.
toString() - Method in class ptolemy.domains.sdf.optimize.lib.DummyReferenceToken
Provide a string representation of the token.
toString() - Method in class ptolemy.graph.analysis.AllPairShortestPathAnalysis
Return a description of the analysis and the associated analyzer.
toString() - Method in class ptolemy.graph.analysis.Analysis
Return a description of the analysis and the associated analyzer.
toString() - Method in interface ptolemy.graph.analysis.analyzer.Analyzer
Return a description of the analyzer.
toString() - Method in class ptolemy.graph.analysis.ClusterNodesAnalysis
Return a description of the analysis and the associated analyzer.
toString() - Method in class ptolemy.graph.analysis.CycleExistenceAnalysis
Return a description of the analysis and the associated analyzer.
toString() - Method in class ptolemy.graph.analysis.CycleMeanAnalysis
Return a description of the analysis and the associated analyzer.
toString() - Method in class ptolemy.graph.analysis.MaximumProfitToCostRatioAnalysis
Return a description of the analysis and the associated analyzer.
toString() - Method in class ptolemy.graph.analysis.MirrorTransformation
Return a description of the analysis and the associated analyzer.
toString() - Method in class ptolemy.graph.analysis.NegativeLengthCycleAnalysis
Return a description of the analysis and the associated analyzer.
toString() - Method in class ptolemy.graph.analysis.SelfLoopAnalysis
Return a description of the analysis and the associated analyzer.
toString() - Method in class ptolemy.graph.analysis.SingleSourceLongestPathAnalysis
Return a description of the analysis and the associated analyzer.
toString() - Method in class ptolemy.graph.analysis.SinkNodeAnalysis
Return a description of the analysis and the associated analyzer.
toString() - Method in class ptolemy.graph.analysis.SourceNodeAnalysis
Return a description of the analysis and the associated analyzer.
toString() - Method in class ptolemy.graph.analysis.strategy.AllEdgeSingleSourceLongestPathStrategy
Return a description of the analyzer.
toString() - Method in class ptolemy.graph.analysis.strategy.CachedStrategy
Return a description of the strategy.
toString() - Method in class ptolemy.graph.analysis.strategy.FloydWarshallAllPairShortestPathStrategy
Return a description of the analyzer.
toString() - Method in class ptolemy.graph.analysis.strategy.FloydWarshallCycleExistenceStrategy
Return a description of the analyzer.
toString() - Method in class ptolemy.graph.analysis.strategy.FloydWarshallNegativeLengthCycleStrategy
Return a description of the analyzer.
toString() - Method in class ptolemy.graph.analysis.strategy.FloydWarshallTransitiveClosureStrategy
Return a description of the analyzer.
toString() - Method in class ptolemy.graph.analysis.strategy.FloydWarshallZeroLengthCycleStrategy
Return a description of the analyzer.
toString() - Method in class ptolemy.graph.analysis.strategy.KarpCycleMeanStrategy
Return a description of the analyzer.
toString() - Method in class ptolemy.graph.analysis.strategy.ParhiMaximumProfitToCostRatioStrategy
Return a description of the analyzer.
toString() - Method in class ptolemy.graph.analysis.strategy.SelfLoopStrategy
Return a description of the analyzer.
toString() - Method in class ptolemy.graph.analysis.strategy.SinkNodeStrategy
Return a description of sink nodes.
toString() - Method in class ptolemy.graph.analysis.strategy.SourceNodeStrategy
Return a description of the analyzer.
toString() - Method in class ptolemy.graph.analysis.TransitiveClosureAnalysis
Return a description of the analysis and the associated analyzer.
toString() - Method in class ptolemy.graph.analysis.ZeroLengthCycleAnalysis
Return a description of the analysis and the associated analyzer.
toString(boolean) - Method in class ptolemy.graph.Edge
Return a string representation of the edge, optionally including information about the edge weight.
toString() - Method in class ptolemy.graph.Edge
Return a string representation of the edge, including information about the edge weight.
toString() - Method in class ptolemy.graph.Graph
Return a string representation of this graph.
toString() - Method in class ptolemy.graph.Inequality
Override the base class to describe the inequality.
toString(String, boolean) - Method in class ptolemy.graph.LabeledList
Return a string representation of this list, given a delimiter for separating successive elements, and a flag that indicates whether element labels should be included in the string.
toString() - Method in class ptolemy.graph.LabeledList
Return a string representation of this list with elements separated by new lines, and element labels omitted from the representation.
toString() - Method in class ptolemy.graph.mapping.MapMapping
Return a string representation of this MapMapping.
toString() - Method in class ptolemy.graph.Node
Return a string representation of the node.
toString() - Method in class ptolemy.graph.sched.Firing
Return a string representation of this Firing.
toString() - Method in class ptolemy.graph.sched.Schedule
Output a string representation of this Schedule.
toString() - Method in class ptolemy.graph.test.TestConstant
Override the base class to describe the constant.
toString() - Method in class ptolemy.graph.test.TestVariable
Override the base class to describe the variable.
toString() - Method in class ptolemy.gui.ExtensionFilenameFilter
Get the description and the registered extensions.
toString() - Method in class ptolemy.kernel.test.ExampleSystem
Return the results as a String.
toString() - Method in class ptolemy.kernel.undo.test.UndoActionTest
Return a string representation of this object.
toString() - Method in class ptolemy.kernel.undo.UndoActionsList
 
toString() - Method in interface ptolemy.kernel.util.DebugEvent
Return a string representation of this event.
toString() - Method in class ptolemy.kernel.util.Location
Get a description of the class, which is the class name and the location in parentheses.
toString() - Method in class ptolemy.kernel.util.NamedList
Return a string description of the list.
toString() - Method in class ptolemy.kernel.util.NamedObj
Return the class name and the full name of the object, with syntax "className {fullName}".
toString() - Method in class ptolemy.kernel.util.test.TestDebugEvent
Return the the name of the source
toString() - Method in class ptolemy.kernel.util.Workspace
Return a concise description of the object.
toString() - Method in class ptolemy.math.Complex
Return a string representation of this Complex.
toString(Complex) - Static method in class ptolemy.math.Complex
Return a string representation of the given Complex.
toString(Complex[]) - Static method in class ptolemy.math.ComplexArrayMath
Return a new String representing the array, formatted as in Java array initializers.
toString(Complex[], String, String, String) - Static method in class ptolemy.math.ComplexArrayMath
Return a new String representing the array, formatted specified starting with vectorBegin, where each successive element is separated by elementDelimiter and ending with vectorEnd.
toString(Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new String representing the matrix, formatted as in Java array initializers.
toString(Complex[][], String, String, String, String, String, String) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new String representing the matrix, formatted as specified by the ArrayStringFormat argument.
toString(double[]) - Static method in class ptolemy.math.DoubleArrayMath
Return a new String representing the array, formatted as in Java array initializers.
toString(double[], String, String, String) - Static method in class ptolemy.math.DoubleArrayMath
Return a new String representing the array, formatted as specified by the ArrayStringFormat argument.
toString(double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new String representing the matrix, formatted as in Java array initializers.
toString(double[][], String, String, String, String, String, String) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new String representing the matrix, formatted as specified by the ArrayStringFormat argument.
toString() - Method in class ptolemy.math.FixPoint
Return a string representation of this number.
toString() - Method in class ptolemy.math.FixPointQuantization
Return a string representing this quantization.
toString(float[]) - Static method in class ptolemy.math.FloatArrayMath
Return a new String representing the array, formatted as in Java array initializers.
toString(float[], String, String, String) - Static method in class ptolemy.math.FloatArrayMath
Return a new String representing the array, formatted as specified by the ArrayStringFormat argument.
toString(float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Return a new String representing the matrix, formatted as in Java array initializers.
toString(float[][], String, String, String, String, String, String) - Static method in class ptolemy.math.FloatMatrixMath
Return a new String representing the matrix, formatted as specified by the ArrayStringFormat argument.
toString() - Method in class ptolemy.math.Fraction
Convert the fraction to a readable string.
toString(Fraction[]) - Static method in class ptolemy.math.FractionArrayMath
Return a new String representing the array, formatted as in Java array initializers.
toString(Fraction[], String, String, String) - Static method in class ptolemy.math.FractionArrayMath
Return a new String representing the array, formatted as specified by the ArrayStringFormat argument.
toString(Fraction[][]) - Static method in class ptolemy.math.FractionMatrixMath
Return a new String representing the matrix, formatted as in Java array initializers.
toString(Fraction[][], String, String, String, String, String, String) - Static method in class ptolemy.math.FractionMatrixMath
Return a new String representing the matrix, formatted as specified by the ArrayStringFormat argument.
toString(int[]) - Static method in class ptolemy.math.IntegerArrayMath
Return a new String representing the array, formatted as in Java array initializers.
toString(int[], String, String, String) - Static method in class ptolemy.math.IntegerArrayMath
Return a new String representing the array, formatted as specified by the ArrayStringFormat argument.
toString(int[][]) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new String representing the matrix, formatted as in Java array initializers.
toString(int[][], String, String, String, String, String, String) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new String representing the matrix, formatted as specified by the ArrayStringFormat argument.
toString(long[]) - Static method in class ptolemy.math.LongArrayMath
Return a new String representing the array, formatted as in Java array initializers.
toString(long[], String, String, String) - Static method in class ptolemy.math.LongArrayMath
Return a new String representing the array, formatted as specified by the ArrayStringFormat argument.
toString(long[][]) - Static method in class ptolemy.math.LongMatrixMath
Return a new String representing the matrix, formatted as in Java array initializers.
toString(long[][], String, String, String, String, String, String) - Static method in class ptolemy.math.LongMatrixMath
Return a new String representing the matrix, formatted as specified by the ArrayStringFormat argument.
toString() - Method in class ptolemy.math.Overflow
Return the string representation of this overflow.
toString() - Method in class ptolemy.math.Precision
Return a string representing this precision.
toString(Precision.PrecisionFormat) - Method in class ptolemy.math.Precision
Return a string representation of this format in one of several styles.
toString() - Method in class ptolemy.math.Quantization
Return a string representing this quantization.
toString() - Method in class ptolemy.math.Rounding
Return the string representation of this rounding.
toString() - Method in class ptolemy.media.Audio
Return a readable representation of the header data.
toString() - Method in class ptolemy.moml.Documentation
Get the documentation as a string, with the class name prepended.
toString() - Method in class ptolemy.moml.filter.AddEditorFactory
Deprecated.
Return a string that describes what the filter does.
toString() - Method in class ptolemy.moml.filter.AddIcon
Return a string that describes what the filter does.
toString() - Method in class ptolemy.moml.filter.AddMissingParameter
Return a string that describes what the filter does.
toString() - Method in class ptolemy.moml.filter.BackwardCompatibility
Return a string that describes all the filters.
toString() - Method in class ptolemy.moml.filter.ChangeFixedWidth1ToAuto
Return a string that describes what the filter does.
toString() - Method in class ptolemy.moml.filter.ClassChanges
Return a string that describes what the filter does.
toString() - Method in class ptolemy.moml.filter.GRColorChanges
Return a string that describes what the filter does.
toString() - Method in class ptolemy.moml.filter.HideAnnotationNames
Return a string that describes what the filter does.
toString() - Method in class ptolemy.moml.filter.JavaScriptThisUpdate
Return a string that describes what the filter does.
toString() - Method in class ptolemy.moml.filter.LazyTypedCompositeActorChanges
Return a string that describes what the filter does.
toString() - Method in class ptolemy.moml.filter.MultiportToSinglePort
Return a string that describes what the filter does.
toString() - Method in class ptolemy.moml.filter.NamedObjClassesSeen
Return a string that describes what the filter does.
toString() - Method in class ptolemy.moml.filter.ParameterNameChanges
Return a string that describes what the filter does.
toString() - Method in class ptolemy.moml.filter.PortClassChanges
Return a string that describes what the filter does.
toString() - Method in class ptolemy.moml.filter.PortNameChanges
Return a string that describes what the filter does.
toString() - Method in class ptolemy.moml.filter.PropertyClassChanges
Return a string that describes what the filter does.
toString() - Method in class ptolemy.moml.filter.RelationWidthChanges
Return a string that describes what the filter does.
toString() - Method in class ptolemy.moml.filter.RemoveClasses
Return a string that describes what the filter does.
toString() - Method in class ptolemy.moml.filter.RemoveGraphicalClasses
Return a string that describes what the filter does.
toString() - Method in class ptolemy.moml.filter.RemoveNonPtinyClasses
Return a string that describes what the filter does.
toString() - Method in class ptolemy.moml.filter.RemoveProperties
Return a string that describes what the filter does.
toString() - Method in interface ptolemy.moml.MoMLFilter
Return a string that describes what the filter does.
toString() - Method in class ptolemy.moml.MoMLUndoEntry
Return the MoML of the undo action.
toString() - Method in class ptolemy.moml.UndoContext
Return a string representation of this object.
toString() - Method in class ptolemy.moml.unit.Token
Returns the image.
toString() - Method in class ptolemy.moml.unit.Unit
 
toString() - Method in class ptolemy.moml.unit.UnitConstraint
 
toString() - Method in class ptolemy.moml.unit.UnitExpr
 
toString() - Method in interface ptolemy.moml.unit.UnitPresentation
 
toString() - Method in class ptolemy.moml.unit.UnitTerm
 
toString() - Method in class ptolemy.moml.Vertex
Get a description of the class, which is the class name and the location in parentheses.
toString(Document) - Static method in class ptolemy.util.XSLTUtilities
Given a Document, generate a String.
toString() - Method in class ptolemy.vergil.actor.LayoutHint.LayoutHintItem
Get a String representation of a LayoutHint which will be the same as LayoutHint.LayoutHintItem.getExpression().
toString() - Method in class ptolemy.vergil.actor.PortConnectSite
Return a string representation of this connect site.
toString() - Method in class ptolemy.vergil.icon.XMLIcon
Return a string representing this Icon.
toString() - Method in class ptolemy.vergil.kernel.attributes.UpdateAnnotations
Return a string that describes what the filter does.
toString() - Method in class ptolemy.vergil.kernel.Link
Return a string representation of this link.
toString() - Method in class ptolemy.vergil.toolbox.GraphicElement
Return a string this representing this GraphicElement.
toString() - Method in class ptolemy.vergil.toolbox.PortSite
 
toStringContents() - Method in class org.kepler.configuration.ConfigurationProperty
Returns the string contents of this property without the namespace, module name, and origin module name (if present).
toStringPrecision() - Method in class ptolemy.math.FixPoint
Return a string representation of this number along with the Precision of the number.
toStringValuePrecision() - Method in class ptolemy.math.FixPoint
Return a string representation of this number along with the unscaled value and Precision of the number.
toStringWithoutRevision() - Method in class org.kepler.objectmanager.lsid.KeplerLSID
Return a string that contains only the first five elements of the LSID.
TotallyOrderedSet - Class in ptolemy.actor.util
An object of this class is a totally ordered set with an increasing order.
TotallyOrderedSet(Comparator) - Constructor for class ptolemy.actor.util.TotallyOrderedSet
Construct a set with the given comparator.
totalMemory() - Static method in class ptolemy.data.expr.UtilityFunctions
Return the approximate number of bytes used by current objects and available for future object allocation.
toToken(String, Type) - Method in class org.kepler.gis.data.WebViewConverter
Converts from a geojson string to a token.
toToken(String, Type) - Method in interface org.kepler.webview.data.Converter
 
toXml() - Method in class org.kepler.objectmanager.data.db.Attribute
Serialize the data item in XML format.
toXml() - Method in class org.kepler.objectmanager.data.db.Entity
Serialize the data item in XML format.
trace(Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Return the trace of a square matrix, which is the sum of the diagonal entries A11 + A22 + ... + Ann Throw an IllegalArgumentException if the matrix is not square.
trace(double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Return the trace of a square matrix, which is the sum of the diagonal entries A11 + A22 + ... + Ann Throw an IllegalArgumentException if the matrix is not square.
trace(float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Return the trace of a square matrix, which is the sum of the diagonal entries A11 + A22 + ... + Ann Throw an IllegalArgumentException if the matrix is not square.
trace(Fraction[][]) - Static method in class ptolemy.math.FractionMatrixMath
Return the trace of a square matrix, which is the sum of the diagonal entries A11 + A22 + ... + Ann Throw an IllegalArgumentException if the matrix is not square.
trace(int[][]) - Static method in class ptolemy.math.IntegerMatrixMath
Return the trace of a square matrix, which is the sum of the diagonal entries A11 + A22 + ... + Ann Throw an IllegalArgumentException if the matrix is not square.
trace(long[][]) - Static method in class ptolemy.math.LongMatrixMath
Return the trace of a square matrix, which is the sum of the diagonal entries A11 + A22 + ... + Ann Throw an IllegalArgumentException if the matrix is not square.
trace() - Method in class ptolemy.moml.unit.Solution
 
traceEvaluation(String) - Static method in class ptolemy.data.expr.UtilityFunctions
Evaluate the given string as an expression in the expression language.
traceParseTreeEvaluation(ASTPtRootNode, ParserScope) - Method in class ptolemy.data.expr.ParseTreeEvaluator
Trace the evaluation of the parse tree with the specified root node using the specified scope to resolve the values of variables.
TrafficLightFigure - Class in org.kepler.monitor.figure
 
TrafficLightFigure(int, RectangularShape) - Constructor for class org.kepler.monitor.figure.TrafficLightFigure
 
TRAINING_MODE_ERROR_MESSAGE - Static variable in class ptolemy.actor.lib.NonStrictTest
Exception message that is used if we are running under the nightly build and the trainingMode parameter is true.
TRAINING_MODE_ERROR_MESSAGE - Static variable in class ptolemy.actor.lib.TestExceptionAttribute
Exception message that is used if we are running under the nightly build and the trainingMode parameter is true.
TRAINING_MODE_ERROR_MESSAGE - Static variable in class ptolemy.actor.lib.TestExceptionHandler
Deprecated.
Exception message that is used if we are running under the nightly build and the trainingMode parameter is true.
trainingMode - Variable in class ptolemy.actor.lib.NonStrictTest
If true, then do not check inputs, but rather collect them into the correctValues array.
trainingMode - Variable in class ptolemy.actor.lib.PublisherNonStrictTest
If true, then do not check inputs, but rather collect them into the correctValues array.
trainingMode - Variable in class ptolemy.actor.lib.TestExceptionAttribute
If true, then collect the exception message and set the correctExceptionMessage parameter with the content of the exception.
trainingMode - Variable in class ptolemy.actor.lib.TestExceptionHandler
Deprecated.
If true, then collect the exception message and set the correctExceptionMessage parameter with the content of the exception.
trainingMode - Variable in class ptolemy.actor.lib.TypeTest
If true, then do not check inputs, but rather collect them into the portTypes and parameterTypes arrays.
tranformVectorToArray(Vector) - Static method in class org.ecoinformatics.seek.ecogrid.DocumentType
Static method to transform a vector to document type array
TranscriptionFactorBindingSite - Class in org.sdm.spa.actors.piw.viz
 
TranscriptionFactorBindingSite(String, int) - Constructor for class org.sdm.spa.actors.piw.viz.TranscriptionFactorBindingSite
 
TransferableWrapper - Class in org.mlc.swing.layout
A wrapper for transferring data using drag and drop.
TransferableWrapper(Object) - Constructor for class org.mlc.swing.layout.TransferableWrapper
Instantiate a TransferableWrapper.
TransferComponent - Class in org.kepler.provenance.manager
A ComponentEntity that contains a list of provenance execution KeplerLSIDs.
TransferComponent(String) - Constructor for class org.kepler.provenance.manager.TransferComponent
Create a new TransferComponent.
TransferComponent(CompositeEntity, String) - Constructor for class org.kepler.provenance.manager.TransferComponent
Create a new TransferComponent in a container with a name.
transferInputs(IOPort) - Method in class ptolemy.actor.Director
Transfer data from an input port of the container to the ports it is connected to on the inside.
transferInputs(IOPort) - Method in class ptolemy.actor.DoNothingDirector
 
transferInputs() - Method in class ptolemy.actor.IOPort
Deprecated.
Domains should use sendInside directly to implement their transferInputs method.
transferInputs(IOPort) - Method in class ptolemy.actor.process.ProcessDirector
Do nothing.
transferInputs(IOPort) - Method in class ptolemy.actor.sched.FixedPointDirector
Transfer data from the specified input port of the container to the ports it is connected to on the inside.
transferInputs(IOPort) - Method in class ptolemy.domains.continuous.kernel.ContinuousDirector
Override the base class to do nothing.
transferInputs(IOPort) - Method in class ptolemy.domains.ddf.kernel.DDFDirector
Override the base class method to transfer enough tokens to complete an internal iteration.
transferInputs(IOPort) - Method in class ptolemy.domains.de.kernel.DEDirector
Transfer data from an input port of the container to the ports it is connected to on the inside.
transferInputs(IOPort) - Method in class ptolemy.domains.modal.kernel.FSMDirector
Transfer data from the input port of the container to the ports connected to the inside of the input port and on the mode controller or the refinement of its current state.
transferInputs(IOPort) - Method in class ptolemy.domains.modal.kernel.MultirateFSMDirector
Transfer data from the input port of the container to the ports connected to the inside of the input port and on the mode controller or the refinement of its current state.
transferInputs(IOPort) - Method in class ptolemy.domains.modal.kernel.NonStrictFSMDirector
Override the super class by only transferring inputs for those input ports that are referred by the guard expressions of the preemptive transitions leaving the current state.
transferInputs(IOPort) - Method in class ptolemy.domains.sdf.kernel.SDFDirector
Override the base class method to transfer enough tokens to complete an internal iteration.
transferOutputs() - Method in class ptolemy.actor.Director
Transfer data from all output ports of the container to the ports they are connected to on the outside.
transferOutputs(IOPort) - Method in class ptolemy.actor.Director
Transfer data from an output port of the container to the ports it is connected to on the outside.
transferOutputs(IOPort) - Method in class ptolemy.actor.DoNothingDirector
 
transferOutputs() - Method in class ptolemy.actor.IOPort
Deprecated.
domains should use getInside directly to implement their transferOutputs method.
transferOutputs(IOPort) - Method in class ptolemy.actor.process.ProcessDirector
Do nothing.
transferOutputs(IOPort) - Method in class ptolemy.actor.sched.FixedPointDirector
Transfer data from the specified output port of the container to the ports it is connected to on the outside.
transferOutputs(IOPort) - Method in class ptolemy.domains.continuous.kernel.ContinuousDirector
Override the base class to do nothing.
transferOutputs(IOPort) - Method in class ptolemy.domains.ddf.kernel.DDFDirector
Override the base class method to transfer enough tokens to fulfill the output production rate.
transferOutputs(IOPort) - Method in class ptolemy.domains.modal.kernel.MultirateFSMDirector
Transfer data from an output port of the current refinement actor to the ports it is connected to on the outside.
transferOutputs(IOPort) - Method in class ptolemy.domains.sdf.kernel.SDFDirector
Override the base class method to transfer enough tokens to fulfill the output production rate.
transferServiceVectToDefaultSelectedServiceVect(Vector) - Static method in class org.ecoinformatics.seek.ecogrid.SelectableEcoGridService
Method to transfer a vecotr of ecogrid service to default selected ecogrid service vector.
transferToken() - Method in class ptolemy.actor.process.Branch
Transfer a single token from the producer receiver to the consumer receiver.
transform(double, double, double, double) - Method in class org.ecoinformatics.seek.gis.java_gis.Grid
 
Transform - Class in ptolemy.actor.lib.image
Transform an image by either rotating or scaling it.
Transform() - Constructor for class ptolemy.actor.lib.image.Transform
 
transform(Document, String) - Static method in class ptolemy.util.XSLTUtilities
Transform a document.
transform(Document, List) - Static method in class ptolemy.util.XSLTUtilities
Transform a document by applying a list of transforms.
transform(String, FileWriter, List) - Static method in class ptolemy.util.XSLTUtilities
Transform a file by applying a list of XSL transforms.
transform(AffineTransform) - Method in class ptolemy.vergil.kernel.RelativeLinkFigure
Set the given affine transformation for this figure.
transformedVersionOf(Object) - Method in interface ptolemy.graph.analysis.analyzer.Transformer
Return the transformed version of a given object in the original graph.
transformedVersionOf(Object) - Method in class ptolemy.graph.analysis.MirrorTransformation
Return the transformed version of a given object in the original graph.
transformedVersionOf(Object) - Method in class ptolemy.graph.analysis.strategy.ClusterNodesTransformerStrategy
Unsupported operation.
transformedVersionOf(Object) - Method in class ptolemy.graph.analysis.strategy.MirrorTransformerStrategy
Return the transformed version of a given object in the original graph.
Transformer - Class in ptolemy.actor.lib
This is an abstract base class for actors that transform an input stream into an output stream.
Transformer(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Transformer
Construct an actor with the given container and name.
Transformer - Interface in ptolemy.graph.analysis.analyzer
A base interface for transformers.
transformResultRecordArrayToVector(ResultRecord[], Vector) - Static method in class org.ecoinformatics.seek.ecogrid.quicksearch.ResultRecord
Method to transfer a array of ResultRecord to a Vector
transformResultset(ResultsetType, String, CompositeEntity) - Method in class org.ecoinformatics.seek.datasource.eml.eml2.EML2MetadataSpecification
This method will transfer ResultsetType java object to array of ResultRecord java object.
transformResultset(ResultsetType, String, CompositeEntity, Vector) - Method in class org.kepler.dataproxy.metadata.ADN.ADNMetadataSpecification
This method will transfer ResultsetType java object to array of ResultRecord java object.
TransientSingletonConfigurableAttribute - Class in ptolemy.kernel.util
Deprecated.
Use SingletonConfigurableAttribute instead with setPersistent(false).
TransientSingletonConfigurableAttribute() - Constructor for class ptolemy.kernel.util.TransientSingletonConfigurableAttribute
Deprecated.
Construct a new attribute with no container and an empty string as its name.
TransientSingletonConfigurableAttribute(Workspace) - Constructor for class ptolemy.kernel.util.TransientSingletonConfigurableAttribute
Deprecated.
Construct a new attribute with no container and an empty string as a name.
TransientSingletonConfigurableAttribute(NamedObj, String) - Constructor for class ptolemy.kernel.util.TransientSingletonConfigurableAttribute
Deprecated.
Construct an attribute with the given container and name.
TransientState - Class in ptolemy.domains.modal.kernel
A state that is passed through in a firing of the FSM.
TransientState(CompositeEntity, String) - Constructor for class ptolemy.domains.modal.kernel.TransientState
Construct a transient state.
TransientStringAttribute - Class in org.kepler.util
This is a string attribute that overrides the exportMoML method to effectively remove it (and any children) from MoML generated by the parent NamedObj.
TransientStringAttribute() - Constructor for class org.kepler.util.TransientStringAttribute
Construct an attribute in the default workspace with an empty string as its name.
TransientStringAttribute(Workspace) - Constructor for class org.kepler.util.TransientStringAttribute
Construct an attribute in the specified workspace with an empty string as a name.
TransientStringAttribute(NamedObj, String) - Constructor for class org.kepler.util.TransientStringAttribute
Construct an attribute with the given name contained by the specified container.
Transition - Class in org.kepler.tagging
Created by IntelliJ IDEA.
Transition() - Constructor for class org.kepler.tagging.Transition
 
Transition(Range, Range) - Constructor for class org.kepler.tagging.Transition
 
Transition - Class in ptolemy.domains.modal.kernel
A Transition has a source state and a destination state.
Transition(FSMActor, String) - Constructor for class ptolemy.domains.modal.kernel.Transition
Construct a transition with the given name contained by the specified entity.
Transition(Workspace) - Constructor for class ptolemy.domains.modal.kernel.Transition
Construct a transition in the given workspace with an empty string as a name.
TransitionController - Class in ptolemy.vergil.modal
This class provides interaction techniques for transitions in an FSM.
TransitionController(GraphController) - Constructor for class ptolemy.vergil.modal.TransitionController
Create a transition controller associated with the specified graph controller.
TransitionController.LinkDropper - Class in ptolemy.vergil.modal
An inner class that handles interactive changes to connectivity.
TransitionController.LinkRenderer - Class in ptolemy.vergil.modal
Render a link.
TransitionController.LinkTarget - Class in ptolemy.vergil.modal
A Link target.
TransitionEditorPaneFactory - Class in ptolemy.actor.gui
An editor for a transition.
TransitionEditorPaneFactory(NamedObj, String) - Constructor for class ptolemy.actor.gui.TransitionEditorPaneFactory
Construct a factory with the specified container and name.
TransitionRefinement - Class in ptolemy.domains.modal.modal
Transition refinements provide a way to use composite actors which are run whenever a transition is taken in an FSM modal, much in the same way that State refinements are run every time an FSM is in a particular state.
TransitionRefinement(CompositeEntity, String) - Constructor for class ptolemy.domains.modal.modal.TransitionRefinement
Construct a modal controller with a name and a container.
TransitionRefinementPort - Class in ptolemy.domains.modal.modal
A port for transition refinements in modal models.
TransitionRefinementPort(Workspace) - Constructor for class ptolemy.domains.modal.modal.TransitionRefinementPort
Construct a port in the given workspace.
TransitionRefinementPort(ComponentEntity, String) - Constructor for class ptolemy.domains.modal.modal.TransitionRefinementPort
Construct a port with a containing actor and a name that is neither an input nor an output.
transitionTable - Variable in class org.geon.Diagrams
Specifies the transitions between diagrams.
transitionTable - Variable in class org.geon.NextDiagram
 
transitiveClosure() - Method in class ptolemy.graph.DirectedGraph
Return transitive closure for the graph.
TransitiveClosureAnalysis - Class in ptolemy.graph.analysis
An analysis for the computation of transitive closure of a directed graph.
TransitiveClosureAnalysis(Graph) - Constructor for class ptolemy.graph.analysis.TransitiveClosureAnalysis
Construct an instance of this class for a given graph with a default analyzer.
TransitiveClosureAnalysis(TransitiveClosureAnalyzer) - Constructor for class ptolemy.graph.analysis.TransitiveClosureAnalysis
Construct an instance of this class with a given analyzer.
TransitiveClosureAnalyzer - Interface in ptolemy.graph.analysis.analyzer
An interface to the analyzers for the computation of transitive closure of a directed graph.
TransitiveClosureDBQuery - Class in org.geon
Receives a string query and a database connection reference.
TransitiveClosureDBQuery(CompositeEntity, String) - Constructor for class org.geon.TransitiveClosureDBQuery
Construct an actor with the given container and name.
transitiveClosureMatrix() - Method in interface ptolemy.graph.analysis.analyzer.TransitiveClosureAnalyzer
Return the transitive closure of the graph under analysis in the form of two dimensional array.
transitiveClosureMatrix() - Method in class ptolemy.graph.analysis.strategy.FloydWarshallTransitiveClosureStrategy
Compute the transitive closure of the graph under analysis in the form of two dimensional array.
transitiveClosureMatrix() - Method in class ptolemy.graph.analysis.TransitiveClosureAnalysis
Compute the transitive closure of the graph under analysis in the form of two dimensional array.
translate(int, int) - Method in class ptolemy.plot.EPSGraphics
 
translate(LayerEvent, double, double) - Method in class ptolemy.vergil.basic.LocatableNodeDragInteractor
Drag all selected nodes and move any attached edges.
transpose(Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new matrix that is constructed by transposing the input matrix.
transpose(double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Return a new matrix that is constructed by transposing the input matrix.
transpose(float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Return a new matrix that is constructed by transposing the input matrix.
transpose(Fraction[][]) - Static method in class ptolemy.math.FractionMatrixMath
Return a new matrix that is constructed by transposing the input matrix.
transpose(int[][]) - Static method in class ptolemy.math.IntegerMatrixMath
Return a new matrix that is constructed by transposing the input matrix.
transpose(long[][]) - Static method in class ptolemy.math.LongMatrixMath
Return a new matrix that is constructed by transposing the input matrix.
TRAP - Static variable in class ptolemy.math.Overflow
Singleton implementing Trap overflow strategy.
TreeAction - Class in org.kepler.gui
This action adds annotations to the tree
TreeAction(TreePath, Component, String) - Constructor for class org.kepler.gui.TreeAction
Constructor
treeCollapsed(TreeExpansionEvent) - Method in class org.kepler.objectmanager.library.LibraryManager
Called whenever an item in the tree is collapsed.
TreeDecomposer - Class in org.cipres.kepler
The TreeDecomposer actor decomposes a tree into subtrees.
TreeDecomposer(CompositeEntity, String) - Constructor for class org.cipres.kepler.TreeDecomposer
Construct a TreeDecomposer actor with the given container and name.
TreeEditor - Class in ptolemy.vergil.tree
An application that shows the elements of a Ptolemy II model in a JTree.
TreeEditor(String) - Constructor for class ptolemy.vergil.tree.TreeEditor
Construct a display of the Ptolemy II model given by the specified MoML file.
TreeEditorPanel - Class in ptolemy.vergil.tree
A panel that displays a Ptolemy II model in a JTree.
TreeEditorPanel(String) - Constructor for class ptolemy.vergil.tree.TreeEditorPanel
Construct a display of the Ptolemy II model given by the specified MoML file.
TreeEditorPanel(String, TreeCellRenderer) - Constructor for class ptolemy.vergil.tree.TreeEditorPanel
Construct a display of the Ptolemy II model given by the specified MoML file.
treeExpanded(TreeExpansionEvent) - Method in class org.kepler.objectmanager.library.LibraryManager
Called whenever an item in the tree is expanded.
TreeFrame(CompositeEntity) - Constructor for class ptolemy.vergil.tree.TreeTableau.TreeFrame
Construct a TreeFrame containing a tree view of the specified composite entity.
TreeImprover - Class in org.cipres.kepler
The TreeImprover actor improves a phylogenetic tree according to the settings configured by the user through the GUIGen interface.
TreeImprover(CompositeEntity, String) - Constructor for class org.cipres.kepler.TreeImprover
Construct a TreeImprover actor with the given container and name.
TreeMerger - Class in org.cipres.kepler
The TreeMerger actor merges a set of trees got from the input port and sends the whole tree to the output port.This actor uses the "tree merge" services provided by the CIPRes CORBA registry.
TreeMerger(CompositeEntity, String) - Constructor for class org.cipres.kepler.TreeMerger
Construct a TreeMerger actor with the given container and name.
TreeParser - Class in org.cipres.kepler
The TreeParser actor parses tree data structure into the tree name, tree score, leaf set, and Newick, and sends them to different ouput ports.
TreeParser(CompositeEntity, String) - Constructor for class org.cipres.kepler.TreeParser
Construct a TreeParser actor with the given container and name.
TreeTableau - Class in ptolemy.vergil.tree
A tree view for ptolemy models.
TreeTableau(PtolemyEffigy, String) - Constructor for class ptolemy.vergil.tree.TreeTableau
Construct a new tableau for the model represented by the given effigy.
TreeTableau.Factory - Class in ptolemy.vergil.tree
This is a factory that creates tree-view tableaux for Ptolemy models.
TreeTableau.TreeFrame - Class in ptolemy.vergil.tree
This is a top-level window containing a tree-view of a composite entity.
TreeToString - Class in org.cipres.kepler
The TreeToString actor gets the whole description of a tree (including tree name, tree score, leaf set, and Newick) and transforms it into a single string.
TreeToString(CompositeEntity, String) - Constructor for class org.cipres.kepler.TreeToString
Construct a TreeToString actor with the given container and name.
TreeUpdateListener() - Constructor for class ptolemy.vergil.tree.EntityTreeModel.TreeUpdateListener
 
TreeVizForester - Class in org.cipres.kepler
Given a tree expression (in newick format), the TreeVizForester actor displays the phylogenetic tree in the Forester tree view window.
TreeVizForester(CompositeEntity, String) - Constructor for class org.cipres.kepler.TreeVizForester
Construct a TreeVizForester actor with the given container and name.
TrellisDecoder - Class in ptolemy.actor.lib.comm
The TrellisDecoder is a generalization of the ViterbiDecoder.
TrellisDecoder(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.comm.TrellisDecoder
Construct an actor with the given container and name.
trellisDecoding - Variable in class ptolemy.actor.lib.comm.ViterbiDecoder
Boolean defining whether the decoder will do trellis decoding.
trials - Variable in class ptolemy.actor.lib.colt.ColtBinomialSelector
The total number of trials to assign.
triangle(double, double, double) - Static method in class ptolemy.math.SignalProcessing
Return a sample of a triangle wave with the specified period and phase at the specified time.
triangleDiagramHeight - Static variable in class org.geon.TernaryDiagram
 
Triangular - Class in ptolemy.actor.lib
Produce a random sequence with a triangular distribution.
Triangular(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Triangular
Construct an actor with the given container and name.
TrigFunction - Class in ptolemy.actor.lib
Produce an output token on each firing with a value that is equal to the specified trigonometric function of the input.
TrigFunction(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.TrigFunction
Construct an actor with the given container and name.
trigger - Variable in class org.ecoinformatics.seek.gis.gdal.GDALTranslateActor
trigger
trigger - Variable in class org.ecoinformatics.seek.gis.gdal.GDALWarpActor
trigger
trigger - Variable in class org.ecoinformatics.seek.gis.grass.GrassExportActor
 
trigger - Variable in class org.ecoinformatics.seek.gis.grass.GrassImportActor
 
trigger - Variable in class org.eol.WmsdActor
 
trigger - Variable in class org.geon.AddPointToSVG
Triggering the actor execution.
trigger - Variable in class org.geon.BrowserDisplay
A trigger to invoke the actor.
trigger - Variable in class org.geon.CloseDBConnection
A trigger for closing the db connection
trigger - Variable in class org.geon.OpenDBConnection
Input trigger: if connected, actor will only run once token is available.
trigger - Variable in class org.kepler.actor.io.SshDirectoryList
The trigger port to do the reading.
trigger - Variable in class org.kepler.actor.io.SshDirectoryList_v1_1
The trigger port to do the reading.
trigger - Variable in class org.kepler.objectmanager.cache.DataCacheGetActor
 
trigger - Variable in class org.kepler.objectmanager.cache.DataCachePutActor
 
trigger - Variable in class org.resurgence.actor.DirectoryMaker
The input port, which is a trigger.
trigger - Variable in class org.resurgence.actor.FileArrayPrinter
The input port, which is a trigger.
trigger - Variable in class org.sdm.spa.BrowserUI
The port to trigger the actor in case there are no input ports connected.
trigger - Variable in class org.sdm.spa.CommandLine
 
trigger - Variable in class org.sdm.spa.CommandLineExec
The trigger port.
trigger - Variable in class org.srb.SProxy
An input trigger.
trigger - Variable in class org.srb.SRBAddMD
An input trigger.
trigger - Variable in class org.srb.SRBDisconnect
 
trigger - Variable in class org.srb.SRBProxyCommand
The trigger port.
trigger - Variable in class org.srb.SRBWriter
The trigger port.
trigger - Variable in class ptolemy.actor.lib.Sampler
The trigger port, which has undeclared type.
trigger - Variable in class ptolemy.actor.lib.Source
The trigger port.
trigger - Variable in class ptolemy.domains.continuous.lib.LevelCrossingDetector
The trigger port.
trigger - Variable in class ptolemy.domains.de.lib.MostRecent
The trigger port, which has undeclared type.
trigger - Variable in class ptolemy.domains.de.lib.Queue
The trigger port, which has undeclared type.
trigger - Variable in class ptolemy.domains.de.lib.TestActorPortDepth
The trigger.
TriggeredClock - Class in ptolemy.actor.lib
Deprecated.
Use DiscreteClock.
TriggeredClock(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.TriggeredClock
Deprecated.
Construct an actor with the specified container and name.
triggerKeys - Variable in class ptolemy.actor.lib.Dictionary
Upon receiving any token at this port, this actor will produce on the keys output an array containing all the keys of entries in the dictionary.
triggerOutput - Variable in class org.ROADnet.OrbLogger
 
triggerSwitch - Variable in class org.dart.matlab.MatlabExpression
The trigger switch ,whether to execute the actor or not.
triggerValues - Variable in class ptolemy.actor.lib.Dictionary
Upon receiving any token at this port, this actor will produce on the values output an array containing all the values of entries in the dictionary.
trimmedKey(String) - Static method in class org.kepler.configuration.CommonsConfigurationReader
 
trimmedKey(String) - Static method in class org.kepler.configuration.ConfigurationTest
 
trimSpaces - Variable in class ptolemy.actor.lib.io.CSVReader
If true, then trim spaces around each field name and value.
trimSpaces - Variable in class ptolemy.actor.lib.string.StringSplit
If true, then trim spaces around each resulting string.
trimString(String) - Static method in class org.camera.service.ServiceUtils
 
trimString(String) - Static method in class org.kepler.actor.rest.ServiceUtils
 
TRUE - Static variable in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
 
TRUE - Static variable in class ptolemy.data.BooleanToken
True-valued token.
TRUE - Static variable in class ptolemy.domains.modal.kernel.RelationType
Relation type a relation node that is evaluated to be true while the relation operation is not equal or inequal.
TrueGate - Class in ptolemy.actor.lib.logic
On each firing, output true if the input is present and true.
TrueGate(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.logic.TrueGate
Construct an actor in the specified container with the specified name.
trueInput - Variable in class ptolemy.actor.lib.BooleanMultiplexor
Input for tokens on the true path.
trueInput - Variable in class ptolemy.actor.lib.BooleanSelect
Input for tokens on the true path.
trueInput - Variable in class ptolemy.actor.lib.ConfigurationSelect
Input for tokens on the true path.
trueInput - Variable in class ptolemy.domains.ddf.lib.DDFBooleanSelect
Input for tokens on the true path.
trueInput_tokenConsumptionRate - Variable in class ptolemy.actor.lib.BooleanSelect
This parameter provides token consumption rate for trueInput.
trueInput_tokenConsumptionRate - Variable in class ptolemy.actor.lib.ConfigurationSelect
This parameter provides token consumption rate for trueInput.
trueInput_tokenConsumptionRate - Variable in class ptolemy.domains.ddf.lib.DDFBooleanSelect
This parameter provides token consumption rate for trueInput.
trueOutput - Variable in class ptolemy.actor.lib.BooleanSwitch
Output for tokens on the true path.
trueOutput - Variable in class ptolemy.actor.lib.ConfigurationSwitch
Output for tokens on the true path.
trueOutput_tokenProductionRate - Variable in class ptolemy.actor.lib.ConfigurationSwitch
This parameter provides token consumption rate for trueOutput.
trueProbability - Variable in class ptolemy.actor.lib.Bernoulli
The probability of true.
trueValue - Variable in class ptolemy.actor.lib.conversions.BooleanToAnything
The value produced at the output when a true input is read.
truncate(String, int) - Static method in class org.kepler.sms.Util
 
truncate(double, Precision) - Static method in class ptolemy.math.Quantizer
Deprecated.
Use roundToZero instead.
truncate(BigDecimal, Precision) - Static method in class ptolemy.math.Quantizer
Deprecated.
Use roundToZero instead.
truncate(FixPoint, Precision, Overflow) - Static method in class ptolemy.math.Quantizer
Deprecated.
Use roundToZero instead.
TRUNCATE - Static variable in class ptolemy.math.Rounding
Singleton implementing truncate rounding strategy.
TruncatedExistingConceptCBItem(OntologyCatalog, String) - Constructor for class org.kepler.tagging.gui.CBItems.TruncatedExistingConceptCBItem
 
TruncatedExistingConceptCBItem(OntologyCatalog, NamedOntClass) - Constructor for class org.kepler.tagging.gui.CBItems.TruncatedExistingConceptCBItem
 
TruncatedNamedOntClass(NamedOntClass) - Constructor for class org.kepler.tagging.gui.CBItems.TruncatedNamedOntClass
 
truncatedUnsignedByteValue() - Method in class ptolemy.data.LongToken
Return the value in the token truncated to an unsignedByte.
truncateString(String, int, int) - Static method in class ptolemy.util.StringUtilities
Return a string with a maximum line length of lineLength and a maximum number of lines numberOfLines.
tryToAssignIconByClass(NamedObj) - Static method in class org.kepler.icon.ComponentEntityConfig
Try to find an icon by class using mapping in the appropriate resource bundle
tryToAssignIconByClassName(NamedObj, String) - Static method in class org.kepler.icon.ComponentEntityConfig
 
tryToAssignIconByLSID(NamedObj) - Static method in class org.kepler.icon.ComponentEntityConfig
Look for an LSID in an Attribute, and if it exists, try to find an icon mapping in the appropriate resource bundle
tryToAssignIconBySemanticType(NamedObj) - Static method in class org.kepler.icon.ComponentEntityConfig
Try to assign the icon based on the semantic type.
tryToPad - Variable in class org.kepler.data.datasource.dataturbine.DataTurbine
Will attempt to identify and pad gappy data with pairs of timestamps and nils.
TupleToken - Class in ptolemy.data
A token that contains an ordered set of tokens.
TupleToken(Token[]) - Constructor for class ptolemy.data.TupleToken
Construct a TupleToken with the specified token array as its value.
TupleType - Class in ptolemy.data.type
A class representing the type of a FunctionToken.
TupleType(Type[]) - Constructor for class ptolemy.data.type.TupleType
Construct a new TupleType with the specified argument types and the given return type.
tupleValue() - Method in class ptolemy.data.TupleToken
Return an array of tokens populated with the contents of this array token.
TwoPlotExample - Class in ptolemy.plot.demo
TwoPlotExample is a simple example that uses displays two plots side by side.
TX_BANDS - Static variable in class org.kepler.gis.actor.calc.JiffleProcess
 
type - Variable in class org.kepler.gis.actor.io.GISWriter
The output format type.
TYPE - Static variable in class org.kepler.kar.handlers.ActorMetadataKAREntryHandler
 
TYPE - Static variable in class org.kepler.kar.KAREntry
Name object for type manifest attribute used for specifying the type of object contained by the KAREntry.
type - Variable in class org.kepler.reporting.rio.Item
 
type - Variable in class org.kepler.tagging.TagReloadType
 
type - Variable in class org.sdm.spa.util.ActorInspector.PortInfo
 
type - Variable in class ptolemy.actor.lib.hoc.ThreadedComposite.TokenFrame
The type of the frame.
TYPE - Static variable in class ptolemy.actor.TypedIOPort
Indicate that the description(int) method should include information about the type of this port.
TYPE - Static variable in class ptolemy.data.ActorToken
Singleton reference to this type.
TYPE - Static variable in class ptolemy.data.type.test.TestToken
The type of this token.
Type - Interface in ptolemy.data.type
An interface representing the type of a Token.
type - Variable in class ptolemy.vergil.kernel.attributes.ArcAttribute
The type of the arc, which should be one of "chord", "open", or "pie".
TYPE_CLASSNAME - Static variable in class org.kepler.objectmanager.library.LibSearch
 
TYPE_COMPONENT - Static variable in class org.kepler.objectmanager.library.LibIndex
Map of integers for the different types of objects that are stored in the LIBRARY_INDEX table.
TYPE_CONCEPT - Static variable in class org.kepler.objectmanager.library.LibIndex
 
TYPE_FOLDER - Static variable in class org.kepler.objectmanager.library.LibIndex
 
TYPE_FOLDERNAME - Static variable in class org.kepler.objectmanager.library.LibSearch
 
TYPE_KAR - Static variable in class org.kepler.objectmanager.library.LibIndex
 
TYPE_KAR_ERROR - Static variable in class org.kepler.objectmanager.library.LibIndex
 
TYPE_KARFOLDER - Static variable in class org.kepler.objectmanager.library.LibIndex
 
TYPE_KARNAME - Static variable in class org.kepler.objectmanager.library.LibSearch
 
TYPE_LOCALREPO - Static variable in class org.kepler.objectmanager.library.LibIndex
 
TYPE_LOCALREPO - Static variable in class org.kepler.objectmanager.library.LibSearch
 
TYPE_NAME - Static variable in class org.kepler.objectmanager.library.LibSearch
Map of integers for the different types of strings that are stored in the CACHE_SEARCH table.
TYPE_NAMED_OBJ - Static variable in class org.kepler.objectmanager.library.LibIndex
 
TYPE_OBJECT - Static variable in class org.kepler.objectmanager.library.LibIndex
 
TYPE_ONTCLASSNAME - Static variable in class org.kepler.objectmanager.library.LibSearch
 
TYPE_ONTOLOGY - Static variable in class org.kepler.objectmanager.library.LibIndex
 
TYPE_ONTOLOGY - Static variable in class org.kepler.objectmanager.library.LibSearch
 
Typeable - Interface in ptolemy.data.type
Interface for objects with types.
TypeAnimatorApplet - Class in ptolemy.vergil
An applet that demonstrates the Ptolemy II type system.
TypeAnimatorApplet() - Constructor for class ptolemy.vergil.TypeAnimatorApplet
 
TypeAttribute - Class in ptolemy.actor
An attribute for defining a data type for a port.
TypeAttribute(Workspace) - Constructor for class ptolemy.actor.TypeAttribute
Construct a parameter in the specified workspace with an empty string as a name.
TypeAttribute(TypedIOPort, String) - Constructor for class ptolemy.actor.TypeAttribute
Construct an attribute with the given name contained by the specified port.
TypeAttribute(Attribute, String) - Constructor for class ptolemy.actor.TypeAttribute
Construct an attribute with the given name contained by the specified port.
typeChanged(TypeEvent) - Method in class org.kepler.sms.actors.MergeActor
 
typeChanged(TypeEvent) - Method in class ptolemy.actor.test.TestTypeListener
Notify that the type of a port is changed.
typeChanged(TypeEvent) - Method in interface ptolemy.actor.TypeListener
React to the fact that the type of a Typeable is changed.
typeChanged() - Method in class ptolemy.domains.modal.kernel.RelationNode
Return true if the type changed and the previous type information is valid.
TypeConflictException - Exception in ptolemy.actor
Thrown on detecting type conflicts.
TypeConflictException(List) - Constructor for exception ptolemy.actor.TypeConflictException
Construct an Exception with a list of Inequality instances where type conflicts occurred.
TypeConflictException(List, String) - Constructor for exception ptolemy.actor.TypeConflictException
Construct an Exception with a list of Inequality instances where type conflicts occurred.
TypeConstant - Class in ptolemy.data.type
An InequalityTerm that encapsulates a constant type.
TypeConstant(Type) - Constructor for class ptolemy.data.type.TypeConstant
Construct a TypeConstant.
typeConstraintList() - Method in class org.sdm.spa.SyncOnTerminator
Return the type constraints of this actor.
typeConstraintList() - Method in class ptolemy.actor.TypedAtomicActor
Deprecated.
Use typeConstraints().
typeConstraintList() - Method in class ptolemy.actor.TypedCompositeActor
Deprecated.
Use typeConstraints().
typeConstraintList() - Method in class ptolemy.actor.TypedIOPort
Deprecated.
Use typeConstraints().
typeConstraintList() - Method in class ptolemy.data.expr.Variable
Deprecated.
Use typeConstraints().
typeConstraints() - Method in class ptolemy.actor.lib.hoc.IterateOverArray
Override the base class to ensure that the input ports of this actor all have array types.
typeConstraints() - Method in interface ptolemy.actor.TypedActor
Return the type constraints of this actor.
typeConstraints() - Method in class ptolemy.actor.TypedAtomicActor
Return the type constraints of this actor.
typeConstraints() - Method in class ptolemy.actor.TypedCompositeActor
Return the type constraints of this typed composite actor.
typeConstraints() - Method in class ptolemy.actor.TypedIOPort
Return the type constraints of this port in the form of a set of inequalities.
typeConstraints() - Method in class ptolemy.actor.TypeOpaqueCompositeActor
Return the type constraints of this actor.
typeConstraints() - Method in class ptolemy.data.expr.Variable
Return the type constraints of this variable.
typeConstraints() - Method in interface ptolemy.data.type.HasTypeConstraints
Return the type constraints of this object.
typeConstraints() - Method in class ptolemy.domains.modal.kernel.AbstractActionsAttribute
Return the type constraints of this object.
typeConstraints() - Method in class ptolemy.domains.modal.kernel.FSMActor
Return the type constraints of this actor.
typeConstraints() - Method in class ptolemy.domains.modal.modal.RefinementPort
Return the type constraints of this port in the form of a set of inequalities.
TypedActor - Interface in ptolemy.actor
A TypedActor is an actor whose ports have types.
TypedAtomicActor - Class in ptolemy.actor
A TypedAtomicActor is an AtomicActor whose ports and parameters have types.
TypedAtomicActor() - Constructor for class ptolemy.actor.TypedAtomicActor
Construct an actor in the default workspace with an empty string as its name.
TypedAtomicActor(Workspace) - Constructor for class ptolemy.actor.TypedAtomicActor
Construct an actor in the specified workspace with an empty string as a name.
TypedAtomicActor(CompositeEntity, String) - Constructor for class ptolemy.actor.TypedAtomicActor
Create a new actor in the specified container with the specified name.
TypedCompositeActor - Class in ptolemy.actor
A TypedCompositeActor is an aggregation of typed actors.
TypedCompositeActor() - Constructor for class ptolemy.actor.TypedCompositeActor
Construct a TypedCompositeActor in the default workspace with no container and an empty string as its name.
TypedCompositeActor(Workspace) - Constructor for class ptolemy.actor.TypedCompositeActor
Construct a TypedCompositeActor in the specified workspace with no container and an empty string as a name.
TypedCompositeActor(CompositeEntity, String) - Constructor for class ptolemy.actor.TypedCompositeActor
Construct a TypedCompositeActor with a name and a container.
TypedIOPort - Class in ptolemy.actor
An IOPort with a type.
TypedIOPort() - Constructor for class ptolemy.actor.TypedIOPort
Construct a TypedIOPort with no container and no name that is neither an input nor an output.
TypedIOPort(Workspace) - Constructor for class ptolemy.actor.TypedIOPort
Construct a port in the specified workspace with an empty string as a name.
TypedIOPort(ComponentEntity, String) - Constructor for class ptolemy.actor.TypedIOPort
Construct a TypedIOPort with a containing actor and a name that is neither an input nor an output.
TypedIOPort(ComponentEntity, String, boolean, boolean) - Constructor for class ptolemy.actor.TypedIOPort
Construct a TypedIOPort with a container and a name that is either an input, an output, or both, depending on the third and fourth arguments.
TypedIOPort.RunTimeTypeCheckException - Exception in ptolemy.actor
Exception class for run-time type errors.
TypedIORelation - Class in ptolemy.actor
This class overrides some of the methods in IORelation to ensure that TypedIOPorts are only connected to TypedIOPorts.
TypedIORelation() - Constructor for class ptolemy.actor.TypedIORelation
Construct a relation in the default workspace with an empty string as its name.
TypedIORelation(Workspace) - Constructor for class ptolemy.actor.TypedIORelation
Construct a relation in the specified workspace with an empty string as a name.
TypedIORelation(CompositeEntity, String) - Constructor for class ptolemy.actor.TypedIORelation
Construct a relation with the given name contained by the specified entity.
TypedTestActor - Class in ptolemy.actor.test
A TypedTestActor is a simple atomic actor that is used for testing the actor package.
TypedTestActor(TypedCompositeActor, String) - Constructor for class ptolemy.actor.test.TypedTestActor
Create a new actor in the specified container with the specified name.
TypedTestProcessActor - Class in ptolemy.actor.process.test
A TypedTestProcessActor is a simple atomic actor that is used for testing the actor package constructs for Processes.
TypedTestProcessActor(TypedCompositeActor, String) - Constructor for class ptolemy.actor.process.test.TypedTestProcessActor
Create a new actor in the specified container with the specified name.
TypeEvent - Class in ptolemy.actor
A TypeEvent represents a type change on a Typeable object.
TypeEvent(Typeable, Type, Type) - Constructor for class ptolemy.actor.TypeEvent
Construct a TypeEvent, with the specified Typeable and the old and new types.
TypeLattice - Class in ptolemy.data.type
Type hierarchy for token classes.
TypeLattice() - Constructor for class ptolemy.data.type.TypeLattice
 
TypeListener - Interface in ptolemy.actor
An interface implemented by objects that are interested in being kept informed about type changes in a Typeable object.
TypeMapper - Class in org.kepler.dataproxy.datasource.opendap
Creates a mapping between DAP2 data types and teh kepler data model for use in configuring output ports on an Actor.
TypeMapper() - Constructor for class org.kepler.dataproxy.datasource.opendap.TypeMapper
 
typeName - Variable in class org.kepler.gis.actor.io.VectorReader
The feature type.
TypeOpaqueCompositeActor - Class in ptolemy.actor
A composite actor whose ports have types, but the actors inside are not required to be typed.
TypeOpaqueCompositeActor() - Constructor for class ptolemy.actor.TypeOpaqueCompositeActor
Construct an actor in the default workspace with an empty string as its name.
TypeOpaqueCompositeActor(Workspace) - Constructor for class ptolemy.actor.TypeOpaqueCompositeActor
Construct an actor in the specified workspace with an empty string as a name.
TypeOpaqueCompositeActor(CompositeEntity, String) - Constructor for class ptolemy.actor.TypeOpaqueCompositeActor
Create a new actor in the specified container with the specified name.
TypeOpaqueCompositeActorTableauFactory - Class in ptolemy.vergil.actor
A factory that creates graph editing tableaux for untyped models.
TypeOpaqueCompositeActorTableauFactory(NamedObj, String) - Constructor for class ptolemy.vergil.actor.TypeOpaqueCompositeActorTableauFactory
Create an factory with the given name and container.
Types - Class in org.kepler.ddp.actor.pattern
A class providing the Ptolemy types used between the pattern actors.
Types() - Constructor for class org.kepler.ddp.actor.pattern.Types
 
types() - Static method in class ptolemy.data.expr.Constants
Return a map from names to types, with the names sorted alphabetically.
typeStrings - Static variable in interface org.kepler.objectmanager.data.Domain
 
TypeTest - Class in ptolemy.actor.lib
An actor that can be used for regression test of the type resolution system.
TypeTest(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.TypeTest
Construct an actor with an input multiport.
TypeUtilities - Class in org.kepler.stratosphere.type
Utilities to convert between Stratosphere and Ptolemy types.
TypeUtilities() - Constructor for class org.kepler.stratosphere.type.TypeUtilities
 

U

uExpr() - Method in class ptolemy.moml.unit.UParser
 
uiXMLFile - Variable in class org.cipres.kepler.GUIRunCIPRes
The GUIGen xml file's path and name are defined in this parameter.
unary() - Method in class ptolemy.data.expr.PtParser
 
UnaryMathFunction - Class in ptolemy.actor.lib
Produce an output token on each firing with a value that is equal to the specified math function of the input.
UnaryMathFunction(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.UnaryMathFunction
Construct an actor with the given container and name.
unauthenticate(ProxyEntity) - Method in class org.kepler.authentication.AuthenticationService
Unauthenticate a user
unauthenticate(ProxyEntity) - Method in class org.kepler.authentication.GAMAAuthenticationService
 
unauthenticate(ProxyEntity) - Method in class org.kepler.authentication.LDAPAuthenticationService
 
UNBOUNDED_INTTOKEN - Static variable in class ptolemy.domains.sdf.kernel.SDFDirector
The UNBOUNDED iterations choice is equivalent to IntToken.ZERO.
UNBOUNDED_NAME - Static variable in class ptolemy.domains.sdf.kernel.SDFDirector
The name of the UNBOUNDED iterations parameter choice: "UNBOUNDED".
uncaughtException(Thread, Throwable) - Method in class ptolemy.util.MessageHandler
Handle uncaught exceptions in a standard way.
uncodedRate - Variable in class ptolemy.actor.lib.comm.ConvolutionalCoder
Integer defining the number of bits that the shift register takes in each firing.
uncodedRate - Variable in class ptolemy.actor.lib.comm.HammingCoder
Integer defining the uncode block size.
uncodedRate - Variable in class ptolemy.actor.lib.comm.HammingDecoder
Integer defining the uncode block size.
uncodedRate - Variable in class ptolemy.actor.lib.comm.ViterbiDecoder
Integer defining the number of bits produced at the output in each firing.
unCompressCacheItem() - Method in class org.ecoinformatics.seek.datasource.EcogridCompressedDataCacheItem
This is an abracted method for uncompress cache item.
unCompressCacheItem() - Method in class org.ecoinformatics.seek.datasource.EcogridGZippedDataCacheItem
This method overwrite the super class - EcogridCompressedDataCacheItem.
unCompressCacheItem() - Method in class org.ecoinformatics.seek.datasource.EcogridTarArchivedDataCacheItem
This method will specifically to untar a cache item.
unCompressCacheItem() - Method in class org.ecoinformatics.seek.datasource.EcogridZippedDataCacheItem
This method overwirtes the super class.
unCompressedCacheItemDir - Variable in class org.ecoinformatics.seek.datasource.EcogridCompressedDataCacheItem
 
unCompressedFileList - Variable in class org.ecoinformatics.seek.datasource.EcogridCompressedDataCacheItem
 
unCompressedFilePath - Variable in class org.ecoinformatics.seek.datasource.EcogridCompressedDataCacheItem
 
UndeferredGraphicalMessageHandler - Class in ptolemy.gui
This is a message handler that reports errors in a graphical dialog box.
UndeferredGraphicalMessageHandler() - Constructor for class ptolemy.gui.UndeferredGraphicalMessageHandler
 
UndefinedConstantOrIdentifierException - Exception in ptolemy.data.expr
Thrown on an attempt to evaluate an expression that contains an unknown constant or identifier.
UndefinedConstantOrIdentifierException(String) - Constructor for exception ptolemy.data.expr.UndefinedConstantOrIdentifierException
Constructs an Exception with a detail message that includes the name of the first argument.
UNDEFINEDKEY - Static variable in interface org.kepler.objectmanager.data.db.DSTableKeyIFace
Indicates a Undefined Key Type
undo() - Method in class ptolemy.gui.UndoListener
Perform an undo.
undo() - Method in class ptolemy.kernel.undo.UndoStackAttribute
Remove the top undo action and execute it.
undo() - Method in class ptolemy.plot.EditablePlot
Undo the latest signal editing operation, if there was one.
undo() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Undo the last undoable change on the model.
undoableEditHappened(UndoableEditEvent) - Method in class ptolemy.gui.UndoListener
Remember the edit and update the action state.
UndoAction() - Constructor for class ptolemy.gui.UndoListener.UndoAction
 
UndoAction - Interface in ptolemy.kernel.undo
This interface represents an undo or redo action that is maintained on an undo/redo stack, such as that maintained by UndoStackAttribute.
UndoActionsList - Class in ptolemy.kernel.undo
This class contains a sequential list of UndoAction instances that can be executed in order.
UndoActionsList(UndoAction) - Constructor for class ptolemy.kernel.undo.UndoActionsList
Create an undo action with the specified action to be executed first.
UndoActionTest - Class in ptolemy.kernel.undo.test
Test of UndoActin, an interface represents an undo or redo action that is maintained on an undo/redo stack, such as that maintained by UndoStackAttribute.
UndoActionTest(String) - Constructor for class ptolemy.kernel.undo.test.UndoActionTest
Create a UndoActionTest.
UndoChangeRequest - Class in ptolemy.kernel.undo
A change request to undo.
UndoChangeRequest(Object, NamedObj) - Constructor for class ptolemy.kernel.undo.UndoChangeRequest
Construct a change request to be executed in the specified context.
UndoContext - Class in ptolemy.moml
Holds information about the current undo context.
UndoContext(boolean) - Constructor for class ptolemy.moml.UndoContext
Create a new UndoContext which may or may not need undo MoML generated.
UndoLayoutAction - Class in ptolemy.vergil.basic.layout.kieler
An undo action that is able to revert the changes made by automatic layout, or to repeat them in the case of redo.
UndoLayoutAction(NamedObj) - Constructor for class ptolemy.vergil.basic.layout.kieler.UndoLayoutAction
Create an undo action for automatic layout.
UndoListener - Class in ptolemy.gui
An Undo/Redo listener for use with a JTextComponent.
UndoListener() - Constructor for class ptolemy.gui.UndoListener
Construct an undo listener.
UndoListener(JTextComponent) - Constructor for class ptolemy.gui.UndoListener
Construct an undo listener with default key mappings.
UndoListener() - Constructor for class ptolemy.plot.EditablePlot.UndoListener
 
UndoListener.RedoAction - Class in ptolemy.gui
Perform the redo action.
UndoListener.UndoAction - Class in ptolemy.gui
Perform the undo action.
UndoStackAttribute - Class in ptolemy.kernel.undo
This attribute holds the undo/redo information for a model.
UndoStackAttribute(NamedObj, String) - Constructor for class ptolemy.kernel.undo.UndoStackAttribute
Construct an attribute with the given name contained by the specified container.
UNEDITABLE_CELL_COLOR - Static variable in class ptolemy.actor.gui.PortConfigurerDialog
The background color of an uneditable cell.
unescape(String) - Static method in class org.json.Cookie
Convert %hh sequences to single characters, and convert plus to space.
unescapeDelimiter(String) - Static method in class org.kepler.util.DelimitedReader
Convert a string escaped representation of a delimiter character into an the actual String for that delimiter.
unescapeForXML(String) - Static method in class ptolemy.util.StringUtilities
Given a string, replace all the instances of XML entities with their corresponding XML special characters.
unfixValue() - Method in class ptolemy.graph.test.TestConstant
Do nothing.
unfixValue() - Method in class ptolemy.graph.test.TestVariable
Allow the value of this term to be changed.
Uniform - Class in ptolemy.actor.lib
Produce a random sequence with a uniform distribution.
Uniform(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Uniform
Construct an actor with the given container and name.
union(Precision, Precision) - Static method in class ptolemy.math.Precision
Return the precision that is the maximum of the two supplied precisions in both the length and exponent.
unionConstruct() - Method in class ptolemy.data.expr.PtParser
 
UnionDisassembler - Class in ptolemy.actor.lib
On each firing, read one UnionToken from the input port and send out the value to the output port that matches the label name of the input token.
UnionDisassembler(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.UnionDisassembler
Construct a UnionDisassembler with the given container and name.
UnionFeatureCollection - Class in org.kepler.gis.data
A process providing the union between two feature collections
UnionFeatureCollection() - Constructor for class org.kepler.gis.data.UnionFeatureCollection
 
UnionMerge - Class in ptolemy.actor.lib
On each firing, read all tokens from every input port and wrap each token into a UnionToken of which the label matches the name of the originating input port.
UnionMerge(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.UnionMerge
Construct an actor in the specified container with the specified name.
UnionToken - Class in ptolemy.data
A token that contains a label/token pairs.
UnionToken(String, Token) - Constructor for class ptolemy.data.UnionToken
Construct a UnionToken with the specified label and value.
UnionToken(String) - Constructor for class ptolemy.data.UnionToken
Construct a UnionToken from the specified string.
UnionType - Class in ptolemy.data.type
A class representing the type of a UnionToken.
UnionType(String[], Type[]) - Constructor for class ptolemy.data.type.UnionType
Construct a new UnionType with the specified labels and types.
uniqueEntityName() - Method in class ptolemy.kernel.test.TestCompositeEntity
 
UNIQUEKEY - Static variable in interface org.kepler.objectmanager.data.db.Constraint
 
UniqueKey - Class in org.kepler.objectmanager.data.db
This class represents a unique key constraint in eml.
UniqueKey() - Constructor for class org.kepler.objectmanager.data.db.UniqueKey
 
UNIQUEKEYSTRING - Static variable in interface org.kepler.objectmanager.data.db.Constraint
 
uniqueName(String) - Method in class org.kepler.sms.actors.MergeActor
Overriden from NamedObj ...
uniqueName(String, Component) - Method in class org.mlc.swing.layout.FormEditor
 
uniqueName(String) - Method in class ptolemy.actor.LazyTypedCompositeActor
Return a name that is guaranteed to not be the name of any contained attribute, port, class, entity, or relation.
uniqueName(String) - Method in class ptolemy.kernel.CompositeEntity
Return a name that is guaranteed to not be the name of any contained attribute, port, class, entity, or relation.
uniqueName(String) - Method in class ptolemy.kernel.Entity
Return a name that is guaranteed to not be the name of any contained attribute or port.
uniqueName(String) - Method in class ptolemy.kernel.util.NamedObj
Return a name that is guaranteed to not be the name of any contained attribute.
unit - Variable in class ptolemy.actor.lib.ModifyDate
Unit of value to be added or subtracted.
Unit - Class in ptolemy.moml.unit
Class that contains the internal representation of a Unit.
Unit() - Constructor for class ptolemy.moml.unit.Unit
Create a Unit with no name and the unitless type.
Unit(BaseUnit) - Constructor for class ptolemy.moml.unit.Unit
Create a Unit from a BaseUnit.
Unit(String) - Constructor for class ptolemy.moml.unit.Unit
Create a Unit with a specified name, and the unitless type.
unit() - Method in class ptolemy.moml.unit.UParser
 
UnitAttribute - Class in ptolemy.moml.unit
This class is used to implement the Unit Attribute.
UnitAttribute() - Constructor for class ptolemy.moml.unit.UnitAttribute
Construct a UnitsAttribute with no specific name, or container.
UnitAttribute(NamedObj, String) - Constructor for class ptolemy.moml.unit.UnitAttribute
Construct a UnitsAttribute with the specified name, and container.
UnitCategory - Class in ptolemy.data.unit
A property that specifies the category of a base unit.
UnitCategory() - Constructor for class ptolemy.data.unit.UnitCategory
Construct a unit category in the default workspace with an empty string as its name.
UnitCategory(Workspace) - Constructor for class ptolemy.data.unit.UnitCategory
Construct an attribute in the specified workspace with an empty string as a name.
UnitCategory(NamedObj, String) - Constructor for class ptolemy.data.unit.UnitCategory
Construct a unit category property with the given name contained by the specified entity.
UnitConstraint - Class in ptolemy.moml.unit
 
UnitConstraint(String) - Constructor for class ptolemy.moml.unit.UnitConstraint
 
UnitConstraint(UnitExpr, String, UnitExpr) - Constructor for class ptolemy.moml.unit.UnitConstraint
 
UnitConstraints - Class in ptolemy.moml.unit
UnitConstraints represents a group, with duplicates allowed, of UnitConstraints.
UnitConstraints() - Constructor for class ptolemy.moml.unit.UnitConstraints
Construct an empty collection of Unit constraints.
UnitConstraints(TypedCompositeActor, Vector, Vector) - Constructor for class ptolemy.moml.unit.UnitConstraints
Construct a collection of Unit constraints from the specified componentEntities and relations of a model.
UnitConstraintsDialog - Class in ptolemy.vergil.unit
Unit Constraints Dialog.
UnitConstraintsDialog(DialogTableau, Frame, Entity, Configuration) - Constructor for class ptolemy.vergil.unit.UnitConstraintsDialog
Construct a dialog that presents Unit constraints as a table.
UnitConverter - Interface in com.jgoodies.forms.util
An interface that describes how to convert general sizes to pixel sizes.
UnitEquation - Class in ptolemy.moml.unit
A Unit equation is a particular type of Unit constraint, another type being a Unit inequality.
UnitEquation(UnitExpr, UnitExpr) - Constructor for class ptolemy.moml.unit.UnitEquation
Construct a UnitEquation from the left and right hand sides.
UnitExpr - Class in ptolemy.moml.unit
A UnitExpr contains UnitTerms.
UnitExpr() - Constructor for class ptolemy.moml.unit.UnitExpr
Construct an empty (i.e. no UnitTerms) UnitExpr.
UnitExpr(IOPort) - Constructor for class ptolemy.moml.unit.UnitExpr
Construct a UnitTerm from an IOPort.
UnitInEquality - Class in ptolemy.moml.unit
A place holder for the day there is a UnitInEquality
UnitInEquality(UnitExpr, UnitExpr) - Constructor for class ptolemy.moml.unit.UnitInEquality
Construct a UnitInEquality from the left and right hand sides.
UNITLABEL - Static variable in interface ptolemy.moml.unit.UParserConstants
RegularExpression Id.
UnitLibrary - Class in ptolemy.moml.unit
A Library containing definitions of commonly used units.
UnitLibrary() - Constructor for class ptolemy.moml.unit.UnitLibrary
 
UnitPresentation - Interface in ptolemy.moml.unit
The methods necessary to present Units, UnitConstraints, UnitExprs, etc. so that developers, and humans can understand the results generated by the system.
units - Variable in class ptolemy.actor.lib.conversions.InUnitsOf
The units to which the input tokens will be converted.
UnitSolverDialog - Class in ptolemy.vergil.unit
Dialog for the Unit Solver.
UnitSolverDialog(DialogTableau, Frame, Entity, Configuration) - Constructor for class ptolemy.vergil.unit.UnitSolverDialog
Construct a Unit Solver Dialog.
UnitSolverDialog.SolutionListModel - Class in ptolemy.vergil.unit
List of solutions.
UnitSolverDialogAction() - Constructor for class ptolemy.vergil.basic.BasicGraphController.UnitSolverDialogAction
Construct an action that will create a UnitSolverDialog.
unitsString() - Method in class ptolemy.data.ScalarToken
Return the string representation of the units of this token.
unitsString(int[]) - Static method in class ptolemy.data.unit.UnitUtilities
Return the string representation of the given array of units.
UnitSystem - Class in ptolemy.data.unit
A unit system as defined by a set of base and derived units.
UnitSystem(NamedObj, String) - Constructor for class ptolemy.data.unit.UnitSystem
Construct a unit system with the given name contained by the specified entity.
UnitTerm - Class in ptolemy.moml.unit
UnitTerm represents a term in a Unit Expression.
UnitTerm() - Constructor for class ptolemy.moml.unit.UnitTerm
Construct a UnitTerm with no element.
UnitTerm(Unit) - Constructor for class ptolemy.moml.unit.UnitTerm
Construct an instance where the contained element is a Unit.
UnitUtilities - Class in ptolemy.data.unit
A set of manipulation routines that are useful for factoring most of the difficulty of dealing with units out of individual token classes.
UNKNOWN - Static variable in class org.kepler.objectmanager.cache.DataCacheFileObject
 
UNKNOWN - Static variable in class org.kepler.sms.SMSServices
 
UNKNOWN - Static variable in class ptolemy.data.type.BaseType
The bottom element of the data type lattice.
UNKNOWN - Static variable in class ptolemy.math.Rounding
Singleton implementing unknown rounding strategy.
UnknownResultException - Exception in ptolemy.data.expr
Thrown on an attempt to evaluate an expression that can not be determined because some variables are unknown.
UnknownResultException(String) - Constructor for exception ptolemy.data.expr.UnknownResultException
Constructs an Exception with a detail message.
UnknownResultException(Nameable) - Constructor for exception ptolemy.data.expr.UnknownResultException
Constructs an Exception with a detail message that is only the name of the argument.
UnknownResultException(Nameable, String) - Constructor for exception ptolemy.data.expr.UnknownResultException
Constructs an Exception with a detail message that includes the name of the first argument.
UnknownToken - Class in ptolemy.data.expr
This is a token that reports its type as "unknown."
UnknownToken() - Constructor for class ptolemy.data.expr.UnknownToken
 
unlink(int) - Method in class ptolemy.actor.IOPort
Unlink whatever relation is currently linked at the specified index number.
unlink(Relation) - Method in class ptolemy.actor.IOPort
Unlink the specified Relation.
unlink(Relation) - Method in class ptolemy.kernel.ComponentPort
Unlink the specified Relation.
unlink(int) - Method in class ptolemy.kernel.Port
Unlink whatever relation is currently linked at the specified index number.
unlink(Relation) - Method in class ptolemy.kernel.Port
Unlink the specified Relation.
unlink(Relation) - Method in class ptolemy.kernel.Relation
Unlink the specified Relation.
unlink(int) - Method in class ptolemy.kernel.util.CrossRefList
Delete the link at the specified index.
unlink(Object) - Method in class ptolemy.kernel.util.CrossRefList
Delete all links to the specified container.
unlinkAll() - Method in class ptolemy.actor.IOPort
Unlink all relations that are linked on the outside.
unlinkAll() - Method in class ptolemy.kernel.ComponentPort
Unlink all outside links.
unlinkAll() - Method in class ptolemy.kernel.ComponentRelation
Override the base class to break inside links on ports as well as outside lists.
unlinkAll() - Method in class ptolemy.kernel.Port
Unlink all relations.
unlinkAll() - Method in class ptolemy.kernel.Relation
Unlink all ports and relations that are directly linked to this relation.
unlinkAll() - Method in class ptolemy.kernel.util.CrossRefList
Delete all cross references.
unlinkAllInside() - Method in class ptolemy.actor.IOPort
Unlink all relations that are linked on the inside.
unlinkAllInside() - Method in class ptolemy.kernel.ComponentPort
Unlink all inside links.
unlinkInside(int) - Method in class ptolemy.actor.IOPort
Unlink whatever relation is currently linked on the inside with the specified index number.
unlinkInside(Relation) - Method in class ptolemy.actor.IOPort
Unlink the specified Relation on the inside.
unlinkInside(int) - Method in class ptolemy.kernel.ComponentPort
Unlink whatever relation is currently linked on the inside with the specified index number.
unlinkInside(Relation) - Method in class ptolemy.kernel.ComponentPort
Unlink the specified relation on the inside.
unlinkToPublishedPort(String, IOPort) - Method in class ptolemy.actor.CompositeActor
Unlink the subscriberPort with a already registered "published port" coming from a publisher.
unlinkToPublishedPort(String, IOPort, boolean) - Method in class ptolemy.actor.CompositeActor
Unlink the subscriberPort with a already registered "published port" coming from a publisher.
unlinkToPublishedPort(Pattern, TypedIOPort) - Method in class ptolemy.actor.CompositeActor
Unlink the subscriberPort with a already registered "published port" coming from a publisher.
unlinkToPublishedPort(Pattern, TypedIOPort, boolean) - Method in class ptolemy.actor.CompositeActor
Unlink the subscriberPort with a already registered "published port" coming from a publisher.
unlistenForEvent(FiringEvent.FiringEventType) - Method in class ptolemy.vergil.debugger.DebugProfile
Remove this FiringEventType from the DebugProfile.
UnloadModelTest - Class in ptolemy.moml.test
Test unloading a model.
UnloadModelTest(String) - Constructor for class ptolemy.moml.test.UnloadModelTest
Parse the xml file and run it.
UnloadModelTest.UnloadThread - Class in ptolemy.moml.test
Wait for the run to finish and the unload the model.
UnloadThread() - Constructor for class ptolemy.moml.test.UnloadModelTest.UnloadThread
 
unnamedIdPattern - Static variable in class org.kepler.util.RenameUtil
Regular expression pattern of Unnamed effigy ids.
UNNECESSARY - Static variable in class ptolemy.math.Rounding
Singleton implementing unnecessary rounding strategy.
UnrecognizedDocumentTypeException - Exception in org.ecoinformatics.seek.ecogrid.exception
This class express a exception that a document type (namespace) which doesn't have a metadata specification java implement class
UnrecognizedDocumentTypeException(String) - Constructor for exception org.ecoinformatics.seek.ecogrid.exception.UnrecognizedDocumentTypeException
Constructor
unregisterHandler() - Method in class org.kepler.webview.actor.WebViewAttribute
Stop listening for events from clients.
unregisterPublisherPort(String, IOPort) - Method in class ptolemy.actor.CompositeActor
Unregister a "published port" coming from a publisher.
unregisterPublisherPort(String, IOPort, boolean) - Method in class ptolemy.actor.CompositeActor
Unregister a "published port" coming from a publisher.
UNRELATED_GAP_COLSPEC - Static variable in class com.jgoodies.forms.factories.FormFactory
Describes a logical horizontal gap between two unrelated components.
UNRELATED_GAP_ROWSPEC - Static variable in class com.jgoodies.forms.factories.FormFactory
Describes a logical vertical gap between two unrelated components.
UnresolvableTypeException - Exception in org.kepler.objectmanager.data
This exception is thrown when a type is not resolvable
UnresolvableTypeException(String) - Constructor for exception org.kepler.objectmanager.data.UnresolvableTypeException
 
unsatisfiedInequalities() - Method in class ptolemy.graph.InequalitySolver
Return an Iterator of Inequalities that are not satisfied with the current value of variables.
UNSIGNED_BYTE - Static variable in class ptolemy.data.type.BaseType
The unsigned byte data type.
UNSIGNED_INTEGER_GROUP - Static variable in class ptolemy.math.Precision.PrecisionFormat
Regular expression for a grouped unsigned integer.
unsignedByteArrayToArrayToken(byte[]) - Static method in class ptolemy.data.ArrayToken
Take an array of unsigned bytes and convert it to an ArrayToken.
UnsignedByteArrayToString - Class in ptolemy.actor.lib.conversions
Convert an array of bytes into a string.
UnsignedByteArrayToString(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.conversions.UnsignedByteArrayToString
Construct an actor with the given container and name.
UnsignedByteToken - Class in ptolemy.data
A token that contains a byte number in the range 0 through 255.
UnsignedByteToken() - Constructor for class ptolemy.data.UnsignedByteToken
Construct a token with byte 0.
UnsignedByteToken(byte) - Constructor for class ptolemy.data.UnsignedByteToken
Construct a UnsignedByteToken with the specified byte value.
UnsignedByteToken(int) - Constructor for class ptolemy.data.UnsignedByteToken
Construct a UnsignedByteToken with the specified integer value.
UnsignedByteToken(String) - Constructor for class ptolemy.data.UnsignedByteToken
Construct a UnsignedByteToken from the specified string.
unsignedConvert(byte) - Static method in class ptolemy.data.UnsignedByteToken
Convert a byte to an integer, treating the byte as an unsigned value in the range 0 through 255.
UNSIZED_FIX - Static variable in class ptolemy.data.type.BaseType
The unsized fix data type.
UnsizedArrayToken - Class in ptolemy.data
A token that represents an array.
UnsizedArrayToken(Type) - Constructor for class ptolemy.data.UnsizedArrayToken
Construct an empty array token with the given element type.
UnsizedFixToken - Class in ptolemy.data
A token that contains an instance of FixPoint.
UnsizedFixToken() - Constructor for class ptolemy.data.UnsizedFixToken
Construct a fixed-point token.
UnsizedFixToken(FixPoint) - Constructor for class ptolemy.data.UnsizedFixToken
Construct an UnsizedFixToken with the supplied FixPoint value.
UnWellFormedConstraintException - Exception in org.kepler.objectmanager.data.db
This exception is thrown when a constraint miss some requried fields
UnWellFormedConstraintException(String) - Constructor for exception org.kepler.objectmanager.data.db.UnWellFormedConstraintException
 
unwrap(double[]) - Static method in class ptolemy.math.SignalProcessing
Return a new array that is constructed from the specified array by unwrapping the angles.
unzip(File, File) - Static method in class org.geon.XMLToADN
 
unzipBegin(long, String) - Method in class org.kepler.modulemanager.gui.ModuleDownloadProgressMonitor
create a new progress bar when an unzip begins
unzipBegin(long, String) - Method in interface org.kepler.modulemanager.ModuleManagerEventListener
begin an unzip procedure
unzipEnd() - Method in class org.kepler.modulemanager.gui.ModuleDownloadProgressMonitor
get rid of the unzip progress bar
unzipEnd() - Method in interface org.kepler.modulemanager.ModuleManagerEventListener
end an unzip procedure
unzipUpdateProgress(long, int, int) - Method in class org.kepler.modulemanager.gui.ModuleDownloadProgressMonitor
update the progress of an unzip
unzipUpdateProgress(long, int, int) - Method in interface org.kepler.modulemanager.ModuleManagerEventListener
update the progress on an unzip procedure
UP - Static variable in class ptolemy.math.Rounding
Singleton implementing up rounding strategy.
UP - Static variable in class ptolemy.vergil.toolbox.MoveAction
Indicator for move up.
upArrow - Variable in class ptolemy.actor.lib.gui.ArrowKeySensor
Output port, which has type IntToken.
UParser - Class in ptolemy.moml.unit
This file implements a Unit parser for Ptolemy II using the JavaCC parser generator.
UParser() - Constructor for class ptolemy.moml.unit.UParser
 
UParser(InputStream) - Constructor for class ptolemy.moml.unit.UParser
Constructor with InputStream.
UParser(InputStream, String) - Constructor for class ptolemy.moml.unit.UParser
Constructor with InputStream and supplied encoding
UParser(Reader) - Constructor for class ptolemy.moml.unit.UParser
Constructor.
UParser(UParserTokenManager) - Constructor for class ptolemy.moml.unit.UParser
Constructor with generated Token Manager.
UParserConstants - Interface in ptolemy.moml.unit
Token literal values and constants.
UParserTokenManager - Class in ptolemy.moml.unit
Token Manager.
UParserTokenManager(SimpleCharStream) - Constructor for class ptolemy.moml.unit.UParserTokenManager
Constructor.
UParserTokenManager(SimpleCharStream, int) - Constructor for class ptolemy.moml.unit.UParserTokenManager
Constructor.
update(Observable, Object) - Method in class org.cipres.kepler.GUIRunCIPRes
Observer function update guiRunObj is the GUIRun object that runs the program obj is the String message that GUIRun object send back.
update(Observable, Object) - Method in class org.cipres.kepler.JRunCIPRes
Observer function update jRunObj is the jRun object that runs the program obj is the String message that jRun object send back.
update(EntityTreeModel) - Method in class org.ecoinformatics.seek.ecogrid.quicksearch.DatasetPanel
Update the result panel after searching
update() - Method in class org.kepler.cloudsharing.fs.FileSystemClient
Upload the results to Dropbox.
update(LibrarySearchResults) - Method in class org.kepler.gui.LibrarySearchResultPane
this method allows the search results to be updated in the panel
update(LibrarySearchResults) - Method in class org.kepler.gui.ResultHighlighter
this method allows the search results to be updated in the panel
update(EntityLibrary) - Method in class org.kepler.gui.ResultTreeRebuilder
Update the tree to display only a specific root.
update(LibrarySearchResults) - Method in class org.kepler.gui.ResultTreeRebuilder
this method allows the search results to be updated in the panel
update() - Method in class org.kepler.monitor.figure.BaseFigure
Updates the GUI according to the current state of this monitor.
update() - Method in class org.kepler.monitor.FigureUpdater
Updates the figure.
update() - Method in class org.kepler.plotting.DataTable
 
update() - Method in class org.kepler.sms.actors.MergeActor
 
update(Schedule[]) - Method in class org.kepler.workflowscheduler.gui.ExistingSchedulePanel
Handle the event that new schedules will replace the old ones
update(Schedule[]) - Method in class org.kepler.workflowscheduler.gui.ScheduleChangeController
Handle the event that new schedules will replace the old one.
update(Schedule[]) - Method in interface org.kepler.workflowscheduler.gui.ScheduleChangeListenerInterface
Handle the event that new schedules will replace the old ones
update(Schedule[]) - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerDialog
Handle the event that new schedules will replace the old ones
update(Schedule[]) - Method in class org.kepler.workflowscheduler.gui.WorkflowSchedulerParentPanel
Method for ScheduleChangeListener.
update() - Method in class ptolemy.actor.parameters.PortParameter
Check to see whether a token has arrived at the associated port, and if so, update the current value of parameter with that token.
update(int, Token) - Method in class ptolemy.data.ArrayToken
Return a new array with all elements equal to those of this array except the one at position index, which has value given by value.
update(Graphics) - Method in class ptolemy.media.Picture
Override the base class to prevent blanking, which causes flashing of the display.
update2(Object) - Method in class org.kepler.monitor.figure.QualityFigure
Updates the quality score value
UpdateActorTreeFiles - Class in org.kepler.loader.util
A class to update the KAR XMLs for actors, directors, etc.
UpdateActorTreeFiles() - Constructor for class org.kepler.loader.util.UpdateActorTreeFiles
 
UpdateAnnotations - Class in ptolemy.vergil.kernel.attributes
Update the annotations.
UpdateAnnotations() - Constructor for class ptolemy.vergil.kernel.attributes.UpdateAnnotations
 
updateButtonPanel() - Method in class org.ecoinformatics.seek.ecogrid.EcogridPreferencesTab
This method will re-add buttons to frame
updateContent() - Method in class org.kepler.moml.DocumentationAttribute
Deprecated.
 
updateContent() - Method in class ptolemy.kernel.util.Attribute
Update the content of this attribute.
updateContent() - Method in class ptolemy.vergil.basic.KeplerDocumentationAttribute
Method for configurable.
updateContent() - Method in class ptolemy.vergil.kernel.attributes.IDAttribute
Update the modification date of this attribute.
updateController() - Method in class org.ecoinformatics.seek.ecogrid.EcogridPreferencesTab
Method to update service in controller base on the user selection in the panel
UpdatedArrayToken - Class in ptolemy.data
A token that contains an array of tokens that is equal to another specified ArrayToken except at one location, where it has a new value.
UpdatedArrayToken(ArrayToken, int, Token) - Constructor for class ptolemy.data.UpdatedArrayToken
Construct an UpdatedArrayToken that is equal to the specified baseToken, except at index, where its value is newValue.
updateDataUsingWRMQuery(String, String, String, String, String, String, boolean) - Method in class org.kepler.workflowrunmanager.gui.WorkflowRunManagerTableModel
 
updateDefaultLsid(int, KeplerLSID) - Method in class org.kepler.objectmanager.library.LibIndex
Update the default LSID for the given LIID to the given LSID.
updateDocs(String, String, boolean, String, boolean, boolean) - Static method in class org.kepler.loader.util.UpdateActorTreeFiles
Create XML files for actor KARs.
updateDownloadProgress(int) - Method in class org.kepler.objectmanager.repository.KARDownloader
 
UpdatedValueIcon - Class in ptolemy.vergil.icon
An icon that displays the value of an attribute of the container, updating it as the value of the value of the attribute is updated.
UpdatedValueIcon(NamedObj, String) - Constructor for class ptolemy.vergil.icon.UpdatedValueIcon
Create a new icon with the given name in the given container.
updateEnvironment(String, String) - Static method in class ptolemy.util.StreamExec
Update the environment and return the results.
updateExecutionChoices() - Method in class org.kepler.ddp.actor.ExecutionChoice
Update the execution choices in the control parameter.
updateFile - Variable in class ptolemy.actor.lib.Dictionary
If set to true, and if a file parameter is given, then upon each update to the dictionary, the contents of the dictionary will be stored in the file.
updateFrameComponents(KeplerGraphFrame.Components) - Method in interface org.kepler.gui.KeplerGraphFrameUpdater
Update the components.
updateFrameComponents(KeplerGraphFrame.Components) - Method in class org.kepler.module.cloudsharing.Initialize
Update the components.
updateFrameComponents(KeplerGraphFrame.Components) - Method in class org.kepler.module.gui.Initialize
Update the components.
updateFrameComponents(KeplerGraphFrame.Components) - Method in class org.kepler.module.provenance.Initialize
Update the components.
updateFrameComponents(KeplerGraphFrame.Components) - Method in class org.kepler.module.reporting.Initialize
Update the components.
updateFrameComponents(KeplerGraphFrame.Components) - Method in class org.kepler.module.workflowrunmanager.Initialize
Update the components.
updateFrameComponents(KeplerGraphFrame.Components) - Method in class org.kepler.reporting.gui.ReportViewerPanel
 
updateFrameComponents(KeplerGraphFrame.Components) - Method in class org.kepler.workflowrunmanager.gui.WorkflowRunManagerPanel
 
updateFrameComponents(KeplerGraphFrame.Components) - Method in class org.kepler.workflowrunmanager.WorkflowRunManagerManager
 
updateFromExisting(KeplerDocumentationAttribute, boolean) - Method in class ptolemy.vergil.basic.KeplerDocumentationAttribute
Update the documentation fields of this object from another KeplerDocumentationAttribute.
updateHistory(String) - Method in class org.kepler.gui.KeplerGraphFrame
Update the History menu.
updateHistoryAndLastDirectory(boolean) - Method in class org.kepler.gui.kar.ImportModuleDependenciesAction
Change whether or not to update Kepler's Recent Files menu, and last directory setting.
updateHistoryAndLastDirectory(boolean) - Method in class org.kepler.gui.kar.OpenArchiveAction
Change whether or not to update Kepler's Recent Files menu, and last directory setting.
updateJobEntry(String, Map) - Method in class org.geon.LidarJobDB
 
updateKarXMLDocsForFile(String[]) - Static method in class org.kepler.loader.util.UpdateActorTreeFiles
 
updateKarXMLDocsForModule(String) - Static method in class org.kepler.loader.util.UpdateActorTreeFiles
Update the KAR XML documentation for a module.
updateLayout(Component) - Method in class org.mlc.swing.layout.FormEditor
 
updateLayout(Component) - Method in class ptolemy.actor.gui.run.PtolemyFormEditor
Update the layout for the specified component.
UpdateLineColumn(char) - Method in class ptolemy.data.expr.SimpleCharStream
 
UpdateLineColumn(char) - Method in class ptolemy.moml.unit.SimpleCharStream
 
updateList() - Method in class org.mlc.swing.layout.FormEditor
 
updateLSID(String, NamedObj) - Method in class org.ecoinformatics.seek.sms.KeplerLocalLSIDService
Updates a previously assigned lsid to be assigned the given object.
updateLsidRevision(KeplerLSID) - Method in class org.kepler.objectmanager.lsid.LSIDGenerator
Update the revision of a KeplerLSID.
updateMinorVersion(int) - Method in class org.kepler.util.sql.DatabaseType
Update the minor version in version table.
updateObject(CacheObjectInterface) - Method in class org.kepler.objectmanager.cache.CacheManager
update a CacheObjectInterface in the cache.
updatePlotManually(Row) - Method in interface org.kepler.plotting.PlottingController
 
updateProgress(int, int, int, InputStream) - Method in class org.kepler.modulemanager.gui.ModuleDownloadProgressMonitor
update progress for the progress monitor
updateProgress(int, int, int, InputStream) - Method in interface org.kepler.modulemanager.ModuleManagerEventListener
update the listener on the status of the download
updateRegistryEntry(String, KeplerLSID) - Method in class org.kepler.objectmanager.repository.EcogridRepository
update an ecogrid registry entry.
updateRevision() - Method in class org.kepler.moml.NamedObjId
The updateRevision() method is used to retrieve the next available revision from the LSIDGenerator and updates the revision accordingly.
updateService(EcoGridService) - Method in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
Method to update a existed EcoGridService
updateSize() - Method in interface ptolemy.actor.lib.gui.PlotterBaseInterface
Update size attribute of the plotter.
updateSize() - Method in class ptolemy.actor.lib.gui.PlotterBaseJavaSE
Update size attribute of the plotter.
updateStatusBar(String) - Method in class ptolemy.gui.JTextAreaExec
Update the status area with the text message.
updateStatusBar(String) - Method in interface ptolemy.util.ExecuteCommands
Set the text of the status bar.
updateStatusBar(String) - Method in class ptolemy.util.StreamExec
Set the text of the status bar.
updateTabsForComposite(CompositeEntity) - Method in class org.kepler.gui.frame.TabbedKeplerGraphFrame
Update the nested tabs displayed for a composite actor.
UpdateType - Enum in org.kepler.plotting
Created by IntelliJ IDEA.
updateType(StructuredType) - Method in class ptolemy.data.type.ArrayType
Update this Type to the specified ArrayType.
updateType(StructuredType) - Method in class ptolemy.data.type.FixType
Update this StructuredType to the specified Structured Type.
updateType(StructuredType) - Method in class ptolemy.data.type.FunctionType
Update this type to the specified FunctionType.
updateType(StructuredType) - Method in class ptolemy.data.type.MatrixType
Update this StructuredType to the specified Structured Type.
updateType(StructuredType) - Method in class ptolemy.data.type.RecordType
Update this Type to the specified RecordType.
updateType(StructuredType) - Method in class ptolemy.data.type.StructuredType
Update this StructuredType to the specified Structured Type.
updateType(StructuredType) - Method in class ptolemy.data.type.TupleType
Update this type to the specified TupleType.
updateType(StructuredType) - Method in class ptolemy.data.type.UnionType
Update this Type to the specified UnionType.
updateWindowAndSizeAttributes() - Method in interface ptolemy.actor.lib.gui.PlotterBaseInterface
Update values of the attributes.
updateWindowAndSizeAttributes() - Method in class ptolemy.actor.lib.gui.PlotterBaseJavaSE
Update values of the attributes.
updateWindowAttributes() - Method in class org.kepler.gui.frame.TabbedKeplerGraphFrame
Update the size, zoom and position of all the open tabs.
updateWindowAttributes() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Update the size, zoom and position of the window.
Upgrade - Class in org.kepler.provenance.sql
 
Upgrade() - Constructor for class org.kepler.provenance.sql.Upgrade
 
UpgradeDialogPanel - Class in org.kepler.modulemanager.gui.patch
Created by David Welker.
UpgradeDialogPanel(List<ModulePair>) - Constructor for class org.kepler.modulemanager.gui.patch.UpgradeDialogPanel
 
upload(KARFile) - Method in class org.kepler.gui.kar.ComponentUploader
Upload a kar file and generated kaxml to the repository.
upload(KARFile, String) - Method in class org.kepler.gui.kar.ComponentUploader
Upload a kar file and associated metadata to a repository
uploadedFiles - Variable in class org.srb.SPut
Paths to the remote location.
uploadFile() - Method in class org.kepler.kar.UploadToRepository
uploads a single object to the repository
uploadFiles(File) - Method in class org.kepler.reporting.ReportingListener
Upload karFile and karXML metadata (and two associated access docs) to repository.
UploadingKARFileListenerInterface - Interface in org.kepler.workflowscheduler.gui
A listener interface to handle the finishing the kar file upload
UploadingKARFileSwingWorker - Class in org.kepler.workflowscheduler.gui
A Swing worker class to do uploading a kar file job
UploadingKARFileSwingWorker(KARFile, String, String, String, String, ScheduleChangeController, TableauFrame) - Constructor for class org.kepler.workflowscheduler.gui.UploadingKARFileSwingWorker
Constructor
uploadKAR(File, String, boolean) - Method in class org.kepler.provenance.kar.UploadKarToRepositoryNoGUI
uploads KAR to the repository
UploadKarToRepositoryNoGUI - Class in org.kepler.provenance.kar
'$Author: tao $' '$Date: 2012-06-07 21:03:38 +0000 (Thu, 07 Jun 2012) $' '$Revision: 29892 $' For Details: http://www.kepler-project.org Copyright (c) 2009-2010 The Regents of the University of California.
UploadKarToRepositoryNoGUI() - Constructor for class org.kepler.provenance.kar.UploadKarToRepositoryNoGUI
Constructor
uploadMetadata(String) - Method in class org.kepler.kar.UploadToRepository
Use the given NamedObj to generate the metadata for metacat.
UploadToRepository - Class in org.kepler.kar
This action imports a kar file to the system
UploadToRepository(File) - Constructor for class org.kepler.kar.UploadToRepository
Constructor
upperBound - Variable in class org.kepler.date.RandomDate
The upper bound of the date.
upperBound - Variable in class org.kepler.spark.mllib.SparkSQLQuery
upper bound for partitioning
upperBound - Variable in class ptolemy.actor.lib.Accumulator
The upper bound.
upperBound - Variable in class ptolemy.actor.lib.Uniform
The upper bound.
UpSample - Class in ptolemy.domains.sdf.lib
This actor upsamples an input stream by an integer factor by inserting tokens with value zero.
UpSample(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.UpSample
Construct an actor with the given container and name.
upsample(double[], int) - Static method in class ptolemy.math.SignalProcessing
Return a new array that is the result of inserting (n-1) zeroes between each successive sample in the input array, resulting in an array of length n * L, where L is the length of the original array.
upSet(Object) - Method in interface ptolemy.graph.CPO
Compute the up-set of an element in this CPO.
upSet(Object) - Method in class ptolemy.graph.DirectedAcyclicGraph
Compute the up-set of an element in this CPO.
uri - Variable in class ptolemy.actor.gui.Effigy
The URI for the effigy.
uri - Variable in class ptolemy.actor.gui.PlotTableau
The URI to display.
URIAttribute - Class in ptolemy.kernel.attributes
An attribute that identifies the URI from which the container was read.
URIAttribute(NamedObj, String) - Constructor for class ptolemy.kernel.attributes.URIAttribute
Construct an attribute with the given name contained by the specified container.
url - Variable in class org.geon.FileWrite
Written file URL
url - Variable in class org.geon.FTPClient
URL of the uploaded/downloaded file.
url - Variable in class org.geon.URLExists
The verified URL.
url - Variable in class org.kepler.hadoop.actor.HDFSLoader
Written file URL
url - Variable in class org.kepler.hadoop.actor.HDFSUnLoader
Written file URL
url - Variable in class org.kepler.hadoop.actor.HDFSWriter
Written file URL
URL - Static variable in class org.kepler.module.workflowschedulergui.Initialize
 
URL - Static variable in class org.kepler.workflowscheduler.gui.SchedulerAbstractAction
 
url - Variable in class ptolemy.actor.gui.HTMLViewerTableau
The URL to display.
url() - Method in class ptolemy.util.FileUtilities.StreamAndURL
Return the url.
URLAPPENDIX - Static variable in class org.kepler.workflowscheduler.gui.configurationwizard.WorkflowRunEngineConfigurationDialog
 
URLDirectoryReader - Class in ptolemy.actor.lib
Deprecated.
Use DirectoryListing instead.
URLDirectoryReader(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.URLDirectoryReader
Deprecated.
Construct an actor with the given container and name.
URLExists - Class in org.geon
Assert whether a given URL exists
URLExists(CompositeEntity, String) - Constructor for class org.geon.URLExists
Construct an actor with the given container and name.
URLHyperLinkListener - Class in org.kepler.workflowscheduler.gui
A class to handle url link.
URLHyperLinkListener(TableauFrame) - Constructor for class org.kepler.workflowscheduler.gui.URLHyperLinkListener
Constructor
URLReader - Class in ptolemy.actor.lib
This actor reads tokens from an URL, and output them.
URLReader(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.URLReader
Construct an actor with the given container and name.
URLToImage - Class in ptolemy.actor.lib.image
An actor that reads a String input token naming a URL and outputs an Object Token that contains a java.awt.Image It is possible to load a file from the local file system by using the prefix "file://" instead of "http://".
URLToImage(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.image.URLToImage
Construct an actor with the given container and name.
urlValue - Variable in class org.camera.service.CAMERAURLProcessor
 
usageString(String, String[][], String[]) - Static method in class ptolemy.util.StringUtilities
Return a string that contains a description of how to use a class that calls this method.
usageString(String, String[][], String[][]) - Static method in class ptolemy.util.StringUtilities
Return a string that contains a description of how to use a class that calls this method.
useAsCombiner - Variable in class org.kepler.ddp.actor.pattern.Reduce
If true, use the sub-workflow or execution class to pre-reduce the data.
useCurrentTimeForElapsed - Variable in class org.kepler.profiling.gui.ExecutionMonitorPanel.ActorInfo
If true, the current time can be used to calculate the elapsed execution time of an actor.
useDisk - Variable in class org.ecoinformatics.seek.gis.java_gis.AscGridValue
Boolean setting to determine whether or not to use disk for storing grid data rather than putting all data in RAM arrays
useDisk - Variable in class org.ecoinformatics.seek.gis.java_gis.CVHull2Raster
Boolean setting to determine whether or not to use disk for storing grid data rather than putting all data in RAM arrays.
useDisk - Variable in class org.ecoinformatics.seek.gis.java_gis.GridRescaler
Boolean setting to determine whether or not to use disk for storing grid data rather than putting all data in RAM arrays
useDisk - Variable in class org.ecoinformatics.seek.gis.java_gis.GridReset
Boolean setting to determine whether or not to use disk for storing grid data rather than putting all data in RAM arrays
useDisk - Variable in class org.ecoinformatics.seek.gis.java_gis.MergeGrids
Boolean setting to determine whether or not to use disk for storing grid data rather than putting all data in RAM arrays
useExistingFile - Variable in class org.ecoinformatics.seek.gis.java_gis.GridRescaler
Boolean setting to determine whether or not to use currently existing output file, if it exists
useExpression - Variable in class ptolemy.vergil.kernel.attributes.AttributeValueAttribute
If true, display the expression rather than the value.
useFileDialog() - Static method in class ptolemy.gui.PtGUIUtilities
Return true if java.awt.FileDialog should be used instead of javax.swing.JFileChooser.
useForDisplay - Variable in class org.sdm.spa.BrowserUI
A boolean parameter indicating whether this actor is used only for display only or will it be used for user interactions.
usegivendir - Variable in class org.kepler.actor.job.GenericJobLauncher
By default, Kepler creates a unique sub directory within workdir based on the the job id it creates for the job.
useLocalTime - Variable in class ptolemy.actor.lib.CurrentTime
If true, use the model time reported by the input port, which is normally the model time of the local director.
useLocalTime - Variable in class ptolemy.actor.lib.gui.TimedPlotter
If true, use the model time reported by the input port, which is normally the model time of the local director.
useLsOnly - Variable in class org.kepler.actor.io.SshDirectoryList_v1_1
Specifying whether the underlying command should be only an 'ls' instead of the default 'ls -l'.
useOldAlgorithm - Variable in class ptolemy.vergil.basic.layout.AbstractLayoutConfiguration
Whether to use Ptolemy's original layout algorithm.
usePastInputs - Variable in class ptolemy.domains.sdf.lib.Chop
If offset is greater than 0, specify whether to use previously read inputs (otherwise use zeros).
usePreparedStatement - Variable in class org.sdm.spa.DatabaseWriter
If true, use a prepared statement instead of statement to perform the SQL command.
usePtWebsite - Variable in class ptolemy.vergil.basic.export.web.WebExportParameters
If true, use the server-side includes of the Ptolemy website.
usePtWebsite - Variable in class ptolemy.vergil.basic.ExportParameters
If true, use the server-side includes of the Ptolemy website.
user - Variable in class org.geon.Scp
Username on the SSH host to be connected to.
USER - Static variable in class org.kepler.workflowrunmanager.WRMDefaults
 
user - Variable in class org.sdm.spa.Ssh2Exec
Username on the SSH host to be connected to.
USER_CANCEL - Static variable in exception org.kepler.authentication.AuthenticationException
set this type if the exception is thrown because the user canceled the action
USER_LIBRARY_NAME - Static variable in class ptolemy.actor.gui.UserActorLibrary
The name of the user library.
USER_NAME_COLUMN_WIDTH - Static variable in class org.kepler.workflowrunmanager.WRMDefaults
 
UserActorLibrary - Class in ptolemy.actor.gui
Access the User Actor Library.
UserActorLibrary() - Constructor for class ptolemy.actor.gui.UserActorLibrary
 
userDialog - Variable in class ptolemy.actor.lib.gui.InteractiveDialog
The dialog window object.
UserDialog - Class in ptolemy.gui
A panel with two text areas, one for user input, and one in which to display responses.
UserDialog() - Constructor for class ptolemy.gui.UserDialog
Create a new instance with no initial message.
UserDialog(String) - Constructor for class ptolemy.gui.UserDialog
Create a new instance with the specified initial message.
USERHOME - Static variable in class org.camera.service.ServiceUtils
 
USERHOME - Static variable in class org.kepler.actor.rest.ServiceUtils
 
UserInteractiveShell - Class in org.sdm.spa.gui
This actor code is adopted from InteractiveShell.java by Edward A.
UserInteractiveShell(CompositeEntity, String) - Constructor for class org.sdm.spa.gui.UserInteractiveShell
Construct an actor with the given container and name.
UserInteractiveShell.ShellFrame - Class in org.sdm.spa.gui
The frame that is created by an instance of ShellTableau.
UserInteractiveShell.ShellTableau - Class in org.sdm.spa.gui
Version of ExpressionShellTableau that records the size of the display when it is closed.
username - Variable in class org.geon.FTPClient
Authentication username
username - Variable in class org.geon.OpenDBConnection
 
userName - Variable in class org.kepler.authentication.AuthenticationService
 
username - Variable in class org.kepler.provenance.ProvenanceRecorder
Username.
userName - Variable in class org.sdm.spa.MessageBasedWebService
Deprecated.
The userName to invoke the web service if necessary.
userName - Variable in class org.sdm.spa.WebService
The userName to invoke the web service if necessary.
userName - Variable in class org.sdm.spa.WebServiceStub
Deprecated.
 
username - Variable in class org.sdm.spa.WSWithComplexTypes
The user name for authentication.
userName - Variable in class org.srb.SProxy
User name.
USERNAME_BREAK - Static variable in class org.kepler.authentication.gui.GAMALoginGUI
 
usernameParam - Variable in class org.ecoinformatics.seek.ecogrid.EcogridWriter
User name for authenticatication.
UserPrefs - Class in org.mlc.swing.layout
This is a singleton container for handling user preferences.
userSaysRevert(String) - Method in class ptolemy.actor.gui.PortConfigurerDialog.ValidatingComboBoxCellEditor
Return true if the user wants to revert to the original value.
userSaysRevert(String) - Method in class ptolemy.actor.gui.PortConfigurerDialog.ValidatingJTextFieldCellEditor
Return true if the user wants to revert to the original value.
useSavedBounds(String, Window) - Method in class org.mlc.swing.layout.UserPrefs
Fetch a window's size and position data and apply it.
UsesInvokeAndWait - Interface in ptolemy.actor.lib.gui
A marker interface indicating that the class calls SwingUtilities.invokeAndWait().
useTempFile - Variable in class org.kepler.gui.kar.ExportArchiveAction
prevent the file chooser from displaying and just use a temp file
useTimeInMillis - Variable in class ptolemy.actor.lib.DateConstructor
Use the time in milliseconds.
useUUID - Variable in class org.kepler.actor.RandomDirectoryMaker
If true, use UUIDs for the random directory name.
usingSupportedRecordingType() - Method in class org.kepler.workflowrunmanager.WorkflowRunManager
 
uTerm() - Method in class ptolemy.moml.unit.UParser
 
Util - Class in org.kepler.sms
Created by IntelliJ IDEA.
Util() - Constructor for class org.kepler.sms.Util
 
Util - Class in org.sdm.spa
 
Util() - Constructor for class org.sdm.spa.Util
 
Utilities - Class in com.jgoodies.forms.util
Consists only of static utility methods.
Utilities - Class in org.kepler.ddp
A collection of utilities for DDP classes.
Utilities() - Constructor for class org.kepler.ddp.Utilities
 
Utilities - Class in ptolemy.graph.test
Utilities for testing graphs.
Utilities.TokenType - Enum in org.kepler.ddp
Enumeration of types of token that can be serialized to/from strings.
UtilityFunctions - Class in ptolemy.data.expr
This class provides additional functions for use in the Ptolemy II expression language.
UtilityFunctions() - Constructor for class ptolemy.data.expr.UtilityFunctions
 
UUID_TEXT - Static variable in class org.kepler.util.sql.Column
A column for text UUIDs.

V

v - Variable in class org.kepler.workflowrunmanager.gui.ColumnGroup
Holds the TableColumn or ColumnGroup objects contained within this ColumnGroup instance.
valDistances - Variable in class org.ecoinformatics.seek.gis.grass.GISBufferActor
 
valid() - Method in class ptolemy.graph.analysis.Analysis
Return the validity of the associated analyzer.
valid() - Method in interface ptolemy.graph.analysis.analyzer.Analyzer
Return the validity state of the analyzer.
valid() - Method in class ptolemy.graph.analysis.strategy.AllEdgeSingleSourceLongestPathStrategy
Check for compatibility between the analysis and the given graph.
valid() - Method in class ptolemy.graph.analysis.strategy.ClusterNodesTransformerStrategy
Always valid.
valid() - Method in class ptolemy.graph.analysis.strategy.FloydWarshallAllPairShortestPathStrategy
Check for compatibility between the analysis and the given graph.
valid() - Method in class ptolemy.graph.analysis.strategy.FloydWarshallCycleExistenceStrategy
Check for compatibility between the analysis and the given graph.
valid() - Method in class ptolemy.graph.analysis.strategy.FloydWarshallNegativeLengthCycleStrategy
Check for compatibility between the analysis and the given graph.
valid() - Method in class ptolemy.graph.analysis.strategy.FloydWarshallTransitiveClosureStrategy
Check for validity of this strategy.
valid() - Method in class ptolemy.graph.analysis.strategy.FloydWarshallZeroLengthCycleStrategy
Check for compatibility between the analysis and the given graph.
valid() - Method in class ptolemy.graph.analysis.strategy.KarpCycleMeanStrategy
Check for compatibility between the analysis and the given graph.
valid() - Method in class ptolemy.graph.analysis.strategy.MirrorTransformerStrategy
Always valid.
valid() - Method in class ptolemy.graph.analysis.strategy.ParhiMaximumProfitToCostRatioStrategy
Check for compatibility between the analysis and the given graph.
valid() - Method in class ptolemy.graph.analysis.strategy.SelfLoopStrategy
Check for validity of this strategy.
valid() - Method in class ptolemy.graph.analysis.strategy.SinkNodeStrategy
Check compatibility of the class of graph.
valid() - Method in class ptolemy.graph.analysis.strategy.SourceNodeStrategy
Check compatibility of the class of graph.
validAnalyzerInterface(Analyzer) - Method in class ptolemy.graph.analysis.AllPairShortestPathAnalysis
Check if a given analyzer is compatible with this analysis.
validAnalyzerInterface(Analyzer) - Method in class ptolemy.graph.analysis.Analysis
Check if a given analyzer is compatible with this analysis.
validAnalyzerInterface(Analyzer) - Method in class ptolemy.graph.analysis.ClusterNodesAnalysis
Check if a given analyzer is compatible with this analysis.
validAnalyzerInterface(Analyzer) - Method in class ptolemy.graph.analysis.CycleExistenceAnalysis
Check if a given analyzer is compatible with this analysis.
validAnalyzerInterface(Analyzer) - Method in class ptolemy.graph.analysis.CycleMeanAnalysis
Check if a given analyzer is compatible with this analysis.
validAnalyzerInterface(Analyzer) - Method in class ptolemy.graph.analysis.MaximumProfitToCostRatioAnalysis
Check if a given analyzer is compatible with this analysis.
validAnalyzerInterface(Analyzer) - Method in class ptolemy.graph.analysis.MirrorTransformation
Check if a given analyzer is compatible with this analysis.
validAnalyzerInterface(Analyzer) - Method in class ptolemy.graph.analysis.NegativeLengthCycleAnalysis
Check if a given analyzer is compatible with this analysis.
validAnalyzerInterface(Analyzer) - Method in class ptolemy.graph.analysis.SelfLoopAnalysis
Check if a given analyzer is compatible with this analysis.
validAnalyzerInterface(Analyzer) - Method in class ptolemy.graph.analysis.SingleSourceLongestPathAnalysis
Check if a given analyzer is compatible with this analysis.
validAnalyzerInterface(Analyzer) - Method in class ptolemy.graph.analysis.SinkNodeAnalysis
Check if a given analyzer is compatible with this analysis.
validAnalyzerInterface(Analyzer) - Method in class ptolemy.graph.analysis.SourceNodeAnalysis
Check if a given analyzer is compatible with this analysis.
validAnalyzerInterface(Analyzer) - Method in class ptolemy.graph.analysis.TransitiveClosureAnalysis
Check if a given analyzer is compatible with this analysis.
validAnalyzerInterface(Analyzer) - Method in class ptolemy.graph.analysis.ZeroLengthCycleAnalysis
Check if a given analyzer is compatible with this analysis.
validAnalyzerInterface(Analyzer) - Method in class ptolemy.graph.sched.ScheduleAnalysis
Check if a given analyzer is compatible with this analysis.
validate() - Method in class org.kepler.moml.DependencyAttribute
validate the expression.
validate() - Method in class org.kepler.moml.NamedObjId
validate the expression.
validate() - Method in class org.kepler.moml.PortAttribute
validate the expression.
validate() - Method in class org.kepler.sms.KeplerIOPortReference
Validate the expression.
validate() - Method in class org.kepler.sms.KeplerVirtualIOPortReference
Validate the expression.
validate() - Method in class org.kepler.sms.SemanticProperty
validate the expression.
validate() - Method in class org.kepler.sms.SemanticTypeDefinition
validate the expression.
validate() - Method in class org.kepler.workflowrunmanager.gui.DurationCellRenderer
 
validate() - Method in class org.kepler.workflowrunmanager.gui.WRMDefaultTableCellRenderer
 
validate() - Method in class ptolemy.actor.LocalClock
This method has to be implemented for the AbstractSettableAttribute interface.
validate() - Method in class ptolemy.actor.parameters.SharedParameter
Override the base class to also validate the shared instances.
validate() - Method in class ptolemy.actor.parameters.test.TestSharedParameter
Override the base class to also validate the shared instances.
validate() - Method in class ptolemy.data.expr.ConstraintMonitor
Override the base class to establish a connection with any decorated objects it finds in scope in the container.
validate() - Method in class ptolemy.data.expr.NameParameter
If this variable is not lazy (the default) then evaluate the expression contained in this variable, and notify any value dependents.
validate() - Method in class ptolemy.data.expr.ScopeExtendingAttribute
Validate contained settables.
validate() - Method in class ptolemy.data.expr.Variable
If this variable is not lazy (the default) then evaluate the expression contained in this variable, and notify any value dependents.
validate() - Method in class ptolemy.domains.modal.kernel.FSMTransitionParameter
Validate.
validate() - Method in class ptolemy.kernel.util.ConfigurableAttribute
Validate this attribute by calling ConfigurableAttribute.value().
validate() - Method in class ptolemy.kernel.util.Location
Parse the location specification given by setExpression(), if there has been one, and otherwise set the location to 0.0, 0.0.
validate() - Method in interface ptolemy.kernel.util.ScopeExtender
Evaluate the expressions of all the parameters of the scope extender.
validate() - Method in interface ptolemy.kernel.util.Settable
Check the validity of the expression set in setExpression().
validate() - Method in class ptolemy.kernel.util.StringAttribute
Do nothing.
validate() - Method in class ptolemy.kernel.util.test.InvalidStringAttribute
Throw either a KernelRuntimeException or an IllegalActionException.
validate() - Method in class ptolemy.moml.unit.UnitAttribute
 
validate() - Method in class ptolemy.vergil.actor.LayoutHint
Parse the layout hint specification given by setExpression(), if there has been one, and otherwise do nothing, i.e. keep the list of layout hints empty.
validate() - Method in class ptolemy.vergil.actor.lib.MonitorReceiverAttribute
Check the validity of the expression set in setExpression().
validate() - Method in class ptolemy.vergil.basic.export.web.Title
Override the base class to set the text to be displayed in the icon.
validate() - Method in class ptolemy.vergil.kernel.attributes.AttributeValueAttribute
Set the attribute name to match the current expression.
validateCount - Variable in class ptolemy.actor.parameters.test.TestSharedParameter
 
validateDocument(Document) - Static method in class org.kepler.kar.karxml.KarXml
Validate the document against the schema.
validateInput() - Method in class org.kepler.gui.AbstractDialogTab
check the user input for errors/omissions.
validateInput() - Method in class org.kepler.gui.DialogAnnotationsTab
Validate the user-editable values associated with this tab
validateInput() - Method in class org.kepler.gui.DialogGeneralTab
check the user input for errors/omissions.
validateInput() - Method in class org.kepler.gui.DialogParametersTab
check the user input for errors/omissions.
validateInput() - Method in class org.kepler.gui.DialogPortsTab
Validate the user-editable values associated with this tab
validateInput() - Method in class org.kepler.gui.DialogUnitsTab
Validate the user-editable values associated with this tab
validateSettables() - Method in class ptolemy.kernel.util.NamedObj
Validate attributes deeply contained by this object if they implement the Settable interface by calling their validate() method.
validateWeight(Element, Object) - Method in class ptolemy.graph.ElementList
Validate the weight of a given graph element, given the previous weight of that element.
validateWeight(Edge) - Method in class ptolemy.graph.Graph
Validate the weight of an edge.
validateWeight(Edge, Object) - Method in class ptolemy.graph.Graph
Validate the weight of an edge given the edge and its previous weight.
validateWeight(Node) - Method in class ptolemy.graph.Graph
Validate the weight of a node.
validateWeight(Node, Object) - Method in class ptolemy.graph.Graph
Validate the weight of a node given the node and its previous weight.
ValidatingComboBoxCellEditor(JComboBox) - Constructor for class ptolemy.actor.gui.PortConfigurerDialog.ValidatingComboBoxCellEditor
Construct a validating combo box JTable Cell editor.
ValidatingJTextFieldCellEditor() - Constructor for class ptolemy.actor.gui.PortConfigurerDialog.ValidatingJTextFieldCellEditor
Construct a validating JTextField JTable Cell editor.
ValidatingJTextFieldCellEditor(JFormattedTextField) - Constructor for class ptolemy.actor.gui.PortConfigurerDialog.ValidatingJTextFieldCellEditor
Construct a validating JTextField JTable Cell editor.
ValidatingXMLParser - Class in ptolemy.configs.test
A validating XML parser.
ValidatingXMLParser() - Constructor for class ptolemy.configs.test.ValidatingXMLParser
 
ValidatingXMLParser.MoMLEntityResolver - Class in ptolemy.configs.test
Resolve an entity by checking for http://ptolemy.eecs.berkeley.edu/xml/dtd/MoML_1.dtd and, if found, return the value of MoMLParser.MoML_1.dtd.
ValidationThread - Class in org.geon
Thread for validating the number of Lidar points with a user selected query attributes.
ValidationThread(StringBuffer, String, String, String, String, String, String[]) - Constructor for class org.geon.ValidationThread
 
validEdgeWeight(Object) - Method in class ptolemy.graph.Graph
Return true if the given object is a valid edge weight for this graph.
validNodeWeight(Object) - Method in class ptolemy.graph.Graph
Return true if the given object is a valid node weight for this graph.
validPort(IOPort) - Method in class org.kepler.sms.gui.PortSemanticTypeEditorPane
 
validPort(KeplerCompositeIOPort) - Method in class org.kepler.sms.gui.PortSemanticTypeEditorPane
 
vAlign - Variable in class com.jgoodies.forms.layout.CellConstraints
Describes the component's vertical alignment.
value(boolean) - Method in class org.json.JSONWriter
Append either the value true or the value false.
value(double) - Method in class org.json.JSONWriter
Append a double value.
value(long) - Method in class org.json.JSONWriter
Append a long value.
value(Object) - Method in class org.json.JSONWriter
Append an object value.
value - Variable in class org.kepler.actor.RecordOperation
The value to add or replace in the input.
value - Variable in class org.kepler.ddp.actor.pattern.stub.MapInput
Output port to write the value to the workflow.
value - Variable in class org.resurgence.actor.PermanentStringConstant
The value produced by this constant source.
value - Variable in class org.sdm.spa.util.ActorInspector.AttributeInfo
 
value - Variable in class ptolemy.actor.lib.ArrayUpdate
The value to insert into the array at the position given by index.
value - Variable in class ptolemy.actor.lib.Const
The value produced by this constant source.
value - Variable in class ptolemy.actor.lib.Dictionary
Input port for providing a value to store in the dictionary.
value - Variable in class ptolemy.actor.lib.gui.EventButton
The value produced.
value - Variable in class ptolemy.actor.lib.gui.MonitorValue
The most recently seen input value.
value - Variable in class ptolemy.actor.lib.ModifyDate
Input for value in a given unit to be added or subtracted from date token received by input.
value - Variable in class ptolemy.actor.lib.ResettableTimer
The value produced at the output.
value - Variable in class ptolemy.actor.lib.SingleEvent
The value produced at the output.
value() - Method in class ptolemy.actor.util.RealDependency
Return the double value of the dependency.
value - Variable in class ptolemy.data.expr.ConstraintMonitor.ConstraintMonitorAttributes
 
value - Variable in class ptolemy.data.expr.SimpleNode
 
value() - Method in class ptolemy.data.UnionToken
Return the value of this token.
value - Variable in class ptolemy.domains.continuous.lib.LevelCrossingDetector
The output value to produce when a level-crossing is detected.
value - Variable in class ptolemy.domains.de.lib.Timer
Deprecated.
The value produced at the output.
value - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestZeroRate1
The value produced by this constant source.
value - Variable in class ptolemy.domains.sdf.kernel.test.SDFTestZeroRate2
The value produced by this constant source.
value - Variable in class ptolemy.domains.sdf.optimize.lib.DummyFrame
Represents the value encapsulated by the shared data frame.
value() - Method in class ptolemy.kernel.util.ConfigurableAttribute
Return the value given by the configure tag.
value1 - Variable in class org.kepler.ddp.actor.pattern.stub.MatchInput
Port to write the value from the first input.
value2 - Variable in class org.kepler.ddp.actor.pattern.stub.CrossInput
Port to write the value from the second input.
value2 - Variable in class org.kepler.ddp.actor.pattern.stub.MatchInput
Port to write the value from the second input.
VALUE_FIELD - Static variable in class org.kepler.stratosphere.type.TypeUtilities
The index of the value field.
valueChanged(ListSelectionEvent) - Method in class org.ecoinformatics.seek.querybuilder.DBWherePanel
Upates the "inspector" ui when an item in the list is clicked on
valueChanged(ListSelectionEvent) - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneAdvanced
 
valueChanged(ListSelectionEvent) - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneIntermediate
 
valueChanged(ListSelectionEvent) - Method in class org.ecoinformatics.seek.querybuilder.QBSplitPaneStandard
 
valueChanged(Settable) - Method in class org.kepler.gui.KeplerXMLIcon
React to the fact that the value of an attribute named "_iconDescription" contained by the same container has changed value by redrawing the figure.
valueChanged(Settable) - Method in class org.kepler.provenance.ProvenanceRecorder
React to a change in parameter value.
valueChanged(SemanticTypeBrowserSelectionEvent) - Method in interface org.kepler.sms.gui.SemanticTypeBrowserSelectionListener
Called whenever a selection is made in the semantic type browser
valueChanged(OntologyDisplaySelectionEvent) - Method in interface org.kepler.tagging.gui.OntologyDisplaySelectionListener
 
valueChanged(ListSelectionEvent) - Method in class org.kepler.tagging.gui.OntologyDisplayUI
 
valueChanged(OntologyDisplaySelectionEvent) - Method in class org.kepler.tagging.gui.OntologyEditorUI
React to changes in ontology selection
valueChanged(TreeSelectionEvent) - Method in class org.kepler.tagging.gui.OntologyEditorUI
 
valueChanged(TreeSelectionEvent) - Method in class org.kepler.workflowscheduler.gui.ComponentSearchResultTreeSelectionListener
This method only handle a leaf node selection
valueChanged(Settable) - Method in class ptolemy.actor.gui.PtolemyQuery
Notify this query that the value of the specified attribute has changed.
valueChanged(Settable) - Method in class ptolemy.data.expr.ConstraintMonitor
Override the base class to mark that evaluation is needed regardless of the current expression.
valueChanged(Settable) - Method in class ptolemy.data.expr.Variable
React to the change in the specified instance of Settable.
valueChanged(Settable) - Method in class ptolemy.domains.sdf.kernel.SDFScheduler
React to the fact that the specified Settable has changed by invalidating the schedule.
valueChanged(Settable) - Method in class ptolemy.kernel.util.test.StreamValueListener
React to the fact that the specified Settable has changed.
valueChanged(Settable) - Method in interface ptolemy.kernel.util.ValueListener
React to the fact that the specified Settable has changed.
valueChanged(Settable) - Method in class ptolemy.vergil.basic.BasicGraphController
React to the fact that the specified Settable has changed.
valueChanged(ListSelectionEvent) - Method in class ptolemy.vergil.basic.SearchResultsDialog
React to notice that the selection has changed.
valueChanged(Settable) - Method in class ptolemy.vergil.icon.SVGIcon
React to the fact that the value of an attribute named "_iconDescription" contained by the same container has changed value by redrawing the figure.
valueChanged(Settable) - Method in class ptolemy.vergil.icon.UpdatedValueIcon
React to the specified Settable changing by requesting a repaint of the most recently constructed figures.
valueChanged(Settable) - Method in class ptolemy.vergil.icon.XMLIcon
React to the fact that the value of an attribute named "_iconDescription" contained by the same container has changed value by redrawing the figure.
valueChanged(Settable) - Method in class ptolemy.vergil.kernel.attributes.AttributeValueAttribute
React to a change in the value of the associated attribute.
valueChanged(ListSelectionEvent) - Method in class ptolemy.vergil.unit.UnitSolverDialog
 
valueForPathChanged(TreePath, Object) - Method in class org.kepler.gui.FilteredVisibleTreeModel
 
valueForPathChanged(TreePath, Object) - Method in class org.sdm.spa.gui.XMLUIP.DomToTreeModelAdapter
 
valueForPathChanged(TreePath, Object) - Method in class ptolemy.vergil.tree.EntityTreeModel
Notify listeners that the object at the given path has changed.
valueForPathChanged(TreePath, Object) - Method in class ptolemy.vergil.tree.VisibleTreeModel
Override the base class to do nothing.
ValueIcon - Class in ptolemy.vergil.icon
An icon that displays a bullet, the name, and, if the container is an instance of settable, its value.
ValueIcon(NamedObj, String) - Constructor for class ptolemy.vergil.icon.ValueIcon
Create a new icon with the given name in the given container.
ValueListener - Interface in ptolemy.kernel.util
This is an interface for listeners that are notified when the value of an object implementing Settable changes.
valueName - Static variable in class org.kepler.dataproxy.datasource.opendap.TokenMapper
 
valueName - Static variable in class org.kepler.dataproxy.datasource.opendap.TypeMapper
 
valueOf(String) - Static method in enum org.kepler.cloudsharing.util.WorkflowResults.Privacy
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.ddp.actor.ExecutionChoice.IOType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.ddp.actor.ExecutionChoice.ParameterType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.ddp.Utilities.TokenType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.gis.actor.pylaski.PylaskiUtilities.Selection
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.gui.kar.ImportModuleDependenciesAction.ImportChoice
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.job.JobStatusCode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.monitor.figure.BaseFigure.Orientation
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.plotting.GraphProperty
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.plotting.PointType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.plotting.UpdateType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.provenance.FireState.PortAccessType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.provenance.sql.SQLRecording.PortDirection
Returns the enum constant of this type with the specified name.
valueOf(int) - Static method in enum org.kepler.provenance.sql.SQLRecording.PortDirection
 
valueOf(String) - Static method in enum org.kepler.reporting.rio.DynamicReportItem.AlignmentValues
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.reporting.rio.DynamicReportItem.DynamicItemProperties
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.reporting.rio.DynamicReportItem.ScaleValues
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.reporting.rio.RIORenderer.PDFViewer
Deprecated.
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.reporting.rio.StaticReportItemHR.ALIGNMENT_VALUES
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.reporting.rio.StaticReportItemHR.StaticReportItemHRProperties
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.reporting.rio.StaticReportItemHR.WIDTH_VALUES
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.reporting.rio.StaticReportItemImage.SCALE_VALUES
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.reporting.rio.StaticReportItemImage.StaticReportItemImageProperties
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.reporting.rio.StaticReportItemSection.AlignmentValues
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.reporting.rio.StaticReportItemSection.BreakValues
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.reporting.rio.StaticReportItemSection.FontSizeValues
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.reporting.rio.StaticReportItemSection.StaticReportItemSectionProperties
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.reporting.rio.StaticReportItemText.StaticReportItemTextProperties
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.reporting.rio.StaticReportItemText.TextAlignment
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.reporting.rio.StaticReportItemText.TextSize
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.reporting.rio.StaticReportItemText.TextWeight
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.tagging.TaggingContext
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.tagging.TagReloadType.Type
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.util.RemoteStoreRunsTracker.TrackerRunAttribute
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.util.sql.Column.Type
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.util.sql.DatabaseFactory.Parameter
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.util.sql.Table.IndexType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.util.WorkflowRun.RunAttribute
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.util.WorkflowRun.type
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.kepler.webview.server.WebViewableUtilities.Event
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ptolemy.actor.CommunicationAspectListener.EventType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ptolemy.actor.ExecutionAspectListener.ExecutionEventType
Returns the enum constant of this type with the specified name.
valueOf(boolean) - Static method in class ptolemy.actor.util.BooleanDependency
Return an instance of BooleanDependency with the specified value.
valueOf(double) - Static method in class ptolemy.actor.util.RealDependency
Return an instance of RealDependency with the specified value.
valueOf(double, int) - Static method in class ptolemy.actor.util.SuperdenseDependency
Return an instance of SuperdenseDependency with the specified time and index value.
valueOf(String) - Static method in enum ptolemy.domains.sdf.optimize.OptimizingSDFDirector.OptimizationCriteria
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ptolemy.graph.CPO.BoundType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ptolemy.graph.NonLatticeCounterExample.GraphExampleType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ptolemy.vergil.basic.layout.AbstractLayoutConfiguration.InteractionMode
Returns the enum constant of this type with the specified name.
ValueOnlyOutputFormat<K,V> - Class in org.kepler.hadoop.io.output
This class provides OutputFormat to write key values.
ValueOnlyOutputFormat() - Constructor for class org.kepler.hadoop.io.output.ValueOnlyOutputFormat
 
ValueOnlyOutputFormat - Class in org.kepler.stratosphere.io.output
Output Format which only sends value to outputs.
ValueOnlyOutputFormat() - Constructor for class org.kepler.stratosphere.io.output.ValueOnlyOutputFormat
 
ValueOnlyOutputWriter<K,V> - Class in org.kepler.hadoop.io.output
This class provides RecordWriter to write key values.
ValueOnlyOutputWriter(DataOutputStream, String) - Constructor for class org.kepler.hadoop.io.output.ValueOnlyOutputWriter
 
ValueOnlyOutputWriter(DataOutputStream) - Constructor for class org.kepler.hadoop.io.output.ValueOnlyOutputWriter
 
VALUES - Static variable in class org.ecoinformatics.seek.dataquery.DBTablesGenerator
 
values() - Static method in enum org.kepler.cloudsharing.util.WorkflowResults.Privacy
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.ddp.actor.ExecutionChoice.IOType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.ddp.actor.ExecutionChoice.ParameterType
Returns an array containing the constants of this enum type, in the order they are declared.
values - Variable in class org.kepler.ddp.actor.pattern.stub.ReduceInput
Port to write the values to the workflow.
values() - Static method in enum org.kepler.ddp.Utilities.TokenType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.gis.actor.pylaski.PylaskiUtilities.Selection
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.gui.kar.ImportModuleDependenciesAction.ImportChoice
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.job.JobStatusCode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.monitor.figure.BaseFigure.Orientation
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.plotting.GraphProperty
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.plotting.PointType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.plotting.UpdateType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.provenance.FireState.PortAccessType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.provenance.sql.SQLRecording.PortDirection
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.reporting.rio.DynamicReportItem.AlignmentValues
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.reporting.rio.DynamicReportItem.DynamicItemProperties
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.reporting.rio.DynamicReportItem.ScaleValues
Returns an array containing the constants of this enum type, in the order they are declared.
values - Variable in class org.kepler.reporting.rio.Item
 
values() - Static method in enum org.kepler.reporting.rio.RIORenderer.PDFViewer
Deprecated.
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.reporting.rio.StaticReportItemHR.ALIGNMENT_VALUES
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.reporting.rio.StaticReportItemHR.StaticReportItemHRProperties
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.reporting.rio.StaticReportItemHR.WIDTH_VALUES
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.reporting.rio.StaticReportItemImage.SCALE_VALUES
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.reporting.rio.StaticReportItemImage.StaticReportItemImageProperties
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.reporting.rio.StaticReportItemSection.AlignmentValues
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.reporting.rio.StaticReportItemSection.BreakValues
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.reporting.rio.StaticReportItemSection.FontSizeValues
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.reporting.rio.StaticReportItemSection.StaticReportItemSectionProperties
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.reporting.rio.StaticReportItemText.StaticReportItemTextProperties
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.reporting.rio.StaticReportItemText.TextAlignment
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.reporting.rio.StaticReportItemText.TextSize
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.reporting.rio.StaticReportItemText.TextWeight
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.tagging.TaggingContext
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.tagging.TagReloadType.Type
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.util.RemoteStoreRunsTracker.TrackerRunAttribute
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.util.sql.Column.Type
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.util.sql.DatabaseFactory.Parameter
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.util.sql.Table.IndexType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.util.WorkflowRun.RunAttribute
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.util.WorkflowRun.type
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.kepler.webview.server.WebViewableUtilities.Event
Returns an array containing the constants of this enum type, in the order they are declared.
values - Variable in class org.surge.RecordToStrings
 
values - Variable in class org.surge.StringsToRecord
 
values() - Static method in enum ptolemy.actor.CommunicationAspectListener.EventType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ptolemy.actor.ExecutionAspectListener.ExecutionEventType
Returns an array containing the constants of this enum type, in the order they are declared.
values - Variable in class ptolemy.actor.lib.Clock
Deprecated.
The values that will be produced at the specified offsets.
values - Variable in class ptolemy.actor.lib.Dictionary
Upon receiving any token at the triggerValues port, this actor will produce on this output an array containing all the values of entries in the dictionary.
values - Variable in class ptolemy.actor.lib.DiscreteClock
The values that will be produced at the specified offsets.
values - Variable in class ptolemy.actor.lib.DiscreteRandomSource
The values to be sent to the output.
values - Variable in class ptolemy.actor.lib.Interpolator
The values that will be produced at the specified indexes.
values - Variable in class ptolemy.actor.lib.PoissonClock
The values that will be produced at the output.
values - Variable in class ptolemy.actor.lib.Pulse
The values that will be produced at the specified indexes.
values - Variable in class ptolemy.actor.lib.Sequence
The values that will be produced on the output.
values - Variable in class ptolemy.actor.lib.SequentialClock
Deprecated.
The values that will be produced at the specified offsets.
values - Variable in class ptolemy.domains.continuous.lib.EventSource
Deprecated.
The values that will be produced at the specified offsets.
values() - Static method in enum ptolemy.domains.sdf.optimize.OptimizingSDFDirector.OptimizationCriteria
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ptolemy.graph.CPO.BoundType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ptolemy.graph.NonLatticeCounterExample.GraphExampleType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Method in class ptolemy.util.MultiHashMap
Return a view of the collection containing all values in the map.
values() - Static method in enum ptolemy.vergil.basic.layout.AbstractLayoutConfiguration.InteractionMode
Returns an array containing the constants of this enum type, in the order they are declared.
values1 - Variable in class org.kepler.ddp.actor.pattern.stub.CoGroupInput
Port to write the values from the first input.
values2 - Variable in class org.kepler.ddp.actor.pattern.stub.CoGroupInput
Port to write the values from the second input.
variable - Variable in class org.kepler.data.netcdf.NetCDFWriter
The name of the variable to write.
Variable - Class in ptolemy.data.expr
A Variable is an Attribute that contains a token, and can be set by an expression that can refer to other variables.
Variable() - Constructor for class ptolemy.data.expr.Variable
Construct a variable in the default workspace with an empty string as its name.
Variable(NamedObj, String) - Constructor for class ptolemy.data.expr.Variable
Construct a variable with the given name as an attribute of the given container.
Variable(NamedObj, String, Token) - Constructor for class ptolemy.data.expr.Variable
Construct a variable with the given container, name, and token.
Variable(Workspace) - Constructor for class ptolemy.data.expr.Variable
Construct a variable in the specified workspace with an empty string as its name.
Variable(NamedObj, String, Token, boolean) - Constructor for class ptolemy.data.expr.Variable
Construct a variable with the given container, name, and token.
Variable.CircularDependencyError - Exception in ptolemy.data.expr
Subclass of IllegalActionException for use in reporting circular dependency errors.
Variable.VariableScope - Class in ptolemy.data.expr
Scope implementation with local caching.
VariableClock - Class in ptolemy.actor.lib
Deprecated.
Use Clock instead.
VariableClock(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.VariableClock
Deprecated.
Construct an actor with the specified container and name.
VariableDelay - Class in ptolemy.domains.de.lib
Deprecated.
Use ptolemy.actor.lib.TimeDelay.
VariableDelay(CompositeEntity, String) - Constructor for class ptolemy.domains.de.lib.VariableDelay
Deprecated.
Construct an actor with the specified container and name.
VariableFIR - Class in ptolemy.domains.sdf.lib
This actor implements a type polymorphic finite-impulse response filter with multirate capability, where the impulse response of the filter is provided by an input.
VariableFIR(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.VariableFIR
Construct an actor with the given container and name.
variableLabels() - Method in class ptolemy.moml.unit.Bindings
Create an array of Strings that contains all of the variables.
VariableLattice - Class in ptolemy.domains.sdf.lib
This actor implements an FIR filter with a lattice structure where the reflection coefficients are supplied at an input port.
VariableLattice(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.VariableLattice
Construct an actor with the given container and name.
variableList() - Method in class ptolemy.data.expr.ExplicitScope
Return the list of variables in this scope.
variableName - Variable in class ptolemy.actor.lib.SetVariable
The name of the variable in the container to set.
variableName - Variable in class ptolemy.vergil.icon.TableIcon
The name of the variable in the container whose value should be displayed in the icon.
VariableRecursiveLattice - Class in ptolemy.domains.sdf.lib
This actor implements a recursive (all-pole) filter with a lattice structure where the reflection coefficients are supplied at an input port.
VariableRecursiveLattice(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.VariableRecursiveLattice
Construct an actor with the given container and name.
variables() - Method in class ptolemy.graph.InequalitySolver
Return an Iterator of all the variables in the inequality constraints.
VariableScope() - Constructor for class ptolemy.data.expr.Variable.VariableScope
Construct a scope consisting of the variables of the container of the the enclosing instance of Variable and its containers and their scope-extending attributes.
VariableScope(NamedObj) - Constructor for class ptolemy.data.expr.Variable.VariableScope
Construct a scope consisting of the variables of the specified container its containers and their scope-extending attributes.
VariableSleep - Class in ptolemy.actor.lib
An actor that calls Thread.sleep() on the current thread the first time fire() is called.
VariableSleep(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.VariableSleep
Construct an actor with the given container and name.
variance(double[]) - Static method in class ptolemy.math.DoubleArrayStat
Return the variance of the elements in the array, assuming sufficient statistics.
variance(double[], boolean) - Static method in class ptolemy.math.DoubleArrayStat
Return the variance of the elements in the array, assuming sufficient statistics.
vecColName - Variable in class org.kepler.spark.mllib.VectorAssemble
Name of the output column containing standardized vectors
vector - Variable in class org.kepler.gis.actor.io.VectorReader
The set of vectors/features.
VECTOR - Static variable in class org.kepler.gis.data.VectorToken
 
VectorAssemble - Class in org.kepler.spark.mllib
 
VectorAssemble(CompositeEntity, String) - Constructor for class org.kepler.spark.mllib.VectorAssemble
 
VectorAssembler - Class in ptolemy.actor.lib
On each firing, read exactly one token from each channel of the input port and assemble the tokens into a DoubleMatrixToken with one column.
VectorAssembler(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.VectorAssembler
Construct an actor with the given container and name.
VectorCombineFiles - Class in org.kepler.gis.actor
An actor that combines a set of vector/features files into a single data set.
VectorCombineFiles(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.VectorCombineFiles
 
VectorDisassembler - Class in ptolemy.actor.lib
An actor that disassembles a DoubleMatrixToken to a multiport output.
VectorDisassembler(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.VectorDisassembler
Construct an actor with the given container and name.
VectorFilter - Class in org.kepler.gis.actor
An actor to filter features using ECQL.
VectorFilter(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.VectorFilter
 
vectorizationFactor - Variable in class ptolemy.domains.sdf.kernel.SDFDirector
A Parameter representing the requested vectorization factor.
VectorProperty - Class in org.kepler.gis.actor
An actor that extracts properties from a vector/feature data set.
VectorProperty(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.VectorProperty
 
VectorReader - Class in org.kepler.gis.actor.io
Actor that reads vectors/features from a file, WFS service, or GeoJSON string.
VectorReader(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.io.VectorReader
 
VectorSort - Class in org.kepler.gis.actor
Sort a vector/feature set on a specific property.
VectorSort(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.VectorSort
Create a new VectorSort in the container with the specified name.
VectorToGeoJSONString - Class in org.kepler.gis.actor.conversions
Actor that converts a vector token to a string token with a GeoJSON string.
VectorToGeoJSONString(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.conversions.VectorToGeoJSONString
 
VectorToken - Class in org.kepler.gis.data
Token containing GIS vectors.
VectorToken(SimpleFeatureCollection) - Constructor for class org.kepler.gis.data.VectorToken
Create a new VectorToken from a set of features.
VectorToken(SimpleFeatureSource, CoordinateReferenceSystem) - Constructor for class org.kepler.gis.data.VectorToken
Create a new VectorToken from a feature source.
VectorToken(String) - Constructor for class org.kepler.gis.data.VectorToken
 
VectorToken.VectorType - Class in org.kepler.gis.data
 
VectorToRaster - Class in org.kepler.gis.actor.conversions
An actor that converts a vector/feature data set into a raster.
VectorToRaster(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.conversions.VectorToRaster
 
VectorType() - Constructor for class org.kepler.gis.data.VectorToken.VectorType
 
VectorUtilities - Class in org.kepler.gis.util
A collection of utilities for vectors/features.
VectorUtilities() - Constructor for class org.kepler.gis.util.VectorUtilities
 
VectorWriter - Class in org.kepler.gis.actor.io
Write a vector/feature data set to a file.
VectorWriter(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.io.VectorWriter
 
VERBOSE - Static variable in class ptolemy.domains.sdf.kernel.BaseSDFScheduler
If true, then print verbose messages.
VERGIL_USER_LIBRARY_NAME - Static variable in class ptolemy.vergil.basic.BasicGraphFrame
VergilApplet - Class in ptolemy.vergil
An applet that bring up a toplevel, standalone Vergil frame.
VergilApplet() - Constructor for class ptolemy.vergil.VergilApplet
 
VergilApplication - Class in ptolemy.vergil
An application for editing ptolemy models visually.
VergilApplication(String[]) - Constructor for class ptolemy.vergil.VergilApplication
Parse the specified command-line arguments, creating models and frames to interact with them.
VergilApplication(String, String[]) - Constructor for class ptolemy.vergil.VergilApplication
Parse the specified command-line arguments, creating models and frames to interact with them.
VergilErrorHandler - Class in ptolemy.vergil
This error handler attempts to replace any failed MoML elements with generic versions so that the parsing of the MoML can continue.
VergilErrorHandler() - Constructor for class ptolemy.vergil.VergilErrorHandler
 
VergilGraphicalMessageHandler - Class in ptolemy.vergil
A message handler that optionally includes a button that opens the model that contains the actor that caused the exception and zooms into the actor.
VergilGraphicalMessageHandler() - Constructor for class ptolemy.vergil.VergilGraphicalMessageHandler
 
VergilInitializer - Class in ptolemy.vergil
Initialize Vergil.
VergilInitializer() - Constructor for class ptolemy.vergil.VergilInitializer
Perform any Vergil initialization.
VergilUtilities - Class in ptolemy.vergil.kernel
Utilities used by Vergil.
verifyPreorderValues() - Method in class org.kepler.objectmanager.library.LibIndex
Sum the LFT and RGT columns and verify they are continuous integers from 1 to (countItems()*2).
verifyUser(String) - Method in class org.geon.LidarJobDB
Verify whether a user has access to run lidar jobs.
version - Variable in class ptolemy.vergil.basic.DocAttribute
The version field.
VERSION_1_0 - Static variable in class org.kepler.kar.KARFile
 
VERSION_2_0 - Static variable in class org.kepler.kar.KARFile
Old versions still supported.
VERSION_2_1 - Static variable in class org.kepler.kar.KARFile
This is the current KAR version.
VERSION_TABLE_NAME - Static variable in class org.kepler.util.sql.DatabaseType
The name of the version table.
VersionAttribute - Class in ptolemy.kernel.attributes
A nonpersistent attribute that identifies the version of an object.
VersionAttribute(String) - Constructor for class ptolemy.kernel.attributes.VersionAttribute
Construct an object in the default workspace with the empty string as its name.
VersionAttribute(NamedObj, String) - Constructor for class ptolemy.kernel.attributes.VersionAttribute
Construct an attribute with the given name contained by the specified container.
VersionSpecification - Class in org.ptolemy.commons
Abstract base class for version specifications.
VersionSpecification() - Constructor for class org.ptolemy.commons.VersionSpecification
 
Vertex - Class in ptolemy.moml
This attribute represents a waypoint in a relation.
Vertex(Workspace) - Constructor for class ptolemy.moml.Vertex
Construct an attribute in the specified workspace with an empty string as a name.
Vertex(Relation, String) - Constructor for class ptolemy.moml.Vertex
Construct an attribute with the given name and position.
VertexModel() - Constructor for class ptolemy.vergil.actor.ActorGraphModel.VertexModel
 
VERTICAL - Static variable in class ptolemy.actor.gui.ModelPane
Indicator to use a vertical layout.
verticalAlign - Variable in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Parameter specifying the vertical position of the legend on the figure.
vertices - Variable in class ptolemy.vergil.kernel.attributes.ResizablePolygonAttribute
The amount of vertices of the corners.
vertx - Variable in class org.kepler.spark.mllib.GetLiveMeasurements
 
vertx() - Static method in class org.kepler.webview.server.WebViewServer
 
VHDL - Static variable in class ptolemy.math.Precision
static VHDLPrecisionFormat object.
VHDLPrecisionFormat() - Constructor for class ptolemy.math.Precision.VHDLPrecisionFormat
 
VIEWENTITY - Static variable in class org.ecoinformatics.seek.datasource.eml.eml2.Eml200Parser
 
VIEWENTITY - Static variable in class org.kepler.objectmanager.data.db.Entity
 
ViewerFactory(NamedObj, String) - Constructor for class org.kepler.gui.PlotsPanel.ViewerFactory
Create a factory with the given name and container.
ViewManager - Class in org.kepler.gui
The ViewManager keeps track of configured ViewPanes.
ViewManager() - Constructor for class org.kepler.gui.ViewManager
Constructor.
ViewManifestAction - Class in org.kepler.gui.kar
This action opens a kar file to the system.
ViewManifestAction(TableauFrame) - Constructor for class org.kepler.gui.kar.ViewManifestAction
Constructor
ViewPane - Interface in org.kepler.gui
This interface is to be implemented by anyone wanting to add a view to the Kepler.
ViewPaneFactory - Class in org.kepler.gui
 
ViewPaneFactory(NamedObj, String) - Constructor for class org.kepler.gui.ViewPaneFactory
 
ViewPaneLocation - Class in org.kepler.gui
 
ViewPaneLocation(String) - Constructor for class org.kepler.gui.ViewPaneLocation
Constructor.
ViewStateChangeEvent - Class in org.kepler.gui.state
An event that represents a state change in the application, showing both the state that changed and the source of the state change.
ViewStateChangeEvent(Component, String, NamedObj, String) - Constructor for class org.kepler.gui.state.ViewStateChangeEvent
Construct a new StateChange event.
ViewWatchingTabPane - Class in org.kepler.profiling.gui
A tab pane that knows when its containing view is selected.
ViewWatchingTabPane() - Constructor for class org.kepler.profiling.gui.ViewWatchingTabPane
 
ViewWatchingTabPane(LayoutManager) - Constructor for class org.kepler.profiling.gui.ViewWatchingTabPane
 
Visibility() - Constructor for class ptolemy.kernel.util.Settable.Visibility
 
VisibleAttribute - Class in ptolemy.vergil.kernel.attributes
Base class for attributes that are shown in vergil with their own icons.
VisibleAttribute(NamedObj, String) - Constructor for class ptolemy.vergil.kernel.attributes.VisibleAttribute
Construct an attribute with the given name contained by the specified container.
VisibleParameterEditorFactory - Class in ptolemy.vergil.toolbox
If this class is contained by a settable attribute, then double clicking on that attribute will invoke an editor for only that parameter.
VisibleParameterEditorFactory(NamedObj, String) - Constructor for class ptolemy.vergil.toolbox.VisibleParameterEditorFactory
Construct a factory with the specified container and name.
VisibleTreeModel - Class in ptolemy.vergil.tree
A tree model for the Vergil library panel.
VisibleTreeModel(CompositeEntity) - Constructor for class ptolemy.vergil.tree.VisibleTreeModel
Create a new tree model with the specified root.
visit(ThreadGroup, int) - Method in class org.ROADnet.OrbLogger
 
visit(ParseTreeVisitor) - Method in class ptolemy.data.expr.ASTPtArrayConstructNode
Traverse this node with the given visitor.
visit(ParseTreeVisitor) - Method in class ptolemy.data.expr.ASTPtAssignmentNode
Traverse this node with the given visitor.
visit(ParseTreeVisitor) - Method in class ptolemy.data.expr.ASTPtBitwiseNode
Traverse this node with the given visitor.
visit(ParseTreeVisitor) - Method in class ptolemy.data.expr.ASTPtFunctionalIfNode
Traverse this node with the given visitor.
visit(ParseTreeVisitor) - Method in class ptolemy.data.expr.ASTPtFunctionApplicationNode
Traverse this node with the given visitor.
visit(ParseTreeVisitor) - Method in class ptolemy.data.expr.ASTPtFunctionDefinitionNode
Traverse this node with the given visitor.
visit(ParseTreeVisitor) - Method in class ptolemy.data.expr.ASTPtLeafNode
Traverse this node with the given visitor.
visit(ParseTreeVisitor) - Method in class ptolemy.data.expr.ASTPtLogicalNode
Traverse this node with the given visitor.
visit(ParseTreeVisitor) - Method in class ptolemy.data.expr.ASTPtMatrixConstructNode
Traverse this node with the given visitor.
visit(ParseTreeVisitor) - Method in class ptolemy.data.expr.ASTPtMethodCallNode
Traverse this node with the given visitor.
visit(ParseTreeVisitor) - Method in class ptolemy.data.expr.ASTPtOrderedRecordConstructNode
Traverse this node with the given visitor.
visit(ParseTreeVisitor) - Method in class ptolemy.data.expr.ASTPtPowerNode
Traverse this node with the given visitor.
visit(ParseTreeVisitor) - Method in class ptolemy.data.expr.ASTPtProductNode
Traverse this node with the given visitor.
visit(ParseTreeVisitor) - Method in class ptolemy.data.expr.ASTPtRecordConstructNode
Traverse this node with the given visitor.
visit(ParseTreeVisitor) - Method in class ptolemy.data.expr.ASTPtRelationalNode
Traverse this node with the given visitor.
visit(ParseTreeVisitor) - Method in class ptolemy.data.expr.ASTPtRootNode
Traverse this node with the given visitor.
visit(ParseTreeVisitor) - Method in class ptolemy.data.expr.ASTPtShiftNode
Traverse this node with the given visitor.
visit(ParseTreeVisitor) - Method in class ptolemy.data.expr.ASTPtSumNode
Traverse this node with the given visitor.
visit(ParseTreeVisitor) - Method in class ptolemy.data.expr.ASTPtUnaryNode
Traverse this node with the given visitor.
visit(ParseTreeVisitor) - Method in class ptolemy.data.expr.ASTPtUnionConstructNode
Traverse this node with the given visitor.
visit(EquationVisitor) - Method in class ptolemy.moml.unit.UnitEquation
Visit this Unit equation (on the way to visiting the leaves)
visit(EquationVisitor) - Method in class ptolemy.moml.unit.UnitTerm
Visit an instance of UnitTerm.
visitArrayConstructNode(ASTPtArrayConstructNode) - Method in class ptolemy.data.expr.AbstractParseTreeVisitor
 
visitArrayConstructNode(ASTPtArrayConstructNode) - Method in class ptolemy.data.expr.CParseTreeCodeGenerator
 
visitArrayConstructNode(ASTPtArrayConstructNode) - Method in class ptolemy.data.expr.ParseTreeDumper
 
visitArrayConstructNode(ASTPtArrayConstructNode) - Method in class ptolemy.data.expr.ParseTreeEvaluator
Construct an ArrayToken that contains the tokens from the children of the specified node.
visitArrayConstructNode(ASTPtArrayConstructNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableCollector
 
visitArrayConstructNode(ASTPtArrayConstructNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableRenamer
 
visitArrayConstructNode(ASTPtArrayConstructNode) - Method in class ptolemy.data.expr.ParseTreeSpecializer
 
visitArrayConstructNode(ASTPtArrayConstructNode) - Method in class ptolemy.data.expr.ParseTreeTypeInference
Set the type of the given node to be an ArrayType that is the least upper bound of the types of the node's children.
visitArrayConstructNode(ASTPtArrayConstructNode) - Method in interface ptolemy.data.expr.ParseTreeVisitor
 
visitArrayConstructNode(ASTPtArrayConstructNode) - Method in class ptolemy.data.expr.ParseTreeWriter
 
visitAssignmentNode(ASTPtAssignmentNode) - Method in class ptolemy.data.expr.AbstractParseTreeVisitor
 
visitAssignmentNode(ASTPtAssignmentNode) - Method in interface ptolemy.data.expr.ParseTreeVisitor
 
visitBitwiseNode(ASTPtBitwiseNode) - Method in class ptolemy.data.expr.AbstractParseTreeVisitor
 
visitBitwiseNode(ASTPtBitwiseNode) - Method in class ptolemy.data.expr.CParseTreeCodeGenerator
 
visitBitwiseNode(ASTPtBitwiseNode) - Method in class ptolemy.data.expr.ParseTreeDumper
 
visitBitwiseNode(ASTPtBitwiseNode) - Method in class ptolemy.data.expr.ParseTreeEvaluator
Evaluate a bitwise operator on the children of the specified node, where the particular operator is property of the node.
visitBitwiseNode(ASTPtBitwiseNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableCollector
 
visitBitwiseNode(ASTPtBitwiseNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableRenamer
 
visitBitwiseNode(ASTPtBitwiseNode) - Method in class ptolemy.data.expr.ParseTreeSpecializer
 
visitBitwiseNode(ASTPtBitwiseNode) - Method in class ptolemy.data.expr.ParseTreeTypeInference
Set the type of the given node to be the type that is the least upper bound of the types of the node's children.
visitBitwiseNode(ASTPtBitwiseNode) - Method in interface ptolemy.data.expr.ParseTreeVisitor
 
visitBitwiseNode(ASTPtBitwiseNode) - Method in class ptolemy.data.expr.ParseTreeWriter
 
visitFunctionalIfNode(ASTPtFunctionalIfNode) - Method in class ptolemy.data.expr.AbstractParseTreeVisitor
 
visitFunctionalIfNode(ASTPtFunctionalIfNode) - Method in class ptolemy.data.expr.CParseTreeCodeGenerator
 
visitFunctionalIfNode(ASTPtFunctionalIfNode) - Method in class ptolemy.data.expr.ParseTreeDumper
 
visitFunctionalIfNode(ASTPtFunctionalIfNode) - Method in class ptolemy.data.expr.ParseTreeEvaluator
Evaluate the first child, and depending on its (boolean) result, evaluate either the second or the third child.
visitFunctionalIfNode(ASTPtFunctionalIfNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableCollector
 
visitFunctionalIfNode(ASTPtFunctionalIfNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableRenamer
 
visitFunctionalIfNode(ASTPtFunctionalIfNode) - Method in class ptolemy.data.expr.ParseTreeSpecializer
 
visitFunctionalIfNode(ASTPtFunctionalIfNode) - Method in class ptolemy.data.expr.ParseTreeTypeInference
Set the type of the given node to be the least upper bound of the types of the two branches of the if.
visitFunctionalIfNode(ASTPtFunctionalIfNode) - Method in interface ptolemy.data.expr.ParseTreeVisitor
 
visitFunctionalIfNode(ASTPtFunctionalIfNode) - Method in class ptolemy.data.expr.ParseTreeWriter
 
visitFunctionApplicationNode(ASTPtFunctionApplicationNode) - Method in class ptolemy.data.expr.AbstractParseTreeVisitor
 
visitFunctionApplicationNode(ASTPtFunctionApplicationNode) - Method in class ptolemy.data.expr.CParseTreeCodeGenerator
 
visitFunctionApplicationNode(ASTPtFunctionApplicationNode) - Method in class ptolemy.data.expr.ParseTreeDumper
 
visitFunctionApplicationNode(ASTPtFunctionApplicationNode) - Method in class ptolemy.data.expr.ParseTreeEvaluator
Apply a function to the children of the specified node.
visitFunctionApplicationNode(ASTPtFunctionApplicationNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableCollector
 
visitFunctionApplicationNode(ASTPtFunctionApplicationNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableRenamer
 
visitFunctionApplicationNode(ASTPtFunctionApplicationNode) - Method in class ptolemy.data.expr.ParseTreeSpecializer
 
visitFunctionApplicationNode(ASTPtFunctionApplicationNode) - Method in class ptolemy.data.expr.ParseTreeTypeInference
Set the type of the given node to be the return type of the function determined for the given node.
visitFunctionApplicationNode(ASTPtFunctionApplicationNode) - Method in interface ptolemy.data.expr.ParseTreeVisitor
 
visitFunctionApplicationNode(ASTPtFunctionApplicationNode) - Method in class ptolemy.data.expr.ParseTreeWriter
 
visitFunctionDefinitionNode(ASTPtFunctionDefinitionNode) - Method in class ptolemy.data.expr.AbstractParseTreeVisitor
 
visitFunctionDefinitionNode(ASTPtFunctionDefinitionNode) - Method in class ptolemy.data.expr.CParseTreeCodeGenerator
 
visitFunctionDefinitionNode(ASTPtFunctionDefinitionNode) - Method in class ptolemy.data.expr.ParseTreeDumper
 
visitFunctionDefinitionNode(ASTPtFunctionDefinitionNode) - Method in class ptolemy.data.expr.ParseTreeEvaluator
Define a function, where the children specify the argument types and the expression.
visitFunctionDefinitionNode(ASTPtFunctionDefinitionNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableCollector
 
visitFunctionDefinitionNode(ASTPtFunctionDefinitionNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableRenamer
 
visitFunctionDefinitionNode(ASTPtFunctionDefinitionNode) - Method in class ptolemy.data.expr.ParseTreeSpecializer
 
visitFunctionDefinitionNode(ASTPtFunctionDefinitionNode) - Method in class ptolemy.data.expr.ParseTreeTypeInference
Set the type of the given node to be a function type whose argument types are determined by the children of the node.
visitFunctionDefinitionNode(ASTPtFunctionDefinitionNode) - Method in interface ptolemy.data.expr.ParseTreeVisitor
 
visitFunctionDefinitionNode(ASTPtFunctionDefinitionNode) - Method in class ptolemy.data.expr.ParseTreeWriter
 
visitLeafNode(ASTPtLeafNode) - Method in class ptolemy.data.expr.AbstractParseTreeVisitor
 
visitLeafNode(ASTPtLeafNode) - Method in class ptolemy.data.expr.CParseTreeCodeGenerator
 
visitLeafNode(ASTPtLeafNode) - Method in class ptolemy.data.expr.ParseTreeDumper
 
visitLeafNode(ASTPtLeafNode) - Method in class ptolemy.data.expr.ParseTreeEvaluator
Evaluate a numeric constant or an identifier.
visitLeafNode(ASTPtLeafNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableCollector
 
visitLeafNode(ASTPtLeafNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableRenamer
 
visitLeafNode(ASTPtLeafNode) - Method in class ptolemy.data.expr.ParseTreeSpecializer
 
visitLeafNode(ASTPtLeafNode) - Method in class ptolemy.data.expr.ParseTreeTypeInference
Set the type of the given node to be the type of constant the variable refers to, if the node represents a constant, or the type of the identifier the node refers to in the current scope.
visitLeafNode(ASTPtLeafNode) - Method in interface ptolemy.data.expr.ParseTreeVisitor
 
visitLeafNode(ASTPtLeafNode) - Method in class ptolemy.data.expr.ParseTreeWriter
 
visitLeafNode(ASTPtLeafNode) - Method in class ptolemy.domains.modal.kernel.ParseTreeEvaluatorForGuardExpression
Visit the leaf node.
visitLogicalNode(ASTPtLogicalNode) - Method in class ptolemy.data.expr.AbstractParseTreeVisitor
 
visitLogicalNode(ASTPtLogicalNode) - Method in class ptolemy.data.expr.CParseTreeCodeGenerator
 
visitLogicalNode(ASTPtLogicalNode) - Method in class ptolemy.data.expr.ParseTreeDumper
 
visitLogicalNode(ASTPtLogicalNode) - Method in class ptolemy.data.expr.ParseTreeEvaluator
Evaluate a logical AND or OR on the children of the specified node.
visitLogicalNode(ASTPtLogicalNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableCollector
 
visitLogicalNode(ASTPtLogicalNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableRenamer
 
visitLogicalNode(ASTPtLogicalNode) - Method in class ptolemy.data.expr.ParseTreeSpecializer
 
visitLogicalNode(ASTPtLogicalNode) - Method in class ptolemy.data.expr.ParseTreeTypeInference
Set the type of the given node to be boolean.
visitLogicalNode(ASTPtLogicalNode) - Method in interface ptolemy.data.expr.ParseTreeVisitor
 
visitLogicalNode(ASTPtLogicalNode) - Method in class ptolemy.data.expr.ParseTreeWriter
 
visitLogicalNode(ASTPtLogicalNode) - Method in class ptolemy.domains.modal.kernel.ParseTreeEvaluatorForGuardExpression
Visit the logical node.
visitMatrixConstructNode(ASTPtMatrixConstructNode) - Method in class ptolemy.data.expr.AbstractParseTreeVisitor
 
visitMatrixConstructNode(ASTPtMatrixConstructNode) - Method in class ptolemy.data.expr.CParseTreeCodeGenerator
 
visitMatrixConstructNode(ASTPtMatrixConstructNode) - Method in class ptolemy.data.expr.ParseTreeDumper
 
visitMatrixConstructNode(ASTPtMatrixConstructNode) - Method in class ptolemy.data.expr.ParseTreeEvaluator
Construct a matrix containing the children nodes.
visitMatrixConstructNode(ASTPtMatrixConstructNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableCollector
 
visitMatrixConstructNode(ASTPtMatrixConstructNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableRenamer
 
visitMatrixConstructNode(ASTPtMatrixConstructNode) - Method in class ptolemy.data.expr.ParseTreeSpecializer
 
visitMatrixConstructNode(ASTPtMatrixConstructNode) - Method in class ptolemy.data.expr.ParseTreeTypeInference
Set the type of the given node to be an MatrixType based on the least upper bound of the types of the node's children.
visitMatrixConstructNode(ASTPtMatrixConstructNode) - Method in interface ptolemy.data.expr.ParseTreeVisitor
 
visitMatrixConstructNode(ASTPtMatrixConstructNode) - Method in class ptolemy.data.expr.ParseTreeWriter
 
visitMethodCallNode(ASTPtMethodCallNode) - Method in class ptolemy.data.expr.AbstractParseTreeVisitor
 
visitMethodCallNode(ASTPtMethodCallNode) - Method in class ptolemy.data.expr.CParseTreeCodeGenerator
 
visitMethodCallNode(ASTPtMethodCallNode) - Method in class ptolemy.data.expr.ParseTreeDumper
 
visitMethodCallNode(ASTPtMethodCallNode) - Method in class ptolemy.data.expr.ParseTreeEvaluator
Apply a method to the children of the specified node, where the first child is the object on which the method is defined and the rest of the children are arguments.
visitMethodCallNode(ASTPtMethodCallNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableCollector
 
visitMethodCallNode(ASTPtMethodCallNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableRenamer
 
visitMethodCallNode(ASTPtMethodCallNode) - Method in class ptolemy.data.expr.ParseTreeSpecializer
 
visitMethodCallNode(ASTPtMethodCallNode) - Method in class ptolemy.data.expr.ParseTreeTypeInference
Set the type of the given node to be the return type of the method determined for the given node.
visitMethodCallNode(ASTPtMethodCallNode) - Method in interface ptolemy.data.expr.ParseTreeVisitor
 
visitMethodCallNode(ASTPtMethodCallNode) - Method in class ptolemy.data.expr.ParseTreeWriter
 
visitPowerNode(ASTPtPowerNode) - Method in class ptolemy.data.expr.AbstractParseTreeVisitor
 
visitPowerNode(ASTPtPowerNode) - Method in class ptolemy.data.expr.CParseTreeCodeGenerator
 
visitPowerNode(ASTPtPowerNode) - Method in class ptolemy.data.expr.ParseTreeDumper
 
visitPowerNode(ASTPtPowerNode) - Method in class ptolemy.data.expr.ParseTreeEvaluator
Evaluate the power operator on the children of the specified node.
visitPowerNode(ASTPtPowerNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableCollector
 
visitPowerNode(ASTPtPowerNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableRenamer
 
visitPowerNode(ASTPtPowerNode) - Method in class ptolemy.data.expr.ParseTreeSpecializer
 
visitPowerNode(ASTPtPowerNode) - Method in class ptolemy.data.expr.ParseTreeTypeInference
Set the type of the given node to be the type of the first child of the given node.
visitPowerNode(ASTPtPowerNode) - Method in interface ptolemy.data.expr.ParseTreeVisitor
 
visitPowerNode(ASTPtPowerNode) - Method in class ptolemy.data.expr.ParseTreeWriter
 
visitProductNode(ASTPtProductNode) - Method in class ptolemy.data.expr.AbstractParseTreeVisitor
 
visitProductNode(ASTPtProductNode) - Method in class ptolemy.data.expr.CParseTreeCodeGenerator
 
visitProductNode(ASTPtProductNode) - Method in class ptolemy.data.expr.ParseTreeDumper
 
visitProductNode(ASTPtProductNode) - Method in class ptolemy.data.expr.ParseTreeEvaluator
Multiply the children of the specified node.
visitProductNode(ASTPtProductNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableCollector
 
visitProductNode(ASTPtProductNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableRenamer
 
visitProductNode(ASTPtProductNode) - Method in class ptolemy.data.expr.ParseTreeSpecializer
 
visitProductNode(ASTPtProductNode) - Method in class ptolemy.data.expr.ParseTreeTypeInference
Set the type of the given node to be the least upper bound type of the types of the node's children.
visitProductNode(ASTPtProductNode) - Method in interface ptolemy.data.expr.ParseTreeVisitor
 
visitProductNode(ASTPtProductNode) - Method in class ptolemy.data.expr.ParseTreeWriter
 
visitRecordConstructNode(ASTPtRecordConstructNode) - Method in class ptolemy.data.expr.AbstractParseTreeVisitor
 
visitRecordConstructNode(ASTPtRecordConstructNode) - Method in class ptolemy.data.expr.CParseTreeCodeGenerator
 
visitRecordConstructNode(ASTPtRecordConstructNode) - Method in class ptolemy.data.expr.ParseTreeDumper
 
visitRecordConstructNode(ASTPtRecordConstructNode) - Method in class ptolemy.data.expr.ParseTreeEvaluator
Construct a record by assigning the fields values given by the children nodes.
visitRecordConstructNode(ASTPtRecordConstructNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableCollector
 
visitRecordConstructNode(ASTPtRecordConstructNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableRenamer
 
visitRecordConstructNode(ASTPtRecordConstructNode) - Method in class ptolemy.data.expr.ParseTreeSpecializer
 
visitRecordConstructNode(ASTPtRecordConstructNode) - Method in class ptolemy.data.expr.ParseTreeTypeInference
Set the type of the given node to be a record token that contains fields for each name in the record construction, where the type of each field in the record is determined by the corresponding type of the child nodes.
visitRecordConstructNode(ASTPtRecordConstructNode) - Method in interface ptolemy.data.expr.ParseTreeVisitor
 
visitRecordConstructNode(ASTPtRecordConstructNode) - Method in class ptolemy.data.expr.ParseTreeWriter
 
visitRelationalNode(ASTPtRelationalNode) - Method in class ptolemy.data.expr.AbstractParseTreeVisitor
 
visitRelationalNode(ASTPtRelationalNode) - Method in class ptolemy.data.expr.CParseTreeCodeGenerator
 
visitRelationalNode(ASTPtRelationalNode) - Method in class ptolemy.data.expr.ParseTreeDumper
 
visitRelationalNode(ASTPtRelationalNode) - Method in class ptolemy.data.expr.ParseTreeEvaluator
 
visitRelationalNode(ASTPtRelationalNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableCollector
 
visitRelationalNode(ASTPtRelationalNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableRenamer
 
visitRelationalNode(ASTPtRelationalNode) - Method in class ptolemy.data.expr.ParseTreeSpecializer
 
visitRelationalNode(ASTPtRelationalNode) - Method in class ptolemy.data.expr.ParseTreeTypeInference
Set the type of the given node to be boolean.
visitRelationalNode(ASTPtRelationalNode) - Method in interface ptolemy.data.expr.ParseTreeVisitor
 
visitRelationalNode(ASTPtRelationalNode) - Method in class ptolemy.data.expr.ParseTreeWriter
 
visitRelationalNode(ASTPtRelationalNode) - Method in class ptolemy.domains.modal.kernel.ParseTreeEvaluatorForGuardExpression
Visit the relation node.
visitShiftNode(ASTPtShiftNode) - Method in class ptolemy.data.expr.AbstractParseTreeVisitor
 
visitShiftNode(ASTPtShiftNode) - Method in class ptolemy.data.expr.CParseTreeCodeGenerator
 
visitShiftNode(ASTPtShiftNode) - Method in class ptolemy.data.expr.ParseTreeDumper
 
visitShiftNode(ASTPtShiftNode) - Method in class ptolemy.data.expr.ParseTreeEvaluator
Apply a shift operator to the children of the specified node.
visitShiftNode(ASTPtShiftNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableCollector
 
visitShiftNode(ASTPtShiftNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableRenamer
 
visitShiftNode(ASTPtShiftNode) - Method in class ptolemy.data.expr.ParseTreeSpecializer
 
visitShiftNode(ASTPtShiftNode) - Method in class ptolemy.data.expr.ParseTreeTypeInference
Set the type of the given node to be the type of the first child of the given node.
visitShiftNode(ASTPtShiftNode) - Method in interface ptolemy.data.expr.ParseTreeVisitor
 
visitShiftNode(ASTPtShiftNode) - Method in class ptolemy.data.expr.ParseTreeWriter
 
visitSumNode(ASTPtSumNode) - Method in class ptolemy.data.expr.AbstractParseTreeVisitor
 
visitSumNode(ASTPtSumNode) - Method in class ptolemy.data.expr.CParseTreeCodeGenerator
 
visitSumNode(ASTPtSumNode) - Method in class ptolemy.data.expr.ParseTreeDumper
 
visitSumNode(ASTPtSumNode) - Method in class ptolemy.data.expr.ParseTreeEvaluator
Apply a sum operator to the children of the specified node.
visitSumNode(ASTPtSumNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableCollector
 
visitSumNode(ASTPtSumNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableRenamer
 
visitSumNode(ASTPtSumNode) - Method in class ptolemy.data.expr.ParseTreeSpecializer
 
visitSumNode(ASTPtSumNode) - Method in class ptolemy.data.expr.ParseTreeTypeInference
Set the type of the given node to be the least upper bound type of the types of the node's children.
visitSumNode(ASTPtSumNode) - Method in interface ptolemy.data.expr.ParseTreeVisitor
 
visitSumNode(ASTPtSumNode) - Method in class ptolemy.data.expr.ParseTreeWriter
 
visitUnaryNode(ASTPtUnaryNode) - Method in class ptolemy.data.expr.AbstractParseTreeVisitor
 
visitUnaryNode(ASTPtUnaryNode) - Method in class ptolemy.data.expr.CParseTreeCodeGenerator
 
visitUnaryNode(ASTPtUnaryNode) - Method in class ptolemy.data.expr.ParseTreeDumper
 
visitUnaryNode(ASTPtUnaryNode) - Method in class ptolemy.data.expr.ParseTreeEvaluator
Apply a unary operator to the single child of the specified node.
visitUnaryNode(ASTPtUnaryNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableCollector
 
visitUnaryNode(ASTPtUnaryNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableRenamer
 
visitUnaryNode(ASTPtUnaryNode) - Method in class ptolemy.data.expr.ParseTreeSpecializer
 
visitUnaryNode(ASTPtUnaryNode) - Method in class ptolemy.data.expr.ParseTreeTypeInference
Set the type of the given node to be the type of the child of the given node.
visitUnaryNode(ASTPtUnaryNode) - Method in interface ptolemy.data.expr.ParseTreeVisitor
 
visitUnaryNode(ASTPtUnaryNode) - Method in class ptolemy.data.expr.ParseTreeWriter
 
visitUnionConstructNode(ASTPtUnionConstructNode) - Method in class ptolemy.data.expr.AbstractParseTreeVisitor
 
visitUnionConstructNode(ASTPtUnionConstructNode) - Method in class ptolemy.data.expr.ParseTreeEvaluator
Construct a union by assigning the label value given by the children nodes.
visitUnionConstructNode(ASTPtUnionConstructNode) - Method in interface ptolemy.data.expr.ParseTreeVisitor
 
VisualModelReference - Class in ptolemy.vergil.actor.lib
This is an atomic actor that can execute and/or open a model specified by a file or URL.
VisualModelReference(CompositeEntity, String) - Constructor for class ptolemy.vergil.actor.lib.VisualModelReference
Construct a VisualModelReference with a name and a container.
VisualModelReference.LookInside - Class in ptolemy.vergil.actor.lib
A tableau factory to override the look inside behavior to open the referenced model, if there is one.
VisualSenseApplication - Class in ptolemy.actor.gui.jnlp
A wrapper class that calls eventually calls ptolemy.vergil.VergilApplication for use with Java Network Launching Protocol (JNLP) aka Web Start.
VisualSenseApplication() - Constructor for class ptolemy.actor.gui.jnlp.VisualSenseApplication
 
ViterbiDecoder - Class in ptolemy.actor.lib.comm
The Viterbi algorithm is an optimal way to decode convolutional and trellis codes.
ViterbiDecoder(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.comm.ViterbiDecoder
Construct an actor with the given container and name.
VizActor - Class in org.sdm.spa.actors.piw.viz
This actor is used to visualize data from various sources in SPA's promoter identification workflow.
VizActor(CompositeEntity, String) - Constructor for class org.sdm.spa.actors.piw.viz.VizActor
Construct an actor with the given container and name.
VizApplication - Class in org.sdm.spa.actors.piw.viz
 
VizApplication(boolean) - Constructor for class org.sdm.spa.actors.piw.viz.VizApplication
 
VOID - Static variable in class ptolemy.data.TupleToken
An empty tuple token.
VQDecode - Class in ptolemy.domains.sdf.lib.vq
This actor decompresses a vector quantized signal.
VQDecode(CompositeEntity, String) - Constructor for class ptolemy.domains.sdf.lib.vq.VQDecode
Construct an actor in the specified container with the specified name.

W

wait(Object) - Method in class ptolemy.kernel.util.Workspace
Release all the read accesses held by the current thread and suspend the thread by calling Object.wait() on the specified object.
wait(Object, long) - Method in class ptolemy.kernel.util.Workspace
This method is equivalent to the single argument version except that you can specify a timeout, which is in milliseconds.
waitee - Variable in class ptolemy.domains.de.lib.WaitingTime
An input event here triggers an output event for each waiter input that arrived since the last input here.
waiter - Variable in class ptolemy.domains.de.lib.WaitingTime
An input event here waits for the next event at the waitee input.
waitForCompletion() - Method in class ptolemy.actor.Manager
If there is an active thread created by startRun(), then wait for it to complete and return.
waitForCompletion() - Method in class ptolemy.kernel.util.ChangeRequest
Wait for execution (or failure) of this change request.
waitForCompletionTask() - Method in class ptolemy.kernel.util.test.system.ChangeRequestTest
 
waitForDownloadAndRestart() - Method in class org.kepler.gui.kar.ImportModuleDependenciesAction
Wait for the download to complete.
waitForExportToComplete() - Static method in class ptolemy.vergil.basic.export.html.ExportHTMLAction
Wait for the current invocation of ExportHTMLAction.exportToWeb(BasicGraphFrame, ExportParameters) to complete.
waitForFinish() - Method in class org.kepler.spark.director.SparkJob
Wait until the job in complete.
waitForFinish() - Method in class ptolemy.actor.gui.CompositeActorSimpleApplication
Wait for all windows to close.
waitForFinish() - Method in class ptolemy.actor.gui.ConfigurationApplication
Wait for all executing runs to finish, then return.
waitForFinish() - Method in class ptolemy.moml.MoMLSimpleApplication
Wait for all executing runs to finish, then return.
waitForFinish() - Method in class ptolemy.moml.MoMLSimpleTimeoutApplication
Wait for all executing runs to finish or 5 seconds to pass, then return.
waitForNewInputs() - Method in class ptolemy.domains.de.kernel.DEThreadActor
Clear input ports then wait until input events arrive.
waitForNewInputs(IOPort[]) - Method in class ptolemy.domains.de.kernel.DEThreadActor
Wait for new inputs on the specified array of ports.
waitForProcess - Variable in class org.sdm.spa.CommandLineExec
 
waitForProcess - Variable in class ptolemy.actor.lib.Exec
If true, then actor will wait until subprocess completes.
waitForShutdown(String[]) - Static method in class org.kepler.module.webview.Shutdown
Block until the servers have shutdown.
WAITING - Static variable in class org.kepler.monitor.MonitoredStatus.State
Value for a "waiting" state.
WaitingTime - Class in ptolemy.domains.de.lib
This actor measures the time that events at one input have to wait for events at another.
WaitingTime(CompositeEntity, String) - Constructor for class ptolemy.domains.de.lib.WaitingTime
Construct an actor with the specified container and name.
waitUntil - Variable in class org.kepler.actor.job.GenericJobLauncher
Wait until the job has a reached specific status.
waitUntil - Variable in class org.kepler.actor.job.GenericJobReconnect
Wait until the job has a reached specific status.
waitUntil - Variable in class org.kepler.actor.job.JobStatus
Wait until the job has a specific status.
WallClockTime - Class in ptolemy.actor.lib
Upon firing, this actor outputs the elapsed real time in seconds since the start time of the model, as reported by the director.
WallClockTime(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.WallClockTime
Construct an actor with the given container and name.
warning(SAXParseException) - Method in class ptolemy.configs.test.ValidatingXMLParser
 
warning(String) - Static method in class ptolemy.util.MessageHandler
Defer to the set message handler to show the specified message in a modal dialog.
warning(String, Throwable) - Static method in class ptolemy.util.MessageHandler
Show the specified message and throwable information in a modal dialog.
warningEnabled - Variable in class ptolemy.data.expr.ConstraintMonitor
If true (the default), then a warning is issued when the aggregate value equals or exceeds the specified ConstraintMonitor.threshold.
warnings - Variable in class org.sdm.spa.actors.transport.GenericFileCopier
The string representation of all the warnings that happened during the execution of the actor, if there are any.
warnUser(String) - Method in class org.kepler.gis.display.JumpMapTab
Description of the Method
wasParsed() - Method in class org.kepler.CommandLineArgument
Returns true if the last call to parseRemainingArgs() succeeded.
wasParsed(String) - Static method in class org.kepler.CommandLineArgument
Returns true if the last call to parseRemainingArgs() succeeded.
wasTransitionTaken() - Method in class ptolemy.domains.modal.kernel.FSMActor
Return true if a transition was taken in the previous iteration, or if this is before the first iteration concludes, true if during initialize an immediate transition was taken.
WatchDog - Class in ptolemy.util.test
This class creates a Timer that calls System.exit() after a certain amount of time.
WatchDog(long) - Constructor for class ptolemy.util.test.WatchDog
Create a timer that will go off after timeToDie milliseconds.
watchDogWentOff - Variable in class ptolemy.util.test.WatchDog
Set to true if the watch time timer interval has passed.
watchForLSIDChangesStr - Static variable in class org.kepler.provenance.sql.SQLRecordingV8.SQLRecordingParametersV8
Name of watch for LSID changes parameter.
Waveform - Class in ptolemy.domains.continuous.lib
This actor produces a periodic continuous-time signal defined by a periodic sequence of samples and an interpolation method.
Waveform(CompositeEntity, String) - Constructor for class ptolemy.domains.continuous.lib.Waveform
Construct an actor with the specified container and name.
WebAttribute - Class in ptolemy.vergil.basic.export.web
Class containing information and methods for properties for web content, for example, an HTML attribute that is part of an HTML element, as in the "href" attribute of <a href="http://www.w3schools.com">This is a link</a> The _elementName is used as the name of the attribute, e.g.
WebAttribute(NamedObj, String) - Constructor for class ptolemy.vergil.basic.export.web.WebAttribute
Create an instance of this parameter.
WebContent - Class in ptolemy.vergil.basic.export.web
Base class for attributes defining content for export to web.
WebContent(NamedObj, String) - Constructor for class ptolemy.vergil.basic.export.web.WebContent
Create an instance of this parameter.
WebElement - Class in ptolemy.vergil.basic.export.web
Attribute containing information and methods for web elements, for example, HTML tags and content, as in <div> This is some HTML content </div> The full name including the _elementName is used as WebElement's web id.
WebElement(NamedObj, String) - Constructor for class ptolemy.vergil.basic.export.web.WebElement
Create an instance of this parameter.
WebExportable - Interface in ptolemy.vergil.basic.export.web
Interface for parameters that provide web export content.
WebExporter - Interface in ptolemy.vergil.basic.export.web
Interface for an object that provides a web exporting service for a Ptolemy II model.
WebExportParameters - Class in ptolemy.vergil.basic.export.web
Container for parameters that customize web export.
WebExportParameters(NamedObj, String) - Constructor for class ptolemy.vergil.basic.export.web.WebExportParameters
Construct an attribute with the given name contained by the specified entity.
WebService - Class in org.sdm.spa
The WebService actor provides the user with a plug-in interface to execute any WSDL-defined web service.
WebService(CompositeEntity, String) - Constructor for class org.sdm.spa.WebService
Construct a WebService actor with the given container and name.
WebServiceStub - Class in org.sdm.spa
Deprecated.
Use org.sdm.spa.WebService or org.sdm.spa.WSWithComplexTypes instead
WebServiceStub(CompositeEntity, String) - Constructor for class org.sdm.spa.WebServiceStub
Deprecated.
Construct a WebServiceStub actor with the given container and name.
websocketHost - Variable in class org.kepler.spark.mllib.GetLiveMeasurements
 
websocketPort - Variable in class org.kepler.spark.mllib.GetLiveMeasurements
 
WebSocketServerBaseHandler - Class in org.kepler.webview.server.handler
Handler base class for ServerWebSocket.
WebSocketServerBaseHandler(WebViewServer) - Constructor for class org.kepler.webview.server.handler.WebSocketServerBaseHandler
 
websocketUri - Variable in class org.kepler.spark.mllib.GetLiveMeasurements
 
WebView - Class in org.kepler.webview.actor
 
WebView(CompositeEntity, String) - Constructor for class org.kepler.webview.actor.WebView
Create a new WebView in a container with the specified name.
webView - Variable in class org.kepler.webview.actor.WebView
 
WEBVIEW_SERVER_DAEMON_FLAG - Static variable in class org.kepler.webview.server.WebViewConfiguration
Command line flag to run the server in daemon mode.
WEBVIEW_SERVER_INSTANCES_FLAG - Static variable in class org.kepler.webview.server.WebViewConfiguration
Command line flag to specify the number of server instances.
WEBVIEW_SERVER_PORT_FLAG - Static variable in class org.kepler.webview.server.WebViewConfiguration
Command line flag to specify the server port.
WEBVIEW_SERVER_ROOT_DIR_FLAG - Static variable in class org.kepler.webview.server.WebViewConfiguration
Command line flag to specify the root directory.
WEBVIEW_START_SERVER_FLAG - Static variable in class org.kepler.webview.server.WebViewConfiguration
Command line flag to start the server.
WebViewable - Interface in org.kepler.webview.actor
 
WebViewableUtilities - Class in org.kepler.webview.server
 
WebViewableUtilities.Event - Enum in org.kepler.webview.server
 
WebViewAttribute - Class in org.kepler.webview.actor
 
WebViewAttribute(NamedObj, String) - Constructor for class org.kepler.webview.actor.WebViewAttribute
 
WebViewAuthHandlerImpl - Class in org.kepler.webview.server.auth
Basic authentication handler that uses "WebView" as the scheme instead of "Basic" so that 401 responses are not caught by the browser.
WebViewAuthHandlerImpl(AuthProvider, String) - Constructor for class org.kepler.webview.server.auth.WebViewAuthHandlerImpl
 
WebViewConfiguration - Class in org.kepler.webview.server
Utility class to read WebView configuration.
WebViewConverter - Class in org.kepler.gis.data
Class to convert between VectorTokens and JSON strings.
WebViewConverter() - Constructor for class org.kepler.gis.data.WebViewConverter
 
WebViewId - Class in org.kepler.webview.server
 
WebViewRecording - Class in org.kepler.webview.provenance
 
WebViewRecording() - Constructor for class org.kepler.webview.provenance.WebViewRecording
 
WebViewServer - Class in org.kepler.webview.server
 
WebViewServer() - Constructor for class org.kepler.webview.server.WebViewServer
 
WEEK - Static variable in class org.kepler.workflowscheduler.gui.Schedule
 
weightArray(Collection) - Static method in class ptolemy.graph.Graph
Given a collection of graph elements (nodes and edges), return an array of weights associated with these elements.
weightDump(Object) - Static method in exception ptolemy.graph.GraphException
Return a dump of a weight and the container graph suitable to be appended to an error message.
WelcomeScreen - Class in org.kepler.gui
A welcome screen which is displayed on Kepler Startup.
WelcomeScreen(String) - Constructor for class org.kepler.gui.WelcomeScreen
Construct the main panel.Further add subPanels to the main panel, namely infoPanel and buttonPanel. infoPanel is the bordered panel, consisting of Welcome message and "Getting Started" links for scientist and programmers.
WelcomeScreen.BrowserLauncher - Class in org.kepler.gui
BrowserLauncher to launch URL on the WelcomeScreen
WelcomeWindow - Class in ptolemy.actor.gui
A toplevel frame that can view HTML documents, but has no menus.
WelcomeWindow() - Constructor for class ptolemy.actor.gui.WelcomeWindow
Construct a blank HTML Viewer with no menu items.
WelcomeWindowTableau - Class in ptolemy.actor.gui
A tableau representing a rendered HTML view in a toplevel window that has no menu choices.
WelcomeWindowTableau(Effigy, String) - Constructor for class ptolemy.actor.gui.WelcomeWindowTableau
Construct a new tableau for the model represented by the given effigy.
wellFormedSemTypes() - Method in class org.kepler.sms.gui.ActorSemanticTypeEditorPane
TODO: Check for valid semantic types
wellFormedSemTypes() - Method in class org.kepler.sms.gui.PortSemanticTypeEditorPane
TODO: Determine checks for well-formed annotations
wellFormedSemTypes() - Method in class org.kepler.sms.gui.SemanticTypeTable
 
WEST - Static variable in class org.kepler.reporting.rio.ItemLabel
 
wfNameParamStr - Static variable in class org.kepler.provenance.sql.SQLRecordingParameters
The name of the workflow name parameter.
WHERE - Static variable in class org.ecoinformatics.seek.dataquery.DBTablesGenerator
 
whole - Variable in class org.resurgence.actor.StringAccumulator
The output port, which contains the full string.
WHOLETYPE - Static variable in class org.kepler.objectmanager.data.DataType
 
WidgetFactory - Class in org.kepler.gui
A utilities class for creating Swing UI widgets
width - Static variable in class org.geon.TernaryDiagram
 
width - Variable in class org.kepler.gis.actor.conversions.VectorToRaster
The width of the raster in pixels.
width - Variable in class ptolemy.actor.gui.style.TextStyle
The width (in characters) of the text box.
width - Variable in class ptolemy.actor.IORelation
The width of this relation.
width - Variable in class ptolemy.actor.lib.gui.MatrixViewer
The width of the table in pixels.
width - Variable in class ptolemy.actor.lib.gui.SequenceScope
The width of the X axis, in number of samples (an integer).
width - Variable in class ptolemy.actor.lib.gui.TimedScope
The width of the X axis (a double).
width - Variable in class ptolemy.vergil.basic.export.web.WebContent
Parameter specifying the width of the editing box.
width - Variable in class ptolemy.vergil.kernel.attributes.FilledShapeAttribute
The horizontal extent.
WIDTH_TO_INFER - Static variable in class ptolemy.actor.IORelation
The value of the width we should infer.
WILDCARD - Static variable in class org.ecoinformatics.seek.querybuilder.DBQueryDefParserEmitter
 
willPad - Variable in class org.kepler.data.datasource.dataturbine.DataTurbine
padding is not always possible.
WINDOW_TYPE_BARTLETT - Static variable in class ptolemy.math.SignalProcessing
To select the Bartlett (triangular) window, w[n] = 2n/M for 0 ≤ n ≤ M/2
w[n] = 2 - 2n/M for M/2 < n ≤ M use this window type.
WINDOW_TYPE_BLACKMAN - Static variable in class ptolemy.math.SignalProcessing
To select the Blackman window, w[n] = 0.42 - 0.5 cos(2 * PI * n /M) +
0.08 cos (4 * PI * n / M)
for 0 ≤ n ≤ M use this window type.
WINDOW_TYPE_BLACKMAN_HARRIS - Static variable in class ptolemy.math.SignalProcessing
To select the 4-term Blackman-Harris window, w[n] = 0.35875 - 0.48829 cos(2 * PI * n /M) +
0.14128 cos (4 * PI * n / M) - 0.01168 cos(6 * PI * n / M)
for 0 ≤ n ≤ M use this window type.
WINDOW_TYPE_HAMMING - Static variable in class ptolemy.math.SignalProcessing
To select the Hamming window, w[n] = 0.54 - 0.46 cos(2 * PI * n / M)
for 0 ≤ n ≤ M use this window type.
WINDOW_TYPE_HANNING - Static variable in class ptolemy.math.SignalProcessing
To select the Hanning window, w[n] = 0.5 - 0.5 cos(2 * PI * n / M)
for 0 ≤ n ≤ M use this window type.
WINDOW_TYPE_RECTANGULAR - Static variable in class ptolemy.math.SignalProcessing
To select the rectangular window, w[n] = 1 for 0 ≤ n ≤ M use this window type.
WINDOW_TYPES - Static variable in class ptolemy.math.SignalProcessing
The number of window types that can be generated.
windowClosed(Window, String) - Method in class ptolemy.actor.gui.Configurer
Notify any panels in this configurer that implement the CloseListener interface that the specified window has closed.
windowClosed(Window, String) - Method in class ptolemy.actor.gui.ModelPane
Notify the contained instances of PtolemyQuery that the window has been closed, and remove all Placeable displays by calling place(null).
windowClosed(Window, String) - Method in class ptolemy.actor.gui.PtolemyQuery
Unsubscribe as a listener to all objects that we have subscribed to.
windowClosed(Window, String) - Method in class ptolemy.actor.gui.run.CustomizableRunPane
Notify the contained instances of PtolemyQuery that the window has been closed, and remove all Placeable displays by calling place(null).
windowClosed(Window, String) - Method in interface ptolemy.gui.CloseListener
Notify that the specified window has closed.
windowClosing(WindowEvent) - Method in class ptolemy.actor.gui.AbstractPlaceableJavaSE.WindowClosingAdapter
 
WindowClosingAdapter() - Constructor for class ptolemy.actor.gui.AbstractPlaceableJavaSE.WindowClosingAdapter
 
windowGainedFocus(WindowEvent) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
 
windowGainedFocus(WindowEvent) - Method in class ptolemy.gui.Top
Register with the global message handler to receive status messages.
WindowIdentifier - Class in org.kepler.tagging
Created by IntelliJ IDEA.
WindowIdentifier(String, KeplerGraphFrame) - Constructor for class org.kepler.tagging.WindowIdentifier
 
WindowIdentifier(int, KeplerGraphFrame) - Constructor for class org.kepler.tagging.WindowIdentifier
 
windowLostFocus(WindowEvent) - Method in class org.kepler.reporting.gui.ReportDesignerPanel
 
windowLostFocus(WindowEvent) - Method in class ptolemy.gui.Top
Unregister with the global message handler to receive status messages.
WindowPropertiesAttribute - Class in ptolemy.actor.gui
This attribute stores properties of a window, including the width, height, and location.
WindowPropertiesAttribute(NamedObj, String) - Constructor for class ptolemy.actor.gui.WindowPropertiesAttribute
Construct an attribute with the given name contained by the specified entity.
WINDOWS - Static variable in class org.kepler.gui.StaticGUIResources
 
Wire - Class in ptolemy.domains.de.lib
Deprecated.
Use Sampler instead.
Wire(CompositeEntity, String) - Constructor for class ptolemy.domains.de.lib.Wire
Deprecated.
Construct an actor with the given container and name.
WithIconGraphController - Class in ptolemy.vergil.basic
A base class for Ptolemy II graph controllers for objects that can have icons.
WithIconGraphController() - Constructor for class ptolemy.vergil.basic.WithIconGraphController
Create a new controller.
WithIconGraphController.NewPortAction - Class in ptolemy.vergil.basic
An action to create a new port.
within(Token, Token, double) - Static method in class ptolemy.data.expr.UtilityFunctions
Return true if the first argument is close in value to the second, where "close" means that it is within the distance given by the third argument.
within(Complex[], Complex[], Complex) - Static method in class ptolemy.math.ComplexArrayMath
Return true if all the distances between corresponding elements array1 and array2 are all less than or equal to the magnitude of maxError.
within(Complex[], Complex[], double) - Static method in class ptolemy.math.ComplexArrayMath
Return true if all the distances between corresponding elements array1 and array2 are all less than or equal to maxError.
within(Complex[], Complex[], double[]) - Static method in class ptolemy.math.ComplexArrayMath
Return true if all the distances between corresponding elements array1 and array2 are all less than or equal to the corresponding elements in maxError.
within(Complex[], Complex[], Complex[]) - Static method in class ptolemy.math.ComplexArrayMath
Return true if all the distances between corresponding elements array1 and array2 are all less than or equal to the magnitudes of the corresponding elements in maxError.
within(Complex[][], Complex[][], Complex) - Static method in class ptolemy.math.ComplexMatrixMath
Return true if all the distances between corresponding elements in matrix1 and matrix2 are all less than or equal to the magnitude of maxError.
within(Complex[][], Complex[][], double) - Static method in class ptolemy.math.ComplexMatrixMath
Return true if all the distances between corresponding elements in matrix1 and matrix2 are all less than or equal to the magnitude of maxError.
within(Complex[][], Complex[][], double[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Return true if all the distances between corresponding elements in matrix1 and matrix2 are all less than or equal to corresponding elements in maxError.
within(Complex[][], Complex[][], Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Return true if all the distances between corresponding elements in matrix1 and matrix2 are all less than or equal to the magnitude of the corresponding element in maxError.
within(double[], double[], double) - Static method in class ptolemy.math.DoubleArrayMath
Return true if all the distances between corresponding elements array1 and array2 are all less than or equal to the corresponding elements in maxError.
within(double[], double[], double[]) - Static method in class ptolemy.math.DoubleArrayMath
Return true if all the distances between corresponding elements array1 and array2 are all less than or equal to the corresponding elements in maxError.
within(double[][], double[][], double) - Static method in class ptolemy.math.DoubleMatrixMath
Return true if the elements of the two matrices differ by no more than the specified distance.
within(double[][], double[][], double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Return true if the elements of the two matrices differ by no more than the specified distances.
within(float[], float[], float) - Static method in class ptolemy.math.FloatArrayMath
Return true if all the distances between corresponding elements array1 and array2 are all less than or equal to the corresponding elements in maxError.
within(float[], float[], float[]) - Static method in class ptolemy.math.FloatArrayMath
Return true if all the distances between corresponding elements array1 and array2 are all less than or equal to the corresponding elements in maxError.
within(float[][], float[][], float) - Static method in class ptolemy.math.FloatMatrixMath
Return true if the elements of the two matrices differ by no more than the specified distance.
within(float[][], float[][], float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Return true if the elements of the two matrices differ by no more than the specified distances.
within(int[], int[], int) - Static method in class ptolemy.math.IntegerArrayMath
Return true if all the distances between corresponding elements array1 and array2 are all less than or equal to the corresponding elements in maxError.
within(int[], int[], int[]) - Static method in class ptolemy.math.IntegerArrayMath
Return true if all the distances between corresponding elements array1 and array2 are all less than or equal to the corresponding elements in maxError.
within(int[][], int[][], int) - Static method in class ptolemy.math.IntegerMatrixMath
Return true if the elements of the two matrices differ by no more than the specified distance.
within(int[][], int[][], int[][]) - Static method in class ptolemy.math.IntegerMatrixMath
Return true if the elements of the two matrices differ by no more than the specified distances.
within(long[], long[], long) - Static method in class ptolemy.math.LongArrayMath
Return true if all the distances between corresponding elements array1 and array2 are all less than or equal to the corresponding elements in maxError.
within(long[], long[], long[]) - Static method in class ptolemy.math.LongArrayMath
Return true if all the distances between corresponding elements array1 and array2 are all less than or equal to the corresponding elements in maxError.
within(long[][], long[][], long) - Static method in class ptolemy.math.LongMatrixMath
Return true if the elements of the two matrices differ by no more than the specified distance.
within(long[][], long[][], long[][]) - Static method in class ptolemy.math.LongMatrixMath
Return true if the elements of the two matrices differ by no more than the specified distances.
WmsdActor - Class in org.eol
Description of the Class
WmsdActor(CompositeEntity, String) - Constructor for class org.eol.WmsdActor
 
woody - Variable in class org.kepler.gis.actor.landscape.CreateLandscape
Woody raster (optional).
wordLength - Variable in class ptolemy.actor.lib.comm.Slicer
The word length is the number of boolean output that are produced on each firing.
wordLength - Variable in class ptolemy.domains.sdf.lib.LineCoder
The word length is the number of boolean inputs that are consumed to construct an index into the table.
workdir - Variable in class org.kepler.actor.job.GenericJobLauncher
The working directory in which the actual job submission command will be executed (on the remote machine if the job manager is a remote jobmanager).
workdir - Variable in class org.kepler.actor.job.GenericJobReconnect
The working directory in which the actual job submission command will be executed (on the remote machine if the job manager is a remote jobmanager).
workdir - Variable in class org.kepler.actor.job.JobCreator
The working directory in which the actual job submission command will be executed (on the remote machine if the job manager is a remote jobmanager).
WORKFLOW - Static variable in class org.kepler.objectmanager.lsid.KeplerLSID
 
Workflow - Class in org.kepler.workflow
 
Workflow(TableauFrame, KeplerLSID) - Constructor for class org.kepler.workflow.Workflow
 
WORKFLOW_ALREADY_EXISTS - Static variable in class org.kepler.provenance.sql.SQLRecording
 
WORKFLOW_DOES_NOT_EXIST - Static variable in class org.kepler.provenance.sql.SQLRecording
 
WORKFLOW_EXECUTION_COMPLETE - Static variable in class org.kepler.gui.state.StateChangeEvent
Public constant to denote that a workflow is done executing
WORKFLOW_NAME - Static variable in class org.kepler.workflowrunmanager.WRMDefaults
 
WORKFLOW_NAME_COLUMN_WIDTH - Static variable in class org.kepler.workflowrunmanager.WRMDefaults
 
WORKFLOW_RENAMED - Static variable in class org.kepler.workflowrunmanager.WorkflowRunManagerEvent
 
WORKFLOW_TARGET_TYPE - Static variable in class org.kepler.gui.AbstractDialogTab
 
WorkflowExecute - Class in org.geon
Deprecated.
This class is mostly duplicated by org.geon.LidarWorkflowExecute. Use org.geon.LidarWorkflowExecute instead since it provides more functionality.
WorkflowExecute() - Constructor for class org.geon.WorkflowExecute
Deprecated.
 
workflowExists(KeplerLSID) - Method in class org.kepler.workflow.WorkflowManager
 
WorkflowHandler - Class in org.kepler.webview.server.handler
 
WorkflowHandler(WebViewServer) - Constructor for class org.kepler.webview.server.handler.WorkflowHandler
 
workflowLsid - Variable in class org.kepler.reporting.roml.ReportLayout
 
WorkflowManager - Class in org.kepler.workflow
This singleton class manages a list of workflows.
WorkflowManager() - Constructor for class org.kepler.workflow.WorkflowManager
 
WorkflowOutlinePanel - Class in org.kepler.gui
 
WorkflowOutlinePanel(CompositeEntity, boolean, boolean, boolean) - Constructor for class org.kepler.gui.WorkflowOutlinePanel
 
WorkflowOutlineTabPane - Class in org.kepler.gui
 
WorkflowOutlineTabPane() - Constructor for class org.kepler.gui.WorkflowOutlineTabPane
 
WorkflowOutlineTabPane.Factory - Class in org.kepler.gui
A factory that creates the library panel for the editors.
WorkflowOutlineTreeActorFireModel - Class in org.kepler.profiling.gui
A TreeModel for a workflow outline showing actor firing information.
WorkflowOutlineTreeActorFireModel(CompositeEntity) - Constructor for class org.kepler.profiling.gui.WorkflowOutlineTreeActorFireModel
 
WorkflowOutlineTreeModel - Class in org.kepler.gui
This class displays all class and entities as well as directors in the Tree.
WorkflowOutlineTreeModel(CompositeEntity) - Constructor for class org.kepler.gui.WorkflowOutlineTreeModel
 
WorkflowRenameListener - Interface in org.kepler.util
Interface for listeners to receive workflow rename events.
WorkflowRenameManager - Class in org.kepler.util
 
WorkflowResults - Class in org.kepler.cloudsharing.util
A collection of results from a workflow execution.
WorkflowResults() - Constructor for class org.kepler.cloudsharing.util.WorkflowResults
 
WorkflowResults.Privacy - Enum in org.kepler.cloudsharing.util
The privacy setting.
WORKFLOWRUENGINE - Static variable in class org.kepler.workflowscheduler.gui.URLHyperLinkListener
 
WorkflowRun - Class in org.kepler.util
A class containing workflow execution metadata.
WorkflowRun(Workspace, String) - Constructor for class org.kepler.util.WorkflowRun
 
WorkflowRun() - Constructor for class org.kepler.util.WorkflowRun
 
WorkflowRun(KeplerLSID, String, String, String, KeplerLSID, Date, Long, Integer, Map<Integer, String>, String, String, String, String, Map<NamedOntClass, String>) - Constructor for class org.kepler.util.WorkflowRun
Constructor.
WorkflowRun.RunAttribute - Enum in org.kepler.util
 
WorkflowRun.type - Enum in org.kepler.util
 
WORKFLOWRUN_SELECTED - Static variable in class org.kepler.util.WorkflowRun
 
WorkflowRunBuilder - Class in org.kepler.util
A class for building a WorkflowRun piecemeal from property Strings.
WorkflowRunBuilder() - Constructor for class org.kepler.util.WorkflowRunBuilder
 
WorkflowRunCacheObject - Class in org.kepler.objectmanager.cache
Class that represents an object in the CacheManager.
WorkflowRunCacheObject() - Constructor for class org.kepler.objectmanager.cache.WorkflowRunCacheObject
 
WorkflowRunCacheObject(String, KeplerLSID, WorkflowRun) - Constructor for class org.kepler.objectmanager.cache.WorkflowRunCacheObject
Create a WorkflowRunCacheObject from given run, put it into cache and return the WorkflowRunCacheObject.
WORKFLOWRUNENGINE - Static variable in class org.kepler.module.workflowschedulergui.Initialize
 
WorkflowRunEngine - Class in org.kepler.workflowscheduler.gui
Class represents a WorkflowRunEngine object - name and url
WorkflowRunEngine(String) - Constructor for class org.kepler.workflowscheduler.gui.WorkflowRunEngine
Constructor
WORKFLOWRUNENGINECOMBOBOX - Static variable in class org.kepler.workflowscheduler.gui.WorkflowSchedulerPanel
 
WorkflowRunEngineConfigurationChangeListener - Interface in org.kepler.workflowscheduler.gui.configurationwizard
A calling back interface when WorkflowRunEngineConfiguration is changed.
WorkflowRunEngineConfigurationDialog - Class in org.kepler.workflowscheduler.gui.configurationwizard
A dialog to configure the workflow run engines.
WorkflowRunEngineConfigurationDialog(TableauFrame) - Constructor for class org.kepler.workflowscheduler.gui.configurationwizard.WorkflowRunEngineConfigurationDialog
Constructor
WORKFLOWRUNENGINELIST - Static variable in class org.kepler.module.workflowschedulergui.Initialize
 
WorkflowRunEnginePreferenceTab - Class in org.kepler.workflowscheduler.gui.configurationwizard
A Tab shows in the Preference Frame to configure the workflow run engine
WorkflowRunEnginePreferenceTab() - Constructor for class org.kepler.workflowscheduler.gui.configurationwizard.WorkflowRunEnginePreferenceTab
 
WorkflowRunEnginePreferenceTab.Factory - Class in org.kepler.workflowscheduler.gui.configurationwizard
A factory that creates the preference panel for the PreferencesFrame.
WorkflowRunEntryHandler - Class in org.kepler.kar.handlers
 
WorkflowRunEntryHandler() - Constructor for class org.kepler.kar.handlers.WorkflowRunEntryHandler
 
WorkflowRunEntryHandler.Factory - Class in org.kepler.kar.handlers
A factory that creates a KAREntryHandler object.
WorkflowRunManager - Class in org.kepler.workflowrunmanager
 
WorkflowRunManager(ProvenanceStore) - Constructor for class org.kepler.workflowrunmanager.WorkflowRunManager
Constructor.
WorkflowRunManagerEvent - Class in org.kepler.workflowrunmanager
 
WorkflowRunManagerEvent(Object, String, List<KeplerLSID>, boolean, Object) - Constructor for class org.kepler.workflowrunmanager.WorkflowRunManagerEvent
 
WorkflowRunManagerEventListener - Interface in org.kepler.workflowrunmanager
 
workflowRunManagerEventOccurred(WorkflowRunManagerEvent) - Method in class org.kepler.workflowrunmanager.gui.WorkflowRunManagerPanel
 
workflowRunManagerEventOccurred(WorkflowRunManagerEvent) - Method in class org.kepler.workflowrunmanager.WorkflowRunManager
 
workflowRunManagerEventOccurred(WorkflowRunManagerEvent) - Method in interface org.kepler.workflowrunmanager.WorkflowRunManagerEventListener
 
WorkflowRunManagerManager - Class in org.kepler.workflowrunmanager
 
WorkflowRunManagerManager() - Constructor for class org.kepler.workflowrunmanager.WorkflowRunManagerManager
 
WorkflowRunManagerPanel - Class in org.kepler.workflowrunmanager.gui
WorkflowRunManager TabPane
WorkflowRunManagerPanel() - Constructor for class org.kepler.workflowrunmanager.gui.WorkflowRunManagerPanel
 
WorkflowRunManagerPanel.Factory - Class in org.kepler.workflowrunmanager.gui
A factory that creates a TabPane.
WorkflowRunManagerRecording - Class in org.kepler.workflowrunmanager
Receive provenance events and update the WorkflowRunManager GUI.
WorkflowRunManagerRecording(WorkflowRunManager) - Constructor for class org.kepler.workflowrunmanager.WorkflowRunManagerRecording
Construct a new WorkflowRunManagerRecording.
WorkflowRunManagerTableModel - Class in org.kepler.workflowrunmanager.gui
 
WorkflowRunManagerTableModel(TableauFrame) - Constructor for class org.kepler.workflowrunmanager.gui.WorkflowRunManagerTableModel
 
WorkflowRunOutlineTabPane - Class in org.kepler.profiling.gui
A base class for tab panes showing a workflow outline.
WorkflowRunOutlineTabPane() - Constructor for class org.kepler.profiling.gui.WorkflowRunOutlineTabPane
 
WorkflowRunUtil - Class in org.kepler.util
 
WorkflowRunUtil() - Constructor for class org.kepler.util.WorkflowRunUtil
 
WorkflowSchedulerComponentLibraryTab - Class in org.kepler.workflowscheduler.gui
Class represents the component library tab on the left side of the scheduler
WorkflowSchedulerComponentLibraryTab(TableauFrame) - Constructor for class org.kepler.workflowscheduler.gui.WorkflowSchedulerComponentLibraryTab
Constructor
WorkflowSchedulerConfigEvent - Interface in org.kepler.workflowscheduler.gui.configurationwizard
Holding string constant for event
WorkflowSchedulerDialog - Class in org.kepler.workflowscheduler.gui
A dialog to display the workflow scheduler.
WorkflowSchedulerDialog(TableauFrame) - Constructor for class org.kepler.workflowscheduler.gui.WorkflowSchedulerDialog
Constructor
WorkflowSchedulerPanel - Class in org.kepler.workflowscheduler.gui
A tab pane to display a scheduler of a server workflow.
WorkflowSchedulerPanel(TableauFrame, WorkflowSchedulerParentPanel, ScheduleChangeController) - Constructor for class org.kepler.workflowscheduler.gui.WorkflowSchedulerPanel
Construct a new ServerWorkflowSchedulePanel in a frame with a specific title.
WorkflowSchedulerParentPanel - Class in org.kepler.workflowscheduler.gui
This class represents the right panel of the scheduler dialog object.
WorkflowSchedulerParentPanel(TableauFrame, ScheduleChangeController) - Constructor for class org.kepler.workflowscheduler.gui.WorkflowSchedulerParentPanel
Constructor
WorkflowSchedulerPreferenceTab - Class in org.kepler.workflowscheduler.gui.configurationwizard
A Tab shows in the Preference Frame to configure workflow scheduler
WorkflowSchedulerPreferenceTab() - Constructor for class org.kepler.workflowscheduler.gui.configurationwizard.WorkflowSchedulerPreferenceTab
 
WorkflowSchedulerPreferenceTab.Factory - Class in org.kepler.workflowscheduler.gui.configurationwizard
A factory that creates the ServicesListModification panel for the PreferencesFrame.
WorkflowSchedulerServerInstallationInfoPanel - Class in org.kepler.workflowscheduler.gui
This panel will show the information for user to how to configure the configuration file and install workflow scheduler server and workflow run engine.
WorkflowSchedulerServerInstallationInfoPanel(TableauFrame, WorkflowSchedulerDialog) - Constructor for class org.kepler.workflowscheduler.gui.WorkflowSchedulerServerInstallationInfoPanel
Constructor
WORKFLOWSCHEDULERURL - Static variable in class org.kepler.workflowscheduler.gui.URLHyperLinkListener
 
WorkflowSchedulerURLConfigurationDialog - Class in org.kepler.workflowscheduler.gui.configurationwizard
This dialog provide a interface for user to add a workflow scheduler url
WorkflowSchedulerURLConfigurationDialog(TableauFrame) - Constructor for class org.kepler.workflowscheduler.gui.configurationwizard.WorkflowSchedulerURLConfigurationDialog
Constructor
WorkflowTypeCheckerDialog - Class in org.kepler.sms.gui
This dialog provides a simple interface for performing semantic and structural static type checking.
WorkflowTypeCheckerDialog(Frame, Entity) - Constructor for class org.kepler.sms.gui.WorkflowTypeCheckerDialog
Default construct
WorkflowTypeCheckerDialogAction - Class in org.kepler.gui
An action that will create a WorkflowValidationDialog
WorkflowTypeCheckerDialogAction() - Constructor for class org.kepler.gui.WorkflowTypeCheckerDialogAction
 
WorkflowTypeCheckerDialogAction(TableauFrame) - Constructor for class org.kepler.gui.WorkflowTypeCheckerDialogAction
Constructor
WorkflowWebSocketHandler - Class in org.kepler.webview.server.handler
 
WorkflowWebSocketHandler(WebViewServer) - Constructor for class org.kepler.webview.server.handler.WorkflowWebSocketHandler
 
workingDirectory - Variable in class org.cipres.kepler.GUIRunCIPRes
The workfing directory of the external program is defined in this parameter.
workingDirectory - Variable in class org.cipres.kepler.JRunCIPRes
The workfing directory of the external program is defined in this parameter.
workspace() - Method in class ptolemy.kernel.util.NamedObj
Get the workspace.
Workspace - Class in ptolemy.kernel.util
An instance of Workspace is used for synchronization and version tracking of interdependent groups of objects.
Workspace() - Constructor for class ptolemy.kernel.util.Workspace
Create a workspace with an empty string as its name.
Workspace(String) - Constructor for class ptolemy.kernel.util.Workspace
Create a workspace with the specified name.
workspace - Variable in class ptolemy.moml.test.UnloadModelTest
The workspace in which the model and Manager are created.
WP_1 - Variable in class ptolemy.domains.pn.demo.QR.ND_3
 
WP_10 - Variable in class ptolemy.domains.pn.demo.QR.ND_3
 
WP_11 - Variable in class ptolemy.domains.pn.demo.QR.ND_3
 
WP_12 - Variable in class ptolemy.domains.pn.demo.QR.ND_4
 
WP_2 - Variable in class ptolemy.domains.pn.demo.QR.ND_1
 
WP_3 - Variable in class ptolemy.domains.pn.demo.QR.ND_4
 
WP_4 - Variable in class ptolemy.domains.pn.demo.QR.ND_2
 
WP_5 - Variable in class ptolemy.domains.pn.demo.QR.ND_4
 
WP_6 - Variable in class ptolemy.domains.pn.demo.QR.ND_1
 
WP_7 - Variable in class ptolemy.domains.pn.demo.QR.ND_4
 
WP_8 - Variable in class ptolemy.domains.pn.demo.QR.ND_2
 
WP_9 - Variable in class ptolemy.domains.pn.demo.QR.ND_4
 
WRAP - Static variable in class ptolemy.math.Overflow
Singleton implementing Modulo overflow strategy.
WRAPPING_UP - Static variable in class ptolemy.actor.Manager
Indicator that the execution is in the wrapup phase.
wrapup() - Method in class org.geon.BinaryFileReader
Close the reader if there is one.
wrapup() - Method in class org.geon.BinaryFileWriter
Close the writer if there is one.
wrapup() - Method in class org.geon.BrowserDisplay
set reFire to true.
wrapup() - Method in class org.geon.DatabaseAccessor
Close the connection if open.
wrapup() - Method in class org.geon.DatabaseQuery
 
wrapup() - Method in class org.geon.FileToArray
Close the reader if there is one.
wrapup() - Method in class org.geon.FileToString
Close the reader if there is one.
wrapup() - Method in class org.geon.Scp
Terminate any sessions.
wrapup() - Method in class org.kepler.actor.database.DatabaseTableCreator
Close the connection if open.
wrapup() - Method in class org.kepler.actor.Logger
Close all opened log files.
wrapup() - Method in class org.kepler.actor.MappedLogger
Close all opened log files.
wrapup() - Method in class org.kepler.actor.ssh.SshSession
Close all sessions.
wrapup() - Method in class org.kepler.data.datasource.dataone.DataOneActor
 
wrapup() - Method in class org.kepler.data.datasource.dataturbine.DataTurbine
 
wrapup() - Method in class org.kepler.data.datasource.dataturbine.DataTurbineWriter
Cleanup after execution or error.
wrapup() - Method in class org.kepler.data.netcdf.NetCDFReader
Close the NetCDF file.
wrapup() - Method in class org.kepler.data.netcdf.NetCDFWriter
Write the array to the file and close it.
wrapup() - Method in class org.kepler.ddp.actor.ExecutionChoice
Perform cleanup.
wrapup() - Method in class org.kepler.ddp.actor.ExecutionChoiceDirector
Remove all DDF directors that were added to refinements in preinitialize().
wrapup() - Method in class org.kepler.ddp.actor.pattern.DDPDataSink
Remove any tokens stored for this actor.
wrapup() - Method in class org.kepler.ddp.actor.pattern.DDPDataSource
Remove any token stored for this actor.
wrapup() - Method in class org.kepler.ddp.director.DDPDirector
Perform any cleanup in the engine.
wrapup() - Method in class org.kepler.ddp.director.DDPEngine
Perform cleanup.
wrapup() - Method in class org.kepler.gis.actor.io.RasterReader
 
wrapup() - Method in class org.kepler.gis.actor.io.VectorReader
 
wrapup() - Method in class org.kepler.gis.actor.landscape.CreateLandscape
 
wrapup() - Method in class org.kepler.gis.actor.VectorCombineFiles
 
wrapup() - Method in class org.kepler.hadoop.actor.HDFSLoader
Close the writer if there is one.
wrapup() - Method in class org.kepler.hadoop.actor.HDFSRemover
Close the file system if there is one.
wrapup() - Method in class org.kepler.hadoop.actor.HDFSUnLoader
Close the writer if there is one.
wrapup() - Method in class org.kepler.hadoop.actor.HDFSWriter
Close the writer if there is one.
wrapup() - Method in class org.kepler.hadoop.director.HadoopEngine
Free resources.
wrapup() - Method in class org.kepler.metadata.MetadataParser
 
wrapup() - Method in class org.kepler.monitor.MonitorManager
Finishes the monitors.
wrapup() - Method in class org.kepler.monitor.test.ActorWithProgressBar
Stops the progress bar.
wrapup() - Method in class org.kepler.monitor.test.ActorWithTrafficLight
Stops the figure.
wrapup() - Method in class org.kepler.provenance.ProvenanceRecorder
Perform clean up.
wrapup() - Method in class org.kepler.reporting.ReportingListener
 
wrapup() - Method in class org.kepler.scriptengine.ScriptEngineActor
Invoke the wrapup() method in the script.
wrapup() - Method in class org.kepler.spark.actor.SparkBaseActor
Free resources.
wrapup() - Method in class org.kepler.spark.mllib.GetLiveMeasurements
Close the websocket connection when the workflow ends.
wrapup() - Method in class org.kepler.spark.mllib.KMeansClustering
 
wrapup() - Method in class org.kepler.spark.mllib.SantaAnaIdentify
 
wrapup() - Method in class org.kepler.spark.mllib.Standardize
 
wrapup() - Method in class org.kepler.stratosphere.director.StratosphereEngine
Free resources.
wrapup() - Method in class org.kepler.webview.actor.WebViewAttribute
 
wrapup() - Method in class org.sdm.spa.BrowserUI
Wrapup the actor.
wrapup() - Method in class org.sdm.spa.CommandLineExec
Terminate the subprocess.
wrapup() - Method in class org.sdm.spa.gui.UserInteractiveShell
Override the base class to make the shell uneditable.
wrapup() - Method in class org.sdm.spa.Pause
Dispose the frame of the button dialog.
wrapup() - Method in class org.sdm.spa.Ssh2Exec
Terminate any sessions.
wrapup() - Method in class org.sdm.spa.TextualInteractionShell
Override the base class to make the shell uneditable.
wrapup() - Method in class org.srb.DataGridTransfer
Reset the _refire variable and disconnect
wrapup() - Method in class org.srb.SGet
Reset the _refire variable and disconnect
wrapup() - Method in class org.srb.SGetPhysicalLocation
Disconnect from SRB.
wrapup() - Method in class org.srb.SProxy
Disconnect from SRB.
wrapup() - Method in class org.srb.SPut
Disconnect from SRB.
wrapup() - Method in class org.srb.SRBAddMD
Disconnect from SRB.
wrapup() - Method in class org.srb.SRBConnect
Disconnect from SRB.
wrapup() - Method in class org.srb.SRBCreateQueryInterface
Disconnect from SRB.
wrapup() - Method in class org.srb.SRBGetMD
Disconnect from SRB.
wrapup() - Method in class org.srb.SRBProxyCommand
Disconnect from SRB.
wrapup() - Method in class org.srb.SRBQueryMD
Disconnect from SRB.
wrapup() - Method in class org.srb.SRBReader
Disconnect from SRB.
wrapup() - Method in class org.srb.SRBWriter
Disconnect from SRB.
wrapup() - Method in class ptolemy.actor.AbstractInitializableAttribute
Invoke wrapup() on registered initializables.
wrapup() - Method in class ptolemy.actor.AtomicActor
Do nothing except invoke the wrapup() methods of any objects that have been registered with addInitializable().
wrapup() - Method in class ptolemy.actor.CompositeActor
If this actor is opaque, then invoke the wrapup() method of the local director.
wrapup() - Method in class ptolemy.actor.Director
Invoke the wrapup() method of all the actors contained in the director's container.
wrapup() - Method in interface ptolemy.actor.Initializable
This method is invoked exactly once per execution of an application.
wrapup() - Method in class ptolemy.actor.lib.ArrayRemoveElement
Clear port parameter value.
wrapup() - Method in class ptolemy.actor.lib.Clock
Deprecated.
Override the base class to indicate that the actor has not been initialized.
wrapup() - Method in class ptolemy.actor.lib.conversions.ExpressionToToken
Wrapup execution of this actor.
wrapup() - Method in class ptolemy.actor.lib.Dictionary
If a file has been specified and updateFile is true, then save the current state of the dictionary in the file.
wrapup() - Method in class ptolemy.actor.lib.ExceptionManager
Invoke wrapup() on registered initializables.
wrapup() - Method in class ptolemy.actor.lib.Exec
Terminate the subprocess.
wrapup() - Method in class ptolemy.actor.lib.Exit
Exit the Java process by calling System.exit() after all the wrapup() methods have been called.
wrapup() - Method in class ptolemy.actor.lib.FileWriter
Close the file, if there is one.
wrapup() - Method in class ptolemy.actor.lib.gui.ArrayPlotter
Update the plot with the most recently read data.
wrapup() - Method in class ptolemy.actor.lib.gui.ArrayPlotterXY
Update the plot with the most recently read data.
wrapup() - Method in class ptolemy.actor.lib.gui.ArrowKeySensor
Dispose of the JFrame, causing the window to vanish.
wrapup() - Method in class ptolemy.actor.lib.gui.EventButton
Mark that the model is no longer executing.
wrapup() - Method in class ptolemy.actor.lib.gui.InteractiveShell
Override the base class to make the shell uneditable.
wrapup() - Method in class ptolemy.actor.lib.gui.PlotterBase
If the fillOnWrapup parameter is true, rescale the plot so that all the data is visible.
wrapup() - Method in class ptolemy.actor.lib.hoc.ApplyFilterOverArray
Report an exception if it occurred in a background run.
wrapup() - Method in class ptolemy.actor.lib.hoc.ExecuteCompositeActor
Override the base class to do nothing.
wrapup() - Method in class ptolemy.actor.lib.hoc.MobileModel
Clean up tha changes that have been made.
wrapup() - Method in class ptolemy.actor.lib.hoc.ModelReference
Report an exception if it occurred in a background run.
wrapup() - Method in class ptolemy.actor.lib.hoc.RunCompositeActor
Override the base class to do nothing.
wrapup() - Method in class ptolemy.actor.lib.hoc.test.PreinitializeMustBeInvoked
 
wrapup() - Method in class ptolemy.actor.lib.io.CSVReader
Wrapup execution of this actor.
wrapup() - Method in class ptolemy.actor.lib.io.ExpressionReader
Deprecated.
Override the base class to clear memory of any possibly erroneous expression.
wrapup() - Method in class ptolemy.actor.lib.io.LineReader
Close the reader if there is one.
wrapup() - Method in class ptolemy.actor.lib.io.LineWriter
Close the writer if there is one.
wrapup() - Method in class ptolemy.actor.lib.NonStrictTest
If trainingMode is true, then take the collected training tokens and store them as an array in correctValues.
wrapup() - Method in class ptolemy.actor.lib.PoissonClock
Override the base class to reset a flag that indicates that the model is executing.
wrapup() - Method in class ptolemy.actor.lib.PublisherNonStrictTest
If trainingMode is true, then take the collected training tokens and store them as an array in correctValues.
wrapup() - Method in class ptolemy.actor.lib.python.PythonScript
Invoke the wrapup() method if defined in the script.
wrapup() - Method in class ptolemy.actor.lib.Reader
Deprecated.
Close the reader if there is one.
wrapup() - Method in class ptolemy.actor.lib.TestExceptionAttribute
Call the super.wrapup() method.
wrapup() - Method in class ptolemy.actor.lib.TestExceptionHandler
Deprecated.
Call the super.wrapup() method.
wrapup() - Method in class ptolemy.actor.lib.TimedSource
Override the base class to reset a flag that indicates that the model is executing.
wrapup() - Method in class ptolemy.actor.lib.URLReader
Close the reader if there is one.
wrapup() - Method in class ptolemy.actor.lib.Writer
Deprecated.
Flush the writer, if there is one.
wrapup() - Method in class ptolemy.actor.Manager
Wrap up the model by invoking the wrapup method of the toplevel composite actor.
wrapup() - Method in class ptolemy.actor.parameters.ParameterSet
Check to see whether the specified file has changed, and if so, re-read it, and invoke the wrapup() methods of objects that have been added using addInitializable().
wrapup() - Method in class ptolemy.actor.parameters.SharedParameter
Supress propagation.
wrapup() - Method in class ptolemy.actor.process.CompositeProcessDirector
End the execution of the model under the control of this director.
wrapup() - Method in class ptolemy.actor.process.ProcessDirector
End the execution of the model under the control of this director.
wrapup() - Method in class ptolemy.actor.process.ProcessThread
End the execution of the actor under the control of this thread.
wrapup() - Method in class ptolemy.actor.PubSubPort
Do nothing.
wrapup() - Method in class ptolemy.actor.test.TestActor
Record the invocation.
wrapup() - Method in class ptolemy.actor.test.TypedTestActor
Record the invocation.
wrapup() - Method in class ptolemy.component.AtomicComponent
Wrap up an execution, which in this base class means doing nothing and returning immediately.
wrapup() - Method in interface ptolemy.component.Component
Wrap up an execution.
wrapup() - Method in class ptolemy.component.ComponentActor
 
wrapup() - Method in class ptolemy.component.ComponentDirector
Wrap up an execution.
wrapup() - Method in class ptolemy.component.domains.ptinyos.PtinyOSDirector
Wrap up an execution.
wrapup() - Method in class ptolemy.data.expr.AbstractInitializableParameter
Invoke wrapup() on registered initializables.
wrapup() - Method in class ptolemy.domains.continuous.lib.ContinuousTransferFunction
Set the opaqueness to true and wrapup.
wrapup() - Method in class ptolemy.domains.continuous.lib.LinearStateSpace
Set the opaqueness back to true and call the wrapup() method of the super class.
wrapup() - Method in class ptolemy.domains.de.kernel.DEDirector
Invoke the wrapup method of the super class.
wrapup() - Method in class ptolemy.domains.de.lib.MostRecent
Wrapup and reset variables.
wrapup() - Method in class ptolemy.domains.de.lib.Previous
Reset the state variables.
wrapup() - Method in class ptolemy.domains.de.lib.Queue
Clear the queue tokens.
wrapup() - Method in class ptolemy.domains.de.lib.Server
Clear the queue so that the capacity can be changed.
wrapup() - Method in class ptolemy.domains.de.lib.SharedQueue
Clear the buffer.
wrapup() - Method in class ptolemy.domains.modal.kernel.FSMActor
Do nothing except invoke the wrapup method of any objects that have been added using addInitializable().
wrapup() - Method in class ptolemy.domains.pn.kernel.TimedPNDirector
Reset private variables.
wrapup() - Method in class ptolemy.domains.sdf.kernel.test.SDFTestDelay
This method should be invoked exactly once per execution of an application.
wrapup() - Method in class ptolemy.domains.sdf.lib.BootstrapSampleDelay
Reset the state for the next run.
wrapup() - Method in class ptolemy.matlab.Expression
Close matlab engine if it was open.
write(Writer) - Method in class org.json.JSONArray
Write the contents of the JSONArray as JSON text to a writer.
write(Writer) - Method in class org.json.JSONObject
Write the contents of the JSONObject as JSON text to a writer.
write(DataOutput) - Method in class org.kepler.hadoop.io.input.TokenInputSplit
Serialize the fields in this split.
write(Writable, Writable) - Method in class org.kepler.hadoop.io.output.TokenRecordWriter
Write a key and value.
write(K, V) - Method in class org.kepler.hadoop.io.output.ValueOnlyOutputWriter
 
write(DataOutput) - Method in class org.kepler.hadoop.io.TaggedBytesWritable
 
write(DataOutput) - Method in class org.kepler.hadoop.io.TaggedDoubleWritable
 
write(DataOutput) - Method in class org.kepler.hadoop.io.TaggedIntWritable
 
write(DataOutput) - Method in class org.kepler.hadoop.io.TaggedLongWritable
 
write(DataOutput) - Method in class org.kepler.hadoop.io.TaggedNullWritable
 
write(DataOutput) - Method in class org.kepler.hadoop.io.TaggedObjectWritable
 
write(DataOutput) - Method in class org.kepler.hadoop.io.TaggedText
 
write(DataOutput) - Method in class org.kepler.hadoop.io.TokenWritable
 
write() - Method in class org.kepler.sms.NamedOntModel
 
write() - Method in class org.kepler.sms.OntologyCatalog
 
write(DataOutput) - Method in class org.kepler.stratosphere.io.input.TokenInputSplit
Write the token to the output stream.
write(DataOutput) - Method in class org.kepler.stratosphere.type.ByteArray
Write the byte array to the given data output stream.
write(int) - Method in class ptolemy.actor.gui.Console.ConsoleFrame.MyByteArrayOutputStream
 
write(byte[], int, int) - Method in class ptolemy.actor.gui.Console.ConsoleFrame.MyByteArrayOutputStream
 
write(DataOutputStream) - Method in class ptolemy.media.Audio
Write the audio data to an output stream in the Sun audio format.
write(Writer, String) - Method in class ptolemy.plot.Histogram
Write the current data and plot configuration to the specified stream in PlotML syntax.
write(OutputStream) - Method in class ptolemy.plot.PlotBox
Write the current data and plot configuration to the specified stream in PlotML syntax.
write(OutputStream, String) - Method in class ptolemy.plot.PlotBox
Write the current data and plot configuration to the specified stream in PlotML syntax.
write(Writer, String) - Method in class ptolemy.plot.PlotBox
Write the current data and plot configuration to the specified stream in PlotML syntax.
write(OutputStream) - Method in interface ptolemy.plot.PlotBoxInterface
Write the current data and plot configuration to the specified stream in PlotML syntax.
write(OutputStream, String) - Method in interface ptolemy.plot.PlotBoxInterface
Write the current data and plot configuration to the specified stream in PlotML syntax.
write(Writer, String) - Method in interface ptolemy.plot.PlotBoxInterface
Write the current data and plot configuration to the specified stream in PlotML syntax.
WRITE_BLOCKED - Static variable in class ptolemy.domains.pn.kernel.PNDirector
Indicator that a thread is write blocked.
writeAudio(double[], DataOutputStream) - Static method in class ptolemy.media.Audio
Write Sun audio file (.au) format from an array.
writeConfiguration(RootConfigurationProperty) - Method in interface org.kepler.configuration.ConfigurationWriter
write (serialize) a given configuration property
writeConfiguration(RootConfigurationProperty) - Method in class org.kepler.configuration.GeneralConfigurationWriter
write (serialize) a given configuration property
writeData(PrintWriter) - Method in class ptolemy.plot.Histogram
Write plot data information to the specified output stream in PlotML.
writeData(PrintWriter) - Method in class ptolemy.plot.Plot
Write plot data information to the specified output stream in PlotML.
writeData(PrintWriter) - Method in class ptolemy.plot.PlotBox
Write plot data information to the specified output stream in PlotML.
writeData(PrintWriter) - Method in interface ptolemy.plot.PlotBoxInterface
Write plot data information to the specified output stream in PlotML.
writeData(PrintWriter) - Method in interface ptolemy.plot.PlotInterface
Write plot data information to the specified output stream in PlotML.
writeDefaultModel() - Method in class org.ecoinformatics.seek.sms.OntologyCatalog
Description of the Method
writeDefaultModel() - Method in class org.kepler.sms.OntologyCatalog
Description of the Method
writeDemoURLs(String, String) - Static method in class ptolemy.actor.gui.HTMLAbout
Write the urls of the demo urls.
writeExternal(ObjectOutput) - Method in class org.kepler.objectmanager.cache.ActorCacheObject
serialize this class
writeExternal(ObjectOutput) - Method in class org.kepler.objectmanager.cache.RawDataCacheObject
serialize this object
writeExternal(ObjectOutput) - Method in class org.kepler.objectmanager.cache.WorkflowRunCacheObject
 
writeExternal(ObjectOutput) - Method in class org.kepler.spark.stub.PairFlatMapFunctionBase
Serialize the configuration.
writeFile(File) - Method in class org.kepler.gui.kar.KAREffigy
Write the model associated with this effigy.
writeFile(File) - Method in class ptolemy.actor.gui.Effigy
Write the model associated with this effigy to the specified file.
writeFile(File) - Method in class ptolemy.actor.gui.ImageTokenEffigy
Write the current data of this effigy to the specified file.
writeFile(File) - Method in class ptolemy.actor.gui.PlotEffigy
Write the text of the plot to the specified file.
writeFile(File) - Method in class ptolemy.actor.gui.PtolemyEffigy
Write the model associated with this effigy to the specified file in MoML format.
writeFile(File) - Method in class ptolemy.actor.gui.TextEffigy
Write the text of the document to the specified file.
writeFile(File) - Method in class ptolemy.actor.gui.TokenEffigy
Write the current data of this effigy to the specified file.
writeFilesToKAR() - Method in class org.kepler.reporting.ReportingListener
 
writeFilesToProvenance() - Method in class org.kepler.reporting.ReportingListener
 
writeFormat(PrintWriter) - Method in class ptolemy.plot.Histogram
Write plot format information to the specified output stream.
writeFormat(PrintWriter) - Method in class ptolemy.plot.Plot
Write plot format information to the specified output stream in PlotML, an XML scheme.
writeFormat(PrintWriter) - Method in class ptolemy.plot.PlotBox
Write plot format information to the specified output stream in PlotML.
writeFormat(PrintWriter) - Method in interface ptolemy.plot.PlotBoxInterface
Write plot format information to the specified output stream in PlotML.
writeFormat(PrintWriter) - Method in interface ptolemy.plot.PlotInterface
Write plot format information to the specified output stream in PlotML, an XML scheme.
writeHTML(ExportParameters, Writer) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Write an HTML page based on the current view of the model to the specified destination directory.
writeHTML(ExportParameters, Writer) - Method in class ptolemy.vergil.basic.export.html.ExportHTMLAction
Write an HTML page based on the current view of the model to the specified destination directory.
writeHTML(ExportParameters, Writer) - Method in interface ptolemy.vergil.basic.HTMLExportable
Export to HTML as given by the parameters.
writeId - Variable in class org.kepler.provenance.sql.SQLRecordingV8.TokenInfo
The port event write id.
writeImage(OutputStream, String) - Method in class ptolemy.actor.gui.PlotTableauFrame
Write an image to the specified output stream in the specified format.
writeImage(OutputStream, String) - Method in class ptolemy.actor.gui.TextEditor
Write an image to the specified output stream in the specified format.
writeImage(OutputStream, String) - Method in interface ptolemy.gui.ImageExportable
Write an image to the specified output stream in the specified format.
writeImage(OutputStream, String) - Method in class ptolemy.plot.PlotFrame
Write an image to the specified output stream in the specified format.
writeImage(OutputStream, String) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Write an image to the specified output stream in the specified format.
writeImage(OutputStream, String, Color) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Write an image to the specified output stream in the specified format with the specified background color.
writeInputStreamToOutputStream(InputStream, OutputStream) - Static method in class org.kepler.objectmanager.cache.CacheUtil
reads bytes from in InputStream and writes them to an OutputStream.
writeKey - Variable in class ptolemy.actor.lib.Dictionary
An input that provides a key for a key-value pair to be stored in the dictionary.
writeLiveLinks(FileWriter, String, String) - Static method in class ptolemy.actor.gui.HTMLAbout
Open the model, look for any LiveLinks and write their names.
writeMatrix(String) - Method in class ptolemy.domains.pn.demo.QR.ArrayIndex
Write the matrix stored in the associate array with a given name.
writeMoMLDescription(Writer, int) - Method in class ptolemy.moml.MoMLAttribute
Write the MoML description of this object, which consists of whatever has been specified using the appendMoMLDescription() method.
writeOldSyntax(OutputStream) - Method in class ptolemy.plot.PlotBox
Deprecated. 
writeOldSyntax(OutputStream) - Method in interface ptolemy.plot.PlotBoxInterface
Deprecated. 
writeOnFinish - Variable in class org.kepler.data.netcdf.NetCDFWriter
If true, wait until the workflow is finished before writing data to the NetCDF file.
writeOutput() - Method in class org.kepler.spark.operator.DataSink
Write the output to the file.
writeOutStackTrace() - Method in class org.kepler.sms.SemanticType
 
writeProv(String, String, Integer) - Static method in class org.kepler.provenance.prov.ProvUtilities
Write PROV to a file.
writeProv(OutputStream, String, Integer) - Static method in class org.kepler.provenance.prov.ProvUtilities
Write PROV to an output stream.
writeProv(String, InteropFramework.ProvFormat, Integer) - Static method in class org.kepler.provenance.prov.ProvUtilities
Write PROV to a file.
writeProv(OutputStream, InteropFramework.ProvFormat, Integer) - Static method in class org.kepler.provenance.prov.ProvUtilities
Write PROV to an output stream.
writer - Variable in class org.json.JSONWriter
The writer that will receive the output.
Writer - Class in ptolemy.actor.lib
Deprecated.
FileWriter actor replaces this.
Writer(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.Writer
Deprecated.
Construct an actor with the given container and name.
writeRaw(DataOutputStream) - Method in class ptolemy.media.Audio
Write the raw audio data to an output stream.
writeReaderToWriter(Reader, Writer) - Static method in class org.kepler.objectmanager.cache.CacheUtil
writes the bytes in the reader to the writer.
writeRecord(Record) - Method in class org.kepler.stratosphere.io.output.NullOutputFormat
 
writeRecord(Record) - Method in class org.kepler.stratosphere.io.output.StringOutputFormat
 
writeRecord(Record) - Method in class org.kepler.stratosphere.io.output.TokenOutputFormat
Adds a record to the output.
writeRecord(Record) - Method in class org.kepler.stratosphere.io.output.ValueOnlyOutputFormat
 
writeServices() - Method in class org.ecoinformatics.seek.ecogrid.EcoGridServicesController
 
writeStringForSuite(String) - Static method in class org.kepler.modulemanager.gui.ModuleManagerGuiUtil
 
writeSubWorkflowsToFiles - Variable in class org.kepler.ddp.director.DDPDirector
If true, sub-workflows are written to files in a directory.
WriteTimestampToKML - Class in org.kepler.gis.actor.kml
Add a timestamp to a KML file.
WriteTimestampToKML(CompositeEntity, String) - Constructor for class org.kepler.gis.actor.kml.WriteTimestampToKML
 
writeToBuffer(Buffer) - Method in class org.kepler.webview.server.auth.NoneUser
 
WRM_FONT - Static variable in class org.kepler.workflowrunmanager.WRMDefaults
 
WRM_FONT_SIZE - Static variable in class org.kepler.workflowrunmanager.WRMDefaults
 
WRM_PANE_HEIGHT - Static variable in class org.kepler.workflowrunmanager.WRMDefaults
 
WRM_PANE_WIDTH - Static variable in class org.kepler.workflowrunmanager.WRMDefaults
 
WRM_ROW_HEIGHT - Static variable in class org.kepler.workflowrunmanager.WRMDefaults
 
WRMDefaults - Class in org.kepler.workflowrunmanager
 
WRMDefaultTableCellRenderer - Class in org.kepler.workflowrunmanager.gui
 
WRMDefaultTableCellRenderer() - Constructor for class org.kepler.workflowrunmanager.gui.WRMDefaultTableCellRenderer
 
wrmQuery(String, String, String, String, String, String) - Method in class org.kepler.workflowrunmanager.WorkflowRunManager
Query provenance and create and return WorkflowRuns that match given query terms.
WS_PATH - Static variable in class org.kepler.webview.server.WebViewServer
 
WS_RUNWF_PATH - Static variable in class org.kepler.webview.server.WebViewServer
 
wsdl - Variable in class org.sdm.spa.WSWithComplexTypes
The web service WSDL address.
wsdlUrl - Variable in class org.sdm.spa.MessageBasedWebService
Deprecated.
The parameter for the URL of the web service WSDL.
wsdlUrl - Variable in class org.sdm.spa.SoaplabChooseOperation
The web service URL which is registered at EBI
wsdlUrl - Variable in class org.sdm.spa.SoaplabChooseResultType
The web service URL which is registered at EBI
wsdlUrl - Variable in class org.sdm.spa.SoaplabServiceStarter
The web service URL which is registered at EBI
wsdlUrl - Variable in class org.sdm.spa.WebService
The parameter for the URL of the web service WSDL.
wsdlUrl - Variable in class org.sdm.spa.WebServiceStub
Deprecated.
 
WSWithComplexTypes - Class in org.sdm.spa
This actor executes SOAP web services defined by WSDLs.
WSWithComplexTypes(CompositeEntity, String) - Constructor for class org.sdm.spa.WSWithComplexTypes
Construct a WSWithComplexTypes source with the given container and name.

X

x - Variable in class ptolemy.actor.lib.ArrayElementAsMatrix
The x index into the input array.
x - Variable in class ptolemy.actor.lib.conversions.CartesianToComplex
The input port for the x coordinate of the Cartesian pair, which has type DoubleToken.
x - Variable in class ptolemy.actor.lib.conversions.CartesianToPolar
The x coordinate of the input pair, which has type DoubleToken.
x - Variable in class ptolemy.actor.lib.conversions.ComplexToCartesian
The output port for x coordinate, which has type DoubleToken.
x - Variable in class ptolemy.actor.lib.conversions.PolarToCartesian
The output port for the x coordinate, which has type DoubleToken.
x - Variable in class ptolemy.actor.lib.gui.ArrayPlotterXY
Input port for the horizontal axis, which receives an array of doubles.
x - Variable in class ptolemy.plot.PlotPoint
X value after wrapping (if any).
x - Variable in class ptolemy.vergil.kernel.attributes.LineAttribute
The horizontal extent.
xAxisMode - Variable in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Parameter specifying how to parse the X axis value.
xAxisTitle - Variable in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Parameter specifying the title of the X axis.
xInit - Variable in class ptolemy.actor.lib.gui.ArrayPlotter
The start point of the X axis.
xInit - Variable in class ptolemy.actor.lib.gui.SequencePlotter
The start point of the X axis.
xllcorner - Variable in class org.ecoinformatics.seek.gis.java_gis.CVHull2Raster
x-value of the lower left corner of the grid to be created.
xllcorner - Variable in class org.ecoinformatics.seek.gis.java_gis.Grid
 
xllcorner - Variable in class org.ecoinformatics.seek.gis.java_gis.GridRescaler
The x-value of the lower left corner of the output grid Usually this is a longitude.
xLocation - Variable in class org.ecoinformatics.seek.gis.java_gis.AscGridValue
'xLocation' is the xLocation (longitude) where the value is to be calculated
xmax - Variable in class com.numericsolutions.geomodeltools.DensityGridActor
 
xmax - Variable in class org.ecoinformatics.seek.gis.grass.GISRasterActor
 
xMean - Variable in class ptolemy.actor.lib.Rician
The mean of the random number along the X-axis.
xmin - Variable in class com.numericsolutions.geomodeltools.DensityGridActor
 
xmin - Variable in class org.ecoinformatics.seek.gis.grass.GISRasterActor
 
XML - Class in org.json
This provides static methods to convert an XML text into a JSONObject, and to covert a JSONObject into an XML text.
XML() - Constructor for class org.json.XML
 
XML_METADATA - Static variable in class org.kepler.objectmanager.lsid.KeplerLSID
 
XmlApp - Class in com.microstar.xml.demo
Base class for Ælfred demonstration applications.
XmlApp() - Constructor for class com.microstar.xml.demo.XmlApp
 
XmlApplet - Class in com.microstar.xml.demo
Base class for Ælfred demonstration applications.
XmlApplet() - Constructor for class com.microstar.xml.demo.XmlApplet
 
XMLAssembler - Class in org.sdm.spa
On each firing, read one token from each input port and assemble them into an XML document where the root element name is specified by the output port name.
XMLAssembler(CompositeEntity, String) - Constructor for class org.sdm.spa.XMLAssembler
Construct a XMLAssembler source with the given container and name.
xmlConditions - Variable in class org.srb.SRBCreateQueryConditions
The xml conditions obtained from user selection.
XMLDisassembler - Class in org.sdm.spa
This actor disassembles an XML document into its child elements.
XMLDisassembler(CompositeEntity, String) - Constructor for class org.sdm.spa.XMLDisassembler
Construct a XMLDisassembler source with the given container and name.
XmlException - Exception in com.microstar.xml
Convenience exception class for reporting XML parsing errors.
XmlException(String, String) - Constructor for exception com.microstar.xml.XmlException
Construct a new XML parsing exception.
XmlException(String, String, int, int) - Constructor for exception com.microstar.xml.XmlException
Construct a new XML parsing exception.
XmlException(String, String, int, int, Throwable) - Constructor for exception com.microstar.xml.XmlException
Construct a new XML parsing exception.
XmlHandler - Interface in com.microstar.xml
XML Processing Interface.
XMLHelper - Class in org.sdm.spa
This splits an XML document into its child elements and each is sent to the output port with the same name.
XMLHelper(AtomicActor) - Constructor for class org.sdm.spa.XMLHelper
Initialize helper classes.
XMLIcon - Class in ptolemy.vergil.icon
An icon is a visual representation of an entity.
XMLIcon(Workspace, String) - Constructor for class ptolemy.vergil.icon.XMLIcon
Construct an icon in the specified workspace and name.
XMLIcon(NamedObj, String) - Constructor for class ptolemy.vergil.icon.XMLIcon
Create a new icon with the given name in the given container.
xmlIn - Variable in class org.sdm.spa.XSLTActor
String representation of the XML or HTMl input stream that needs to be transformed.
XMLInclusion - Class in ptolemy.actor.lib.xslt
Combine multiple XMLTokens into one XMLToken.
XMLInclusion(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.xslt.XMLInclusion
Construct an actor with the given container and name.
xmlOutput - Variable in class org.sdm.spa.BrowserUI
An xml name, value pair user response output.
XmlParser - Class in com.microstar.xml
Parse XML documents and return parse events through call-backs.
XmlParser() - Constructor for class com.microstar.xml.XmlParser
Construct a new parser with no associated handler.
XMLParser - Class in ptolemy.data.expr
This class parses a XML string token to a DOM document.
XMLParser() - Constructor for class ptolemy.data.expr.XMLParser
 
XMLParser.EntityResolver - Class in ptolemy.data.expr
The entity resolver that tries to first load a DTD file locally, and if it is not found, looks for it on the Internet using the DTD file's system ID.
XMLRecording - Class in org.kepler.provenance
Deprecated.
This no longer works. For XML output, use ProvRecording.
XMLRecording() - Constructor for class org.kepler.provenance.XMLRecording
Deprecated.
 
XMLRecording.XMLRecordingParameters - Class in org.kepler.provenance
Deprecated.
 
xmlResults - Variable in class ptolemy.actor.lib.test.LoopTest2
 
XMLToADN - Class in org.geon
This actor converts XML name-value pairs to ADN schema
XMLToADN(CompositeEntity, String) - Constructor for class org.geon.XMLToADN
Construct an actor with the given container and name.
XMLTOKEN - Static variable in class ptolemy.data.type.BaseType
The XmlToken data type.
XMLToken - Class in ptolemy.data
A token that contains a xml document.
XMLToken() - Constructor for class ptolemy.data.XMLToken
Construct an empty token.
XMLToken(String) - Constructor for class ptolemy.data.XMLToken
Construct an XmlToken from the specified string.
XMLTokener - Class in org.json
The XMLTokener extends the JSONTokener to provide additional methods for the parsing of XML texts.
XMLTokener(String) - Constructor for class org.json.XMLTokener
Construct an XMLTokener from a string.
XMLUIP - Class in org.sdm.spa.gui
 
XMLUIP() - Constructor for class org.sdm.spa.gui.XMLUIP
 
XMLUIP.AdapterNode - Class in org.sdm.spa.gui
 
XMLUIP.DomToTreeModelAdapter - Class in org.sdm.spa.gui
 
XMLUpdater - Class in org.sdm.spa
On each firing, read an XML token from port input, one token from each additional input port, and output the original XML updated with new values.
XMLUpdater(CompositeEntity, String) - Constructor for class org.sdm.spa.XMLUpdater
Construct an XMLUpdater source with the given container and name.
XMLUtil - Class in org.sdm.spa
 
XMLUtil() - Constructor for class org.sdm.spa.XMLUtil
Constructor for XMLUtil.
XMLViewer - Class in org.kepler.actor.gui
An actor that displays XML tokens in a nice format.
XMLViewer(CompositeEntity, String) - Constructor for class org.kepler.actor.gui.XMLViewer
Construct a new XMLViewer in a container with a specific name.
xOffset - Variable in class ptolemy.actor.lib.ArrayElementAsMatrix
The xOffset offset into the input array.
xor(BooleanToken) - Method in class ptolemy.data.BooleanToken
Return a new token whose value is the logical XOR of the value of this token and the the value of the argument token.
XOR - Static variable in interface ptolemy.data.expr.PtParserConstants
RegularExpression Id.
xpath - Variable in class org.sdm.spa.EnumItemTriggered
The value produced by this constant source.
XPath - Class in org.sdm.spa
XPath selects XML nodes based on the XPath syntax.
XPath(CompositeEntity, String) - Constructor for class org.sdm.spa.XPath
Construct an XPath actor with the given container and name.
xslFileName - Variable in class org.sdm.spa.XSLTActor
This parameter is to provide the path for the xsl file in user's computer.
XSLTActor - Class in org.sdm.spa
Given an XSL transformation file, performs the specified transformation on the input XML doc.
XSLTActor(CompositeEntity, String) - Constructor for class org.sdm.spa.XSLTActor
 
XSLTransformer - Class in ptolemy.actor.lib.xslt
This actor reads an XSLT file and apply it to a dom tree.
XSLTransformer(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.xslt.XSLTransformer
Construct an actor with the given container and name.
XSLTUtilities - Class in ptolemy.util
A collection of utilities for manipulating strings using XSLT.
xSpace - Variable in class org.geon.Interpolate
Spacing between the grid cells
xUnit - Variable in class ptolemy.actor.lib.gui.ArrayPlotter
The increment of the X axis.
xUnit - Variable in class ptolemy.actor.lib.gui.SequencePlotter
The increment of the X axis.
xy(int, int) - Method in class com.jgoodies.forms.layout.CellConstraints
Sets row and column origins; sets width and height to 1; uses the default alignments.
xy(int, int, String) - Method in class com.jgoodies.forms.layout.CellConstraints
Sets row and column origins; sets width and height to 1; decodes horizontal and vertical alignments from the given string.
xy(int, int, CellConstraints.Alignment, CellConstraints.Alignment) - Method in class com.jgoodies.forms.layout.CellConstraints
Sets the row and column origins; sets width and height to 1; set horizontal and vertical alignment using the specified objects.
XYPlotter - Class in ptolemy.actor.lib.gui
An XY plotter.
XYPlotter(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.gui.XYPlotter
Construct an actor with the given container and name.
XYScope - Class in ptolemy.actor.lib.gui
An X-Y plotter that plots with finite persistence.
XYScope(CompositeEntity, String) - Constructor for class ptolemy.actor.lib.gui.XYScope
Construct an actor with the given container and name.
xyw(int, int, int) - Method in class com.jgoodies.forms.layout.CellConstraints
Sets the row, column, width, and height; uses a height (row span) of 1 and the horizontal and vertical default alignments.
xyw(int, int, int, String) - Method in class com.jgoodies.forms.layout.CellConstraints
Sets the row, column, width, and height; decodes the horizontal and vertical alignments from the given string.
xyw(int, int, int, CellConstraints.Alignment, CellConstraints.Alignment) - Method in class com.jgoodies.forms.layout.CellConstraints
Sets the row, column, width, and height; sets the horizontal and vertical alignment using the specified alignment objects.
xywh(int, int, int, int) - Method in class com.jgoodies.forms.layout.CellConstraints
Sets the row, column, width, and height; uses default alignments.
xywh(int, int, int, int, String) - Method in class com.jgoodies.forms.layout.CellConstraints
Sets the row, column, width, and height; decodes the horizontal and vertical alignments from the given string.
xywh(int, int, int, int, CellConstraints.Alignment, CellConstraints.Alignment) - Method in class com.jgoodies.forms.layout.CellConstraints
Sets the row, column, width, and height; sets the horizontal and vertical alignment using the specified alignment objects.

Y

y - Variable in class ptolemy.actor.lib.ArrayElementAsMatrix
The y index into the input array.
y - Variable in class ptolemy.actor.lib.conversions.CartesianToComplex
The input port for the y coordinate of the Cartesian pair, which has type DoubleToken.
y - Variable in class ptolemy.actor.lib.conversions.CartesianToPolar
The y coordinate of the input pair, which has type DoubleToken.
y - Variable in class ptolemy.actor.lib.conversions.ComplexToCartesian
The output port for the imaginary coordinate, which has type DoubleToken.
y - Variable in class ptolemy.actor.lib.conversions.PolarToCartesian
The output port for the y coordinate, which has type DoubleToken.
y - Variable in class ptolemy.actor.lib.gui.ArrayPlotterXY
Input port for the vertical axis, which receives an array of doubles.
y - Variable in class ptolemy.plot.PlotPoint
Y value.
y - Variable in class ptolemy.vergil.kernel.attributes.LineAttribute
The y extent.
YARN_RM_ADDRESS - Static variable in class org.kepler.hadoop.director.HadoopEngine
 
YARN_SITE - Static variable in class org.kepler.hadoop.director.HadoopEngine
 
yAxisMode - Variable in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Parameter specifying how to parse the Y axis value.
yAxisTitle - Variable in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Parameter specifying the title of the Y axis.
yBottom - Variable in class ptolemy.actor.lib.gui.SketchedSource
The bottom of the Y range.
year - Variable in class ptolemy.actor.lib.DateConstructor
The year.
year - Variable in class ptolemy.actor.lib.DateElements
Year of date received on input.
YELLOW - Static variable in interface org.kepler.dataproxy.datasource.DataSourceInterface
 
yesNoCancelQuestion(String) - Static method in class ptolemy.util.MessageHandler
Ask the user a yes/no/cancel question, and return true if the answer is yes.
yesNoCancelQuestion(String, String, String, String) - Static method in class ptolemy.util.MessageHandler
Ask the user a question with three possible answers; return true if the answer is the first one and false if the answer is the second one; throw an exception if the user selects the third one.
yesNoQuestion(StringToken) - Static method in class ptolemy.data.expr.UtilityFunctions
Query the user for a yes-no answer and return a boolean.
yesNoQuestion(String) - Static method in class ptolemy.util.MessageHandler
Ask the user a yes/no question, and return true if the answer is yes.
yHighEB - Variable in class ptolemy.plot.PlotPoint
Error bar Y low value.
yllcorner - Variable in class org.ecoinformatics.seek.gis.java_gis.CVHull2Raster
y-value of the lower left corner of the grid to be created.
yllcorner - Variable in class org.ecoinformatics.seek.gis.java_gis.Grid
 
yllcorner - Variable in class org.ecoinformatics.seek.gis.java_gis.GridRescaler
The y-value of the lower left corner of the output grid Usually this is a latitude.
yLocation - Variable in class org.ecoinformatics.seek.gis.java_gis.AscGridValue
'yLocation' is the yLocation (latitude) where the value is to be calculated
yLowEB - Variable in class ptolemy.plot.PlotPoint
Error bar Y low value.
ymax - Variable in class com.numericsolutions.geomodeltools.DensityGridActor
 
ymax - Variable in class org.ecoinformatics.seek.gis.grass.GISRasterActor
 
yMean - Variable in class ptolemy.actor.lib.Rician
The mean of the random number along the Y-axis.
ymin - Variable in class com.numericsolutions.geomodeltools.DensityGridActor
 
ymin - Variable in class org.ecoinformatics.seek.gis.grass.GISRasterActor
 
yOffset - Variable in class ptolemy.actor.lib.ArrayElementAsMatrix
The yOffset offset into the input array.
ySpace - Variable in class org.geon.Interpolate
Spacing between the grid cells
yTop - Variable in class ptolemy.actor.lib.gui.SketchedSource
The top of the Y range.

Z

ZERO - Static variable in class com.jgoodies.forms.layout.Sizes
 
zero() - Method in class org.geon.DBConnectionToken.DBConnectionType
Return the type of the additive identity for elements of this type.
zero() - Method in class org.kepler.gis.data.BoundingBoxToken.BoundingBoxType
 
zero() - Method in class org.kepler.gis.data.GISToken.GISType
 
zero() - Method in class org.kepler.gis.data.RasterToken.RasterType
 
zero() - Method in class org.kepler.gis.data.VectorToken.VectorType
 
ZERO - Static variable in class ptolemy.actor.util.Time
A static and final time constant holding a zero.
zero() - Method in class ptolemy.data.ArrayToken
Returns a new ArrayToken representing the additive identity.
zero() - Method in class ptolemy.data.BooleanMatrixToken
Return a new Token representing the additive identity.
zero() - Method in class ptolemy.data.BooleanToken
Returns a token representing the additive identity.
zero() - Method in class ptolemy.data.ComplexMatrixToken
Return a new Token representing the additive identity.
zero() - Method in class ptolemy.data.ComplexToken
Returns a new ComplexToken with value Complex.ZERO.
zero() - Method in class ptolemy.data.DoubleMatrixToken
Return a new Token representing the additive identity.
ZERO - Static variable in class ptolemy.data.DoubleToken
A DoubleToken with the value 0.0.
zero() - Method in class ptolemy.data.DoubleToken
Returns a DoubleToken with value 0.0.
zero() - Method in class ptolemy.data.FixMatrixToken
Return a new Token representing the additive identity with the same precision as the current FixMatrixToken.
zero() - Method in class ptolemy.data.FixToken
Return a new token representing the additive identity with the same precision as this FixToken.
ZERO - Static variable in class ptolemy.data.FloatToken
A FloatToken with the value 0.0.
zero() - Method in class ptolemy.data.FloatToken
Returns a FloatToken with value 0.0.
zero() - Method in class ptolemy.data.IntMatrixToken
Return a new Token representing the additive identity.
ZERO - Static variable in class ptolemy.data.IntToken
A IntToken with the value 0.0.
zero() - Method in class ptolemy.data.IntToken
Returns an IntToken with value 0.
zero() - Method in class ptolemy.data.LongMatrixToken
Return a new Token representing the additive identity.
ZERO - Static variable in class ptolemy.data.LongToken
A LongToken with the value 0.0.
zero() - Method in class ptolemy.data.LongToken
Returns a LongToken with value 0.
ZERO - Static variable in class ptolemy.data.PetiteToken
A PetiteToken with the value 0.0.
zero() - Method in class ptolemy.data.PetiteToken
Returns a PetiteToken with value 0.0.
zero() - Method in class ptolemy.data.RecordToken
Returns a new RecordToken representing the additive identity.
ZERO - Static variable in class ptolemy.data.ShortToken
A ShortToken with the value 0.0.
zero() - Method in class ptolemy.data.ShortToken
Returns an ShortToken with value 0.
zero() - Method in class ptolemy.data.StringToken
Return a StringToken containing an empty string, which is considered as the additive identity of string.
zero() - Method in class ptolemy.data.Token
Returns a new token representing the additive identity.
zero() - Method in class ptolemy.data.TupleToken
Returns a new TupleToken representing the additive identity.
zero() - Method in class ptolemy.data.type.ActorType
Return the type of the additive identity for elements of this type.
zero() - Method in class ptolemy.data.type.BaseType
Return the type of the additive identity for elements of this type.
zero() - Method in class ptolemy.data.type.FixType
Return the type of the additive identity for elements of this type.
zero() - Method in class ptolemy.data.type.StructuredType
Return the type of the additive identity for elements of this type.
zero() - Method in class ptolemy.data.type.test.TestToken.TestType
Return the type of the additive identity for elements of this type.
zero() - Method in interface ptolemy.data.type.Type
Return the type of the additive identity for elements of this type.
zero() - Method in class ptolemy.data.UnionToken
Returns a new UnionToken representing the additive identity.
ZERO - Static variable in class ptolemy.data.UnsignedByteToken
A UnsignedByteToken with the value 0.
zero() - Method in class ptolemy.data.UnsignedByteToken
Returns an UnsignedByteToken with value 0.
ZERO - Static variable in class ptolemy.math.Complex
A Complex number representing zero.
zero(int, int) - Static method in class ptolemy.math.ComplexMatrixMath
Return a new complex matrix whose entries are all zero.
ZERO - Static variable in class ptolemy.math.Fraction
The value of zero as a Fraction.
ZeroLengthCycleAnalysis - Class in ptolemy.graph.analysis
Analysis to check if a cyclic directed graph has a zero-length cycle.
ZeroLengthCycleAnalysis(Graph, ToDoubleMapping) - Constructor for class ptolemy.graph.analysis.ZeroLengthCycleAnalysis
Construct an instance of this class using a default analyzer.
ZeroLengthCycleAnalysis(ZeroLengthCycleAnalyzer) - Constructor for class ptolemy.graph.analysis.ZeroLengthCycleAnalysis
Construct an instance of this class using a given analyzer.
ZeroLengthCycleAnalyzer - Interface in ptolemy.graph.analysis.analyzer
A common interface for all the zero length cycle detection analyzers.
zeroMatrix(int, int) - Static method in class ptolemy.data.expr.UtilityFunctions
Deprecated.
Use zeroMatrixDouble instead.
zeroMatrixComplex(int, int) - Static method in class ptolemy.data.expr.UtilityFunctions
Return a complex zero matrix with the given number of rows and columns.
zeroMatrixDouble(int, int) - Static method in class ptolemy.data.expr.UtilityFunctions
Return a double zero matrix with the given number of rows and columns.
zeroMatrixInt(int, int) - Static method in class ptolemy.data.expr.UtilityFunctions
Return a int zero matrix with the given number of rows and columns.
zeroMatrixLong(int, int) - Static method in class ptolemy.data.expr.UtilityFunctions
Return a long zero matrix with the given number of rows and columns.
ZeroOneSource - Class in ptolemy.domains.modal.kernel.test
This actor produces the sequence 011101011011000... as source of the AMI (Alternating Mark 1) test.
ZeroOneSource(TypedCompositeActor, String) - Constructor for class ptolemy.domains.modal.kernel.test.ZeroOneSource
Construct an actor with the given container and name.
ZeroOrderHold - Class in ptolemy.domains.continuous.lib
Convert discrete events at the input to a continuous-time signal at the output by holding the value of the discrete event until the next discrete event arrives.
ZeroOrderHold(CompositeEntity, String) - Constructor for class ptolemy.domains.continuous.lib.ZeroOrderHold
Construct an actor in the specified container with the specified name.
zeroReturnType(Type) - Static method in class ptolemy.data.Token
Return the (exact) return type of the zero function above.
ZEROTIME - Static variable in class org.kepler.data.datasource.dataturbine.DataTurbine
 
ZIP - Static variable in class org.kepler.objectmanager.data.db.Entity
 
zoom(double, double, double, double) - Method in class ptolemy.plot.PlotBox
Zoom in or out to the specified rectangle.
zoom(double, double, double, double) - Method in interface ptolemy.plot.PlotBoxInterface
Zoom in or out to the specified rectangle.
zoom(double) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Zoom in or out to magnify by the specified factor, from the current magnification.
zoomEqual() - Method in class ptolemy.plot.PlotBox
Zoom to that equal interval widths are on x and y axis.
zoomFit() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Zoom to fit the current figures.
zoomFit(GraphPane, Rectangle2D) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Zoom to fit the bounds.
ZoomListener() - Constructor for class ptolemy.plot.PlotBox.ZoomListener
 
ZoomListener2() - Constructor for class ptolemy.plot.PlotBox.ZoomListener2
 
zoomReset() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Set zoom to the nominal.
zoomReset() - Method in class ptolemy.vergil.icon.EditIconFrame
Set zoom to the nominal.

_

_about() - Method in class ptolemy.actor.gui.TableauFrame
Override the base class to open the intro.htm splash window, which is in the directory ptolemy/configs.
_about() - Method in class ptolemy.gui.Top
Open a dialog with basic information about this window.
_about() - Method in class ptolemy.plot.compat.PxgraphApplication
Display basic information about the application.
_about() - Method in class ptolemy.plot.PlotApplication
 
_about() - Method in class ptolemy.plot.PlotFrame
Display a menu that describes the Plotter.
_about() - Method in class ptolemy.plot.plotml.EditablePlotMLApplication
Display basic information about the application.
_about() - Method in class ptolemy.plot.plotml.HistogramMLApplication
Display basic information about the application.
_about() - Method in class ptolemy.plot.plotml.PlotMLApplication
 
_about() - Method in class ptolemy.plot.plotml.PlotMLFrame
Display basic information about the application.
_absolute() - Method in class ptolemy.data.BooleanToken
Return this token.
_absolute() - Method in class ptolemy.data.ComplexToken
Return a ScalarToken containing the absolute value of the value of this token.
_absolute() - Method in class ptolemy.data.DoubleToken
Return a ScalarToken containing the absolute value of the value of this token.
_absolute() - Method in class ptolemy.data.expr.ConcreteScalarToken
Return this token.
_absolute() - Method in class ptolemy.data.FixToken
Return a ScalarToken containing the absolute value of the value of this token.
_absolute() - Method in class ptolemy.data.FloatToken
Return a ScalarToken containing the absolute value of the value of this token.
_absolute() - Method in class ptolemy.data.IntToken
Return a ScalarToken containing the absolute value of the value of this token.
_absolute() - Method in class ptolemy.data.LongToken
Return a ScalarToken containing the absolute value of the value of this token.
_absolute() - Method in class ptolemy.data.PetiteToken
Return a ScalarToken containing the absolute value of the value of this token.
_absolute() - Method in class ptolemy.data.ScalarToken
Return a ScalarToken containing the absolute value of the value of this token.
_absolute() - Method in class ptolemy.data.ShortToken
Return a ScalarToken containing the absolute value of the value of this token.
_absolute() - Method in class ptolemy.data.UnsignedByteToken
Return a ScalarToken containing the absolute value of the value of this token.
_absolutePTIIURLToJarURL(String) - Static method in class ptolemy.actor.gui.HTMLViewerTableau
If possible convert an absolute URL that refers to a file inside the $PTII tree to a jar URL.
_access - Variable in class ptolemy.vergil.actor.ActorController
The access level defined in the constructor.
_accessThreads - Variable in class ptolemy.kernel.util.test.TestWorkspaceBase
 
_action - Variable in class ptolemy.actor.gui.properties.ActionGUIProperty
The action.
_activeCount - Variable in class ptolemy.moml.MoMLSimpleApplication
The count of currently executing runs.
_actor - Variable in class org.kepler.provenance.ProvenanceEvent
 
_actor - Variable in class ptolemy.actor.process.ProcessThread
The actor that to be executed.
_actor - Variable in class ptolemy.actor.util.DefaultCausalityInterface
The associated actor.
_actor - Variable in class ptolemy.domains.de.kernel.DEEvent
The destination actor.
_Actor(String, int, int, int, int, int) - Constructor for class ptolemy.domains.sdf.optimize.OptimalScheduleFinder._Actor
Construct an instance of Actor, providing its name, repetition vector count and profile information.
_ACTOR_INSTANCE_NAME - Static variable in class org.kepler.scriptengine.ScriptEngineActor
The name of the actor object in the script.
_actorChoiceChanged() - Method in class org.kepler.sms.actors.MappingRefinementDialog
 
_actorDepthVersion - Variable in class ptolemy.actor.util.CausalityInterfaceForComposites
Workspace version when actor depth was last computed.
_actorFinished(NamedObj) - Method in class ptolemy.actor.Director
Return true if the actor finished execution.
_actorFired() - Method in class ptolemy.domains.de.kernel.DEDirector
Perform book keeping procedures after an actor firing.
_actorFiring(FiringEvent) - Method in class ptolemy.actor.AtomicActor
Send an actor firing event to all actor firing listeners that have registered with this actor.
_actorFiring(FiringEvent.FiringEventType, int) - Method in class ptolemy.actor.AtomicActor
Send an actor firing event type to all actor firing listeners that have registered with this actor.
_actorFiring(FiringEvent) - Method in class ptolemy.actor.CompositeActor
Send an actor firing event to all actor firing listeners that have registered with this actor.
_actorFiring(FiringEvent.FiringEventType, int) - Method in class ptolemy.actor.CompositeActor
Send an actor firing event type to all actor firing listeners that have registered with this actor.
_actorFiringListeners - Variable in class ptolemy.actor.AtomicActor
The list of ActorFiringListeners registered with this object.
_actorFiringListeners - Variable in class ptolemy.actor.CompositeActor
The list of ActorFiringListeners registered with this object.
_actorInitialized() - Method in class ptolemy.actor.process.ProcessThread
Notify that the actor has been initialized.
_actorObject - Variable in class org.kepler.scriptengine.ScriptEngineActor
The actor object in the script.
_actors - Variable in class ptolemy.actor.gui.ExecutionAspectPlotterEditorFactory
Contains the actors inside a ptides platform (=platforms).
_actorsAllowedToFire - Variable in class ptolemy.actor.sched.FixedPointDirector
The set of actors that have returned true in their prefire() methods in the current iteration.
_actorsFinished - Variable in class ptolemy.domains.de.kernel.DEDirector
Actors that just got granted all the resources they needed for execution but have not actually been fired yet.
_actorsFinishedExecution - Variable in class ptolemy.actor.Director
Set of actors that have returned false from postfire(), indicating that they do not wish to be iterated again.
_actorsFinishedFiring - Variable in class ptolemy.actor.sched.FixedPointDirector
The set of actors that have been fired in this iteration with all inputs known.
_actorsFired - Variable in class ptolemy.actor.sched.FixedPointDirector
Actors that were fired in the most recent invocation of the fire() method.
_actorsInExecution - Variable in class ptolemy.domains.de.kernel.DEDirector
Actors and their matching events currently in execution and waiting for resources.
_actorToDepth - Variable in class ptolemy.actor.util.CausalityInterfaceForComposites
A table giving the depths of actors.
_add(Token) - Method in class ptolemy.data.AbstractConvertibleToken
Return a new token whose value is the value of the argument Token added to the value of this Token.
_add(Token) - Method in class ptolemy.data.AbstractNotConvertibleToken
Return a new token whose value is the value of the argument token added to the value of this token.
_add(Token) - Method in class ptolemy.data.ArrayToken
Return a new token whose value is the value of the argument token added to the value of this token.
_add(ScalarToken) - Method in class ptolemy.data.BooleanToken
Return a new token whose value is the value of the argument Token added to the value of this Token.
_add(MatrixToken) - Method in class ptolemy.data.ComplexMatrixToken
Return a new token whose value is the value of the argument Token added to the value of this Token.
_add(ScalarToken) - Method in class ptolemy.data.ComplexToken
Return a new token whose value is the value of the argument Token added to the value of this Token.
_add(Token) - Method in class ptolemy.data.DateToken
Subtract is not supported for Dates.
_add(MatrixToken) - Method in class ptolemy.data.DoubleMatrixToken
Return a new token whose value is the value of the argument Token added to the value of this Token.
_add(ScalarToken) - Method in class ptolemy.data.DoubleToken
Return a new token whose value is the value of the argument Token added to the value of this Token.
_add(ScalarToken) - Method in class ptolemy.data.expr.ConcreteScalarToken
Throw an exception.
_add(MatrixToken) - Method in class ptolemy.data.FixMatrixToken
Return a new token whose value is the value of the argument Token added to the value of this Token.
_add(ScalarToken) - Method in class ptolemy.data.FixToken
Return a new token whose value is the value of the argument Token added to the value of this Token.
_add(ScalarToken) - Method in class ptolemy.data.FloatToken
Return a new token whose value is the value of the argument Token added to the value of this Token.
_add(MatrixToken) - Method in class ptolemy.data.IntMatrixToken
Return a new token whose value is the value of the argument Token added to the value of this Token.
_add(ScalarToken) - Method in class ptolemy.data.IntToken
Return a new token whose value is the value of the argument Token added to the value of this Token.
_add(MatrixToken) - Method in class ptolemy.data.LongMatrixToken
Return a new token whose value is the value of the argument Token added to the value of this Token.
_add(ScalarToken) - Method in class ptolemy.data.LongToken
Return a new token whose value is the value of the argument Token added to the value of this Token.
_add(MatrixToken) - Method in class ptolemy.data.MatrixToken
Return a new token whose value is the value of the argument Token added to the value of this Token.
_add(ScalarToken) - Method in class ptolemy.data.PetiteToken
Return a new token whose value is the value of the argument Token added to the value of this Token.
_add(Token) - Method in class ptolemy.data.RecordToken
Return a new token whose value is the field-wise addition of this token and the argument.
_add(ScalarToken) - Method in class ptolemy.data.ScalarToken
Return a new token whose value is the value of the argument token added to the value of this token.
_add(ScalarToken) - Method in class ptolemy.data.ShortToken
Return a new token whose value is the value of the argument Token added to the value of this Token.
_add(ScalarToken) - Method in class ptolemy.data.SmoothToken
Return a new token whose value is the value of the argument Token added to the value of this Token.
_add(Token) - Method in class ptolemy.data.StringToken
Return a new token whose value is the value of the argument Token added to the value of this Token.
_add(Token) - Method in class ptolemy.data.UnionToken
Return a new token whose value is the sum of this token and the argument.
_add(ScalarToken) - Method in class ptolemy.data.UnsignedByteToken
Return a new token whose value is the value of the argument Token added to the value of this Token.
_add(JContextMenu, Action, String) - Method in class ptolemy.vergil.toolbox.MenuActionFactory
Add an action to the context menu.
_add(JMenu, Action) - Method in class ptolemy.vergil.toolbox.MenuActionFactory
Add an action to the submenu.
_add(JContextMenu, Action, String) - Method in class ptolemy.vergil.toolbox.RadioMenuActionFactory
Add an action to the context menu.
_add(JMenu, Action) - Method in class ptolemy.vergil.toolbox.RadioMenuActionFactory
Add an action to the submenu.
_addAllContainedEntities(CompositeEntity, List<NamedObj>, boolean, boolean) - Method in class ptolemy.data.expr.ConstraintMonitor
Add to the specified list all contained entities of the specified container that are not class definitions.
_addAttribute(Attribute) - Method in class ptolemy.kernel.util.NamedObj
Add an attribute.
_addCategoryExponents(ScalarToken) - Method in class ptolemy.data.ScalarToken
Add the corresponding unit category exponents.
_addCompositeToExistingFrame(CompositeEntity, LibraryAttribute) - Method in class org.kepler.gui.frame.TabbedKeplerGraphTableau
 
_addEdge(Node, Node, boolean, Object) - Method in class ptolemy.graph.DirectedAcyclicGraph
Create and add an edge with a specified source node, sink node, and optional weight.
_addEdge(Node, Node, boolean, Object) - Method in class ptolemy.graph.Graph
Create and add an edge with a specified source node, sink node, and optional weight.
_addElement(Token) - Method in class ptolemy.data.ComplexMatrixToken
Return a new token whose value is the value of the argument Token added to the value of each element of this Token.
_addElement(Token) - Method in class ptolemy.data.DoubleMatrixToken
Return a new token whose value is the value of the argument Token added to the value of each element of this Token.
_addElement(Token) - Method in class ptolemy.data.FixMatrixToken
Return a new token whose value is the value of the argument Token added from the value of each element of this Token.
_addElement(Token) - Method in class ptolemy.data.IntMatrixToken
Return a new token whose value is the value of the argument Token added to the value of each element of this Token.
_addElement(Token) - Method in class ptolemy.data.LongMatrixToken
Return a new token whose value is the value of the argument Token added to the value of each element of this Token.
_addElement(Token) - Method in class ptolemy.data.MatrixToken
Return a new token whose value is the value of the argument Token added to the value of each element of this Token.
_addEntity(int, RegEntity.EntityType, String, String, int) - Method in class org.kepler.provenance.sql.SQLRecording
Add a new row to the entity table.
_addEntity(int, RegEntity.EntityType, String, String, int) - Method in class org.kepler.provenance.sql.SQLRecordingV7
Add a new row to the entity table.
_addEntity(int, RegEntity.EntityType, String, String, int) - Method in class org.kepler.provenance.sql.SQLRecordingV8
Add a new row to the entity table.
_addEntity(ComponentEntity) - Method in class ptolemy.actor.CompositeActor
Add an actor to this container with minimal error checking.
_addEntity(ComponentEntity) - Method in class ptolemy.actor.LazyTypedCompositeActor
Add an entity or class definition to this container.
_addEntity(ComponentEntity) - Method in class ptolemy.actor.lib.hoc.Case
Override the base class to ensure that the default refinement remains last.
_addEntity(ComponentEntity) - Method in class ptolemy.actor.lib.hoc.ReflectComposite
Override the base class to queue a change request to remove any previously contained entity and its mirrored ports, and to mirror the ports of the added entity.
_addEntity(ComponentEntity) - Method in class ptolemy.actor.TypedCompositeActor
Add an actor to this container with minimal error checking.
_addEntity(ComponentEntity) - Method in class ptolemy.domains.modal.kernel.FSMActor
Add a state to this FSMActor.
_addEntity(ComponentEntity) - Method in class ptolemy.domains.modal.modal.Case
Deprecated.
Override the base class to create the transition associated with this refinement if the argument is an instance of Refinement.
_addEntity(ComponentEntity) - Method in class ptolemy.kernel.CompositeEntity
Add an entity or class definition to this container.
_addEvent(TimeDelay.PendingEvent) - Method in class ptolemy.actor.lib.TimeDelay
Insert a new event into the queue of pending events.
_addFormats(String) - Method in class org.kepler.ddp.actor.pattern.AtomicPatternActor
Add the formats in the configuration file as choices to formatType.
_addHotKeys(JGraph) - Method in class org.kepler.gui.frame.TabbedKeplerGraphFrame.TabbedKeplerController
Add hot keys to the actions in the given JGraph.
_addHotKeys(JGraph) - Method in class ptolemy.vergil.actor.ActorEditorGraphController
Add hot keys to the actions in the given JGraph.
_addHotKeys(JGraph) - Method in class ptolemy.vergil.actor.ActorViewerGraphController
Add hot keys to the actions in the given JGraph.
_addHotKeys(JGraph) - Method in class ptolemy.vergil.basic.BasicGraphController
Add hot keys to the actions in the given JGraph.
_addHotKeys(JGraph) - Method in class ptolemy.vergil.basic.RunnableGraphController
Add hot keys to the actions in the given JGraph.
_addHotKeys(JGraph) - Method in class ptolemy.vergil.modal.CaseGraphFrame.CaseGraphController
Add hot keys to the actions in the given JGraph.
_addHotKeys(JGraph) - Method in class ptolemy.vergil.modal.FSMViewerGraphController
Add hot keys to the actions in the given JGraph.
_additionalJars - Variable in class org.kepler.ddp.director.DDPEngine
A set of additional jar names to send to the server.
_addLayoutMenu(JMenu) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Add a layout menu.
_addLiveFigure(Figure) - Method in class ptolemy.vergil.icon.DynamicEditorIcon
Add the figure to the list of figures managed by this icon.
_addMainPane() - Method in class ptolemy.actor.gui.HTMLViewer
Add the main content pane (for HTML).
_addMainPane() - Method in class ptolemy.vergil.actor.DocViewer
Override the base class to do nothing.
_addMenus() - Method in class org.kepler.gui.KeplerGraphFrame
Create the menus that are used by this frame.
_addMenus() - Method in class ptolemy.actor.gui.PlotTableauFrame
Create the menus that are used by this frame.
_addMenus() - Method in class ptolemy.actor.gui.run.CustomizableRunFrame
Add a Customize menu.
_addMenus() - Method in class ptolemy.actor.gui.RunTableau.RunFrame
Add a Debug menu.
_addMenus() - Method in class ptolemy.actor.gui.syntax.SyntaxTextEditorForStringAttributes
Create an edit menu.
_addMenus() - Method in class ptolemy.actor.gui.TableauFrame
Add a View menu and items to the File:New menu if a tableau was given in the constructor.
_addMenus() - Method in class ptolemy.actor.gui.TextEditor
Create an edit menu.
_addMenus() - Method in class ptolemy.gui.Top
Add menus to the menu bar.
_addMenus() - Method in class ptolemy.vergil.actor.ActorGraphFrame
Create the menus that are used by this frame.
_addMenus() - Method in class ptolemy.vergil.actor.DocViewer
Add a Build menu item.
_addMenus() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Create the menus that are used by this frame.
_addMenus() - Method in class ptolemy.vergil.basic.ExtendedGraphFrame
Create the menus that are used by this frame.
_addMenus() - Method in class ptolemy.vergil.icon.EditIconFrame
Create the menus that are used by this frame.
_addMenus() - Method in class ptolemy.vergil.modal.CaseGraphFrame
Create the menus that are used by this frame.
_addMenus() - Method in class ptolemy.vergil.modal.FSMGraphFrame
Create the menus that are used by this frame.
_addModel(CompositeActor) - Static method in class org.kepler.webview.server.WebViewServer
Add a model to the set managed by the server.
_addonActorController - Variable in class ptolemy.vergil.actor.ActorViewerGraphController
The controller for actors with addon gui behavior.
_addPair(String, JLabel, Component, Object) - Method in class ptolemy.actor.gui.PtolemyQuery
Override the base class to put a button on the right if the Settable object for which we are adding an entry itself contains Settable parameters.
_addPair(String, JLabel, Component, Object) - Method in class ptolemy.gui.Query
Add a label and a widget to the panel.
_addPair(String, JLabel, Component, Object) - Method in class ptolemy.gui.QueryChooser
Add a label and a widget to the panel.
_addParameters() - Method in class org.kepler.ddp.director.DDPEngine
Add parameters to the containing director.
_addParameters() - Method in class org.kepler.hadoop.director.HadoopEngine
Add parameters to the containing director.
_addParameters() - Method in class org.kepler.spark.director.SparkEngine
Add parameters to the containing director.
_addPoint(boolean, String) - Method in class ptolemy.plot.plotml.HistogramMLParser
Add a point based on the current attributes.
_addPoint(boolean, String) - Method in class ptolemy.plot.plotml.PlotMLParser
Add a point based on the current attributes.
_addPort(Port) - Method in class ptolemy.actor.CompositeActor
Add a port to this actor.
_addPort(TypedIOPort) - Method in class ptolemy.actor.lib.Assert
Override the base class to create an output port corresponding to each new input port added.
_addPort(Port) - Method in class ptolemy.actor.lib.hoc.MirrorComposite
Add a port to this actor.
_addPort(Port) - Method in class ptolemy.actor.lib.hoc.MirrorComposite.MirrorCompositeContents
Add a port to this actor.
_addPort(Port) - Method in class ptolemy.actor.lib.hoc.ReflectComposite
Add a port to this actor.
_addPort(Port) - Method in class ptolemy.actor.lib.hoc.ReflectComposite.ReflectCompositeContents
Add a port to this actor.
_addPort(Port) - Method in class ptolemy.actor.TypedCompositeActor
Add a port to this actor.
_addPort(Port) - Method in class ptolemy.actor.TypeOpaqueCompositeActor
Override the base class to throw an exception if the added port is not an instance of TypedIOPort.
_addPort(Port) - Method in class ptolemy.component.AtomicComponent
Add a port to this entity.
_addPort(Port) - Method in class ptolemy.domains.continuous.lib.DifferentialSystem
Add a port to this actor.
_addPort(Port) - Method in class ptolemy.domains.modal.modal.ModalController
Override the base class to check that the container contains a mirror port.
_addPort(Port) - Method in class ptolemy.domains.modal.modal.Refinement
Override the base class to check that the container contains a mirror port.
_addPort(T) - Method in class ptolemy.kernel.Entity
Add a port to this entity.
_addRefinementAction - Variable in class ptolemy.vergil.modal.modal.HierarchicalStateController
The action that adds a refinement.
_addRelation(ComponentRelation) - Method in class ptolemy.actor.CompositeActor
Add a relation to this container.
_addRelation(ComponentRelation) - Method in class ptolemy.actor.LazyTypedCompositeActor
Add a relation to this container.
_addRelation(ComponentRelation) - Method in class ptolemy.actor.TypedCompositeActor
Add a relation to this container.
_addRelation(ComponentRelation) - Method in class ptolemy.component.ComponentActor
 
_addRelation(ComponentRelation) - Method in class ptolemy.domains.modal.kernel.FSMActor
Add a transition to this FSMActor.
_addRelation(ComponentRelation) - Method in class ptolemy.domains.modal.kernel.ia.InterfaceAutomaton
Add an InterfaceAutomatonTransition to this InterfaceAutomaton.
_addRelation(ComponentRelation) - Method in class ptolemy.kernel.CompositeEntity
Add a relation to this container.
_addReloadAccessorsMenu(JMenu) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Add a Reload Accessors menu choice.
_addSubModelToContract(SingleInputPatternActor, Operator) - Method in class org.kepler.spark.director.SparkEngine
Write the sub-workflow of a SingleInputPatternActor either to a parameter in the Spark job configuration or to a file.
_addSubModelToContract(SingleInputPatternActor, Operator) - Method in class org.kepler.stratosphere.director.StratosphereEngine
Write the sub-workflow of a SingleInputPatternActor either to a parameter in the PACT plan configuration or to a file.
_addTab(JPanel, String) - Method in class org.kepler.gui.TabbedDialog
Add a new tab to the TabbedDialog, which will act as a container for the passed JPanel, and which will have the title text specified in tabText.
_addTimestampVal - Variable in class org.kepler.provenance.TextFileRecording
If true, add timestamp to output.
_addWorkflow() - Method in class org.kepler.provenance.sql.SQLRecording
Add a new row to the workflow table.
_addWorkflow() - Method in class org.kepler.provenance.sql.SQLRecordingV7
Add a new row to the workflow table.
_addWorkflow() - Method in class org.kepler.provenance.sql.SQLRecordingV8
Add a new row to the workflow table.
_addWorkflowChange() - Method in class org.kepler.provenance.sql.SQLRecordingV7
Create a new row in the workflow_change table.
_addWorkflowChange() - Method in class org.kepler.provenance.sql.SQLRecordingV8
Create a new row in the workflow_change table.
_adjust(double) - Static method in class ptolemy.data.PetiteToken
Adjust the value of the PetiteToken to limit it to the range [-1,1) while maintaining the precision of PetiteToken.
_adjustDeferrals() - Method in class ptolemy.kernel.ComponentEntity
Adjust the deferrals in this object.
_adjustDeferrals() - Method in class ptolemy.kernel.CompositeEntity
Adjust the deferrals in this object.
_adjustOverride(int) - Method in class ptolemy.kernel.util.NamedObj
Adjust the _override field of this object, if there is one, by incrementing the value at the specified depth by one, and do the same for all contained objects, with one larger depth.
_alreadyReadInputs - Variable in class ptolemy.actor.lib.hoc.ModelReference
If a derived class calls modelFileOrURL.update() in its fire() method prior to calling super.fire(), then it should set this flag to true.
_alwaysFlushVal - Variable in class org.kepler.provenance.TextFileRecording
If true, flush after writing to output.
_alwaysFlushVal - Variable in class org.kepler.provenance.XMLRecording
Deprecated.
Whether to always flush after writing to output.
_AND - Static variable in class ptolemy.actor.lib.logic.LogicFunction
Deprecated.
Perform a logical AND.
_AND - Static variable in class ptolemy.actor.lib.logic.LogicGate
Perform a logical AND.
_animated - Variable in class ptolemy.vergil.basic.BasicGraphController
Currently animated state, if any.
_animationRenderer - Variable in class ptolemy.vergil.basic.BasicGraphController
Renderer for animation.
_appearanceMenuActionFactory - Variable in class ptolemy.vergil.kernel.AttributeController
The appearance menu factory.
_applicationClass - Static variable in class ptolemy.util.test.junit.ModelTests
The application class.
_applicationConstructor - Static variable in class ptolemy.util.test.junit.ModelTests
The application constructor.
_applicationToplevelMethod - Static variable in class ptolemy.util.test.junit.ModelTests
The application toplevel method.
_apply() - Method in class ptolemy.actor.gui.PortConfigurerDialog
Apply any changes that may have been made in the table.
_apply() - Method in class ptolemy.vergil.unit.UnitConstraintsDialog
Apply the unit constraints to the model.
_applyAction() - Method in class org.kepler.gui.TabbedDialog
method that is called when user clicks the "Apply" button.
_apps - Static variable in class org.kepler.webview.server.WebViewServer
 
_aptree - Variable in class org.kepler.gui.AnnotatedPTreePopupListener
 
_areActorsExternallyBlocked() - Method in class ptolemy.actor.process.CompositeProcessDirector
Return true if one or more contained actor is externally blocked; return false otherwise.
_areAllImmediateTransitionsDisabled(State) - Method in class ptolemy.domains.modal.kernel.FSMActor
Return true if all immediate transitions from the specified state have guards that can be evaluated and that evaluate to false.
_areAllInputsKnown(Actor) - Method in class ptolemy.actor.sched.FixedPointDirector
Return true if all the inputs of the specified actor are known.
_areAllThreadsStopped() - Method in class ptolemy.actor.process.ProcessDirector
Return true if the count of active processes equals the number of paused and blocked threads.
_areConversionsPreferable(CachedMethod.ArgumentConversion[], Class[], CachedMethod.ArgumentConversion[], Class[]) - Static method in class ptolemy.data.expr.CachedMethod
Return true if the conversions in the first argument are preferable to the conversions in the third argument, for methods with argument types given by the second and fourth arguments.
_areForeignKeysIndexed() - Method in class org.kepler.util.sql.DatabaseType
Returns true if foreign keys are automatically indexed.
_areForeignKeysIndexed() - Method in class org.kepler.util.sql.HSQL
Returns true if foreign keys are automatically indexed.
_areForeignKeysIndexed() - Method in class org.kepler.util.sql.Oracle
Returns true if foreign keys are automatically indexed.
_areForeignKeysIndexed() - Method in class org.kepler.util.sql.PostgreSQL
Returns true if foreign keys are automatically indexed.
_arePrimaryKeysIndexed() - Method in class org.kepler.util.sql.DatabaseType
Returns true if primary keys are automatically indexed.
_arePrimaryKeysIndexed() - Method in class org.kepler.util.sql.HSQL
Returns true if primary keys are automatically indexed.
_arePrimaryKeysIndexed() - Method in class org.kepler.util.sql.Oracle
Returns true if primary keys are automatically indexed.
_areThereActiveErrorHighlights() - Method in class ptolemy.vergil.basic.BasicGraphController
Return true if there are active highlights.
_areThreadsDeadlocked() - Method in class ptolemy.actor.process.CompositeProcessDirector
Return false if the number of blocked processes is less than the number of active actors; return true otherwise.
_areThreadsDeadlocked() - Method in class ptolemy.actor.process.ProcessDirector
Return true if the count of active processes in the container is 0.
_areThreadsDeadlocked() - Method in class ptolemy.domains.pn.kernel.TimedPNDirector
Return true if a deadlock is detected.
_areUnitsEqual(ScalarToken) - Method in class ptolemy.data.ScalarToken
Return true if the units of this token are the same as that of the argument token.
_argList - Variable in class ptolemy.data.expr.ASTPtFunctionDefinitionNode
 
_argTypes - Variable in class ptolemy.data.expr.ASTPtFunctionDefinitionNode
 
_aspectForActor - Variable in class ptolemy.actor.Director
Contains a map of actors and the ExecutionAspect that is specified for the actor.
_aspectsPresent - Variable in class ptolemy.actor.Director
True if any of the directed actors specifies a ExecutionAspect in the parameters and this ExecutionAspect exists on this or a hierarchy level above (i.e. has not been deleted).
_assert(boolean, ASTPtRootNode, String) - Method in class ptolemy.data.expr.CParseTreeCodeGenerator
Assert that the given boolean value, which describes the given parse tree node is true.
_assert(boolean, ASTPtRootNode, String) - Method in class ptolemy.data.expr.ParseTreeEvaluator
Assert that the given boolean value, which describes the given parse tree node, is true.
_assert(boolean, ASTPtRootNode, String) - Method in class ptolemy.data.expr.ParseTreeTypeInference
Assert that the given boolean value, which describes the given parse tree node is true.
_associatedAttribute() - Method in class ptolemy.vergil.icon.AttributeValueIcon
Return the associated attribute.
_associatedAttribute - Variable in class ptolemy.vergil.icon.UpdatedValueIcon
The attribute whose value is being represented.
_attachText(String, String) - Method in class ptolemy.kernel.util.NamedObj
Attach the specified text as an attribute with the specified name.
_attachText(String, String) - Method in class ptolemy.moml.EntityLibrary
Override the base class to prevent triggering a populate() call when this occurs.
_attribute - Variable in class ptolemy.vergil.kernel.attributes.AttributeValueAttribute
The associated attribute.
_attributeController - Variable in class ptolemy.vergil.actor.ActorViewerGraphController
The attribute controller.
_attributeController - Variable in class ptolemy.vergil.icon.EditIconGraphController
The attribute controller.
_attributeController - Variable in class ptolemy.vergil.modal.FSMViewerGraphController
The attribute controller.
_attributes - Variable in class org.kepler.objectmanager.cache.CacheObject
 
_attributes - Variable in class ptolemy.actor.gui.PtolemyQuery
Maps an entry name to the attribute that is attached to it.
_attributes - Variable in class ptolemy.moml.LibraryBuilder
Attributes that can be added to a LibraryBuilder via moml configuration.
_attributes - Variable in class ptolemy.plot.plotml.PlotBoxMLParser
Attributes associated with an entity.
_attributes(Object) - Method in class ptolemy.vergil.tree.FullTreeModel
Return the list of attributes, or an empty list if there are none.
_attributes(Object) - Method in class ptolemy.vergil.tree.VisibleTreeModel
Return the list of attributes, or an empty list if there are none.
_attributeValueString() - Method in class ptolemy.vergil.icon.AttributeValueIcon
Get the string value of the attribute to render in the icon.
_audioInDoubleArray - Variable in class ptolemy.media.javasound.LiveSoundCommon
Array of audio samples in double format.
_autoHDFSStage - Variable in class org.kepler.hadoop.director.HadoopEngine
If true, input and output in local file system is automatically staged into or out from HDFS.
_automaticallyInput - Variable in class ptolemy.actor.lib.hoc.RefinementPort
Indicator that the port is automatically an input port because it was set to be an output port.
_automaticallyInput - Variable in class ptolemy.domains.modal.modal.RefinementPort
Indicator that the port is automatically an input port because it was set to be an output port.
_automaticRescale() - Method in class ptolemy.plot.PlotBox
Return whether rescaling of the plot should happen automatic.
_background - Variable in class ptolemy.gui.BasicJApplet
The background color as set by the "background" applet parameter.
_background - Variable in class ptolemy.gui.Query
The background color as set by setBackground().
_background - Variable in class ptolemy.plot.PlotBox
Color of the background, settable from HTML.
_backward - Variable in class ptolemy.actor.lib.Lattice
Backward prediction errors.
_backwardCache - Variable in class ptolemy.actor.lib.Lattice
Cache of backward prediction errors.
_backwardPrunedDependencies - Variable in class ptolemy.actor.util.DefaultCausalityInterface
A record of removed dependencies from output to input, if any.
_base - Variable in class ptolemy.actor.lib.gui.PlotterBase
The base specified in configure().
_base - Variable in class ptolemy.moml.EntityLibrary
The base specified by the configure() method.
_basePath - Variable in class ptolemy.actor.gui.ConfigurationApplication
The base path of the configuration directory, usually "ptolemy/configs" for Ptolemy II, but subclasses might have configurations in a different directory.
_basicGraphFrame - Variable in class ptolemy.vergil.basic.export.html.ExportHTMLAction
The associated Vergil frame.
_bitsPerSample - Variable in class ptolemy.media.javasound.LiveSoundCommon
The number of bits per sample.
_bitwiseAnd(ScalarToken) - Method in class ptolemy.data.BooleanToken
Returns a token representing the bitwise AND of this token and the given token.
_bitwiseAnd(ScalarToken) - Method in class ptolemy.data.ComplexToken
Throw an exception because bitwise AND is not supported.
_bitwiseAnd(ScalarToken) - Method in class ptolemy.data.DoubleToken
Returns a token representing the bitwise AND of this token and the given token.
_bitwiseAnd(ScalarToken) - Method in class ptolemy.data.expr.ConcreteScalarToken
Throw an exception.
_bitwiseAnd(ScalarToken) - Method in class ptolemy.data.FixToken
Returns a token representing the bitwise AND of this token and the given token.
_bitwiseAnd(ScalarToken) - Method in class ptolemy.data.FloatToken
Returns a token representing the bitwise AND of this token and the given token.
_bitwiseAnd(ScalarToken) - Method in class ptolemy.data.IntToken
Returns a token representing the bitwise AND of this token and the given token.
_bitwiseAnd(ScalarToken) - Method in class ptolemy.data.LongToken
Returns a token representing the bitwise AND of this token and the given token.
_bitwiseAnd(ScalarToken) - Method in class ptolemy.data.PetiteToken
Returns a token representing the bitwise AND of this token and the given token.
_bitwiseAnd(ScalarToken) - Method in class ptolemy.data.ScalarToken
Returns a token representing the bitwise AND of this token and the given token.
_bitwiseAnd(ScalarToken) - Method in class ptolemy.data.ShortToken
Returns a token representing the bitwise AND of this token and the given token.
_bitwiseAnd(ScalarToken) - Method in class ptolemy.data.UnsignedByteToken
Returns a token representing the bitwise AND of this token and the given token.
_bitwiseNot() - Method in class ptolemy.data.BooleanToken
Returns a token representing the bitwise NOT of this token.
_bitwiseNot() - Method in class ptolemy.data.ComplexToken
Throw an exception because bitwise NOT is not supported.
_bitwiseNot() - Method in class ptolemy.data.DoubleToken
Returns a token representing the bitwise NOT of this token.
_bitwiseNot() - Method in class ptolemy.data.expr.ConcreteScalarToken
Throw an exception.
_bitwiseNot() - Method in class ptolemy.data.FixToken
Returns a token representing the bitwise NOT of this token.
_bitwiseNot() - Method in class ptolemy.data.FloatToken
Returns a token representing the bitwise NOT of this token.
_bitwiseNot() - Method in class ptolemy.data.IntToken
Returns a token representing the bitwise NOT of this token.
_bitwiseNot() - Method in class ptolemy.data.LongToken
Returns a token representing the bitwise NOT of this token.
_bitwiseNot() - Method in class ptolemy.data.PetiteToken
Returns a token representing the bitwise NOT of this token.
_bitwiseNot() - Method in class ptolemy.data.ScalarToken
Returns a token representing the bitwise NOT of this token.
_bitwiseNot() - Method in class ptolemy.data.ShortToken
Returns a token representing the bitwise NOT of this token.
_bitwiseNot() - Method in class ptolemy.data.UnsignedByteToken
Returns a token representing the bitwise NOT of this token.
_bitwiseOr(ScalarToken) - Method in class ptolemy.data.BooleanToken
Returns a token representing the bitwise OR of this token and the given token.
_bitwiseOr(ScalarToken) - Method in class ptolemy.data.ComplexToken
Throw an exception because bitwise OR is not supported.
_bitwiseOr(ScalarToken) - Method in class ptolemy.data.DoubleToken
Returns a token representing the bitwise OR of this token and the given token.
_bitwiseOr(ScalarToken) - Method in class ptolemy.data.expr.ConcreteScalarToken
Throw an exception.
_bitwiseOr(ScalarToken) - Method in class ptolemy.data.FixToken
Returns a token representing the bitwise OR of this token and the given token.
_bitwiseOr(ScalarToken) - Method in class ptolemy.data.FloatToken
Returns a token representing the bitwise OR of this token and the given token.
_bitwiseOr(ScalarToken) - Method in class ptolemy.data.IntToken
Returns a token representing the bitwise OR of this token and the given token.
_bitwiseOr(ScalarToken) - Method in class ptolemy.data.LongToken
Returns a token representing the bitwise OR of this token and the given token.
_bitwiseOr(ScalarToken) - Method in class ptolemy.data.PetiteToken
Returns a token representing the bitwise OR of this token and the given token.
_bitwiseOr(ScalarToken) - Method in class ptolemy.data.ScalarToken
Returns a token representing the bitwise OR of this token and the given token.
_bitwiseOr(ScalarToken) - Method in class ptolemy.data.ShortToken
Returns a token representing the bitwise OR of this token and the given token.
_bitwiseOr(ScalarToken) - Method in class ptolemy.data.UnsignedByteToken
Returns a token representing the bitwise OR of this token and the given token.
_bitwiseXor(ScalarToken) - Method in class ptolemy.data.BooleanToken
Returns a token representing the bitwise XOR of this token and the given token.
_bitwiseXor(ScalarToken) - Method in class ptolemy.data.ComplexToken
Throw an exception because bitwise XOR is not supported.
_bitwiseXor(ScalarToken) - Method in class ptolemy.data.DoubleToken
Returns a token representing the bitwise XOR of this token and the given token.
_bitwiseXor(ScalarToken) - Method in class ptolemy.data.expr.ConcreteScalarToken
Throw an exception.
_bitwiseXor(ScalarToken) - Method in class ptolemy.data.FixToken
Returns a token representing the bitwise XOR of this token and the given token.
_bitwiseXor(ScalarToken) - Method in class ptolemy.data.FloatToken
Returns a token representing the bitwise XOR of this token and the given token.
_bitwiseXor(ScalarToken) - Method in class ptolemy.data.IntToken
Returns a token representing the bitwise XOR of this token and the given token.
_bitwiseXor(ScalarToken) - Method in class ptolemy.data.LongToken
Returns a token representing the bitwise XOR of this token and the given token.
_bitwiseXor(ScalarToken) - Method in class ptolemy.data.PetiteToken
Returns a token representing the bitwise XOR of this token and the given token.
_bitwiseXor(ScalarToken) - Method in class ptolemy.data.ScalarToken
Returns a token representing the bitwise XOR of this token and the given token.
_bitwiseXor(ScalarToken) - Method in class ptolemy.data.ShortToken
Returns a token representing the bitwise XOR of this token and the given token.
_bitwiseXor(ScalarToken) - Method in class ptolemy.data.UnsignedByteToken
Returns a token representing the bitwise XOR of this token and the given token.
_booleanResponse(Handler<AsyncResult<JsonArray>>, String, boolean) - Method in class org.kepler.webview.server.app.AbstractApp
 
_bottomPadding - Variable in class ptolemy.plot.PlotBox
Bottom padding.
_boundaryDetector - Variable in class ptolemy.domains.pn.kernel.PNQueueReceiver
A BoundaryDetector determines the topological relationship of a Receiver with respect to boundary ports.
_bufferSize - Variable in class ptolemy.media.javasound.LiveSoundCommon
The requested buffer size in samples per channel.
_buildLocalReceiverMaps() - Method in class ptolemy.domains.modal.kernel.FSMDirector
Build for each state of the mode controller the map from input ports of the modal model to the local receivers when the mode controller is in that state.
_buttonPressed - Variable in class ptolemy.gui.ComponentDialog
The label of the button pushed to dismiss the dialog.
_byteArrayToDoubleArray(double[][], byte[]) - Method in class ptolemy.media.javasound.LiveSoundCommon
Convert a byte array of audio samples in linear signed PCM big endian format into a double array of audio samples (-1, 1) range.
_bytesPerSample - Variable in class ptolemy.media.javasound.LiveSoundCommon
The number of bytes per sample, default 2.
_bytesRead - Variable in class org.geon.BinaryFileReader
The current bytes read.
_cachedTerms - Variable in class ptolemy.actor.util.GLBFunction
The types terms found in destination ports.
_cachedTypes - Variable in class ptolemy.actor.util.GLBFunction
The constant types found in destination ports.
_cancel() - Method in class ptolemy.actor.gui.PortConfigurerDialog
 
_cancel() - Method in class ptolemy.actor.gui.PtolemyDialog
Cancel this dialog, saving if necessary.
_cancel() - Method in class ptolemy.vergil.unit.UnitSolverDialog
 
_cancelAction() - Method in class org.kepler.gui.TabbedDialog
method that is called when user clicks the "Cancel" button.
_cancelButton - Variable in class ptolemy.actor.gui.PtolemyDialog
The cancel button.
_CANCELED - Static variable in class ptolemy.gui.Top
Indicator that a close operation is canceled.
_canvasPanel - Variable in class org.kepler.gui.KeplerGraphFrame
A panel for the canvas.
_captureData - Variable in class ptolemy.media.javasound.LiveSoundCommon
Array of audio samples in byte format.
_captureIsActive - Variable in class ptolemy.media.javasound.LiveSoundCommon
true is audio capture is currently active.
_caseMenu - Variable in class ptolemy.vergil.modal.CaseGraphFrame
The case menu.
_catchUp() - Method in class ptolemy.actor.lib.Clock
Deprecated.
Catch up the tentative view of what the next output time should be.
_causalityInterface - Variable in class ptolemy.actor.CompositeActor
The causality interface, if it has been created.
_causalityInterface - Variable in class ptolemy.domains.de.lib.Timer
Deprecated.
The causality interface, if it has been created.
_centeredValue - Variable in class ptolemy.vergil.kernel.attributes.FilledShapeAttribute
Most recently set value of the centered parameter.
_cgDirectory - Static variable in class ptolemy.util.test.junit.AutoCGTests
The directory where the code is generated, usually $HOME/cg.
_changeEntityFullName(String) - Method in class org.kepler.provenance.sql.SQLRecording
Modify a NamedObj's full name.
_changeEntityFullName(String) - Method in class org.kepler.provenance.sql.SQLRecordingV8
Modify a NamedObj's full name.
_changeListeners - Variable in class ptolemy.kernel.util.NamedObj
A list of weak references to change listeners.
_changeLock - Variable in class ptolemy.kernel.util.NamedObj
Object for locking accesses to change request list and status.
_changeRequests - Variable in class ptolemy.kernel.util.NamedObj
A list of pending change requests.
_changeWorkflowNameColumn(String) - Method in class org.kepler.provenance.sql.SQLRecordingV8
Change the workflow.name column for the current workflow.
_changeWorkflowNameColumn(String, KeplerLSID) - Method in class org.kepler.provenance.sql.SQLRecordingV8
Change the workflow.name column for a specific LSID.
_channel - Variable in class ptolemy.actor.PubSubPort
Cached channel name, for publish and subscribe.
_channels - Variable in class ptolemy.media.javasound.LiveSoundCommon
The number of channels.
_checkConfigDir() - Method in class org.kepler.ddp.director.DDPEngine
Check that the configuration directory is set and exists on the file system.
_checkConnection(boolean) - Method in class org.kepler.provenance.sql.SQLRecording
This method opens the database connection if necessary.
_checkContainer(CompositeEntity) - Method in class ptolemy.actor.gui.Effigy
Check that the specified container is of a suitable class for this entity, i.e., ModelDirectory or Effigy.
_checkContainer(CompositeEntity) - Method in class ptolemy.actor.gui.PtolemyEffigy
Check that the specified container is of a suitable class for this entity, i.e., ModelDirectory or PtolemyEffigy.
_checkContainer(Entity) - Method in class ptolemy.actor.IOPort
Check that the specified container implements the Actor interface (or is null).
_checkContainer(Entity) - Method in class ptolemy.actor.lib.hoc.MultiCompositePort
Override the base class to ensure that the proposed container is a MultiCompositeActor or null.
_checkContainer(Entity) - Method in class ptolemy.actor.lib.hoc.Refinement
Override the base class to ensure that the proposed container is a MultiCompositeActor or null.
_checkContainer(Entity) - Method in class ptolemy.actor.TypedIOPort
Override the base class to ensure that the proposed container implements the TypedActor interface (the base class ensures that the container implements the Actor interface), is null, or is an EntityLibrary.
_checkContainer(CompositeEntity) - Method in class ptolemy.actor.TypedIORelation
Override the method in the super class to constrain the container to be an instance of TypedCompositeActor, or to be null.
_checkContainer(Entity) - Method in class ptolemy.domains.modal.modal.ModalBasePort
Override the base class to ensure that the proposed container is a CompositeEntity or null.
_checkContainer(Entity) - Method in class ptolemy.domains.modal.modal.ModalController
Override the base class to ensure that the proposed container is a ModalModel or null.
_checkContainer(Entity) - Method in class ptolemy.domains.modal.modal.ModalRefinement
Override the base class to ensure that the proposed container is a ModalModel or null.
_checkContainer(Entity) - Method in class ptolemy.domains.modal.modal.Refinement
Override the base class to ensure that the proposed container is a ModalModel or null.
_checkContainer(Entity) - Method in class ptolemy.domains.modal.modal.RefinementPort
Override the base class to ensure that the proposed container implements the TypedActor interface (the base class ensures that the container implements the Actor interface), is null, or is an EntityLibrary.
_checkContainer(InstantiableNamedObj) - Method in class ptolemy.kernel.ComponentEntity
Check the specified container.
_checkContainer(Entity) - Method in class ptolemy.kernel.ComponentPort
Override the base class to ensure that the proposed container is a ComponentEntity.
_checkContainer(CompositeEntity) - Method in class ptolemy.kernel.ComponentRelation
Check that the specified container is of a suitable class for this relation.
_checkContainer(Entity) - Method in class ptolemy.kernel.Port
Check that the specified container is of a suitable class for this port.
_checkContainer(NamedObj) - Method in class ptolemy.kernel.util.Attribute
Check that the specified container is of a suitable class for this attribute.
_checkData(byte[]) - Method in class org.kepler.provenance.sql.SQLRecordingV8
Adds data to the data table if not already there.
_checkData(File) - Method in class org.kepler.provenance.sql.SQLRecordingV8
Adds data to the data table if not already there.
_checkDatasetIndex(int) - Method in class ptolemy.plot.Histogram
Check the argument to ensure that it is a valid data set index.
_checkDatasetIndex(int) - Method in class ptolemy.plot.Plot
Check the argument to ensure that it is a valid data set index.
_checkDynamicRateVariables(CompositeActor, List) - Method in class ptolemy.domains.sdf.kernel.SDFScheduler
Populate the given set with the dynamic rate variables in the model.
_checkEntity(Nameable, RegEntity.EntityType) - Method in class org.kepler.provenance.sql.SQLRecording
Check if a NamedObj has been inserted into the entity table.
_checkFilesBeforeStartingServer() - Method in class org.kepler.ddp.director.DDPEngine
Check the existence of required files before starting the DDP server.
_checkFilesBeforeStartingServer() - Method in class org.kepler.spark.director.SparkEngine
Check the existence of the Spark assembly jar.
_checkForFileData(Token) - Method in class org.kepler.provenance.sql.SQLRecordingV8
See if a token contains a valid filename.
_checkForImplied(List<NamedObj>) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Return true if any element of the specified list is implied.
_checkForNextEvent() - Method in class ptolemy.domains.de.kernel.DEDirector
Enforces a firing of a DE director only handles events with the same tag.
_checkForNull(Object, String) - Method in class ptolemy.plot.plotml.PlotBoxMLParser
If the argument is null, throw an exception with the given message.
_checkForNull(Object, String) - Method in class ptolemy.vergil.actor.DocManager
If the argument is null, throw an exception with the given message.
_checkInterfaceCompatibility(CompositeActor, int, boolean, String) - Method in class ptolemy.chic.ChicInvoker
Check the interface compatibility of all entities that are directly or indirectly contained by the model.
_checkLiberalLink(Relation) - Method in class ptolemy.actor.IOPort
Override parent method to ensure compatibility of the relation and validity of the width of the port.
_checkLiberalLink(ComponentRelation) - Method in class ptolemy.actor.TypedIOPort
Override the method in the super class to ensure compatibility of the relation.
_checkLiberalLink(Relation) - Method in class ptolemy.kernel.ComponentPort
Check the validity of a link.
_checkLink(Relation) - Method in class ptolemy.actor.IOPort
Override parent method to ensure compatibility of the relation and validity of the width of the port.
_checkLink(Relation) - Method in class ptolemy.actor.TypedIOPort
Override the method in the super class to ensure compatibility of the relation.
_checkLink(Relation) - Method in class ptolemy.kernel.ComponentPort
Override the base class to throw an exception if the relation is not a ComponentRelation, or if the container of the port or relation is null, or if the container of this port is a class definition and the link is not an inside link.
_checkLink(Relation) - Method in class ptolemy.kernel.Port
Check that this port is compatible with the specified relation, that it has a container.
_checkModel() - Method in class org.kepler.ddp.director.DDPEngine
Check the container of this director for incorrect actors, etc.
_checkModelForNonDDPActors(CompositeActor) - Method in class org.kepler.ddp.director.DDPEngine
Make sure the container only contains DDP actors.
_checkParameters() - Method in class org.kepler.provenance.sql.SQLRecording
Check parameters before (re)connecting to database or workflow.
_checkPort(Port) - Method in class ptolemy.actor.IORelation
Throw an exception if the specified port cannot be linked to this relation (is not of class IOPort).
_checkPort(Port) - Method in class ptolemy.actor.TypedIORelation
Throw an exception if the specified port cannot be linked to this relation (is not of class TypedIOPort).
_checkPort(Port) - Method in class ptolemy.domains.modal.kernel.Transition
Throw an IllegalActionException if the port cannot be linked to this transition.
_checkPort(Port) - Method in class ptolemy.kernel.ComponentRelation
Throw an exception if the specified port cannot be linked to this relation (is not of class ComponentPort).
_checkPort(Port) - Method in class ptolemy.kernel.Relation
Throw an exception if the specified port cannot be linked to this relation.
_checkPrecision() - Method in class ptolemy.data.type.FixType
Check the precision.
_checkRangeOfTolerance(Token) - Method in class ptolemy.actor.lib.NonStrictTest
Check that the difference in exponents between the input and the tolerance is not greater than the precision of a Double.
_checkRelation(Relation, boolean) - Method in class ptolemy.actor.IORelation
Throw an exception if the specified relation is not an instance of IORelation or if it does not have the same width as this relation.
_checkRelation(Relation, boolean) - Method in class ptolemy.actor.TypedIORelation
Throw an exception if the specified relation is not an instance of TypedIORelation.
_checkRelation(Relation, boolean) - Method in class ptolemy.kernel.ComponentRelation
Throw an exception if the specified relation is not an instance of ComponentRelation.
_checkRelation(Relation, boolean) - Method in class ptolemy.kernel.Relation
Check that this relation is compatible with the specified relation.
_checkSameDimension(String, Complex[][], Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Check that the two matrix arguments are of the same dimension.
_checkSameDimension(String, double[][], double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Check that the two matrix arguments are of the same dimension.
_checkSameDimension(String, float[][], float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Check that the two matrix arguments are of the same dimension.
_checkSameDimension(String, Fraction[][], Fraction[][]) - Static method in class ptolemy.math.FractionMatrixMath
Check that the two matrix arguments are of the same dimension.
_checkSameDimension(String, int[][], int[][]) - Static method in class ptolemy.math.IntegerMatrixMath
Check that the two matrix arguments are of the same dimension.
_checkSameDimension(String, long[][], long[][]) - Static method in class ptolemy.math.LongMatrixMath
Check that the two matrix arguments are of the same dimension.
_checkServer(InetSocketAddress, String) - Method in class org.kepler.ddp.director.DDPEngine
Check if the DDP engine server is running.
_checkSquare(String, Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Check that the argument matrix is a square matrix.
_checkSquare(String, double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Check that the argument matrix is a square matrix.
_checkSquare(String, float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Check that the argument matrix is a square matrix.
_checkSquare(String, Fraction[][]) - Static method in class ptolemy.math.FractionMatrixMath
Check that the argument matrix is a square matrix.
_checkSquare(String, int[][]) - Static method in class ptolemy.math.IntegerMatrixMath
Check that the argument matrix is a square matrix.
_checkSquare(String, long[][]) - Static method in class ptolemy.math.LongMatrixMath
Check that the argument matrix is a square matrix.
_checkThrowableNameable(Object[], Throwable) - Method in class ptolemy.actor.gui.ActorGraphicalMessageHandler
Under certain circumstances, add a "Go To Actor" button to the options array.
_checkThrowableNameable(Object[], Throwable) - Method in class ptolemy.gui.UndeferredGraphicalMessageHandler
Return an updated array of button names if the throwable meets certain conditions.
_checkType(Token) - Method in class ptolemy.actor.TypedIOPort
Check that the specified token as well as the token in the default value, if specified, is compatible with the resolved type of this port.
_checkTypedIOPortContainer(Entity) - Method in class ptolemy.actor.TypedIOPort
Override the base class to ensure that the proposed container implements the TypedActor interface (the base class ensures that the container implements the Actor interface), is null, or is an EntityLibrary.
_checkTypesFromTo(TypedIOPort, List) - Method in class ptolemy.actor.lib.hoc.IterateOverArray
Check types from a source port to a group of destination ports, assuming the source port is connected to all the ports in the group of destination ports.
_checkTypesFromTo(TypedIOPort, List<TypedIOPort>) - Method in class ptolemy.actor.TypedCompositeActor
Check types from a source port to a group of destination ports, assuming the source port is connected to all the ports in the group of destination ports.
_checkWorkflowName() - Method in class org.kepler.provenance.sql.SQLRecording
Check validity of workflow name parameter.
_checkWorkflowName() - Method in class org.kepler.provenance.sql.SQLRecordingV8
Check validity of workflow name parameter.
_children - Variable in class ptolemy.data.expr.ASTPtRootNode
The children.
_childrenAreConstant(ASTPtRootNode) - Method in class ptolemy.data.expr.ParseTreeSpecializer
Return true if all of the children of this node are constant.
_chooseTransitions(List<Transition>, boolean, boolean, boolean, boolean) - Method in class ptolemy.domains.modal.kernel.FSMActor
Choose zero or more transitions enabled in the current state from the list of specified transitions.
_class - Variable in class ptolemy.data.ObjectToken
The class of the object.
_classDefinitionController - Variable in class ptolemy.vergil.actor.ActorViewerGraphController
The class definition controller.
_classes(Object) - Method in class ptolemy.vergil.tree.ClassAndEntityTreeModel
Return the list of classes, or an empty list if there are none.
_classLoader - Variable in class org.kepler.ddp.director.DDPEngine
The ClassLoader class for loading implementation class for DDP actors.
_cleanup() - Method in class org.kepler.spark.stub.KeplerPairFlatMapFunction
Free resources.
_cleanup() - Method in class org.kepler.spark.stub.ScriptEnginePairFlatMapFunction
Free resources.
_clear() - Method in class org.kepler.objectmanager.data.db.QBEditor
Clear the current contents.
_clear() - Method in class ptolemy.actor.gui.ModelFrame
Clear the current contents.
_clear() - Method in class ptolemy.actor.gui.PlotTableauFrame
Clear the current plot.
_clear() - Method in class ptolemy.actor.gui.PtolemyFrame
Clear the current contents.
_clear() - Method in class ptolemy.actor.gui.TextEditor
Clear the current contents.
_clear() - Method in class ptolemy.gui.Top
Clear the current contents.
_clearHighlights() - Method in class ptolemy.vergil.basic.SearchResultsDialog
Clear all highlights.
_cloneFixAttributeFields(NamedObj) - Method in class ptolemy.kernel.util.NamedObj
Fix the fields of the given object which point to Attributes.
_cloning - Variable in class ptolemy.moml.EntityLibrary
Indicate that we are cloning.
_close() - Method in class org.kepler.objectmanager.data.db.QBEditor
Override to query whether to apply the changes, if any.
_close() - Method in class org.sdm.spa.gui.UserInteractiveShell.ShellFrame
Overrides the base class to record the size and location of the frame.
_close() - Method in class org.sdm.spa.TextualInteractionShell.ShellFrame
Overrides the base class to record the size and location of the frame.
_close() - Method in class ptolemy.actor.gui.Console.ConsoleFrame
Redirect the standard output back when closing the frame.
_close() - Method in class ptolemy.actor.gui.ModelFrame
Close the window.
_close() - Method in class ptolemy.actor.gui.PtolemyFrame
Close the window.
_close() - Method in class ptolemy.actor.gui.run.RunLayoutFrame
Close the window.
_close() - Method in class ptolemy.actor.gui.TableauFrame
Close the window.
_close() - Method in class ptolemy.actor.gui.WelcomeWindow
Read the "Show this dialog on startup" checkbox, update the preferences if necessary and then call the super class and close this window.
_close() - Method in class ptolemy.actor.lib.gui.InteractiveDialog.DialogFrame
Overrides the base class to record the size and location of the frame.
_close() - Method in class ptolemy.actor.lib.gui.InteractiveShell.ShellFrame
Overrides the base class to record the size and location of the frame.
_close() - Method in class ptolemy.actor.lib.image.ImageDisplayJavaSE.ImageWindow
Close the window.
_close() - Method in class ptolemy.gui.Top
Close the window.
_close() - Method in class ptolemy.plot.PlotApplication
Exit the application.
_close() - Method in class ptolemy.plot.PlotFrame
Close the window.
_close() - Method in class ptolemy.vergil.actor.ActorGraphFrame
If the ptolemy model associated with this frame is a top-level composite actor, use its manager to stop it.
_close() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Override the base class to remove the listeners we have created when the frame closes.
_close() - Method in class ptolemy.vergil.basic.ExtendedGraphFrame
Invoke the close() method of the superclass and optionally print a debugging message.
_close() - Method in class ptolemy.vergil.modal.FSMGraphFrame
Close the window.
_close() - Method in class ptolemy.vergil.toolbox.TextEditorForStringAttributes
Override to query whether to apply the changes, if any.
_codeBook - Variable in class ptolemy.actor.lib.comm.HuffmanBasic
The huffman code book.
_colors - Static variable in class ptolemy.plot.PlotBox
The default colors, by data set.
_columns(Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Return the number of columns of a matrix.
_columns(double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Return the number of columns of a matrix.
_columns(float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Return the number of columns of a matrix.
_columns(Fraction[][]) - Static method in class ptolemy.math.FractionMatrixMath
Return the number of columns of a matrix.
_columns(int[][]) - Static method in class ptolemy.math.IntegerMatrixMath
Return the number of columns of a matrix.
_columns(long[][]) - Static method in class ptolemy.math.LongMatrixMath
Return the number of columns of a matrix.
_combineHostAndPort(String, String) - Method in class org.kepler.util.sql.DatabaseType
 
_commandFlags - Variable in class ptolemy.actor.gui.CompositeActorSimpleApplication
The command-line options that are either present or not.
_commandFlags - Variable in class ptolemy.actor.gui.MoMLSimpleStatisticalApplication
The command-line options that are either present or not.
_commandFlagsWithDescriptions - Variable in class ptolemy.actor.gui.ConfigurationApplication
The command-line options that are either present or not.
_commandOptions - Variable in class ptolemy.actor.gui.CompositeActorSimpleApplication
The command-line options that take arguments.
_commandOptions - Static variable in class ptolemy.actor.gui.ConfigurationApplication
The command-line options that take arguments.
_commandOptions - Variable in class ptolemy.actor.gui.MoMLSimpleStatisticalApplication
The command-line options that take arguments.
_commandOptions - Static variable in class ptolemy.vergil.VergilApplication
The command-line options that take arguments.
_commandTemplate - Variable in class ptolemy.actor.gui.CompositeActorSimpleApplication
The form of the command line.
_commandTemplate - Variable in class ptolemy.actor.gui.ConfigurationApplication
The form of the command line.
_commandTemplate - Variable in class ptolemy.actor.gui.MoMLSimpleStatisticalApplication
The form of the command line.
_commonKeyValueTypes - Static variable in interface org.kepler.ddp.actor.pattern.DDPPatternActor
Some common key value types for inputs and outputs.
_commonLength(Complex[], Complex[], String) - Static method in class ptolemy.math.ComplexArrayMath
Throw an exception if the two arrays are not of the same length, or if either array is null.
_commonLength(double[], double[], String) - Static method in class ptolemy.math.DoubleArrayMath
Throw an exception if the two arrays are not of the same length, or if either array is null.
_commonLength(float[], float[], String) - Static method in class ptolemy.math.FloatArrayMath
Throw an exception if the two arrays are not of the same length, or if either array is null.
_commonLength(Fraction[], Fraction[], String) - Static method in class ptolemy.math.FractionArrayMath
Throw an exception if the two arrays are not of the same length, or if either array is null.
_commonLength(int[], int[], String) - Static method in class ptolemy.math.IntegerArrayMath
Throw an exception if the two arrays are not of the same length, or if either array is null.
_commonLength(long[], long[], String) - Static method in class ptolemy.math.LongArrayMath
Throw an exception if the two arrays are not of the same length, or if either array is null.
_compare(StructuredType) - Method in class ptolemy.data.type.ArrayType
Compare this type with the specified type.
_compare(StructuredType) - Method in class ptolemy.data.type.FixType
Compare this type with the specified type.
_compare(StructuredType) - Method in class ptolemy.data.type.FunctionType
Compare this type with the specified type.
_compare(StructuredType) - Method in class ptolemy.data.type.MatrixType
Compare this type with the specified type.
_compare(StructuredType) - Method in class ptolemy.data.type.ObjectType
Compare this type with the specified type.
_compare(StructuredType) - Method in class ptolemy.data.type.RecordType
Compare this type with the specified type.
_compare(StructuredType) - Method in class ptolemy.data.type.StructuredType
Compare this type with the specified type.
_compare(StructuredType) - Method in class ptolemy.data.type.TupleType
Compare this type with the specified type.
_compare(StructuredType) - Method in class ptolemy.data.type.UnionType
Compare this type with the specified type.
_compoundEdit - Variable in class ptolemy.gui.UndoListener
A compound undo edit, or null if none is progress.
_compute() - Method in class ptolemy.graph.analysis.strategy.AllEdgeSingleSourceLongestPathStrategy
The computation associated with this analyzer.
_compute() - Method in class ptolemy.graph.analysis.strategy.CachedStrategy
Perform the graph analysis and return the resulting value.
_compute() - Method in class ptolemy.graph.analysis.strategy.ClusterNodesTransformerStrategy
The computation associated with this strategy.
_compute() - Method in class ptolemy.graph.analysis.strategy.FloydWarshallAllPairShortestPathStrategy
Compute the all pair shortest path of the graph in the form of two dimensional array (matrix).
_compute() - Method in class ptolemy.graph.analysis.strategy.FloydWarshallCycleExistenceStrategy
The computation associated with the Floyd-Warshall algorithm.
_compute() - Method in class ptolemy.graph.analysis.strategy.FloydWarshallNegativeLengthCycleStrategy
The computation associated with the Floyd-Warshall algorithm.
_compute() - Method in class ptolemy.graph.analysis.strategy.FloydWarshallStrategy
Basic computation performed by all the analysis implementing a floyd-warshall like analysis on a given graph.
_compute() - Method in class ptolemy.graph.analysis.strategy.FloydWarshallTransitiveClosureStrategy
The computation associated with the Floyd-Warshall algorithm.
_compute() - Method in class ptolemy.graph.analysis.strategy.FloydWarshallZeroLengthCycleStrategy
The computation associated with the Floyd-Warshall algorithm.
_compute() - Method in class ptolemy.graph.analysis.strategy.KarpCycleMeanStrategy
 
_compute() - Method in class ptolemy.graph.analysis.strategy.MirrorTransformerStrategy
The computation associated with this strategy.
_compute() - Method in class ptolemy.graph.analysis.strategy.ParhiMaximumProfitToCostRatioStrategy
 
_compute() - Method in class ptolemy.graph.analysis.strategy.SelfLoopStrategy
Compute the self-loop edges in the graph in the form of a collection.
_compute() - Method in class ptolemy.graph.analysis.strategy.SinkNodeStrategy
Compute the sink nodes in the graph in the form of a collection.
_compute() - Method in class ptolemy.graph.analysis.strategy.SourceNodeStrategy
Compute the source nodes in the graph in the form of a collection.
_computeActorDepth() - Method in class ptolemy.actor.util.CausalityInterfaceForComposites
Compute the depth of ports and actors.
_computeEdgeWeight(IOPort, IOPort) - Method in class ptolemy.actor.GraphReader
Determine the weight to be assigned to the weighted graph edge that represents a given connection in a Ptolemy II model.
_computeMaximumFirings(Actor) - Method in class ptolemy.domains.sdf.kernel.SDFScheduler
Determine the number of times the given actor can fire, based on the number of tokens that are present on its inputs.
_computeNodeWeight(Actor) - Method in class ptolemy.actor.GraphReader
Determine the weight to be assigned to the weighted graph node that represents a given actor.
_concatStringArrays(String[][], String[][]) - Method in class ptolemy.gui.BasicJApplet
Concatenate two parameter info string arrays and return the result.
_confErrorStr - Variable in class org.sdm.spa.SoaplabAnalysis
 
_confErrorStr - Variable in class org.sdm.spa.SoaplabChooseOperation
 
_confErrorStr - Variable in class org.sdm.spa.SoaplabChooseResultType
 
_confErrorStr - Variable in class org.sdm.spa.SoaplabServiceStarter
 
_configDirStr - Variable in class org.kepler.ddp.director.DDPEngine
DDP Engine configuration directory.
_configuration - Variable in class org.kepler.spark.operator.Operator
Configuration parameters.
_configuration - Variable in class ptolemy.actor.gui.ConfigurationApplication
The configuration model of this application.
_configuration - Variable in class ptolemy.actor.gui.PtolemyDialog
The configuration that corresponds with this dialog.
_configuration - Variable in class ptolemy.vergil.actor.LinkController
The configuration.
_configuration - Variable in class ptolemy.vergil.basic.GetDocumentationAction
The configuration.
_configuration - Variable in class ptolemy.vergil.basic.NamedObjController
The configuration.
_configuration - Variable in class ptolemy.vergil.modal.TransitionController
The configuration.
_configurationUsage(String, String[][], String[]) - Method in class ptolemy.actor.gui.ConfigurationApplication
Return a string summarizing the command-line arguments, including any configuration directories in a base path, typically "ptolemy/configs".
_configurationUsage(String, String[][], String[][]) - Method in class ptolemy.actor.gui.ConfigurationApplication
Return a string summarizing the command-line arguments, including any configuration directories in a base path, typically "ptolemy/configs".
_configureAction - Static variable in class ptolemy.vergil.actor.LinkController
The configure action, which handles edit parameters requests.
_configureAction - Static variable in class ptolemy.vergil.basic.BasicGraphController
The configure action.
_configureAction - Static variable in class ptolemy.vergil.basic.ParameterizedNodeController
The configure action, which handles edit parameters requests.
_configureAction - Static variable in class ptolemy.vergil.modal.TransitionController
The configure action, which handles edit parameters requests.
_configureDone - Variable in class ptolemy.actor.LazyTypedCompositeActor
Indicate whether data given by configure() has been processed.
_configureDone - Variable in class ptolemy.moml.EntityLibrary
Indicate whether data given by configure() has been processed.
_configureFrame(TabbedKeplerGraphFrame, CompositeEntity) - Method in class org.kepler.gui.frame.CaseGraphTableau
Configure the frame for the opened Case actor.
_configureFrame(TabbedKeplerGraphFrame, CompositeEntity) - Method in class org.kepler.gui.frame.MultiCompositeTableau
Configure the frame for the opened multi composite model.
_configureFrame(TabbedKeplerGraphFrame, CompositeEntity) - Method in class org.kepler.gui.frame.TabbedKeplerGraphTableau
Configure the frame for the opened model.
_configureMenuFactory - Variable in class ptolemy.vergil.actor.LinkController
The submenu for configure actions.
_configureMenuFactory - Static variable in class ptolemy.vergil.basic.BasicGraphController
The submenu for configure actions.
_configureMenuFactory - Variable in class ptolemy.vergil.basic.ParameterizedNodeController
The submenu for configure actions.
_configureMenuFactory - Variable in class ptolemy.vergil.modal.TransitionController
The submenu for configure actions.
_configureSource - Variable in class ptolemy.moml.EntityLibrary
URL specified to the configure() method.
_configureTableau(Tableau) - Method in class ptolemy.actor.gui.TableauFactory
Configure the given tableau with the configuration data attached to this tableau factory, if any.
_configureText - Variable in class ptolemy.moml.EntityLibrary
Text specified to the configure() method.
_confirmFile(Entity, File) - Method in class ptolemy.actor.gui.TableauFrame
Confirm that writing the specified model to the specified file is OK.
_connect(Edge, Node) - Method in class ptolemy.graph.DirectedGraph
Connect an edge to a node by appropriately modifying the adjacency information associated with the node.
_connect(Edge, Node) - Method in class ptolemy.graph.Graph
Connect an edge to a node by appropriately modifying the adjacency information associated with the node.
_CONNECT_TIMEOUT - Static variable in class org.kepler.ddp.director.DDPEngine
Timeout when seeing if server is running.
_connected - Variable in class ptolemy.plot.plotml.PlotMLParser
The default connected state.
_connectEdge(Edge) - Method in class ptolemy.graph.Graph
Connect a given edge in this graph.
_connectedSubGraph(Node, DirectedGraph, Collection) - Method in class ptolemy.graph.DirectedGraph
Given a node, get all the edges and nodes that are connected to it directly and/or indirectly.
_connectInitialize(String) - Method in class org.kepler.util.sql.DatabaseType
Initialize data structures and load driver before connecting.
_connection - Variable in class org.kepler.util.sql.DatabaseType
The JDBC connection object.
_connectionClosed(String) - Method in class org.kepler.webview.actor.WebViewAttribute
 
_connectionOpened(String) - Method in class org.kepler.webview.actor.WebViewAttribute
 
_constantLimit - Variable in class ptolemy.actor.IOPort
The limit of the number of constant values to return instead of the received tokens.
_constantToken - Variable in class ptolemy.actor.IOPort
The constant value to return instead of the received tokens.
_constantTokensSent - Variable in class ptolemy.actor.IOPort
The number of constant tokens that have been sent since the last call to _setConstant().
_constraints - Variable in class ptolemy.gui.Query
Standard constraints for use with _grid.
_constructLabel(String) - Method in class ptolemy.gui.Query
Construct a lable.
_consultTimeRegulators(Time) - Method in class ptolemy.actor.Director
Consult all attributes contained by the container of this director that implement the TimeRegulator interface, if any, and return the smallest time returned by those regulators.
_containedDecorators() - Method in class ptolemy.kernel.CompositeEntity
Return a list of decorators contained by this object.
_containedDecorators() - Method in class ptolemy.kernel.util.NamedObj
Return a list of decorators contained by this object.
_containedTypeConstraints() - Method in class ptolemy.actor.TypedAtomicActor
Collect all type constraints from contained Typeables (ports, variables, and parameters).
_containedTypeConstraints() - Method in class ptolemy.domains.de.lib.MostRecent
Adds two inequalities to the set returned by the overridden method that together constrain the input to be equal to the type of the initial value.
_containedTypeConstraints() - Method in class ptolemy.domains.de.lib.Previous
Adds to the set of inequalities returned by the overridden method a constraint that requires the initial value to be less than or equal to the type of the output.
_container - Variable in class org.kepler.ddp.director.DDPEngine
The container of this director.
_container - Variable in class ptolemy.actor.gui.run.PtolemyFormEditor
The container.
_container - Variable in class ptolemy.actor.lib.gui.PlotterBaseJavaSE
Container into which this plot should be placed.
_container - Variable in class ptolemy.actor.lib.image.ImageDisplayJavaSE
The container for the image display, set by calling place().
_containerFullName - Variable in class org.kepler.provenance.Recording
The full name of the provenance recorder's container.
_containerLayout - Variable in class ptolemy.actor.gui.run.PtolemyFormEditor
The layout manager.
_containerLSID - Variable in class org.kepler.provenance.Recording
The LSID of the containing workflow.
_containerName - Variable in class org.kepler.provenance.Recording
The name of the containing workflow.
_containerToBe - Variable in class ptolemy.vergil.icon.EditorIcon
The container to be eventually the container for this icon.
_context - Variable in class org.kepler.spark.actor.SparkBaseActor
The spark context.
_context - Variable in class org.kepler.spark.operator.DataSource
The Spark context.
_context - Static variable in class ptolemy.gui.UndeferredGraphicalMessageHandler
The context.
_controller - Variable in class ptolemy.domains.modal.modal.ModalModel
The FSM controller.
_controller - Variable in class ptolemy.vergil.actor.ActorGraphFrame
The graph controller.
_controller - Variable in class ptolemy.vergil.modal.FSMGraphFrame
The controller.
_controllerBlocked(BranchController) - Method in class ptolemy.actor.process.CompositeProcessDirector
Register that the specified controller is blocked.
_controllerUnBlocked(BranchController) - Method in class ptolemy.actor.process.CompositeProcessDirector
Unregister the specified controller as being no longer blocked.
_convertInputToJson(Token) - Method in class org.kepler.webview.actor.WebViewAttribute
 
_convertOutputToToken(String, Type) - Method in class org.kepler.webview.actor.WebView
 
_convertResult(Object) - Method in class ptolemy.graph.analysis.strategy.CachedStrategy
Convert the cached result (CachedStrategy.getCachedResult()) to a form that is suitable for the client to access (via CachedStrategy._result()).
_convertResult() - Method in class ptolemy.graph.analysis.strategy.SelfLoopStrategy
Return the result of this analysis (collection of self-loop edges) in a form that cannot be modified.
_convertResult() - Method in class ptolemy.graph.analysis.strategy.SinkNodeStrategy
Return the result of this analysis (collection of sink nodes) in a form that cannot be modified.
_convertResult() - Method in class ptolemy.graph.analysis.strategy.SourceNodeStrategy
Return the result of this analysis (collection of source nodes) in a form that cannot be modified.
_convertToClassAction - Variable in class ptolemy.vergil.actor.ActorInstanceController
The action that handles creating an instance from a class.
_convertToInstanceAction - Variable in class ptolemy.vergil.actor.ClassDefinitionController
The action that handles converting a class to an instance.
_copyAction - Variable in class ptolemy.vergil.basic.BasicGraphFrame
The copy action.
_copyChangeRequestList() - Method in class ptolemy.kernel.util.NamedObj
Return a copy of the current list of change requests, or return null if there aren't any pending change requests.
_copyOfCategoryExponents() - Method in class ptolemy.data.ScalarToken
Return a copy of the unit category exponents array.
_copyParameters(DDPPatternActor, DDPPatternActor) - Method in class org.kepler.ddp.director.DDPEngine
Copy the workflow parameters from one sub-workflow to another including the parameters in all the containers of the source.
_copyTo(File, String, boolean) - Method in class org.kepler.ssh.GsiSshExec
Copy _one_ local file to a remote directory Input: file of type File (which can be a directory) Input must not have wildcards. targetPath is either a directory or filename
_copyTo(File, String, boolean) - Method in class org.kepler.ssh.RemoteExec
 
_copyTo(File, String, boolean) - Method in class org.kepler.ssh.SshExec
Copy _one_ local file to a remote directory Input: file of type File (which can be a directory) Input must not have wildcards. targetPath is either a directory or filename
_count - Variable in class ptolemy.actor.lib.MovingAverage
Count of the number of inputs received, bounded by the size of the _data array.
_countUnfulfilledInputs(Actor, List, boolean) - Method in class ptolemy.domains.sdf.kernel.SDFScheduler
Count the number of input ports in the given actor that must be fulfilled before the actor can fire.
_createAction() - Method in class ptolemy.actor.gui.properties.ActionGUIProperty
Create the action to be used in this property.
_createActorInstance(String) - Method in class org.kepler.scriptengine.Java
Create an instance of the actor object in the script.
_createActorInstance(String) - Method in class org.kepler.scriptengine.JRuby
Create an instance of the actor object in the script.
_createActorInstance(String) - Method in class org.kepler.scriptengine.Jython
Create an instance of the actor object in the script.
_createActorInstance(String) - Method in class org.kepler.scriptengine.ScriptEngineActor
Create an instance of the actor object in the script.
_createComponent() - Method in class ptolemy.actor.gui.properties.Button
Create a new Java Swing component.
_createComponent() - Method in class ptolemy.actor.gui.properties.ComboBox
Create a new JComboBox component.
_createComponent() - Method in class ptolemy.actor.gui.properties.ComboBox.Item
Create a new Java Swing component.
_createComponent() - Method in class ptolemy.actor.gui.properties.GUIProperty
Create a new Java Swing component.
_createComponent() - Method in class ptolemy.actor.gui.properties.Panel
Create a new JPanel component.
_createComponent() - Method in class ptolemy.actor.gui.properties.Separator
Create a new JSeparator component.
_createComponent() - Method in class ptolemy.actor.gui.properties.ToolBar
Create a new Java Swing component.
_createControllers() - Method in class ptolemy.vergil.actor.ActorEditorGraphController
Create the controllers for nodes in this graph.
_createControllers() - Method in class ptolemy.vergil.actor.ActorViewerGraphController
Create the controllers for nodes in this graph.
_createControllers() - Method in class ptolemy.vergil.basic.BasicGraphController
Create the controllers for nodes in this graph.
_createControllers() - Method in class ptolemy.vergil.basic.WithIconGraphController
Create the controllers for nodes in this graph.
_createControllers() - Method in class ptolemy.vergil.icon.EditIconGraphController
Create the controllers for nodes in this graph.
_createControllers() - Method in class ptolemy.vergil.modal.FSMGraphController
Create the controllers for nodes in this graph.
_createControllers() - Method in class ptolemy.vergil.modal.FSMViewerGraphController
Create the controllers for nodes in this graph.
_createDefaultBackgroundFigure() - Method in class ptolemy.vergil.icon.EditorIcon
Create a new default background figure, which is a white box.
_createDefaultBackgroundFigure() - Method in class ptolemy.vergil.icon.ValueIcon
Create a new default background figure, which is a bullet.
_createDefaultConfiguration() - Method in class ptolemy.actor.gui.ConfigurationApplication
Return a default Configuration, or null to do without one.
_createDefaultConfiguration() - Method in class ptolemy.actor.gui.PtExecuteApplication
Return a default Configuration, which in this case is given by the MoML file ptolemy/configs/runConfiguration.xml.
_createDefaultConfiguration() - Method in class ptolemy.actor.gui.PtolemyApplication
Return a default Configuration, which in this case is given by the MoML file ptolemy/configs/runPanelConfiguration.xml.
_createDefaultConfiguration() - Method in class ptolemy.vergil.VergilApplication
Return a default Configuration.
_createDefaultLibrary(Workspace) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Create the default library to use if an entity has no LibraryAttribute.
_createDefaultLibrary(Workspace) - Method in class ptolemy.vergil.icon.EditIconFrame
Create the default library to use if an entity has no LibraryAttribute.
_createDirector() - Method in class org.kepler.ddp.actor.ExecutionChoice
Create a director.
_createDirector() - Method in class ptolemy.actor.lib.hoc.Case
Create a director.
_createdNewFrame - Variable in class org.kepler.gui.frame.TabbedKeplerGraphTableau
If true, a new frame was created in createGraphFrame().
_createdNewRandomNumberGenerator() - Method in class ptolemy.actor.lib.colt.ColtBeta
Method that is called after _randomNumberGenerator is changed.
_createdNewRandomNumberGenerator() - Method in class ptolemy.actor.lib.colt.ColtBinomial
Method that is called after _randomNumberGenerator is changed.
_createdNewRandomNumberGenerator() - Method in class ptolemy.actor.lib.colt.ColtBinomialSelector
Create a new random number generator.
_createdNewRandomNumberGenerator() - Method in class ptolemy.actor.lib.colt.ColtBreitWigner
Method that is called after _randomNumberGenerator is changed.
_createdNewRandomNumberGenerator() - Method in class ptolemy.actor.lib.colt.ColtChiSquare
Method that is called after _randomNumberGenerator is changed.
_createdNewRandomNumberGenerator() - Method in class ptolemy.actor.lib.colt.ColtExponential
Method that is called after _randomNumberGenerator is changed.
_createdNewRandomNumberGenerator() - Method in class ptolemy.actor.lib.colt.ColtExponentialPower
Method that is called after _randomNumberGenerator is changed.
_createdNewRandomNumberGenerator() - Method in class ptolemy.actor.lib.colt.ColtGamma
Method that is called after _randomNumberGenerator is changed.
_createdNewRandomNumberGenerator() - Method in class ptolemy.actor.lib.colt.ColtHyperGeometric
Method that is called after _randomNumberGenerator is changed.
_createdNewRandomNumberGenerator() - Method in class ptolemy.actor.lib.colt.ColtLogarithmic
Method that is called after _randomNumberGenerator is changed.
_createdNewRandomNumberGenerator() - Method in class ptolemy.actor.lib.colt.ColtNegativeBinomial
Method that is called after _randomNumberGenerator is changed.
_createdNewRandomNumberGenerator() - Method in class ptolemy.actor.lib.colt.ColtNormal
Method that is called after _randomNumberGenerator is changed.
_createdNewRandomNumberGenerator() - Method in class ptolemy.actor.lib.colt.ColtPoisson
Method that is called after _randomNumberGenerator is changed.
_createdNewRandomNumberGenerator() - Method in class ptolemy.actor.lib.colt.ColtPoissonSlow
Method that is called after _randomNumberGenerator is changed.
_createdNewRandomNumberGenerator() - Method in class ptolemy.actor.lib.colt.ColtRandomSource
Method that is called after _randomNumberGenerator is changed.
_createdNewRandomNumberGenerator() - Method in class ptolemy.actor.lib.colt.ColtStudentT
Method that is called after _randomNumberGenerator is changed.
_createdNewRandomNumberGenerator() - Method in class ptolemy.actor.lib.colt.ColtVonMises
Method that is called after _randomNumberGenerator is changed.
_createdNewRandomNumberGenerator() - Method in class ptolemy.actor.lib.colt.ColtZeta
Method that is called after _randomNumberGenerator is changed.
_createDocument(String) - Static method in class ptolemy.actor.gui.TextEffigy
Create a syntax document, if possible, and otherwise a plain document.
_createEdgeRenderer() - Method in class ptolemy.vergil.modal.TransitionController
Create an edge renderer specifically for instances of Transition.
_createEmptyConfiguration() - Method in class ptolemy.actor.gui.ConfigurationApplication
Return a default Configuration to use when there are no command-line arguments, or null to do without one.
_createEmptyConfiguration() - Method in class ptolemy.actor.gui.PtExecuteApplication
Throw an exception.
_createEmptyConfiguration() - Method in class ptolemy.actor.gui.PtolemyApplication
Return a default Configuration to use when there are no command-line arguments, which in this case is the same as the default configuration given by _createDefaultConfiguration, but with the additional contents of the file ptolemy/configs/runWelcomeWindow.xml.
_createEmptyConfiguration() - Method in class ptolemy.vergil.VergilApplication
Return a default Configuration to use when there are no command-line arguments.
_createExtendedButtons(JPanel) - Method in class ptolemy.actor.gui.OpenInstanceDialog
Do nothing.
_createExtendedButtons(JPanel) - Method in class ptolemy.actor.gui.PortConfigurerDialog
 
_createExtendedButtons(JPanel) - Method in class ptolemy.actor.gui.PtolemyDialog
Created extended buttons.
_createExtendedButtons(JPanel) - Method in class ptolemy.vergil.basic.SearchResultsDialog
Create buttons.
_createExtendedButtons(JPanel) - Method in class ptolemy.vergil.unit.UnitConstraintsDialog
 
_createExtendedButtons(JPanel) - Method in class ptolemy.vergil.unit.UnitSolverDialog
 
_createFileMenuItems() - Method in class ptolemy.actor.gui.PlotTableauFrame
Create the items in the File menu's Export section This method adds a menu items to export images of the plot in GIF, PNG, and possibly PDF.
_createFileMenuItems() - Method in class ptolemy.actor.gui.TextEditor
Create the items in the File menu's Export section This method adds a menu items to export images of the plot in GIF, PNG, and possibly PDF.
_createFileMenuItems() - Method in class ptolemy.gui.Top
Create the items in the File menu.
_createFileMenuItems() - Method in class ptolemy.vergil.actor.ActorGraphFrame
Create the items in the File menu.
_createFileMenuItems() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Create the items in the File menu's Export section This method adds a menu items to export images of the plot in GIF, PNG, and possibly PDF.
_createFileMenuItems() - Method in class ptolemy.vergil.modal.FSMGraphFrame
Create the items in the File menu.
_createGenerator() - Method in class ptolemy.actor.lib.colt.ColtRandomSource
Create the random number generator using current parameter values.
_createGenerator() - Method in class ptolemy.actor.lib.RandomSource
Create the random number generator using current parameter values.
_createGraphPane(NamedObj) - Method in class org.kepler.gui.frame.TabbedKeplerGraphFrame
Create a new graph pane.
_createGraphPane(NamedObj) - Method in class ptolemy.vergil.actor.ActorGraphFrame
Create a new graph pane.
_createGraphPane(NamedObj) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Create a new graph pane.
_createGraphPane(NamedObj) - Method in class ptolemy.vergil.icon.EditIconFrame
Create a new graph pane.
_createGraphPane(NamedObj) - Method in class ptolemy.vergil.modal.CaseGraphFrame
Create a new graph pane.
_createGraphPane(NamedObj) - Method in class ptolemy.vergil.modal.FSMGraphFrame
Create a new graph pane.
_createGraphPane(NamedObj) - Method in class ptolemy.vergil.modal.ia.InterfaceAutomatonGraphFrame
Create a new graph pane.
_createHierarchyAction - Variable in class ptolemy.vergil.actor.ActorGraphFrame
The action for creating a level of hierarchy.
_createIdentity(int) - Method in class ptolemy.data.BooleanMatrixToken
Return an new identity matrix with the specified dimension.
_createImageMap(File) - Method in class ptolemy.vergil.basic.export.html.ExportHTMLAction
Create the image map.
_createIndexes - Variable in class org.kepler.util.sql.DatabaseType
If false, do not create indexes.
_createInputModel() - Method in class org.kepler.sms.actors.MergeEditorDialog
Creates and initializes the default tree model of the input tree
_createInputPort() - Method in class ptolemy.actor.lib.Subscriber
Create an input port.
_createInputPort() - Method in class ptolemy.actor.lib.SubscriptionAggregator
Create an input port.
_createInstanceAction - Variable in class ptolemy.vergil.actor.ClassDefinitionController
The action that handles creating an instance from a class.
_createJobDirectory() - Method in class org.kepler.ddp.director.DDPEngine
Create a new directory for this job.
_createModel() - Method in class org.kepler.sms.gui.PortSemanticTypeEditorPane
This is called in the composite dialog Need to figure out how this should look ...
_createModel(Workspace) - Method in class ptolemy.actor.gui.MoMLApplet
Read the model from the modelURL applet parameter and filter out any graphical classes that might require us to have diva.jar in the classpath.
_createModel(Workspace, boolean) - Method in class ptolemy.actor.gui.MoMLApplet
Read the model from the modelURL applet parameter.
_createModel(Workspace) - Method in class ptolemy.actor.gui.PtolemyApplet
Create a model.
_createModel(Workspace) - Method in class ptolemy.vergil.MoMLViewerApplet
Read the model from the modelURL applet parameter and do not filter out any graphical classes.
_createModel(Workspace) - Method in class ptolemy.vergil.TypeAnimatorApplet
Create the model.
_createOutputModel() - Method in class org.kepler.sms.actors.MergeEditorDialog
Creates and initializes the default tree model of the output tree
_createPlaceable(CompositeActor) - Method in class ptolemy.actor.gui.ModelPane
Place the placeable objects in the model in the display pane.
_createPortFunction(TypedIOPort) - Method in class org.kepler.ddp.actor.pattern.stub.CoGroupInput
Create a function used for setting the type for an output port.
_createPortFunction(TypedIOPort) - Method in class org.kepler.ddp.actor.pattern.stub.CrossInput
Create a function used for setting the type for an output port.
_createPortFunction(TypedIOPort) - Method in class org.kepler.ddp.actor.pattern.stub.MapInput
Create a function used for setting the type for an output port.
_createPortFunction(TypedIOPort) - Method in class org.kepler.ddp.actor.pattern.stub.MatchInput
Create a function used for setting the type for an output port.
_createPortFunction(TypedIOPort) - Method in class org.kepler.ddp.actor.pattern.stub.ReduceInput
Create a function used for setting the type for an output port.
_createPortFunction(TypedIOPort) - Method in class org.kepler.ddp.actor.pattern.stub.StubSourceActor
Create a function used for setting the type for an output port.
_createPreparedStatements() - Method in class org.kepler.provenance.sql.SQLQueryV8
Initialize the prepared statements.
_createPreparedStatements() - Method in class org.kepler.provenance.sql.SQLRecording
Initialize the prepared statements.
_createPreparedStatements() - Method in class org.kepler.provenance.sql.SQLRecordingV7
Initialize the prepared statements.
_createPreparedStatements() - Method in class org.kepler.provenance.sql.SQLRecordingV8
Initialize the prepared statements.
_createRecordToken(String[], Token[]) - Method in class ptolemy.data.OrderedRecordToken
 
_createRecordToken(String[], Token[]) - Method in class ptolemy.data.RecordToken
Create a new RecordToken.
_createRightComponent(NamedObj) - Method in class org.kepler.gui.frame.TabbedKeplerGraphFrame
Create the component that goes to the right of the library.
_createRightComponent(NamedObj) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Create the component that goes to the right of the library.
_createRightComponent(NamedObj) - Method in class ptolemy.vergil.modal.CaseGraphFrame
Create the component that goes to the right of the library.
_createRunControls(int) - Method in class ptolemy.actor.gui.PtolemyApplet
Deprecated.
Use the control applet parameter.
_createSchema() - Method in class org.kepler.provenance.sql.SQLRecording
Create a Schema to reflect the v6 schema.
_createSchema() - Method in class org.kepler.provenance.sql.SQLRecordingV7
Create a Schema to reflect the v7 schema.
_createSchema() - Method in class org.kepler.provenance.sql.SQLRecordingV8
Create a Schema to reflect the v8 schema.
_createSet() - Method in class ptolemy.data.OrderedRecordToken
Create a Set implementation appropriate for operations on this RecordToken.
_createSet() - Method in class ptolemy.data.RecordToken
Create a Set implementation appropriate for operations on this RecordToken Subclasses of RecordToken may return a different implementation.
_createSizeAttribute() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Create a SizeAttribute for the current model when it is being saved to a file.
_createSizeAttribute(NamedObj) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Create a SizeAttribute for a specific model when it is being saved to a file.
_createSubclassAction - Variable in class ptolemy.vergil.actor.ClassDefinitionController
The action that handles creating a subclass from a class.
_createView() - Method in class ptolemy.actor.gui.PtolemyApplet
Create a ModelPane to control execution of the model and display its results.
_createView() - Method in class ptolemy.domains.sdf.demo.HTVQ.HTVQApplet
Place the placeable objects in a customized panel.
_createView() - Method in class ptolemy.domains.sdf.demo.Sketch.SketchApplet
Create the shared plot and set it up based on the director parameters.
_createView() - Method in class ptolemy.vergil.MoMLViewerApplet
Override the base class to create a schematic view instead of a ModelPane.
_crs - Variable in class org.kepler.gis.actor.CRSActor
The coordinate reference system object.
_current - Variable in class ptolemy.actor.lib.Gaussian
The random number for the current iteration.
_current - Variable in class ptolemy.actor.lib.hoc.Case
The current refinement.
_currentCharData - Variable in class ptolemy.plot.plotml.PlotBoxMLParser
The current character data for the current element.
_currentdataset - Variable in class ptolemy.plot.compat.PxgraphParser
The current dataset, used for handling multiple files.
_currentdataset - Variable in class ptolemy.plot.Histogram
The current dataset.
_currentdataset - Variable in class ptolemy.plot.Plot
The current dataset.
_currentDataset - Variable in class ptolemy.plot.plotml.PlotMLParser
The current dataset number in a "dataset" element.
_currentExpression - Variable in class ptolemy.data.expr.Variable
Stores the expression used to set this variable.
_currentExternalEntity() - Method in class ptolemy.moml.MoMLParser
Get the the URI for the current external entity.
_currentExternalEntity() - Method in class ptolemy.plot.plotml.PlotBoxMLParser
Get the the URI for the current external entity.
_currentExternalEntity() - Method in class ptolemy.vergil.actor.DocManager
Get the the URI for the current external entity.
_currentInput - Variable in class ptolemy.domains.de.lib.TimedDelay
Deprecated.
Current input.
_currentInput - Variable in class ptolemy.domains.de.lib.Timer
Deprecated.
Current input.
_currentLine - Variable in class org.geon.FileToArray
Cache of most recently read data.
_currentLine - Variable in class org.geon.FileToString
Cache of most recently read data.
_currentLine - Variable in class ptolemy.actor.lib.io.LineReader
Cache of most recently read data.
_currentLocalReceiverMap - Variable in class ptolemy.domains.modal.kernel.FSMDirector
Map from input ports of the modal model to the local receivers for the current state.
_currentLocalReceivers(IOPort) - Method in class ptolemy.domains.modal.kernel.FSMDirector
Return the receivers contained by ports connected to the inside of the given input port and on the mode controller or the refinement of its current state.
_currentOutput - Variable in class ptolemy.domains.continuous.lib.ContinuousTimeDelay
Current output.
_currentOutput - Variable in class ptolemy.domains.de.lib.TimedDelay
Deprecated.
Current output.
_currentOutput - Variable in class ptolemy.domains.de.lib.Timer
Deprecated.
Current output.
_currentOutput - Variable in class ptolemy.domains.de.lib.VariableDelay
Deprecated.
Current output.
_currentPointCount - Variable in class ptolemy.plot.plotml.PlotMLParser
A count within the current dataset, in case no x value is given.
_currentState - Variable in class org.kepler.monitor.figure.StateFigure
Current state associated with this monitor. null by default
_currentState - Variable in class ptolemy.domains.modal.kernel.FSMActor
Current state.
_customizeMenu - Variable in class ptolemy.actor.gui.run.CustomizableRunFrame
Customize menu for this frame.
_customTypeConstraints() - Method in class org.kepler.actor.RecordOperation
Return custom type constraints specified by the RecordOperationFunction class.
_customTypeConstraints() - Method in class org.kepler.ddp.actor.pattern.DDPDataSource
If using the default type constraints, return the custom type constraints from the parent class.
_customTypeConstraints() - Method in class org.kepler.ddp.actor.pattern.stub.StubSourceActor
Return the type constraints of this actor.
_customTypeConstraints() - Method in class org.sdm.spa.ArrayPermute
Return the type constraints of this actor.
_customTypeConstraints() - Method in class ptolemy.actor.lib.AddSubtract
Set the plus port to be greater than or equal to the output port if backward type inference is enabled.
_customTypeConstraints() - Method in class ptolemy.actor.lib.ArrayElement
Force the type of the input to be an array with fields of a type greater than or equal to the type of the output port.
_customTypeConstraints() - Method in class ptolemy.actor.lib.ArrayToElements
Add a type constraint for backward type inference that forces the input to be an array of which the elements have a type greater than or equal to the output port.
_customTypeConstraints() - Method in class ptolemy.actor.lib.conversions.TokenToExpression
Set the input port greater than or equal to BaseType.GENERAL in case backward type inference is enabled and the input port has no type declared.
_customTypeConstraints() - Method in class ptolemy.actor.lib.Discard
Set the input port greater than or equal to BaseType.GENERAL in case backward type inference is enabled and the input port has no type declared.
_customTypeConstraints() - Method in class ptolemy.actor.lib.gui.Display
Set the input port greater than or equal to BaseType.GENERAL in case backward type inference is enabled and the input port has no type declared.
_customTypeConstraints() - Method in class ptolemy.actor.lib.gui.InteractiveDialog
Set the input port greater than or equal to BaseType.GENERAL in case backward type inference is enabled and the input port has no type declared.
_customTypeConstraints() - Method in class ptolemy.actor.lib.gui.InteractiveShell
Set the input port greater than or equal to BaseType.GENERAL in case backward type inference is enabled and the input port has no type declared.
_customTypeConstraints() - Method in class ptolemy.actor.lib.gui.MonitorValue
Set the input port greater than or equal to BaseType.GENERAL in case backward type inference is enabled and the input port has no type declared.
_customTypeConstraints() - Method in class ptolemy.actor.lib.NonStrictTest
Set the input port to be greater than or equal to BaseType.GENERAL in case backward type inference is enabled and the input port has no type declared.
_customTypeConstraints() - Method in class ptolemy.actor.lib.RecordAssembler
Set up and return two type constraints.
_customTypeConstraints() - Method in class ptolemy.actor.lib.RecordDisassembler
Set up and return three type constraints.
_customTypeConstraints() - Method in class ptolemy.actor.lib.RecordUpdater
Return the type constraints of this actor.
_customTypeConstraints() - Method in class ptolemy.actor.lib.RunningMaximum
Set input ≤ output, input ≤ Scalar.
_customTypeConstraints() - Method in class ptolemy.actor.lib.RunningMinimum
Set input ≤ output, input ≤ Scalar.
_customTypeConstraints() - Method in class ptolemy.actor.lib.SetVariable
Return a constraint requiring that if there is a specified variable to modify, the type of that variable is less than or equal to the type of the output port.
_customTypeConstraints() - Method in class ptolemy.actor.lib.Source
Set the input port greater than or equal to BaseType.GENERAL in case backward type inference is enabled and the input port has no type declared.
_customTypeConstraints() - Method in class ptolemy.actor.lib.TypeTest
Do not participate in backward type inference, return null.
_customTypeConstraints() - Method in class ptolemy.actor.lib.UnionDisassembler
Set up and returns two type constraints.
_customTypeConstraints() - Method in class ptolemy.actor.lib.UnionMerge
Set up and return two type constraints.
_customTypeConstraints() - Method in class ptolemy.actor.TypedAtomicActor
Empty stub to be used for setting up custom type constraints for subclasses of this actor.
_customTypeConstraints() - Method in class ptolemy.domains.continuous.lib.ZeroOrderHold
Return a constraint that requires the type of the defaultValue parameter to be less than or equal to the type of the output port.
_customTypeConstraints() - Method in class ptolemy.domains.sdf.lib.ArrayToSequence
Add a type constraint for backward type inference that forces the input to be an array of which the elements have a type greater than or equal to the output port.
_customTypeConstraints() - Method in class ptolemy.domains.sdf.lib.FIR
Set the output to be ≥ the monotonic function of the input port type.
_customTypeConstraints() - Method in class ptolemy.domains.sdf.lib.SampleDelay
Sets up backward type constraint that sets output ≤ input if backward type inference is enabled.
_cutAction - Variable in class ptolemy.vergil.basic.BasicGraphFrame
The cut action.
_cycleCount - Variable in class ptolemy.actor.lib.Clock
Deprecated.
The count of cycles executed so far, or 0 before the start.
_cycleCount - Variable in class ptolemy.actor.lib.DiscreteClock
The count of cycles executed so far, or 0 before the start.
_cycleStartTime - Variable in class ptolemy.actor.lib.Clock
Deprecated.
The most recent cycle start time.
_cycleStartTime - Variable in class ptolemy.actor.lib.DiscreteClock
The most recent cycle start time.
_data - Variable in class ptolemy.actor.lib.MovingAverage
The delay line.
_data - Variable in class ptolemy.domains.sdf.lib.FIR
The delay line.
_dataReceived(String, Object) - Method in class org.kepler.webview.actor.ControlAttribute
 
_dataReceived(String, Object) - Method in class org.kepler.webview.actor.WebViewAttribute
 
_db - Variable in class org.geon.DatabaseAccessor
A JDBC database connection.
_db - Variable in class org.kepler.actor.database.DatabaseTableCreator
A JDBC database connection.
_dbParams - Variable in class org.kepler.provenance.sql.SQLRecording
The follow hold values from DatabaseFactory.Parameters.
_dbReset() - Method in class org.kepler.provenance.sql.SQLRecording
Reset when we use a different db connection.
_dbReset() - Method in class org.kepler.provenance.sql.SQLRecordingV8
Reset when we use a different db connection.
_dbType - Variable in class org.kepler.provenance.sql.SQLQueryV8
The connection to the database.
_dbType - Variable in class org.kepler.provenance.sql.SQLRecording
Connection to the database.
_debug(String) - Method in class org.kepler.provenance.Recording
Debugging output.
_debug(Object) - Method in class org.kepler.provenance.Recording
Debugging output.
_debug(String) - Method in class org.kepler.provenance.sql.SQLQueryV8
 
_debug(String) - Method in class ptolemy.domains.continuous.kernel.ContinuousODESolver
Report a debug message via the director.
_debug(DebugEvent) - Method in class ptolemy.kernel.util.NamedObj
Send a debug event to all debug listeners that have registered.
_debug(String) - Method in class ptolemy.kernel.util.NamedObj
Send a debug message to all debug listeners that have registered.
_debug(String, String) - Method in class ptolemy.kernel.util.NamedObj
Send a debug message to all debug listeners that have registered.
_debug(String, String, String) - Method in class ptolemy.kernel.util.NamedObj
Send a debug message to all debug listeners that have registered.
_debug(String, String, String, String) - Method in class ptolemy.kernel.util.NamedObj
Send a debug message to all debug listeners that have registered.
_debug(DebugEvent) - Method in class ptolemy.kernel.util.PtolemyThread
Send a debug event to all debug listeners that have registered.
_debug(String) - Method in class ptolemy.kernel.util.PtolemyThread
Send a debug message to all debug listeners that have registered.
_debugClosing - Variable in class ptolemy.actor.gui.Tableau
Set to true to print closing sequence information to standard out.
_debugClosing - Variable in class ptolemy.gui.Top
Set to true to print closing sequence information to standard out.
_debugging - Variable in class ptolemy.kernel.util.NamedObj
Flag that is true if there are debug listeners.
_debugging - Variable in class ptolemy.kernel.util.PtolemyThread
Flag that is true if there are debug listeners.
_debugListeners - Variable in class ptolemy.kernel.util.NamedObj
The list of DebugListeners registered with this object.
_debugListeners - Variable in class ptolemy.kernel.util.PtolemyThread
The list of DebugListeners registered with this object.
_debugMenu - Variable in class ptolemy.actor.gui.RunTableau.RunFrame
Debug menu for this frame.
_debugMenu - Variable in class ptolemy.vergil.actor.ActorGraphFrame
Debug menu for this frame.
_debugMenu - Variable in class ptolemy.vergil.modal.FSMGraphFrame
Debug menu for this frame.
_debugMenuItems() - Method in class ptolemy.vergil.modal.FSMGraphFrame
Return an array of debug menu items.
_debugMenuListener - Variable in class ptolemy.vergil.actor.ActorGraphFrame
Listener for debug menu commands.
_debugPrint - Variable in class org.kepler.provenance.Recording
If true, output debugging statements to stdout.
_debugWrite(String) - Method in class org.kepler.provenance.Recording
Write to any debug writer.
_debugWrite(String, Throwable) - Method in class org.kepler.provenance.Recording
Write to any debug writer.
_debugWriter - Variable in class org.kepler.provenance.Recording
Used for debugging output.
_decimationPhaseValue - Variable in class ptolemy.domains.sdf.lib.FIR
DecimationPhase value.
_decimationValue - Variable in class ptolemy.domains.sdf.lib.FIR
Decimation value.
_declareDelayDependency(IOPort, IOPort, double) - Method in class ptolemy.actor.AtomicActor
Set the dependency between the input and output port to represent a time delay with the specified value.
_declareDependency(ConstVariableModelAnalysis, IOPort, String, List) - Method in class ptolemy.domains.modal.kernel.MultirateFSMDirector
Add a DependencyDeclaration (with the name "_MultirateFSMRateDependencyDeclaration") to the variable with the given name in the given port that declares the variable is dependent on the given list of variables.
_declareDependency(ConstVariableModelAnalysis, Port, String, List) - Method in class ptolemy.domains.sdf.kernel.BaseSDFScheduler
Add a DependencyDeclaration (with the name "_SDFRateDependencyDeclaration") to the variable with the given name in the given port that declares the variable is dependent on the given list of variables.
_declareReconfigurationDependencyForRefinementRateVariables(ConstVariableModelAnalysis, IOPort, String) - Method in class ptolemy.domains.modal.kernel.MultirateFSMDirector
Declare the reconfiguration dependency in the given analysis associated with the parameter name of the given port.
_decoratable - Variable in class ptolemy.vergil.basic.LocatableNodeController
A flag indicating that the figures associated with this controller can be decorated to indicate that they are derived.
_decoratePortFigure(Object, Figure) - Method in class ptolemy.vergil.actor.IOPortController.EntityPortRenderer
Decorate the figure according to the properties of the node.
_decorator - Variable in class ptolemy.kernel.util.DecoratorAttributes
The decorator.
_deepConnectedPortList(LinkedList) - Method in class ptolemy.kernel.ComponentPort
Deeply list the opaque ports connected to this port on the outside.
_deepConnectedPorts(LinkedList) - Method in class ptolemy.kernel.ComponentPort
Deprecated.
Use _deepConnectedPortList() instead.
_deepContains(CompositeEntity, Entity, boolean) - Method in class ptolemy.data.expr.ConstraintMonitor
Return true if the specified target is deeply contained by the specified container subject to the constraints given by the opaques parameter.
_deepInsidePortList(LinkedList) - Method in class ptolemy.kernel.ComponentPort
If this port is transparent, then deeply list the ports connected on the inside.
_deepInsidePorts(LinkedList) - Method in class ptolemy.kernel.ComponentPort
Deprecated.
Use _deepInsidePortList() instead.
_deepOpaqueEntityList(List) - Method in class ptolemy.kernel.CompositeEntity
List the opaque entities that are directly or indirectly contained by this entity.
_default - Variable in class ptolemy.actor.lib.hoc.Case
The default refinement.
_default - Variable in class ptolemy.domains.modal.modal.Case
Deprecated.
The default refinement.
_DEFAULT_SCHEDULER_NAME - Static variable in class ptolemy.actor.sched.Scheduler
The default name.
_defaultDependency - Variable in class ptolemy.actor.util.DefaultCausalityInterface
The default dependency of an output port on an input port.
_defaultFileName - Variable in class org.kepler.gui.kar.ExportArchiveAction
 
_defaultInitializer - Static variable in class ptolemy.actor.injection.ActorModuleInitializer
The default initializer used by the PtolemyInjector if one is not provided to it.
_defaultLibrary - Variable in class ptolemy.vergil.basic.BasicGraphFrame
The default Library.
_defaultMicrostep - Variable in class ptolemy.actor.Director
The director's default microstep.
_defaultTypeConstraints() - Method in class org.kepler.actor.RecordOperation
Returns null since we define custom type constraints.
_defaultTypeConstraints() - Method in class org.kepler.ddp.actor.pattern.DDPDataSource
If using the default type constraints, return the default type constraints from the parent class.
_defaultTypeConstraints() - Method in class org.kepler.ddp.actor.pattern.stub.StubSourceActor
Do not establish the usual default type constraints.
_defaultTypeConstraints() - Method in class org.sdm.spa.ArrayPermute
Do not establish the usual default type constraints.
_defaultTypeConstraints() - Method in class ptolemy.actor.lib.ArrayToElements
Do not establish the usual default type constraints.
_defaultTypeConstraints() - Method in class ptolemy.actor.lib.conversions.json.JSONToToken
Do not establish the usual default type constraints.
_defaultTypeConstraints() - Method in class ptolemy.actor.lib.conversions.json.TokenToJSON
Do not establish the usual default type constraints.
_defaultTypeConstraints() - Method in class ptolemy.actor.lib.io.CSVReader
Override the default to eliminate the default type constraints/.
_defaultTypeConstraints() - Method in class ptolemy.actor.lib.io.TokenReader
Deprecated.
Do not establish the usual default type constraints.
_defaultTypeConstraints() - Method in class ptolemy.actor.lib.OrderedMerge
The output must be greater than or equal to each of both inputs.
_defaultTypeConstraints() - Method in class ptolemy.actor.lib.RecordAssembler
Do not establish the usual default type constraints.
_defaultTypeConstraints() - Method in class ptolemy.actor.lib.RecordDisassembler
Do not establish the usual default type constraints.
_defaultTypeConstraints() - Method in class ptolemy.actor.lib.RecordUpdater
Do not establish the usual default type constraints.
_defaultTypeConstraints() - Method in class ptolemy.actor.lib.RunningMaximum
Eliminate default constraints.
_defaultTypeConstraints() - Method in class ptolemy.actor.lib.RunningMinimum
Eliminate default constraints.
_defaultTypeConstraints() - Method in class ptolemy.actor.lib.UnionDisassembler
Do not establish the usual default type constraints.
_defaultTypeConstraints() - Method in class ptolemy.actor.lib.UnionMerge
Do not establish the usual default type constraints.
_defaultTypeConstraints() - Method in class ptolemy.actor.TypedAtomicActor
Return the default type constraints.
_defaultTypeConstraints() - Method in class ptolemy.domains.sdf.lib.ArrayToSequence
Do not establish the usual default type constraints.
_defaultTypeConstraints() - Method in class ptolemy.matlab.Expression
Default type constraints do not apply in this case, since the input type may be totally unrelated to the output type and cannot be inferred; return null.
_defaultVisit(ASTPtRootNode) - Method in class ptolemy.data.expr.ParseTreeSpecializer
 
_deferChangeRequests - Variable in class ptolemy.kernel.util.NamedObj
Flag indicating that we should not immediately execute a change request.
_degreeOfParallelism - Variable in class org.kepler.ddp.director.DDPEngine
The default degree of parallelism for ddp pattern actors.
_delay - Variable in class ptolemy.actor.lib.TimeDelay
The amount of delay.
_delay - Variable in class ptolemy.domains.continuous.lib.ContinuousTimeDelay
The amount of delay.
_delay - Variable in class ptolemy.domains.de.lib.TimedDelay
Deprecated.
The amount of delay.
_delay - Variable in class ptolemy.domains.de.lib.Timer
Deprecated.
The amount of delay.
_delay - Variable in class ptolemy.domains.de.lib.VariableDelay
Deprecated.
The amount of delay.
_delayBlockCount - Variable in class ptolemy.domains.pn.kernel.TimedPNDirector
The number of time-blocked processes.
_delayDependencies - Variable in class ptolemy.actor.util.DefaultCausalityInterface
A record of delay dependencies from input to output, if any.
_delayedOutputTokens - Variable in class ptolemy.domains.de.lib.TimedDelay
Deprecated.
A local event queue to store the delayed output tokens.
_delayedOutputTokens - Variable in class ptolemy.domains.de.lib.Timer
Deprecated.
A local queue to store the delayed tokens.
_delayedOutputTokens - Variable in class ptolemy.domains.de.lib.VariableDelay
Deprecated.
A local event queue to store the delayed output tokens.
_deleteMoML(AbstractBasicGraphModel, Object[], SelectionModel) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Return the MoML to delete the specified selection objects.
_deletePortFile(String) - Static method in class org.kepler.util.sql.HSQL
Delete the port file for a database.
_deletePorts() - Method in class org.kepler.dataproxy.datasource.geon.GEONShpResource
Deletes all the ports of this actor.
_dependencyVersion - Variable in class ptolemy.actor.util.CausalityInterfaceForComposites
The workspace version where the dependency was last updated.
_dependentVariable - Variable in class ptolemy.data.expr.ParseTreeFreeVariableRenamer
The variable to which the parse tree belongs.
_depth - Variable in class ptolemy.data.ArrayToken
The depth of the hierarchy of array tokens used to represent this array.
_depth - Variable in class ptolemy.domains.de.kernel.DEEvent
The depth of this event.
_derivedPiggybacks - Variable in class ptolemy.actor.CompositeActor
The derived piggybacked executables.
_description(int, int, int) - Method in class org.kepler.util.WorkflowRun
Return a description of the object.
_description(int, int, int) - Method in class ptolemy.actor.Director
Return a description of the object.
_description(int, int, int) - Method in class ptolemy.actor.IOPort
Return a description of the object.
_description(int, int, int) - Method in class ptolemy.actor.IORelation
Return a description of the object.
_description(int, int, int) - Method in class ptolemy.actor.TypedIOPort
Return a description of the object.
_description(int, int, int) - Method in class ptolemy.data.expr.Variable
Return a description of this variable.
_description(int, int, int) - Method in class ptolemy.kernel.ComponentPort
Return a description of the object.
_description(int, int, int) - Method in class ptolemy.kernel.CompositeEntity
Return a description of the object.
_description(int, int, int) - Method in class ptolemy.kernel.Entity
Return a description of the object.
_description(int, int, int) - Method in class ptolemy.kernel.Port
Return a description of the object.
_description(int, int, int) - Method in class ptolemy.kernel.Relation
Return a description of the object.
_description(int, int, int) - Method in class ptolemy.kernel.util.NamedObj
Return a description of the object.
_description(int, int, int) - Method in class ptolemy.kernel.util.Workspace
Return a description of the workspace.
_description(int, int, int) - Method in class ptolemy.vergil.icon.XMLIcon
Return a description of the object.
_descriptionAtt - Variable in class org.kepler.dataproxy.datasource.geon.GEONDatabaseResource
 
_descriptionAtt - Variable in class org.kepler.dataproxy.datasource.geon.GEONShpResource
 
_destinationNames - Variable in class ptolemy.domains.modal.kernel.AbstractActionsAttribute
List of destination names.
_destinations - Variable in class ptolemy.domains.modal.kernel.AbstractActionsAttribute
List of destinations.
_destinationsListVersion - Variable in class ptolemy.domains.modal.kernel.AbstractActionsAttribute
The workspace version number when the _destinations list is last updated.
_destinationState() - Method in class ptolemy.domains.modal.kernel.FSMActor
Return the chosen destination state.
_destinationTypeConstraints(TypedIOPort) - Method in class ptolemy.actor.lib.hoc.IterateOverArray
Return the type constraints on all connections starting from the specified source port to all the ports in a group of destination ports.
_destinationTypeConstraints(TypedIOPort) - Method in class ptolemy.actor.TypedCompositeActor
Return the type constraints on all connections starting from the specified source port to all the ports in a group of destination ports.
_dFormat - Variable in class org.kepler.provenance.TextFileRecording
Format timestamps.
_dFormat - Variable in class org.kepler.provenance.XMLRecording
Deprecated.
Format timestamps.
_diff - Static variable in class ptolemy.moml.filter.JavaScriptThisUpdate
The ptolemy.util.test.Diff.diff(String, String) method.
_dimensionString(Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Print out the dimensions of the given matrix.
_dimensionString(double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Return a string that describes the number of rows and columns.
_dimensionString(float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Return a string that describes the number of rows and columns.
_dimensionString(Fraction[][]) - Static method in class ptolemy.math.FractionMatrixMath
Return a string that describes the number of rows and columns.
_dimensionString(int[][]) - Static method in class ptolemy.math.IntegerMatrixMath
Return a string that describes the number of rows and columns.
_dimensionString(long[][]) - Static method in class ptolemy.math.LongMatrixMath
Return a string that describes the number of rows and columns.
_director - Variable in class org.kepler.ddp.director.DDPEngine
The containing director.
_director - Variable in class ptolemy.actor.lib.hoc.Case
The director.
_director - Variable in class ptolemy.actor.process.ProcessThread
The director responsible for the execution of the actor.
_director - Variable in class ptolemy.actor.sched.FixedPointReceiver
The director of this receiver.
_director - Variable in class ptolemy.domains.continuous.kernel.ContinuousODESolver
The Continuous director that contains this solver.
_director - Variable in class ptolemy.domains.pn.kernel.PNQueueReceiver
The director in charge of this receiver.
_directorVersion - Variable in class ptolemy.domains.de.kernel.DEReceiver
The version of the workspace of container, used for caching by _getDirector().
_directory - Variable in class ptolemy.actor.gui.PlotTableauFrame
Directory that contains the input file.
_directory - Static variable in class ptolemy.gui.Top
The most recent directory used in a file dialog.
_directory - Variable in class ptolemy.plot.PlotFrame
Directory that contains the input file.
_DIRECTORY_NAME - Static variable in class ptolemy.actor.gui.Configuration
The name of the model directory.
_disableActor(Actor) - Method in class ptolemy.domains.de.kernel.DEDirector
Disable the specified actor.
_disabledActors - Variable in class ptolemy.domains.de.kernel.DEDirector
The set of actors that have returned false in their postfire() methods.
_disabledRefinements - Variable in class ptolemy.domains.modal.kernel.FSMActor
State and transition refinements that have returned false in postfire().
_discarded - Variable in class ptolemy.domains.continuous.lib.ContinuousTimeDelay
Holds the most recently discarded event from the input buffer.
_DISCARDED - Static variable in class ptolemy.gui.Top
Indicator that a file is discarded.
_disconnect(Edge, Node) - Method in class ptolemy.graph.DirectedGraph
 
_disconnect(Edge, Node) - Method in class ptolemy.graph.Graph
Disconnect an edge from a node that it is incident to.
_disconnectEdge(Edge) - Method in class ptolemy.graph.Graph
Disconnect a given edge in this graph.
_displayNode(ASTPtRootNode) - Method in class ptolemy.data.expr.ParseTreeDumper
Display the given node with the current prefix, recursing into the children of the node.
_displayRedirectDir - Variable in class org.kepler.ddp.director.DDPEngine
Directory for display redirect.
_displays - Variable in class ptolemy.actor.gui.ModelPane
A panel into which to place model displays.
_displayString() - Method in class ptolemy.vergil.icon.AttributeValueIcon
Get the string to render in the icon.
_displayString() - Method in class ptolemy.vergil.icon.BoxedValuesIcon
Get the string to render in the icon.
_displayWidth - Variable in class ptolemy.vergil.kernel.attributes.AttributeValueAttribute
Most recent value of the rounding parameter.
_divide(Token) - Method in class ptolemy.data.AbstractConvertibleToken
Return a new token whose value is the value of this token divided by the value of the argument token.
_divide(Token) - Method in class ptolemy.data.AbstractNotConvertibleToken
Return a new token whose value is the value of this token divided by the value of the argument token.
_divide(Token) - Method in class ptolemy.data.ArrayToken
Return a new token whose value is the value of this token divided by the value of the argument token.
_divide(ScalarToken) - Method in class ptolemy.data.BooleanToken
Return a new token whose value is the value of this token divided by the value of this Token.
_divide(ScalarToken) - Method in class ptolemy.data.ComplexToken
Return a new token whose value is the value of this token divided by the value of the argument token.
_divide(Token) - Method in class ptolemy.data.DateToken
Subtract is not supported for Dates.
_divide(ScalarToken) - Method in class ptolemy.data.DoubleToken
Return a new token whose value is the value of this token divided by the value of the argument token.
_divide(ScalarToken) - Method in class ptolemy.data.expr.ConcreteScalarToken
Throw an exception.
_divide(ScalarToken) - Method in class ptolemy.data.FixToken
Return a new token whose value is the value of this token divided by the value of the argument token.
_divide(ScalarToken, Quantization) - Method in class ptolemy.data.FixToken
Return a new token whose value is the value of this token divided by the value of the argument token.
_divide(ScalarToken) - Method in class ptolemy.data.FloatToken
Return a new token whose value is the value of this token divided by the value of the argument token.
_divide(ScalarToken) - Method in class ptolemy.data.IntToken
Return a new token whose value is the value of this token divided by the value of the argument token.
_divide(ScalarToken) - Method in class ptolemy.data.LongToken
Return a new token whose value is the value of this token divided by the value of the argument token.
_divide(ScalarToken) - Method in class ptolemy.data.PetiteToken
Return a new token whose value is the value of this token divided by the value of the argument token.
_divide(Token) - Method in class ptolemy.data.RecordToken
Return a new token whose value is the field-wise division of this token and the argument.
_divide(ScalarToken) - Method in class ptolemy.data.ScalarToken
Return a new token whose value is the value of this token divided by the value of the argument token.
_divide(ScalarToken) - Method in class ptolemy.data.ShortToken
Return a new token whose value is the value of this token divided by the value of the argument token.
_divide(ScalarToken) - Method in class ptolemy.data.SmoothToken
Return a new token whose value is the value of this token divided by the value of the argument token.
_divide(Token) - Method in class ptolemy.data.StringToken
Return a new token whose value is the value of this token divided by the value of the argument token.
_divide(Token) - Method in class ptolemy.data.UnionToken
Return a new token whose value is the division of this token and the argument.
_divide(ScalarToken) - Method in class ptolemy.data.UnsignedByteToken
Return a new token whose value is the value of this token divided by the value of the argument token.
_divideElement(Token) - Method in class ptolemy.data.ComplexMatrixToken
Return a new token whose elements are the result of dividing the elements of this token by the argument.
_divideElement(Token) - Method in class ptolemy.data.DoubleMatrixToken
Return a new token whose elements are the result of dividing the elements of this token by the argument.
_divideElement(Token) - Method in class ptolemy.data.IntMatrixToken
Return a new token whose elements are the result of dividing the elements of this token by the argument.
_divideElement(Token) - Method in class ptolemy.data.LongMatrixToken
Return a new token whose elements are the result of dividing the elements of this token by the argument.
_divideElement(Token) - Method in class ptolemy.data.MatrixToken
Return a new token whose elements are the result of dividing the elements of this token by the argument.
_divideReverse(Token) - Method in class ptolemy.data.ArrayToken
Return a new token whose value is the value of this token divided into the value of the argument token.
_documentBase - Variable in class ptolemy.plot.PlotBox
The document base we use to find the _filespec.
_doFilter() - Method in class ptolemy.actor.lib.GradientAdaptiveLattice
 
_doFilter() - Method in class ptolemy.actor.lib.Lattice
Compute the filter, updating the caches, based on the current values.
_done() - Method in class org.ptolemy.commons.FutureValue
Protected method invoked when this task transitions to state isDone (whether normally or via cancellation).
_doPostfire() - Method in class ptolemy.domains.modal.kernel.MultirateFSMDirector
Postfire the modal model and commit the transition.
_doubleArrayToByteArray(double[][]) - Method in class ptolemy.media.javasound.LiveSoundCommon
Convert a double array of audio samples into a byte array of audio samples in linear signed PCM big endian format.
_downKeyPressed - Variable in class ptolemy.actor.lib.gui.ArrowKeySensor
A flag indicating if the down arrow key has been pressed since the last firing of the actor.
_downKeyReleased - Variable in class ptolemy.actor.lib.gui.ArrowKeySensor
A flag indicating if the down arrow key has been released since the last firing of the actor.
_drawBar(Graphics, int, long, long, boolean) - Method in class ptolemy.plot.Histogram
Draw bar from the specified point to the y axis.
_drawBar(Graphics, int, long, long, boolean) - Method in class ptolemy.plot.Plot
Draw bar from the specified point to the y axis.
_drawChildren(Object) - Method in class ptolemy.vergil.basic.LocatableNodeController
Render the children of the specified node.
_drawErrorBar(Graphics, int, long, long, long, boolean) - Method in class ptolemy.plot.Plot
Draw an error bar for the specified yLowEB and yHighEB values.
_drawImpulse(Graphics, long, long, boolean) - Method in class ptolemy.plot.Plot
Draw a line from the specified point to the y axis.
_drawLine(Graphics, int, long, long, long, long, boolean) - Method in class ptolemy.plot.Plot
Draw a line from the specified starting point to the specified ending point.
_drawLine(Graphics, int, long, long, long, long, boolean, float) - Method in class ptolemy.plot.Plot
Draw a line from the specified starting point to the specified ending point.
_drawPlot(Graphics, boolean, Rectangle) - Method in class ptolemy.plot.Histogram
Draw the axes and then plot the histogram.
_drawPlot(Graphics, boolean, Rectangle) - Method in class ptolemy.plot.Plot
Draw the axes and then plot all points.
_drawPlot(Graphics, boolean) - Method in class ptolemy.plot.PlotBox
Draw the axes using the current range, label, and title information.
_drawPlot(Graphics, boolean, Rectangle) - Method in class ptolemy.plot.PlotBox
Draw the axes using the current range, label, and title information, at the size of the specified rectangle.
_drawPoint(Graphics, int, long, long, boolean) - Method in class ptolemy.plot.Plot
Put a mark corresponding to the specified dataset at the specified x and y position.
_drawPoint(Graphics, int, long, long, boolean) - Method in class ptolemy.plot.PlotBox
Put a mark corresponding to the specified dataset at the specified x and y position.
_drawReferenceBox() - Method in class ptolemy.vergil.icon.EditIconFrame
Draw a reference box with the default icon size, 60x40.
_dropTarget - Variable in class ptolemy.vergil.basic.BasicGraphFrame
The instance of EditorDropTarget associated with the JGraph.
_dropTarget - Variable in class ptolemy.vergil.basic.EditorDropTargetListener
Associated DropTarget.
_editFormat() - Method in class ptolemy.actor.gui.PlotTableauFrame
Interactively edit the file format in a modal dialog.
_editFormat() - Method in class ptolemy.plot.PlotFrame
Interactively edit the file format in a modal dialog.
_editIconAction - Variable in class ptolemy.vergil.actor.ActorController
The action that handles edit custom icon.
_editIconAction - Variable in class ptolemy.vergil.actor.ExternalIOPortController
The action that handles edit custom icon.
_editIconAction - Static variable in class ptolemy.vergil.basic.WithIconGraphController
The edit custom icon action.
_editIconAction - Variable in class ptolemy.vergil.kernel.AttributeWithIconController
The edit custom icon action.
_editMenu - Variable in class ptolemy.actor.gui.PlotTableauFrame
Edit menu for this frame.
_editMenu - Variable in class ptolemy.actor.gui.TextEditor
The edit menu.
_editMenu - Variable in class ptolemy.plot.PlotFrame
Edit menu for this frame.
_editMenu - Variable in class ptolemy.vergil.basic.BasicGraphFrame
The edit menu.
_editorFactory - Variable in class org.kepler.scriptengine.ScriptEngineActor
Text editor.
_editPreferencesAction - Variable in class ptolemy.vergil.basic.BasicGraphFrame
The action to edit preferences.
_effigy - Variable in class ptolemy.actor.lib.image.ImageDisplayJavaSE
The effigy for the image data.
_elementDump(Object, Graph, String) - Static method in exception ptolemy.graph.GraphException
Return a dump of an element (Node, Edge, or weight) and the container graph suitable to be appended to an error message.
_elementIsNil(int) - Method in class ptolemy.data.MatrixToken
Add the element to the _nils Set.
_elementName - Variable in class ptolemy.kernel.util.NamedObj
The MoML element name.
_elementType - Variable in class ptolemy.data.ArrayToken
The type of this array.
_elli - Variable in class org.kepler.dataproxy.datasource.geon.GEONDatabaseResource
Icon indicating the communication region.
_EMPTY_COLLECTION - Static variable in class ptolemy.actor.util.DefaultCausalityInterface
Empty collection for use by dependentPort().
_emptyGraph() - Method in class ptolemy.graph.Graph
Return an empty graph that has the same run-time type as this graph.
_enableApplyButton(boolean) - Method in class ptolemy.vergil.unit.UnitConstraintsDialog
Enable or disable the apply button.
_enabled - Variable in class ptolemy.actor.lib.Clock
Deprecated.
Indicator of whether the specified number of cycles have been completed.
_enabled - Variable in class ptolemy.actor.lib.DiscreteClock
Indicator of whether the specified number of cycles have been completed.
_enclosingContinuousDirector() - Method in class ptolemy.domains.continuous.kernel.HybridModalDirector
Return the enclosing continuous director, or null if there is none.
_endPoint - Variable in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreDataSource
The ecogrid query services url
_endpointAtt - Variable in class org.kepler.dataproxy.datasource.geon.GEONDatabaseResource
 
_endpointAtt - Variable in class org.kepler.dataproxy.datasource.geon.GEONShpResource
 
_engine - Variable in class org.kepler.scriptengine.ScriptEngineActor
The engine to parse and execute scripts.
_engineName - Variable in class org.kepler.ddp.director.DDPEngine
The name of the engine.
_enqueueEvent(Actor, Time, int) - Method in class ptolemy.domains.de.kernel.DEDirector
Put a pure event into the event queue to schedule the given actor to fire at the specified timestamp.
_enqueueTriggerEvent(IOPort) - Method in class ptolemy.domains.de.kernel.DEDirector
Put a trigger event into the event queue.
_entityCacheTable - Variable in class org.kepler.provenance.sql.SQLRecording
A table to cache RegEntity objects.
_entityController - Variable in class ptolemy.vergil.actor.ActorViewerGraphController
The entity controller.
_entityPortController - Variable in class ptolemy.vergil.actor.ActorViewerGraphController
The entity port controller.
_entries - Variable in class ptolemy.gui.Query
The hashtable of items in the query.
_equivalenceClasses - Variable in class ptolemy.actor.util.CausalityInterfaceForComposites
Computed equivalence classes of input ports.
_error(String) - Method in class org.kepler.provenance.Recording
Error output.
_error(String) - Method in class ptolemy.gui.GraphicalMessageHandler
Show the specified error message.
_error(String, Throwable) - Method in class ptolemy.gui.GraphicalMessageHandler
Show the specified message and throwable information.
_error(String) - Method in class ptolemy.gui.UndeferredGraphicalMessageHandler
Show the specified error message.
_error(String, Throwable) - Method in class ptolemy.gui.UndeferredGraphicalMessageHandler
Show the specified message and throwable information.
_error(String) - Method in class ptolemy.util.MessageHandler
Show the specified error message.
_error(String, Throwable) - Method in class ptolemy.util.MessageHandler
Show the specified message and throwable information.
_error(String) - Method in class ptolemy.util.SimpleMessageHandler
Throw a RuntimeException.
_error(String, Throwable) - Method in class ptolemy.util.SimpleMessageHandler
Show the specified message and throwable information.
_error(String, Throwable) - Method in class ptolemy.util.test.RecorderMessageHandler
Show the specified message and throwable information and record.
_errorReset() - Method in class org.kepler.provenance.sql.SQLRecording
Reset when we encounter an error.
_errorReset() - Method in class org.kepler.provenance.sql.SQLRecordingV7
Reset when we encounter an error.
_evaluate() - Method in class ptolemy.data.expr.ConstraintMonitor
Evaluate the current expression to a token, which in this case means to sum the values of all the decorated objects.
_evaluate() - Method in class ptolemy.data.expr.Variable
Evaluate the current expression to a token.
_evaluateAllChildren(ASTPtRootNode) - Method in class ptolemy.data.expr.ParseTreeEvaluator
Loop through all of the children of this node, visiting each one of them; this will cause their token value to be determined.
_evaluateArrayIndex(ASTPtRootNode, Token, Token) - Method in class ptolemy.data.expr.ParseTreeEvaluator
Evaluate the array index operation represented by the given node.
_evaluateChild(ASTPtRootNode, int) - Method in class ptolemy.data.expr.ParseTreeEvaluator
Evaluate the child with the given index of the given node.
_evaluatedChildToken - Variable in class ptolemy.data.expr.ParseTreeEvaluator
 
_evaluatedScriptObject - Variable in class org.kepler.scriptengine.ScriptEngineActor
The Object resulting from evaluating the script.
_evaluateMatrixIndex(ASTPtRootNode, Token, Token, Token) - Method in class ptolemy.data.expr.ParseTreeEvaluator
Evaluate the Matrix index operation represented by the given node.
_evaluateScript() - Method in class org.kepler.scriptengine.Java
Evaluate the script.
_evaluateScript() - Method in class org.kepler.scriptengine.ScriptEngineActor
Evaluate the script.
_evaluator - Variable in class ptolemy.data.expr.ParseTreeSpecializer
 
_eventQueue - Variable in class ptolemy.domains.de.kernel.DEDirector
The queue used for sorting events.
_eventQueue - Variable in class ptolemy.domains.pn.kernel.TimedPNDirector
The priority queue that stores the list of processes waiting for time to advance.
_eventQueueLock - Variable in class ptolemy.domains.de.kernel.DEDirector
The lock for the queue.
_evolId - Variable in class org.kepler.provenance.sql.SQLRecordingV7
ID of current change to workflow structure.
_excludedNames - Variable in class ptolemy.data.expr.ParseTreeSpecializer
 
_execAnnotation - Variable in class org.kepler.provenance.sql.SQLRecordingV8
Value of execution annotation parameter.
_execute() - Method in class ptolemy.kernel.undo.RedoChangeRequest
Execute the change by invoking redo on the undo stack of the context specified in the constructor.
_execute() - Method in class ptolemy.kernel.undo.UndoChangeRequest
Execute the change by invoking undo on the undo stack of the context specified in the constructor.
_execute() - Method in class ptolemy.kernel.util.ChangeRequest
Execute the change.
_execute() - Method in class ptolemy.moml.MoMLChangeRequest
Execute the change by evaluating the request and propagating the request if appropriate.
_execute() - Method in class ptolemy.vergil.basic.layout.kieler.ApplyLayoutRequest
Execute the request.
_executeChangeRequests(List<ChangeRequest>) - Method in class ptolemy.kernel.util.NamedObj
Execute the specified list of change requests.
_executeDDPJob() - Method in class org.kepler.ddp.director.DDPEngine
Execute the DDP job.
_executeDDPJob() - Method in class org.kepler.hadoop.director.HadoopEngine
 
_executeDDPJob() - Method in class org.kepler.spark.director.SparkEngine
 
_executeDDPJob() - Method in class org.kepler.stratosphere.director.StratosphereEngine
Execute the engine.
_executeInside() - Method in class ptolemy.component.ComponentActor
Invoke one iteration and transfer the token to a method call.
_executeInsideModel() - Method in class ptolemy.actor.lib.hoc.ExecuteActor
Run a complete execution of the model provided on the actor port.
_executeInsideModel() - Method in class ptolemy.actor.lib.hoc.LifeCycleManager
Run a complete execution of the contained model.
_executeSQL(String) - Method in class org.kepler.util.sql.DatabaseType
Execute an SQL statement.
_executeSQL(String, Connection) - Method in class org.kepler.util.sql.HSQL
Execute an SQL statement for a Connection.
_executionAspects - Variable in class ptolemy.actor.Director
ExecutionAspects in the container of this director.
_executionClassName - Variable in class org.kepler.ddp.actor.pattern.SingleInputPatternActor
The execution class name.
_executionCodeType - Variable in class org.kepler.ddp.actor.pattern.SingleInputPatternActor
The execution code type.
_executionFinishedOrError - Variable in class ptolemy.moml.MoMLSimpleApplication
A flag that indicates if the execution has finished or thrown an error.
_executionHadAnError - Variable in class org.kepler.provenance.sql.SQLRecordingV8
True if executionError is called
_executionLSIDtoIdMap - Variable in class org.kepler.provenance.sql.SQLRecordingV8
 
_executionMonitorRecording - Variable in class org.kepler.profiling.gui.ExecutionMonitorPanel
The recording class that updates the table.
_executionTableContextMenu - Variable in class org.kepler.profiling.gui.ExecutionMonitorPanel
Context menu for execution table.
_exit() - Method in class org.kepler.KeplerConfigurationApplication
Start a new thread that calls Kepler.shutdown() and exits the JVM.
_exit - Variable in class ptolemy.actor.gui.ConfigurationApplication
Indicator that -runThenExit was requested.
_exit() - Method in class ptolemy.actor.gui.TableauFrame
Close all open tableaux, querying the user as necessary to save data, and then exit the application.
_exit() - Method in class ptolemy.gui.Top
Exit the application after querying the user to save data.
_exitResult - Variable in class ptolemy.gui.Top
The return value of the _exit() menu.
_expandLibrary(String, Configuration) - Static method in class ptolemy.actor.gui.HTMLAbout
Expand the left hand library pane.
_export() - Method in class ptolemy.actor.gui.PlotTableauFrame
Query the user for a filename and export the plot to that file.
_export() - Method in class ptolemy.plot.PlotFrame
Query the user for a filename and export the plot to that file.
_EXPORT_MENU_INDEX - Static variable in class ptolemy.gui.Top
Index in the _fileMenuItems array of the Export item.
_exportDesignPattern(Writer, NamedObj, String) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Export the model into the writer with the given name.
_exportDesignPattern(Writer, NamedObj, String) - Method in class ptolemy.vergil.modal.FSMGraphFrame
Export the model into the writer with the given name.
_exportDesignPatternAction - Variable in class ptolemy.vergil.actor.ActorGraphFrame
The action for exporting a design pattern.
_exportGIFAction - Variable in class ptolemy.actor.gui.PlotTableauFrame
The export to GIF action.
_exportGIFAction - Variable in class ptolemy.actor.gui.TextEditor
The export to GIF action.
_exportGIFAction - Variable in class ptolemy.vergil.basic.BasicGraphFrame
The export to GIF action.
_exportHTMLAction - Variable in class ptolemy.vergil.basic.BasicGraphFrame
The export HTML action.
_exportImageTest(String) - Method in class ptolemy.vergil.basic.test.junit.ExportImageJUnitTest
Test the Export Image facility by saving images and reading them back in.
_exportLatexPlotData() - Method in class ptolemy.plot.Plot
Return Latex plot data.
_exportLatexPlotData() - Method in class ptolemy.plot.PlotBox
Return Latex plot data.
_exportMoMLContents(Writer, int) - Method in class org.sdm.spa.gui.UserInteractiveShell
Write a MoML description of the contents of this object.
_exportMoMLContents(Writer, int) - Method in class org.sdm.spa.TextualInteractionShell
Write a MoML description of the contents of this object.
_exportMoMLContents(Writer, int) - Method in class ptolemy.actor.gui.AbstractPlaceableActor
Write a MoML description of the contents of this object.
_exportMoMLContents(Writer, int) - Method in class ptolemy.actor.gui.AbstractPlaceableJavaSE
Write a MoML description of the contents of this object.
_exportMoMLContents(Writer, int) - Method in class ptolemy.actor.IOPort
Write a MoML description of the contents of this object, which in this class is the attributes plus possibly a special attribute to indicate whether the port is a multiport.
_exportMoMLContents(Writer, int) - Method in class ptolemy.actor.LazyTypedCompositeActor
Write a MoML description of the contents of this object, wrapped in a configure element.
_exportMoMLContents(Writer, int) - Method in class ptolemy.actor.lib.gui.InteractiveDialog
Write a MoML description of the contents of this object.
_exportMoMLContents(Writer, int) - Method in class ptolemy.actor.lib.gui.InteractiveShell
Write a MoML description of the contents of this object.
_exportMoMLContents(Writer, int) - Method in class ptolemy.actor.lib.gui.PlotterBase
Write a MoML description of the contents of this object, which in this class is the configuration information.
_exportMoMLContents(Writer, int) - Method in class ptolemy.actor.lib.hoc.MobileModel
Export the moml description of this.
_exportMoMLContents(Writer, int) - Method in class ptolemy.actor.lib.hoc.ReflectComposite
Override the base class to describe contained entities, attributes, and ports, but not inside links or relations.
_exportMoMLContents(Writer, int) - Method in class ptolemy.domains.ddf.lib.ActorRecursion
Write a MoML description of the contents of this object.
_exportMoMLContents(Writer, int) - Method in class ptolemy.domains.modal.kernel.State
Write a MoML description of the contents of this object, which in this class are the attributes plus the ports.
_exportMoMLContents(Writer, int) - Method in class ptolemy.kernel.CompositeEntity
Write a MoML description of the contents of this object, which in this class are the attributes, ports, contained relations, and contained entities, plus all links.
_exportMoMLContents(Writer, int) - Method in class ptolemy.kernel.Entity
Write a MoML description of the contents of this object, which in this class are the attributes plus the ports.
_exportMoMLContents(Writer, int) - Method in class ptolemy.kernel.util.ConfigurableAttribute
Write a MoML description of the contents of this object.
_exportMoMLContents(Writer, int) - Method in class ptolemy.kernel.util.NamedObj
Write a MoML description of the contents of this object, which in this base class is the attributes.
_exportMoMLContents(Writer, int) - Method in class ptolemy.moml.EntityLibrary
Write a MoML description of the contents of this object, wrapped in a configure element.
_exportMoMLContents(Writer, int) - Method in class ptolemy.moml.MoMLModelAttribute
Write a MoML description this object, which includes a MoML description of the contained model within the <configure> tag.
_exportMoMLContents(Writer, int) - Method in class ptolemy.moml.Vertex
Write a MoML description of the contents of this object, which in this base class is the attributes.
_exportPDFAction - Variable in class ptolemy.actor.gui.PlotTableauFrame
The export to PDF action.
_exportPDFAction - Variable in class ptolemy.vergil.basic.BasicGraphFrame
The export to PDF action.
_exportPNGAction - Variable in class ptolemy.actor.gui.PlotTableauFrame
The export to PNG action.
_exportPNGAction - Variable in class ptolemy.actor.gui.TextEditor
The export to PNG action.
_exportPNGAction - Variable in class ptolemy.vergil.basic.BasicGraphFrame
The export to PNG action.
_exportToWebTest(String, String) - Method in class ptolemy.vergil.basic.export.html.test.junit.ExportToWebJUnitTest
Test the ExportToWeb facility by reading in a model, and exporting it.
_externalRates - Variable in class ptolemy.domains.sdf.kernel.SDFScheduler
Mmaps from external ports to the number of tokens that that port will produce or consume in each firing.
_FAILED - Static variable in class ptolemy.gui.Top
Indicator that a file save failed.
_failedResponse(Handler<AsyncResult<JsonArray>>, String) - Method in class org.kepler.webview.server.app.AbstractApp
 
_far - Variable in class ptolemy.kernel.util.CrossRefList.CrossRef
The far CrossRef.
_fieldNames - Variable in class ptolemy.data.expr.ASTPtRecordConstructNode
The list of field names for the record.
_fields - Variable in class ptolemy.data.RecordToken
The map of fields that has keys of type String and values of type token.
_figures - Variable in class ptolemy.vergil.icon.DynamicEditorIcon
A list of weak references to figures that this has created.
_file - Variable in class ptolemy.actor.gui.PlotTableauFrame
The input file.
_file - Variable in class ptolemy.plot.PlotFrame
The input file.
_fileFilter - Variable in class ptolemy.gui.Top
The FileFilter that determines what files are displayed by the Open dialog and the Save As dialog The initial default is null, which causes no FileFilter to be applied, which results in all files being displayed.
_fileMenu - Variable in class ptolemy.gui.Top
File menu for this frame.
_fileMenu - Variable in class ptolemy.plot.PlotFrame
File menu for this frame.
_fileMenuItems - Variable in class ptolemy.gui.Top
Items in the file menu.
_filenameFilter - Variable in class ptolemy.gui.Top
The FileFilter used by the java.awt.FileDialog that determines what files are displayed by the Open dialog and the Save As dialog The initial default is null, which causes no FileFilter to be applied, which results in all files being displayed.
_fileNameStr - Variable in class org.kepler.gis.actor.io.GISWriter
The output file name.
_find() - Method in class ptolemy.actor.gui.TextEditor
Find and replace.
_find(NamedObj, String, boolean, boolean, boolean, boolean, Pattern) - Method in class ptolemy.vergil.basic.SearchResultsDialog
Return a list of objects in the model that match the specified search.
_findAction - Variable in class ptolemy.vergil.basic.BasicGraphFrame
The find action.
_findDependencies(Actor, boolean, boolean) - Method in class ptolemy.vergil.basic.DependencyResultsDialog
Return a list of objects in the model that match the specified search.
_finish - Variable in class org.kepler.ddp.actor.pattern.stub.StubSourceActor
If true, the actor will stop workflow execution.
_finishedAddEntity(ComponentEntity) - Method in class ptolemy.actor.CompositeActor
Notify this actor that the given entity has been added inside it.
_finishedAddEntity(ComponentEntity) - Method in class ptolemy.domains.ddf.lib.ActorRecursion
Notify this actor that the given entity has been added inside it.
_finishedAddEntity(ComponentEntity) - Method in class ptolemy.kernel.CompositeEntity
Notify this entity that the given entity has been added inside it.
_finishExportDesignPattern() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Finish exporting a design pattern.
_finishExportDesignPattern() - Method in class ptolemy.vergil.modal.FSMGraphFrame
Finish exporting a design pattern.
_finishRefreshOutline(NamedObj) - Method in class org.kepler.profiling.gui.ActorFireOutlineTabPane
 
_finishRefreshOutline(NamedObj) - Method in class org.kepler.profiling.gui.PortIOOutlineTabPane
 
_finishRefreshOutline(NamedObj) - Method in class org.kepler.profiling.gui.WorkflowRunOutlineTabPane
 
_finishRequested - Variable in class ptolemy.actor.Director
Indicator that finish() has been called.
_fire() - Method in class ptolemy.domains.de.kernel.DEDirector
Advance the current model tag to that of the earliest event in the event queue, and fire all actors that have requested or are triggered to be fired at the current tag.
_fireActor(Actor) - Method in class ptolemy.actor.sched.FixedPointDirector
Fire an actor.
_fireActor(Actor) - Method in class ptolemy.domains.ddf.kernel.DDFDirector
Iterate the actor once.
_fireAt(Time) - Method in class ptolemy.actor.TypedAtomicActor
Request a firing of this actor at the specified time and throw an exception if the director does not agree to do it at the requested time.
_fireAt(double) - Method in class ptolemy.actor.TypedAtomicActor
Request a firing of this actor at the specified time and throw an exception if the director does not agree to do it at the requested time.
_fireAt(Time) - Method in class ptolemy.domains.de.lib.TimedDelay
Deprecated.
Request a firing of this actor at the specified time and throw an exception if the director does not agree to do it at the requested time.
_fireCopying() - Method in class ptolemy.domains.sdf.optimize.lib.DummyTransformer
Fire the actor in shared firing mode.
_fireCopying() - Method in class ptolemy.domains.sdf.optimize.SharedBufferTransformer
Fire the actor in shared firing mode.
_firedOnce - Variable in class ptolemy.actor.lib.NonStrictTest
Set to true if fire() is called once.
_firedOnce - Variable in class ptolemy.actor.lib.PublisherNonStrictTest
Set to true if fire() is called once.
_fireExclusive() - Method in class ptolemy.domains.sdf.optimize.lib.DummyTransformer
Fire the actor in exclusive firing mode.
_fireExclusive() - Method in class ptolemy.domains.sdf.optimize.SharedBufferTransformer
Fire the actor in exclusive firing mode.
_fireInsideModel() - Method in class ptolemy.actor.lib.hoc.LifeCycleManager
Invoke the fire() method of its local director.
_fireSemanticTypeBrowserSelection(ActionEvent) - Method in class org.kepler.sms.gui.SemanticTypeBrowserPane
 
_fireStateTable - Variable in class org.kepler.provenance.SimpleFiringRecording
A table to map actor to its firing state object.
_fireStateTable - Variable in class org.kepler.provenance.sql.SQLRecording
A table to map actor to its firing state object.
_firingCountLimit - Variable in class ptolemy.actor.lib.LimitedFiringSource
This is the value in parameter firingCountLimit.
_firingEventTypeLabels - Static variable in class ptolemy.vergil.debugger.BreakpointConfigurer
Firing event type labels.
_firingEventTypes - Static variable in class ptolemy.vergil.debugger.BreakpointConfigurer
FiringEventTypes that the user can set breakpoints on.
_firingVector - Variable in class ptolemy.domains.sdf.kernel.SDFScheduler
A map from actors to an integer representing the number of times the actor will fire.
_firstFiring - Variable in class ptolemy.actor.lib.io.LineReader
First firing indicator.
_firstOutputProduced - Variable in class ptolemy.actor.lib.Clock
Deprecated.
Indicator of whether the first output has been produced.
_firstOutputProduced - Variable in class ptolemy.actor.lib.DiscreteClock
Indicator of whether the first output has been produced.
_flipPortsHorizontal - Variable in class ptolemy.vergil.actor.ActorController
An action that handles flipping the ports horizontally.
_flipPortsVertical - Variable in class ptolemy.vergil.actor.ActorController
An action that handles flipping the ports vertically.
_floydWarshallComputation(int, int, int) - Method in class ptolemy.graph.analysis.strategy.FloydWarshallAllPairShortestPathStrategy
The FloydWarshall computation associated with this, analysis.
_floydWarshallComputation(int, int, int) - Method in class ptolemy.graph.analysis.strategy.FloydWarshallStrategy
Derived classed need to override the _floydWarshallComputation method of this class to provide the correct functionality.
_floydWarshallComputation(int, int, int) - Method in class ptolemy.graph.analysis.strategy.FloydWarshallTransitiveClosureStrategy
Overrides the computation associated with the implementation of the Floyd-Warshall algorithm, for the purpose of computing the transitive closure.
_flushValue - Variable in class ptolemy.actor.lib.io.LineWriter
If true, flush the writer after every write.
_foreground - Variable in class ptolemy.plot.PlotBox
Color of the foreground, settable from HTML.
_form - Variable in class ptolemy.data.expr.ASTPtMatrixConstructNode
The form of the matrix construction.
_formalParameters - Variable in class ptolemy.data.expr.ParseTreeFreeVariableRenamer
Formal parameters within a function definition.
_FORMAT_TYPE_CATEGORY - Variable in class org.kepler.ddp.actor.pattern.AtomicPatternActor
The configuration property name for the format type.
_formatProperties - Variable in class org.kepler.ddp.actor.pattern.AtomicPatternActor
A list of properties of format types from the config file.
_formatTypeStr - Variable in class org.kepler.ddp.actor.pattern.AtomicPatternActor
The string value of the format type.
_forward - Variable in class ptolemy.actor.lib.Lattice
Forward prediction errors.
_forwardCache - Variable in class ptolemy.actor.lib.Lattice
Cache of forward prediction errors.
_forwardDependencies - Variable in class ptolemy.actor.util.CausalityInterfaceForComposites
Computed dependencies between input ports and output ports of the associated actor.
_forwardGEONId - Variable in class org.kepler.dataproxy.datasource.geon.GEONShpResource
 
_forwardPrunedDependencies - Variable in class ptolemy.actor.util.DefaultCausalityInterface
A record of removed dependencies from input to output, if any.
_fragment - Variable in class ptolemy.actor.gui.MoMLApplet
The fragment of the modelURL, if any.
_frame - Variable in class org.kepler.gui.AbstractDialogTab
 
_frame - Variable in class org.kepler.gui.frame.MultiCompositeTableau
The frame displaying the MultiCompositeActor.
_frame - Variable in class org.kepler.gui.TabbedDialog
 
_frame - Variable in class org.kepler.profiling.gui.ViewWatchingTabPane
The parent frame.
_frame - Variable in class ptolemy.actor.gui.AbstractPlaceableActor
The associated frame.
_frame - Variable in class ptolemy.actor.gui.AbstractPlaceableJavaSE
The associated frame.
_frame - Variable in class ptolemy.actor.lib.gui.PlotterBaseJavaSE
Frame into which plot is placed, if any.
_function - Variable in class ptolemy.actor.lib.logic.LogicFunction
Deprecated.
An indicator for the function to compute.
_function - Variable in class ptolemy.actor.lib.logic.LogicGate
An indicator for the function to compute.
_functionCall(String, Type[], Object[]) - Method in class ptolemy.data.expr.ParseTreeEvaluator
Evaluate the specified function.
_generateAllChildren(ASTPtRootNode) - Method in class ptolemy.data.expr.CParseTreeCodeGenerator
Loop through all of the children of this node, visiting each one of them, which will cause their token value to be determined.
_generateChild(ASTPtRootNode, int) - Method in class ptolemy.data.expr.CParseTreeCodeGenerator
Visit the child with the given index of the given node.
_generateCodeMethod - Static variable in class ptolemy.util.test.junit.AutoCGTests
The GenericCodeGenerator.generateCode(String[]) method.
_generateGaussian() - Method in class ptolemy.domains.continuous.lib.BandlimitedNoise
Generate a new random number.
_generateRandomNumber() - Method in class org.kepler.date.RandomDate
Generate a new random date.
_generateRandomNumber() - Method in class ptolemy.actor.lib.Bernoulli
Generate a new random number.
_generateRandomNumber() - Method in class ptolemy.actor.lib.colt.ColtBeta
Generate a new random number.
_generateRandomNumber() - Method in class ptolemy.actor.lib.colt.ColtBinomial
Generate a new random number.
_generateRandomNumber() - Method in class ptolemy.actor.lib.colt.ColtBinomialSelector
Generate a new random number.
_generateRandomNumber() - Method in class ptolemy.actor.lib.colt.ColtBreitWigner
Generate a new random number.
_generateRandomNumber() - Method in class ptolemy.actor.lib.colt.ColtChiSquare
Generate a new random number.
_generateRandomNumber() - Method in class ptolemy.actor.lib.colt.ColtExponential
Generate a new random number.
_generateRandomNumber() - Method in class ptolemy.actor.lib.colt.ColtExponentialPower
Generate a new random number.
_generateRandomNumber() - Method in class ptolemy.actor.lib.colt.ColtGamma
Generate a new random number.
_generateRandomNumber() - Method in class ptolemy.actor.lib.colt.ColtHyperGeometric
Generate a new random number.
_generateRandomNumber() - Method in class ptolemy.actor.lib.colt.ColtLogarithmic
Generate a new random number.
_generateRandomNumber() - Method in class ptolemy.actor.lib.colt.ColtNegativeBinomial
Generate a new random number.
_generateRandomNumber() - Method in class ptolemy.actor.lib.colt.ColtNormal
Generate a new random number.
_generateRandomNumber() - Method in class ptolemy.actor.lib.colt.ColtPoisson
Generate a new random number.
_generateRandomNumber() - Method in class ptolemy.actor.lib.colt.ColtPoissonSlow
Generate a new random number.
_generateRandomNumber() - Method in class ptolemy.actor.lib.colt.ColtStudentT
Generate a new random number.
_generateRandomNumber() - Method in class ptolemy.actor.lib.colt.ColtVonMises
Generate a new random number.
_generateRandomNumber() - Method in class ptolemy.actor.lib.colt.ColtZeta
Generate a new random number.
_generateRandomNumber() - Method in class ptolemy.actor.lib.DiscreteRandomSource
Choose one of the tokens in values randomly, using the pmf parameter to select one.
_generateRandomNumber() - Method in class ptolemy.actor.lib.Gaussian
Generate a new random number.
_generateRandomNumber() - Method in class ptolemy.actor.lib.PoissonClock
Generate a new random number.
_generateRandomNumber() - Method in class ptolemy.actor.lib.RandomInteger
Generate a new random integer.
_generateRandomNumber() - Method in class ptolemy.actor.lib.RandomSource
Generate a new random number.
_generateRandomNumber() - Method in class ptolemy.actor.lib.Rician
Generate a new random number.
_generateRandomNumber() - Method in class ptolemy.actor.lib.Triangular
Generate a new random number.
_generateRandomNumber() - Method in class ptolemy.actor.lib.Uniform
Generate a new random number.
_generateRandomNumber() - Method in class ptolemy.domains.continuous.kernel.Noise
Generate a new random number.
_generateRandomNumber() - Method in class ptolemy.domains.continuous.lib.BandlimitedNoise
Generate a new random number.
_generatorSeed - Variable in class ptolemy.actor.lib.RandomSource
The current value of the seed parameter.
_GENERIC_INOUT - Static variable in class ptolemy.vergil.actor.ExternalIOPortController
Prototype inout port.
_GENERIC_INOUT_MULTIPORT - Static variable in class ptolemy.vergil.actor.ExternalIOPortController
Prototype inout multiport.
_GENERIC_INPUT - Static variable in class ptolemy.vergil.actor.ExternalIOPortController
Prototype input port.
_GENERIC_INPUT_MULTIPORT - Static variable in class ptolemy.vergil.actor.ExternalIOPortController
Prototype input multiport.
_GENERIC_OUTPUT - Static variable in class ptolemy.vergil.actor.ExternalIOPortController
Prototype output port.
_GENERIC_OUTPUT_MULTIPORT - Static variable in class ptolemy.vergil.actor.ExternalIOPortController
Prototype output multiport.
_getActiveThreadsCount() - Method in class ptolemy.actor.process.ProcessDirector
Return the number of active threads under the control of this director.
_getActorStatus(Actor) - Method in class ptolemy.domains.ddf.kernel.DDFDirector
Determine actor enabling status.
_getAnimationMenuText() - Method in class ptolemy.vergil.modal.FSMGraphFrame
Return the text to be used in the animation menu item.
_getBackground() - Method in class ptolemy.gui.BasicJApplet
Deprecated.
Use the public method getBackground() instead.
_getBackgroundSize() - Method in class ptolemy.vergil.icon.NameIcon
Return the background size.
_getBlockedThreadsCount() - Method in class ptolemy.actor.process.ProcessDirector
Return the number of threads that are currently blocked.
_getCardinality(Port) - Static method in class ptolemy.vergil.actor.IOPortController
Deprecated.
Use public getCardinality() method instead
_getCenter(JGraph) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Return the center location of the visible part of the pane for a JGraph.
_getChangesForTimespan(Date, Date, String, String) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get changes performed on a host within a timespan.
_getChangesSince(Date, String, String) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get changes performed since a specific time.
_getChannelForIdentifier(String) - Method in class ptolemy.domains.modal.kernel.FSMActor
Given an identifier, return a channel number i if the identifier is of the form portName_i, portName_i_isPresent, portName_iArray.
_getClearAllErrorHighlightsChangeRequest() - Method in class ptolemy.vergil.basic.BasicGraphController
Return a change request that clears all the highlights.
_getComponent(String) - Method in class ptolemy.actor.gui.run.CustomizableRunPane
Return a component with the specified name.
_getComponentType() - Method in class ptolemy.vergil.actor.ActorController
Get the class label of the component.
_getComponentType() - Method in class ptolemy.vergil.actor.IOPortController
Get the class label of the component.
_getComponentType() - Method in class ptolemy.vergil.kernel.AttributeController
Get the class label of the component.
_getCompositeFigure(Figure) - Static method in class ptolemy.vergil.basic.LocatableNodeController
Get the CompositeFigure from the given Figure.
_getConnection(String) - Method in class org.kepler.util.sql.DatabaseType
Get a connection to the database.
_getConnection(String, String, String, String, String) - Method in class org.kepler.util.sql.DatabaseType
Get a connection to the database.
_getConnection(String) - Method in class org.kepler.util.sql.HSQL
Get a connection to the database.
_getConnection(String, String, String, String, String) - Method in class org.kepler.util.sql.HSQL
Get a connection to the database.
_getContainedObject(NamedObj, String) - Method in class ptolemy.kernel.ComponentEntity
Get an entity with the specified name in the specified container.
_getContainedObject(NamedObj, String) - Method in class ptolemy.kernel.Port
Get a port with the specified name in the specified container.
_getContainedObject(NamedObj, String) - Method in class ptolemy.kernel.Relation
Get a relation with the specified name in the specified container.
_getContainedObject(NamedObj, String) - Method in class ptolemy.kernel.util.Attribute
Get an attribute with the specified name in the specified container.
_getContainedObject(NamedObj, String) - Method in class ptolemy.kernel.util.NamedObj
Get an object with the specified name in the specified container.
_getContainerId(Nameable) - Method in class org.kepler.provenance.sql.SQLRecording
Find the container id of an entity.
_getContainerId(Nameable) - Method in class org.kepler.provenance.sql.SQLRecordingV8
Find the container id of an entity.
_getConversion(Class, Type) - Static method in class ptolemy.data.expr.CachedMethod
Return a conversion to convert the second argument into the class given by the first argument.
_getCount() - Static method in class ptolemy.vergil.basic.export.test.junit.ExportModelJUnitTest
Get the number of times RunExportModel has been invoked.
_getCreateTableSuffix() - Method in class org.kepler.util.sql.DatabaseType
Get any suffix used when creating tables.
_getCreateTableSuffix() - Method in class org.kepler.util.sql.MySQL
Get any suffix used when creating tables.
_getCurrentDirectory() - Method in class ptolemy.gui.Top
Return the current directory.
_getCurrentExpression() - Method in class ptolemy.actor.parameters.PortParameter
Get the persistent expression as a string, to be used to export to MoML.
_getCurrentExpression() - Method in class ptolemy.data.expr.Variable
Get the current expression as a string, to be used to export to MoML.
_getCurrentInputPosition() - Method in class ptolemy.actor.lib.SingleTokenCommutator
Get the current input position.
_getCurrentStepSize() - Method in class ptolemy.domains.continuous.kernel.ContinuousDirector
Return the current step size.
_getCurrentTime() - Method in class ptolemy.actor.lib.WallClockTime
Get the elapsed time since the model starts.
_getDataMD5s() - Method in class org.kepler.provenance.sql.SQLQueryV8
Get all the data MD5 checksums.
_getDebugMenuListener() - Method in class ptolemy.vergil.modal.FSMGraphFrame
Return a new DebugMenuListener.
_getDefaultIconImage() - Method in class ptolemy.actor.gui.TableauFrame
Return the default icon image, or null if there is none.
_getDefaultShape() - Method in class ptolemy.vergil.kernel.attributes.ArcAttribute
Return a circle.
_getDefaultShape() - Method in class ptolemy.vergil.kernel.attributes.ArrowAttribute
Return a default arrow.
_getDefaultShape() - Method in class ptolemy.vergil.kernel.attributes.EllipseAttribute
Return a circle.
_getDefaultShape() - Method in class ptolemy.vergil.kernel.attributes.LineAttribute
Return a line.
_getDefaultShape() - Method in class ptolemy.vergil.kernel.attributes.ShapeAttribute
Return the default shape to use for this icon.
_getDepthOfActor(Actor) - Method in class ptolemy.domains.de.kernel.DEDirector
Return the depth of an actor.
_getDepthOfIOPort(IOPort) - Method in class ptolemy.domains.de.kernel.DEDirector
Return the depth of an ioPort.
_getDestination(String) - Method in class ptolemy.domains.modal.kernel.AbstractActionsAttribute
Given a destination name, return a NamedObj that matches that destination.
_getDestination(String) - Method in class ptolemy.domains.modal.kernel.CommitActionsAttribute
Given a destination name, return a NamedObj that matches that destination.
_getDestination(String) - Method in class ptolemy.domains.modal.kernel.OutputActionsAttribute
Given a destination name, return a NamedObj that matches that destination.
_getDirection(int) - Static method in class ptolemy.vergil.actor.IOPortController
Deprecated.
Use public getDirection() method instead
_getDirector() - Method in class ptolemy.actor.process.BranchController
Return the director that controls the execution of this branch controller's containing composite actor.
_getDirectory() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Deprecated.
_getDriverName() - Method in class org.kepler.util.sql.DatabaseType
Get the driver class name.
_getDriverName() - Method in class org.kepler.util.sql.HSQL
Get the driver class name.
_getDriverName() - Method in class org.kepler.util.sql.MySQL
Get the driver class name.
_getDriverName() - Method in class org.kepler.util.sql.Oracle
Get the driver class name.
_getDriverName() - Method in class org.kepler.util.sql.PostgreSQL
Get the driver class name.
_getEnclosingDomainActor() - Method in class ptolemy.domains.modal.kernel.MultirateFSMDirector
If the container of this director does not have an MultirateFSMDirector as its executive director, then return the container.
_getEntitiesForChange(int) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the entities for a workflow change.
_getEntityName(String) - Method in class org.kepler.provenance.sql.SQLQueryV8
Given a fully-qualified entity name, return the name as it would appear in the entity table.
_getExceptionMessage(Exception) - Method in class org.kepler.provenance.Recording
 
_getExecutionsForTimespan(Date, Date, String, String) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get executions for a worfkflow run on a host within a timespan.
_getExecutionsStartedSince(Date, boolean, String, String) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get executions started since a specific time.
_getExternalPortDirection(Port) - Static method in class ptolemy.vergil.basic.layout.kieler.PtolemyModelUtil
Get the direction of the edge anchor point of an external port inside a composite actor.
_getFigureUnder(Point2D) - Method in class ptolemy.vergil.basic.EditorDropTargetListener
Return the figure that is an icon of a NamedObj and is under the specified point, or null if there is none.
_getFill() - Method in class ptolemy.vergil.icon.NameIcon
Return the paint to use to fill the icon.
_getFill() - Method in class ptolemy.vergil.modal.StateIcon
Return the paint to use to fill the icon.
_getFiringCount(Entity) - Method in class ptolemy.domains.sdf.kernel.SDFScheduler
Return the number of firings associated with the given entity.
_getFullName(Nameable) - Method in exception ptolemy.actor.process.TerminateProcessException
Get the name of a Nameable object.
_getFullNameFromEntityName(String, String) - Method in class org.kepler.provenance.sql.SQLQueryV8
Given a name from the entity table, return the fully-qualified name.
_getGraphController() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Return the graph controller associated with this frame.
_getGraphModel() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Return the graph model associated with this frame.
_getHelpURL() - Method in class ptolemy.actor.gui.OpenInstanceDialog
Return a URL that points to the help page, which for this dialog is the expressions documentation.
_getHelpURL() - Method in class ptolemy.actor.gui.PortConfigurerDialog
Return a URL that points to the help page.
_getHelpURL() - Method in class ptolemy.actor.gui.PtolemyDialog
Get the URL that is the help for this dialog.
_getHelpURL() - Method in class ptolemy.vergil.basic.DependencyResultsDialog
Return a URL that points to the help page.
_getHelpURL() - Method in class ptolemy.vergil.basic.SearchResultsDialog
Return a URL that points to the help page.
_getHelpURL() - Method in class ptolemy.vergil.unit.UnitConstraintsDialog
Return the help URL.
_getHelpURL() - Method in class ptolemy.vergil.unit.UnitSolverDialog
 
_getIconVisibleLocations() - Method in class ptolemy.vergil.basic.export.html.ExportHTMLAction
Return a list of data structures with one entry for each visible entity and attribute.
_getImplementation() - Method in class ptolemy.actor.lib.gui.Display
Get the right instance of the implementation depending upon the of the dependency specified through dependency injection.
_getImplementation() - Method in class ptolemy.actor.lib.gui.PlotterBase
Get the right instance of the implementation depending upon the of the dependency specified through dependency injection.
_getImplementation() - Method in class ptolemy.actor.lib.image.ImageDisplay
Get the right instance of the implementation depending upon the of the dependency specified through dependency injection.
_getImplementation() - Method in class ptolemy.domains.sdf.lib.vq.ImageDisplay
Get the right instance of the implementation depending upon the of the dependency specified through dependency injection.
_getIndentPrefix(int) - Static method in class ptolemy.kernel.util.NamedObj
Return a number of spaces that is proportional to the argument.
_getInitializableContainer() - Method in class ptolemy.actor.AbstractInitializableAttribute
Return the first Initializable encountered above this in the hierarchy that will be initialized (i.e., it is either an atomic actor or an opaque composite actor).
_getInitializableContainer() - Method in class ptolemy.actor.lib.ExceptionManager
Return the first Initializable encountered above this in the hierarchy that will be initialized (i.e., it is either an atomic actor or an opaque composite actor).
_getInitializableContainer() - Method in class ptolemy.data.expr.AbstractInitializableParameter
Return the first Initializable encountered above this in the hierarchy that will be initialized (i.e., it is either an atomic actor or an opaque composite actor).
_getInputString(int) - Method in class org.kepler.actor.gui.XMLViewer
Return a nicely formatted string describing XML input on channel i.
_getInputString(int) - Method in class ptolemy.actor.lib.gui.Display
Return a string describing the input on channel i.
_getInputString(int) - Method in class ptolemy.actor.lib.gui.TimedDisplay
Return a string describing the model time of the containing director a colon and the input on channel i.
_getInputToken(int) - Method in class ptolemy.actor.lib.gui.MonitorValue
Return a token from the named input channel.
_getInputToken(int) - Method in class ptolemy.actor.lib.gui.TimedMonitorValue
Return a token from the named input channel.
_getInsideWidth(IORelation) - Method in class ptolemy.actor.IOPort
Return the sums of the widths of the relations linked on the inside, except the specified relation.
_getInsideWidth(IORelation) - Method in class ptolemy.actor.SubscriptionAggregatorPort
Override the base class to always return 1.
_getInt(String, ConfigurationProperty) - Static method in class org.kepler.util.StaticResources
Get the integer (int) property denoted by the propertyKey.
_getInternalComplexMatrix() - Method in class ptolemy.data.ComplexMatrixToken
Return a reference to the internal 2-D matrix of complex numbers that represents this Token.
_getInternalDoubleArray() - Method in class ptolemy.data.DoubleMatrixToken
Return a reference to the internal 2-D matrix of doubles that represents this Token.
_getInternalIntArray() - Method in class ptolemy.data.IntMatrixToken
Return a reference to the internal 2-D matrix of ints that represents this Token.
_getInternalLongArray() - Method in class ptolemy.data.LongMatrixToken
Return a reference to the internal 2-D matrix of longs that represents this Token.
_getIntResults(PreparedStatement, int) - Method in class org.kepler.provenance.sql.SQLQueryV8
Convenience routine to get a list of integer SQL results.
_getJarList() - Method in class org.kepler.ddp.director.DDPEngine
Get a list of jars required for director to start.
_getJDBCUrl(String, String, String) - Method in class org.kepler.util.sql.DatabaseType
Get a JDBC URL.
_getJDBCUrl(String, String, String) - Method in class org.kepler.util.sql.HSQL
Get a JDBC URL.
_getJDBCUrl(String, String, String) - Method in class org.kepler.util.sql.MySQL
Get a JDBC URL.
_getJDBCUrl(String, String, String) - Method in class org.kepler.util.sql.Oracle
Get a JDBC URL.
_getJDBCUrl(String, String, String) - Method in class org.kepler.util.sql.PostgreSQL
Get a JDBC URL.
_getLabel(CompositeFigure, String) - Method in class ptolemy.vergil.icon.NameIcon
Get the label to put on the specified background figure based on the specified name.
_getLastChangeTime(String, String) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the last change time for a workflow.
_getLastChangeTime(int, String) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the last change time for a workflow.
_getLastChosenTransition() - Method in class ptolemy.domains.modal.kernel.FSMDirector
Return the last chosen transitions.
_getLastExecutionId(KeplerLSID) - Method in class org.kepler.provenance.DefaultQuery
Get the last execution id for a workflow.
_getLastExecutionStartTime(String, String) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the last execution start time.
_getLastExecutionStartTime(int, String) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the last execution start time.
_getLayouterPool() - Static method in class ptolemy.vergil.basic.layout.kieler.KielerLayout
Return a pool for layout provider instances that can be reused in subsequent layout runs.
_getLineWidth() - Method in class ptolemy.vergil.icon.NameIcon
Return the line width to use in rendering the box.
_getLineWidth() - Method in class ptolemy.vergil.modal.StateIcon
Return the line width to use in rendering the box.
_getLinkSet() - Method in class ptolemy.vergil.actor.ActorGraphModel
Get an unmodifiable copy of the link set.
_getLocalNameForName(String) - Method in class ptolemy.data.expr.CParseTreeCodeGenerator
Get the local name for this this name.
_getLocation(NamedObj) - Method in class ptolemy.vergil.basic.AbstractBasicGraphModel
Return the location attribute contained in the given object, or a new location contained in the given object if there was no location.
_getLocation(NamedObj) - Method in class ptolemy.vergil.kernel.CompositePtolemyModel
Return the location attribute contained in the given object, or a new location contained in the given object if there was no location.
_getManagedActor() - Method in class ptolemy.actor.lib.hoc.ExecuteActor
Return the actor whose life cycle is being managed by this actor, which is the most recently received actor on the actor input port.
_getManagedActor() - Method in class ptolemy.actor.lib.hoc.LifeCycleManager
Return the actor whose life cycle is being managed by this actor.
_getManager() - Method in class ptolemy.vergil.basic.RunnableGraphController
Get the manager for the top-level of the associated model, if there is one, or create one if there is not.
_getMaxParameterValueSize() - Method in class org.kepler.provenance.sql.SQLRecording
Get the maximum size of a parameter value that can be stored in the database.
_getMaxTokenDataSize() - Method in class org.kepler.provenance.sql.SQLRecording
Get the maximum size of token data that can be stored in the database.
_getMaxTokenDataSize() - Method in class org.kepler.provenance.sql.SQLRecordingV8
Get the maximum size of token data that can be stored in the database.
_getMethodReturnType(Class<?>, String, Type[]) - Method in class ptolemy.data.expr.ParseTreeTypeInference
Get the return type of a method belonging to the specified class, or the type of a field belonging to it.
_getModelPlan() - Method in class org.kepler.spark.director.SparkEngine
Constructs a SparkJob from the model.
_getModelPlan() - Method in class org.kepler.stratosphere.director.StratosphereEngine
Constructs a PACT Plan from the model.
_getMoML() - Method in class ptolemy.vergil.toolbox.PtolemyTransferable
Return a string with a MoML description of all the objects in the list.
_getMultiportOffsets(Port, KShapeLayout, int, int, boolean) - Static method in class ptolemy.vergil.basic.layout.kieler.KielerLayout
For a given Ptolemy port, its channel index in a multiport, and the maximum index in that multiport, calculate its offset in X and Y coordinates.
_getName() - Method in class org.kepler.gui.KeplerGraphFrame
Get the name of this object.
_getName() - Method in class ptolemy.actor.gui.TableauFrame
Get the name of this object, which in this class is the URI associated with the effigy, or the string "Unnamed" if none.
_getName() - Method in class ptolemy.actor.gui.WelcomeWindow
Get the name of this object, which in this case is the string "Welcome".
_getName(Nameable) - Method in exception ptolemy.actor.process.TerminateProcessException
Get the name of a Nameable object.
_getName() - Method in class ptolemy.gui.Top
Get the name of this object, which in this base class is either the name of the file that has been associated with this object, or the string "Unnamed" if none.
_getNameable(Throwable) - Method in class ptolemy.actor.gui.ActorGraphicalMessageHandler
Given a throwable, return the first Nameable (if any).
_getNameableFullName(Nameable) - Method in class org.kepler.provenance.Recording
Get a Nameable's full name including the name of the containing workflow.
_getNameSpace() - Method in class org.kepler.sms.NamedOntClass
 
_getNextActorToFire() - Method in class ptolemy.domains.de.kernel.DEDirector
Dequeue the events that have the smallest tag from the event queue.
_getNextPort() - Method in class ptolemy.actor.lib.OrderedMerge
Return the port that this actor will read from on the next invocation of the fire() method.
_getObjectFromFigure(Figure) - Method in class org.kepler.gui.KeplerSchematicContextMenuFactory
 
_getObjectFromFigure(Figure) - Method in class ptolemy.vergil.basic.BasicGraphController.SchematicContextMenuFactory
 
_getObjectFromFigure(Figure) - Method in class ptolemy.vergil.toolbox.PtolemyMenuFactory
Return the Ptolemy object that the given figure represents.
_getObjectUnder(Point2D) - Method in class ptolemy.vergil.basic.EditorDropTargetListener
Return the object under the specified point, or null if there is none.
_getODESolver() - Method in class ptolemy.domains.continuous.kernel.ContinuousDirector
Return the ODE solver used to resolve states by the director.
_getOutput() - Method in class org.kepler.spark.operator.Operator
Read the inputs and execute the operator to generate the output.
_getOutsideWidth(IORelation) - Method in class ptolemy.actor.IOPort
Return the sums of the widths of the relations linked on the outside, except the specified relation.
_getParameterNameValues(PreparedStatement) - Static method in class org.kepler.provenance.sql.SQLQueryV8
A convenience method that executes a query returning parameter name value pairs.
_getParametersInHierarchy(NamedObj) - Static method in class org.kepler.ddp.director.DDPEngine
Get the parameters for a NamedObj and all its containers.
_getParent(KEdge) - Static method in class ptolemy.vergil.basic.layout.kieler.KielerGraphUtil
Get the parent node of an KIELER KEdge.
_getParserScope() - Method in class ptolemy.domains.modal.kernel.AbstractActionsAttribute
Return a parser scope used to evaluate or type-check this action.
_getPort(String) - Method in class org.kepler.sms.KeplerRefinementIOPort
 
_getPort(String, String, String) - Method in class org.kepler.util.sql.DatabaseType
Get a port number.
_getPort(String, String, String) - Method in class org.kepler.util.sql.HSQL
Get the port for a database name.
_getPortForIdentifier(String) - Method in class ptolemy.domains.modal.kernel.FSMActor
Get the port for the specified identifier, which may be of form portName, portName_isPresent, portName_i, portName_i_isPresent, etc.
_getReceiversLinkedToGroup(IORelation, int) - Method in class ptolemy.actor.IOPort
If the port is an input, return receivers that handle incoming channels from the specified relation or any relation in its relation group.
_getReferencedObj(RelativeLocation) - Static method in class ptolemy.vergil.basic.layout.kieler.PtolemyModelUtil
Find the reference object for the given relative location.
_getRefinementClasses() - Method in class ptolemy.domains.modal.modal.ModalController
Return a map from the classes of the entities to be dropped into a state and the class names of the refinements that can be used to contain those entities.
_getRefinementClasses() - Method in class ptolemy.domains.modal.modal.ModalRefinement
Return a map from the classes of the entities to be dropped into a state and the class names of the refinements that can be used to contain those entities.
_getRefinementRateVariables(IOPort, String) - Method in class ptolemy.domains.modal.kernel.MultirateFSMDirector
Return the set of variables with the given parameter name that are contained by ports connected to the given port on the inside.
_getRelationGroups(Set<Relation>) - Static method in class ptolemy.vergil.basic.layout.kieler.PtolemyModelUtil
For a set of relations get a set of relation groups, i.e. for each relation construct a list of relations that are all interconnected, either directly or indirectly.
_getRepresentative() - Method in class ptolemy.data.type.ArrayType
Return a static instance of ArrayType.
_getRepresentative() - Method in class ptolemy.data.type.FixType
Return a static instance of this structured type.
_getRepresentative() - Method in class ptolemy.data.type.FunctionType
Return a static instance of FunctionType.
_getRepresentative() - Method in class ptolemy.data.type.MatrixType
Return a static instance of this structured type.
_getRepresentative() - Method in class ptolemy.data.type.ObjectType
Return a static instance of this object type.
_getRepresentative() - Method in class ptolemy.data.type.RecordType
Return a static instance of RecordType.
_getRepresentative() - Method in class ptolemy.data.type.StructuredType
Return a static instance of this structured type.
_getRepresentative() - Method in class ptolemy.data.type.TupleType
Return a static instance of TupleType.
_getRepresentative() - Method in class ptolemy.data.type.UnionType
Return a static instance of RecordType.
_getRightComponent() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Return the right component on which graph editing occurs.
_getRound() - Method in class ptolemy.domains.continuous.kernel.ContinuousODESolver
Return the current round.
_getRound() - Method in class ptolemy.domains.continuous.kernel.solver.ExplicitRK23Solver
Return the current round.
_getRound() - Method in class ptolemy.domains.continuous.kernel.solver.ExplicitRK45Solver
Return the current round.
_getRoundTimeIncrement() - Method in class ptolemy.domains.continuous.kernel.ContinuousODESolver
Get the current round factor.
_getRoundTimeIncrement() - Method in class ptolemy.domains.continuous.kernel.solver.ExplicitRK23Solver
Get the current round factor.
_getRoundTimeIncrement() - Method in class ptolemy.domains.continuous.kernel.solver.ExplicitRK45Solver
Get the current round factor.
_getSchedule() - Method in class ptolemy.actor.sched.FixedPointScheduler
Return the schedule.
_getSchedule() - Method in class ptolemy.actor.sched.Scheduler
Reschedule the model.
_getSchedule() - Method in class ptolemy.domains.sdf.kernel.CachedSDFScheduler
Return the scheduling sequence.
_getSchedule() - Method in class ptolemy.domains.sdf.kernel.SDFScheduler
Return the scheduling sequence.
_getSchedule() - Method in class ptolemy.domains.sdf.optimize.OptimizingSDFScheduler
Return the scheduling sequence.
_getSelectedRowInfo() - Method in class org.kepler.profiling.gui.ExecutionMonitorPanel
Get the ActorInfo for the selected row in the table.
_getSelectionSet() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Return a set of instances of NamedObj representing the objects that are currently selected.
_getStateRefinementsToPostfire() - Method in class ptolemy.domains.modal.kernel.FSMActor
Return the list used to keep track of refinements that have been fired.
_getStateRefinementsToPostfire() - Method in class ptolemy.domains.modal.kernel.FSMDirector
Return the list used to keep track of refinements that have been fired.
_getStoppedThreadsCount() - Method in class ptolemy.actor.process.ProcessDirector
Return the number of threads that are currently stopped.
_getString(String, ConfigurationProperty) - Static method in class org.kepler.util.StaticResources
Get the String property denoted by the propertyKey.
_getStringResults(PreparedStatement, int) - Method in class org.kepler.provenance.sql.SQLQueryV8
Convenience routine to get a list of string SQL results.
_getStringResults(Statement, String, int) - Method in class org.kepler.provenance.sql.SQLQueryV8
Convenience routine to get a list of string SQL results.
_getText() - Method in class ptolemy.vergil.kernel.attributes.AttributeExpressionAttribute
Return the a new string that contains the expression of the referred to attribute.
_getText() - Method in class ptolemy.vergil.kernel.attributes.AttributeValueAttribute
Return a new string that contains the expression of the referred to attribute.
_getTransitionRefinementsToPostfire() - Method in class ptolemy.domains.modal.kernel.FSMActor
Return the list used to keep track of refinements that have been fired.
_getTransitionRefinementsToPostfire() - Method in class ptolemy.domains.modal.kernel.FSMDirector
Return the list used to keep track of refinements that have been fired.
_getTypeForName(String) - Method in class ptolemy.data.expr.ParseTreeTypeInference
Return the type of the identifier with the given name.
_getTypeString(Column) - Method in class org.kepler.util.sql.DatabaseType
Get the SQL string of a column type.
_getTypeString(Column) - Method in class org.kepler.util.sql.HSQL
Get the SQL string of a column type.
_getTypeString(Column) - Method in class org.kepler.util.sql.MySQL
Get the SQL string of a column type.
_getTypeString(Column) - Method in class org.kepler.util.sql.Oracle
Get the SQL string of a column type.
_getTypeString(Column) - Method in class org.kepler.util.sql.PostgreSQL
Get the SQL string of a column type.
_getUpperLeftCorner(KNode) - Static method in class ptolemy.vergil.basic.layout.kieler.KielerGraphUtil
Get the upper left corner of the real bounding box of the contents of a given KIELER node.
_getValue(int) - Method in class ptolemy.actor.lib.Clock
Deprecated.
Get the specified output value, checking the form of the values parameter.
_getValue(int) - Method in class ptolemy.actor.lib.DiscreteClock
Get the specified output value, checking the form of the values parameter.
_getVersion() - Method in class ptolemy.actor.sched.ScheduleElement
Return the current version of this schedule element.
_getVersion() - Method in class ptolemy.graph.sched.ScheduleElement
Return the current version of this schedule element.
_getVisibleCanvasRectangle(JGraph) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Return the rectangle representing the visible part of the pane for a JGraph, transformed into canvas coordinates.
_getVisibleRectangle(JGraph) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Return the rectangle representing the visible part of the pane for a JGraph, in pixel coordinates on the screen.
_getWorkflow() - Method in class org.kepler.profiling.gui.WorkflowRunOutlineTabPane
Get the workflow from the execution LSID.
_getWorkflow(String) - Method in class org.kepler.provenance.sql.SQLQueryV8
Get the id for a workflow.
_getWorkflowId() - Method in class org.kepler.provenance.sql.SQLRecording
Get the internal workflow id.
_getWorkflowId(String) - Method in class org.kepler.provenance.sql.SQLRecording
Get the internal workflow id given a id string.
_getWorkflowId() - Method in class org.kepler.provenance.sql.SQLRecordingV8
Get the internal workflow id.
_global - Variable in class ptolemy.actor.PubSubPort
Cached variable indicating whether publishing or subscribing is global.
_go() - Method in class ptolemy.actor.gui.PtolemyApplet
Execute the model, if the manager is not currently executing.
_graphicsOutputFile - Variable in class ptolemy.actor.lib.r.RExpression
The pathname of the graphics output file.
_graphMenu - Variable in class ptolemy.vergil.basic.BasicGraphFrame
The graph menu.
_graphPanner - Variable in class ptolemy.vergil.basic.BasicGraphFrame
The panner.
_greatestLowerBound(StructuredType) - Method in class ptolemy.data.type.ArrayType
Return the greatest lower bound of this type with the specified type.
_greatestLowerBound(StructuredType) - Method in class ptolemy.data.type.FixType
Return the greatest lower bound of this type with the specified type.
_greatestLowerBound(StructuredType) - Method in class ptolemy.data.type.FunctionType
Return the greatest lower bound of this type with the specified type.
_greatestLowerBound(StructuredType) - Method in class ptolemy.data.type.MatrixType
Return the greatest lower bound of this type with the specified type.
_greatestLowerBound(StructuredType) - Method in class ptolemy.data.type.ObjectType
Return the greatest lower bound of this type with the specified type.
_greatestLowerBound(StructuredType) - Method in class ptolemy.data.type.RecordType
Return the greatest lower bound of this type with the specified type.
_greatestLowerBound(StructuredType) - Method in class ptolemy.data.type.StructuredType
Return the greatest lower bound of this type with the specified type.
_greatestLowerBound(StructuredType) - Method in class ptolemy.data.type.TupleType
Return the greatest lower bound of this type with the specified type.
_greatestLowerBound(StructuredType) - Method in class ptolemy.data.type.UnionType
Return the greatest lower bound of this type with the specified type.
_grid - Variable in class ptolemy.gui.Query
Layout control.
_grid - Variable in class ptolemy.plot.PlotBox
Whether to draw a background grid.
_growDependencies(IOPort, Set<IOPort>, Set<IOPort>) - Method in class ptolemy.actor.util.DefaultCausalityInterface
If the input port is already in the inputs set, do nothing and return.
_grun - Variable in class org.cipres.kepler.GUIRunCIPRes
GUIRun object to invoke external programs.
_handleClosing() - Method in class ptolemy.actor.gui.EditParametersDialog
If the contents of this dialog implements the CloseListener interface, then notify it that the window has closed.
_handleClosing() - Method in class ptolemy.actor.gui.RenameDialog
If the window is closed with anything but Cancel, apply the changes.
_handleClosing() - Method in class ptolemy.gui.ComponentDialog
If the contents of this dialog implements the CloseListener interface, then notify it that the window has closed, unless notification has already been done (it is guaranteed to be done only once).
_handleClosing() - Method in class ptolemy.vergil.debugger.BreakpointConfigurerDialog
Apply the changes if the window is closed with anything but Cancel.
_handleFileData(String) - Method in class ptolemy.actor.lib.io.FileReader
Send the specified string to the output.
_handleFileData(String) - Method in class ptolemy.actor.lib.io.TokenReader
Deprecated.
FIXME: Send the specified string to the output.
_handleResult(AsyncResult<JsonObject>, RoutingContext, JsonObject, long) - Method in class org.kepler.webview.server.handler.RunWorkflowHandler
 
_hasCatalog() - Method in class org.kepler.util.sql.DatabaseType
Returns true if database uses a catalog.
_hasCatalog() - Method in class org.kepler.util.sql.HSQL
Returns true if database uses a catalog.
_hasGeneratedKeys() - Method in class org.kepler.util.sql.DatabaseType
Returns true if database supports auto-generated keys in its prepared statements.
_hasGeneratedKeys() - Method in class org.kepler.util.sql.HSQL
Returns true if database supports auto-generated keys in its prepared statements.
_hasGeneratedKeys() - Method in class org.kepler.util.sql.MySQL
Returns true if database supports auto-generated keys in its prepared statements.
_hasGeneratedKeys() - Method in class org.kepler.util.sql.Oracle
Returns true if database supports auto-generated keys in its prepared statements.
_hasGeneratedKeys() - Method in class org.kepler.util.sql.PostgreSQL
Returns true if database supports auto-generated keys in its prepared statements.
_hasIterationConverged() - Method in class ptolemy.actor.sched.FixedPointDirector
Return true if this iteration has converged.
_hasPortEventListeners - Variable in class ptolemy.actor.IOPort
Flag that is true if there are port event listeners.
_hasSibling - Variable in class ptolemy.domains.modal.modal.TransitionRefinementPort
Flag indicating if this port has a sibling.
_height - Variable in class ptolemy.plot.PlotBox
Width and height of component in pixels.
_heightValue - Variable in class ptolemy.vergil.kernel.attributes.FilledShapeAttribute
Most recently set value of the height parameter.
_help() - Method in class org.kepler.objectmanager.data.db.QBEditor
Display more detailed information than given by _about().
_help() - Method in class org.sdm.spa.gui.DoubleShellTAPTableauFrame
 
_help() - Method in class ptolemy.actor.gui.exec.ExecShellTableau.ExecShellFrame
 
_help() - Method in class ptolemy.actor.gui.ExpressionShellFrame
 
_help() - Method in class ptolemy.actor.gui.ModelFrame
Display more detailed information than given by _about().
_help() - Method in class ptolemy.actor.gui.PlotTableauFrame
Display more detailed information than given by _about().
_help() - Method in class ptolemy.actor.gui.ptjacl.TclShellTableau.TclShellFrame
 
_help() - Method in class ptolemy.actor.gui.PtolemyFrame
Display more detailed information than given by _about().
_help() - Method in class ptolemy.actor.gui.python.PythonShellTableau.PythonShellFrame
 
_help() - Method in class ptolemy.actor.gui.TableauFrame
Display the help file given by the configuration, or if there is none, then the file specified by the public variable helpFile.
_help() - Method in class ptolemy.actor.gui.TextEditor
Display more detailed information than given by _about().
_help() - Method in class ptolemy.gui.Top
Display the same information given by _about().
_help() - Method in class ptolemy.plot.PlotApplication
Display more detailed information than given by _about().
_help() - Method in class ptolemy.plot.PlotBox
Display basic information in its own window.
_help() - Method in class ptolemy.plot.PlotFrame
Display more detailed information than given by _about().
_help() - Method in class ptolemy.plot.plotml.EditablePlotMLApplication
Display more detailed information than given by _about().
_help() - Method in class ptolemy.plot.plotml.HistogramMLApplication
Display more detailed information than given by _about().
_help() - Method in class ptolemy.plot.plotml.PlotMLApplication
Display more detailed information than given by _about().
_help() - Method in class ptolemy.vergil.actor.DocViewer
Display the help file given by the configuration, or if there is none, then the file specified by the public variable helpFile.
_helpAction() - Method in class org.kepler.gui.TabbedDialog
method that is called when user clicks the "Help" button.
_helpButton - Variable in class ptolemy.actor.gui.PtolemyDialog
The help button.
_helpMenu - Variable in class ptolemy.gui.Top
Help menu for this frame.
_helpMenuItems - Variable in class ptolemy.gui.Top
Help menu items.
_hermite(double, double, double, double, double, double, double) - Method in class ptolemy.domains.continuous.lib.Waveform
Return the Hermite curve interpolation.
_hide(Object) - Method in class ptolemy.vergil.actor.ExternalIOPortController
Override the base class to return true if the specified node contains an attribute named "_hideInside".
_hide(Object) - Method in class ptolemy.vergil.basic.LocatableNodeController
In this base class, return true if the specified node contains a parameter named "_hide" with value true or an attribute that is not a parameter named "_hide".
_hideErrorPort - Variable in class org.kepler.dataproxy.datasource.geon.GEONShpResource
 
_hideName - Variable in class ptolemy.actor.lib.Pause
The parameter that hides the name of the actor.
_hideName - Variable in class ptolemy.actor.lib.Stop
The parameter that hides the name of the actor.
_hideNS - Variable in class org.kepler.dataproxy.datasource.geon.GEONDatabaseResource
 
_hideOutput - Variable in class org.kepler.dataproxy.datasource.geon.GEONShpResource
 
_highlightResult(NamedObj) - Method in class ptolemy.vergil.basic.SearchResultsDialog
Highlight the specified object and all its containers to indicate that it matches the search criteria.
_histogram - Variable in class ptolemy.plot.Histogram
A vector of histogram data.
_home - Variable in class ptolemy.actor.lib.r.RExpression
The home.
_HORIZONTAL_PADDING - Static variable in class ptolemy.vergil.icon.TableIcon
The amount of padding to use around the edges.
_horizontalScrollBar - Variable in class org.kepler.gui.KeplerGraphFrame
Horizontal scrollbar.
_icon - Variable in class ptolemy.vergil.basic.export.web.Title
The text icon.
_icon - Variable in class ptolemy.vergil.basic.export.web.WebContent
Icon.
_icon - Variable in class ptolemy.vergil.kernel.attributes.AbstractTextAttribute
The text icon.
_icon - Variable in class ptolemy.vergil.kernel.attributes.ImageAttribute
The image icon.
_icon - Variable in class ptolemy.vergil.kernel.attributes.ShapeAttribute
The shape icon.
_iconCache - Variable in class ptolemy.vergil.icon.EditorIcon
The cached Swing icon.
_id - Variable in class ptolemy.data.expr.ASTPtRootNode
The id.
_idAtt - Variable in class org.kepler.dataproxy.datasource.geon.GEONDatabaseResource
 
_idAtt - Variable in class org.kepler.dataproxy.datasource.geon.GEONShpResource
 
_imageWindowFrame - Variable in class ptolemy.actor.lib.image.ImageDisplayJavaSE
The frame, if one is used.
_implementDeferredConfigurations() - Method in class ptolemy.actor.lib.gui.HistogramPlotter
If configurations have been deferred, implement them now.
_implementDeferredConfigurations() - Method in class ptolemy.actor.lib.gui.PlotterBase
If configurations have been deferred, implement them now.
_IMPORT_MENU_INDEX - Static variable in class ptolemy.gui.Top
Index in the _fileMenuItems array of the Import item.
_importDesignPatternAction - Variable in class ptolemy.vergil.actor.ActorGraphFrame
The action for importing a design pattern.
_importLibraryAction - Variable in class ptolemy.vergil.actor.ActorGraphFrame
The action for importing a library of components.
_inAddPort - Variable in class ptolemy.actor.lib.hoc.ReflectComposite
Flag indicating that we are executing _addPort().
_inAttributeChanged - Variable in class ptolemy.vergil.kernel.attributes.FilledShapeAttribute
Variable used to prevent re-entry into attributeChanged().
_incrementCount() - Static method in class ptolemy.vergil.basic.export.test.junit.ExportModelJUnitTest
Increment the count of the number of times RunExportModel has been invoked.
_incrementLowestWriteCapacityPort() - Method in class ptolemy.domains.pn.kernel.PNDirector
Double the capacity of one of the queues with the smallest capacity belonging to a receiver on which a process is blocked while attempting to write.
_incrementTclFileCount() - Static method in class ptolemy.util.test.junit.TclTests
Increment the count of the number of tcl files visited.
_incrementVersion() - Method in class ptolemy.actor.sched.ScheduleElement
Increment the version of this schedule element and if this schedule element has a parent schedule, increment the version of the parent schedule as well.
_incrementVersion() - Method in class ptolemy.graph.sched.ScheduleElement
Increment the version of this schedule element and if this schedule element has a parent schedule, increment the version of the parent schedule as well.
_index - Variable in class ptolemy.actor.sched.FixedPointDirector
The current index of the model.
_indexOffset - Variable in class ptolemy.domains.modal.kernel.FSMDirector
The _indexOffset is set by FSMActor during initialization of destination refinements upon committing to a reset transition in order to ensure that the destination refinement views its index as one larger than the current index.
_inferAllChildren(ASTPtRootNode) - Method in class ptolemy.data.expr.ParseTreeTypeInference
Loop through all of the children of this node, visiting each one of them, which will cause their token value to be determined.
_inferChild(ASTPtRootNode, int) - Method in class ptolemy.data.expr.ParseTreeTypeInference
Visit the child with the given index of the given node.
_inferredChildType - Variable in class ptolemy.data.expr.ParseTreeTypeInference
 
_informOfDelayBlock() - Method in class ptolemy.domains.pn.kernel.TimedPNDirector
Increment by 1 the count of actors waiting for the time to advance.
_informOfDelayUnblock() - Method in class ptolemy.domains.pn.kernel.TimedPNDirector
Decrease by 1 the count of processes blocked on a delay.
_init() - Method in class org.kepler.provenance.sql.SQLQueryV8
Check the schema version and initialize the prepared statements.
_init(String, Document) - Method in class ptolemy.actor.gui.syntax.SyntaxTextEditor
Initializes an empty text editor with the specified title and document and associated placeable.
_init(String, Document) - Method in class ptolemy.actor.gui.syntax.SyntaxTextEditorForStringAttributes
Initializes an empty text editor with the specified title and document and associated placeable.
_init(String, Document) - Method in class ptolemy.actor.gui.TextEditor
Initializes an empty text editor with the specified title and document and associated placeable.
_init() - Method in class ptolemy.actor.lib.hoc.RunCompositeActor
Set the class name and create the parameters.
_init() - Method in class ptolemy.domains.de.lib.TimedDelay
Deprecated.
Initialize the delay parameter.
_init() - Method in class ptolemy.domains.modal.kernel.FSMActor
 
_initActorGraphFrame() - Method in class ptolemy.vergil.actor.ActorGraphFrame
Initialize this class.
_initBasicGraphFrame() - Method in class org.kepler.gui.KeplerGraphFrame
Override BasicGraphFrame.
_initBasicGraphFrame() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Initialize this BasicGraphFrame.
_initBasicGraphFrameActions() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Add the cut, copy, paste, move to front, mode to back actions.
_initBasicGraphFrameInitialization() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Common initialization for a BasicGraphFrame.
_initBasicGraphFrameRightComponent() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Set up the right component.
_initBasicGraphFrameRightComponentMouseListeners() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Add listeners to the right component.
_initBasicGraphFrameSetZoomAndPan() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Set the zoom factor and the pan.
_initBasicGraphFrameSetZoomAndPane(NamedObj, JGraph) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Set the zoom factor and the pan for a specific model and JGraph.
_initBasicGraphFrameToolBarZoomButtons() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Add tool bar buttons.
_initContextMenu() - Method in class org.kepler.profiling.gui.CurrentExecutionPanel
Initialize the pop up menu for the execution table.
_initContextMenu() - Method in class org.kepler.profiling.gui.ExecutionMonitorPanel
Initialize the pop up menu for the execution table.
_initExtendedGraphFrame() - Method in class ptolemy.vergil.basic.ExtendedGraphFrame
Initialize this class.
_initializables - Variable in class ptolemy.actor.AtomicActor
List of objects whose (pre)initialize() and wrapup() methods should be slaved to these.
_initializables - Variable in class ptolemy.actor.CompositeActor
List of objects whose (pre)initialize() and wrapup() methods should be slaved to these.
_initializables - Variable in class ptolemy.actor.Director
Set of objects whose (pre)initialize() and wrapup() methods should be slaved to these.
_initializables - Variable in class ptolemy.domains.modal.kernel.FSMActor
List of objects whose (pre)initialize() and wrapup() methods should be slaved to these.
_initialize() - Method in class org.kepler.spark.stub.KeplerPairFlatMapFunction
Configure the stub by loading the workflow and initialize the class fields.
_initialize() - Method in class org.kepler.spark.stub.ScriptEnginePairFlatMapFunction
Configure the stub by loading the workflow and initialize the class fields.
_initializeAnalyses() - Method in class ptolemy.graph.DirectedAcyclicGraph
Initialize the list of analyses that are associated with this graph, and initialize the change counter of the graph.
_initializeAnalyses() - Method in class ptolemy.graph.DirectedGraph
Initialize the list of analyses that are associated with this graph, and initialize the change counter of the graph.
_initializeAnalyses() - Method in class ptolemy.graph.Graph
Initialize the list of analyses that are associated with this graph, and initialize the change counter of the graph.
_initializeApplication() - Method in class ptolemy.actor.gui.ConfigurationApplication
Perform any application specific initialization.
_initializeApplication() - Method in class ptolemy.actor.gui.MoMLApplication
Set the look and feel to the native look and feel.
_initialized - Variable in class ptolemy.actor.lib.gui.Display
Indicator that the display window has been opened.
_initialized - Variable in class ptolemy.actor.lib.NonStrictTest
Set to true when initialized() is called.
_initialized - Variable in class ptolemy.actor.lib.PublisherNonStrictTest
Set to true when initialized() is called.
_initializeGraph(CompositeActor) - Method in class ptolemy.actor.GraphReader
Instantiate and initialize a graph just prior to filling it in from a given Ptolemy II model.
_initializeInteraction(NamedObjController) - Method in class ptolemy.vergil.actor.ActorEditorGraphController
Initialize interactions for the specified controller.
_initializeInteraction(NamedObjController) - Method in class ptolemy.vergil.basic.BasicGraphController
Initialize interactions for the specified controller.
_initializeInteraction(NamedObjController) - Method in class ptolemy.vergil.modal.FSMGraphController
Initialize interactions for the specified controller.
_initializeQuery() - Method in class ptolemy.vergil.basic.DependencyResultsDialog
Initialize the query dialog.
_initializeQuery() - Method in class ptolemy.vergil.basic.SearchResultsDialog
Initialize the query dialog.
_initializeRefinements(State) - Method in class ptolemy.domains.modal.kernel.FSMActor
Initialize the refinements of the specified state.
_initializeStorage() - Method in class ptolemy.data.OrderedRecordToken
Initialize the storage used by this token.
_initializeStorage() - Method in class ptolemy.data.RecordToken
Subclasses of RecordToken may choose a different Map implementation TreeMap is used in the base class to provide naturally-ordered labels This may not be desired in some applications.
_initializeTaps() - Method in class ptolemy.domains.sdf.lib.FIR
Initialize the taps.
_initialSaveAsFileName - Variable in class ptolemy.actor.gui.TableauFrame
The initial filename to use in the SaveAs dialog.
_initKeplerGraphFrame() - Method in class org.kepler.gui.KeplerGraphFrame
KeplerGraphFrame Initializer method
_initLayoutGuiAction() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Initialize the layout gui.
_initParameters() - Method in class ptolemy.domains.continuous.kernel.ContinuousDirector
Create and initialize all parameters to their default values.
_initReloadAccessorsAction() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Initialize the reload accessors menu choice.
_INPUT_TRANSITION - Static variable in class ptolemy.domains.modal.kernel.ia.InterfaceAutomatonTransition
The input transition type.
_inputBuffer - Variable in class ptolemy.domains.continuous.lib.ContinuousTimeDelay
A local event queue to store input tokens, sorted by input time.
_inputData - Variable in class org.kepler.spark.operator.Operator
The input data to this operator.
_inputTokenMap - Variable in class ptolemy.domains.modal.kernel.FSMActor
A map from ports to corresponding input variables.
_inRemoveEntity - Variable in class ptolemy.actor.lib.hoc.ReflectComposite
Flag indicating that we are executing _removeEntity().
_insideLinks - Variable in class ptolemy.kernel.Port
The list of inside relations for this port.
_instantiateAnalysisModel(Map) - Method in class ptolemy.domains.sdf.optimize.OptimalScheduleFinder
Instantiate the analysis model from the core model.
_instantiateAttributeAction - Variable in class ptolemy.vergil.actor.ActorGraphFrame
The action for instantiating an attribute.
_instantiateEntityAction - Variable in class ptolemy.vergil.actor.ActorGraphFrame
The action for instantiating an entity.
_instantiateODESolver(String) - Method in class ptolemy.domains.continuous.kernel.ContinuousDirector
Instantiate an ODESolver from its classname.
_instantiatePortAction - Variable in class ptolemy.vergil.actor.ActorGraphFrame
The action for instantiating a port.
_INTERNAL_TRANSITION - Static variable in class ptolemy.domains.modal.kernel.ia.InterfaceAutomatonTransition
The internal transition type.
_interpolationValue - Variable in class ptolemy.domains.sdf.lib.FIR
Interpolation value.
_intersection(Collection, Collection) - Method in class ptolemy.data.expr.ParseTreeFreeVariableRenamer
Return the intersection of two collections.
_invocable - Variable in class org.kepler.spark.stub.ScriptEnginePairFlatMapFunction
Interface to execute functions in scripts.
_invokeMethodWithReflection - Variable in class org.kepler.scriptengine.ScriptEngineActor
If true, use reflection to invoke the method.
_ioPort - Variable in class ptolemy.domains.de.kernel.DEEvent
The destination IO port.
_isAutoIncResultReferencedByName() - Method in class org.kepler.util.sql.DatabaseType
Returns true if an auto-incremented column value in a ResultSet must be referenced with the name instead of position.
_isAutoIncResultReferencedByName() - Method in class org.kepler.util.sql.PostgreSQL
Returns true if an auto-incremented column value in a ResultSet must be referenced with the name instead of position.
_isBitwiseNot - Variable in class ptolemy.data.expr.ASTPtUnaryNode
 
_isClose(Token, Token, double) - Static method in class ptolemy.actor.lib.NonStrictTest
Test whether the value of the first token is close to the the value of the second token.
_isClose(double, double, double) - Method in class ptolemy.data.SmoothToken
Return true if the two arguments are within epsilon of one another.
_isCloseTo(Token, double) - Method in class ptolemy.data.AbstractConvertibleToken
Test that the value of this token is close to the first argument, where "close" means that the distance between them is less than or equal to the second argument.
_isCloseTo(Token, double) - Method in class ptolemy.data.AbstractNotConvertibleToken
Test that the value of this Token is close to the first argument, where "close" means that the distance between them is less than or equal to the second argument.
_isCloseTo(Token, double) - Method in class ptolemy.data.ArrayToken
Test whether the value of this token is close to the first argument, where "close" means that the distance between them is less than or equal to the second argument.
_isCloseTo(ScalarToken, double) - Method in class ptolemy.data.BooleanToken
Return a true-valued token if the first argument is close to this token, where in this class, "close" means "identical to."
_isCloseTo(ScalarToken, double) - Method in class ptolemy.data.ComplexToken
Test that the value of this rightArgument is close to the first argument, where "close" means that the distance between their values is less than or equal to the second argument.
_isCloseTo(Token, double) - Method in class ptolemy.data.DateToken
The isCloseTo() method brings both tokens to the same precision.
_isCloseTo(ScalarToken, double) - Method in class ptolemy.data.DoubleToken
Test that the value of this token is close to the first argument, where "close" means that the distance between their values is less than or equal to the second argument.
_isCloseTo(ScalarToken, double) - Method in class ptolemy.data.expr.ConcreteScalarToken
Throw an exception.
_isCloseTo(ScalarToken, double) - Method in class ptolemy.data.FixToken
Test whether the value of this token is close to the first argument, where "close" means that the distance between their values is less than or equal to the second argument.
_isCloseTo(ScalarToken, double) - Method in class ptolemy.data.FloatToken
Test that the value of this token is close to the first argument, where "close" means that the distance between their values is less than or equal to the second argument.
_isCloseTo(ScalarToken, double) - Method in class ptolemy.data.IntToken
Test whether the value of this token is close to the first argument, where "close" means that the distance between their values is less than or equal to the second argument.
_isCloseTo(ScalarToken, double) - Method in class ptolemy.data.LongToken
Test whether the value of this token is close to the first argument, where "close" means that the distance between their values is less than or equal to the second argument.
_isCloseTo(MatrixToken, double) - Method in class ptolemy.data.MatrixToken
Test whether the value of this token is close to the first argument, where "close" means that the distance between their elements is less than or equal to the second argument.
_isCloseTo(Token, double) - Method in class ptolemy.data.ObjectToken
Test for closeness of the values of this Token and the argument Token.
_isCloseTo(Token, double) - Method in class ptolemy.data.OrderedRecordToken
Test whether the value of this token is close to the first argument, where "close" means that the distance between them is less than or equal to the second argument.
_isCloseTo(ScalarToken, double) - Method in class ptolemy.data.PetiteToken
Test that the value of this token is close to the first argument, where "close" means that the distance between their values is less than or equal to the second argument.
_isCloseTo(Token, double) - Method in class ptolemy.data.RecordToken
Test whether the value of this token is close to the first argument, where "close" means that the distance between them is less than or equal to the second argument.
_isCloseTo(ScalarToken, double) - Method in class ptolemy.data.ScalarToken
Test whether the value of this token is close to the first argument, where "close" means that the distance between them is less than or equal to the second argument.
_isCloseTo(ScalarToken, double) - Method in class ptolemy.data.ShortToken
Test whether the value of this token is close to the first argument, where "close" means that the distance between their values is less than or equal to the second argument.
_isCloseTo(ScalarToken, double) - Method in class ptolemy.data.SmoothToken
Test that the value of this token is close to the first argument, where "close" means that the distance between their values is less than or equal to the second argument.
_isCloseTo(Token, double) - Method in class ptolemy.data.StringToken
Test for closeness of the values of this Token and the argument Token.
_isCloseTo(Token, double) - Method in class ptolemy.data.UnionToken
Test whether the value of this token is close to the first argument, where "close" means that the distance between them is less than or equal to the second argument.
_isCloseTo(ScalarToken, double) - Method in class ptolemy.data.UnsignedByteToken
Test whether the value of this token is close to the first argument, where "close" means that the distance between them is less than or equal to the second argument.
_isCloseTo(Token, double) - Method in class ptolemy.data.XMLToken
Test for closeness of the values of this Token and the argument Token.
_isCloseToIfNilArrayElement(Token, Token, double) - Static method in class ptolemy.actor.lib.NonStrictTest
Test whether the value of this token is close to the first argument, where "close" means that the distance between them is less than or equal to the second argument.
_isCloseToIfNilRecordElement(Token, Token, double) - Static method in class ptolemy.actor.lib.NonStrictTest
Test whether the value of this token is close to the first argument, where "close" means that the distance between them is less than or equal to the second argument.
_isConnected(NamedObj) - Static method in class ptolemy.vergil.basic.layout.kieler.PtolemyModelUtil
Check whether the given Ptolemy model object has any connections, i.e. is connected to any other components via some link.
_isConstant - Variable in class ptolemy.data.expr.ASTPtRootNode
Flags whether the parse tree under this root evaluates to a constant.
_isDebugging - Static variable in class org.kepler.util.StaticResources
Set to true and recompile for debugging such as error messages.
_isDebugging() - Method in class ptolemy.domains.continuous.kernel.ContinuousDirector
Return true if debugging is turned on.
_isDebugging() - Method in class ptolemy.domains.continuous.kernel.ContinuousODESolver
Return true if debugging is turned on in the director.
_isDeferrable(Actor) - Method in class ptolemy.domains.ddf.kernel.DDFDirector
Check each remote receiver to see whether the number of tokens in the receiver is greater than or equal to the tokenConsumptionRate of the containing port.
_isDesignPattern() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Return true if this is a design pattern.
_isDirty() - Method in class ptolemy.actor.gui.PtolemyDialog
Return true if any of the values have been changed, but the state has not yet been saved.
_isEditable - Variable in class ptolemy.actor.gui.style.ChoiceStyle
Whether or not the combobox is editable.
_isEmbedded() - Method in class ptolemy.actor.Director
Deprecated.
_isEnabled(Actor) - Method in class ptolemy.domains.ddf.kernel.DDFDirector
Check to see whether the actor is enabled.
_isEqualTo(Token) - Method in class ptolemy.data.AbstractConvertibleToken
Test for equality of the values of this token and the argument.
_isEqualTo(Token) - Method in class ptolemy.data.AbstractNotConvertibleToken
Test for equality of the values of this token and the argument.
_isEqualTo(Token) - Method in class ptolemy.data.ArrayToken
Return a true-valued token if the argument is equal to this one.
_isEqualTo(ScalarToken) - Method in class ptolemy.data.BooleanToken
Test for equality of the values of this token and the argument.
_isEqualTo(Token) - Method in class ptolemy.data.DateToken
Return true of the the value of this token is equal to the value of the argument according to java.util.Date.
_isEqualTo(MatrixToken) - Method in class ptolemy.data.MatrixToken
Test for equality of the values of this Token and the argument Token.
_isEqualTo(Token) - Method in class ptolemy.data.ObjectToken
Test for equality of the values of this Token and the argument Token.
_isEqualTo(Token) - Method in class ptolemy.data.OrderedRecordToken
Return true if the specified token is equal to this one.
_isEqualTo(Token) - Method in class ptolemy.data.RecordToken
Return true if the specified token is equal to this one.
_isEqualTo(ScalarToken) - Method in class ptolemy.data.ScalarToken
Test for equality of the values of this token and the argument.
_isEqualTo(Token) - Method in class ptolemy.data.StringToken
Test for equality of the values of this Token and the argument Token.
_isEqualTo(Token) - Method in class ptolemy.data.UnionToken
Return true if the specified token is equal to this one.
_isEqualTo(Token) - Method in class ptolemy.data.XMLToken
Test for equality of the values of this Token and the argument Token.
_isFinalState(State) - Static method in class ptolemy.vergil.basic.layout.kieler.PtolemyModelUtil
Return true if the state is a final state.
_isIdentifierTooLong(String) - Method in class org.kepler.util.sql.DatabaseType
Returns true if identifier is too long.
_isIdentifierTooLong(String) - Method in class org.kepler.util.sql.Oracle
Returns true if identifier is too long.
_isInitializing - Variable in class ptolemy.domains.continuous.kernel.ContinuousDirector
A local boolean variable indicating whether this director is in initialization phase execution.
_isInitializing - Variable in class ptolemy.domains.de.kernel.DEDirector
A local boolean variable indicating whether this director is in initialization phase execution.
_isInitialState(State) - Static method in class ptolemy.vergil.basic.layout.kieler.PtolemyModelUtil
Return true if the state is an initial state.
_isInput(Port) - Static method in class ptolemy.vergil.basic.layout.kieler.PtolemyModelUtil
Determine whether a given Port is an input port.
_isInputControllerBlocked() - Method in class ptolemy.actor.process.CompositeProcessDirector
Return true if the input controller of this director is blocked; return false otherwise.
_isInsideLinkable(Nameable) - Method in class ptolemy.kernel.ComponentPort
Return true if this port is either a port of the specified entity, or a port of an entity that (deeply) contains the specified entity.
_isIntermediateStep() - Method in class ptolemy.domains.continuous.kernel.ContinuousDirector
Return true if the solver is at the first or intermediate steps of a multi-step solver.
_isLessThan(ScalarToken) - Method in class ptolemy.data.BooleanToken
Throw an exception.
_isLessThan(ScalarToken) - Method in class ptolemy.data.ComplexToken
Throw an exception because complex values cannot be compared.
_isLessThan(DateToken) - Method in class ptolemy.data.DateToken
Test for ordering of the values of this Token and the argument Token.
_isLessThan(ScalarToken) - Method in class ptolemy.data.DoubleToken
Test for ordering of the values of this Token and the argument Token.
_isLessThan(ScalarToken) - Method in class ptolemy.data.expr.ConcreteScalarToken
Throw an exception.
_isLessThan(ScalarToken) - Method in class ptolemy.data.FixToken
Test for ordering of the values of this Token and the argument Token.
_isLessThan(ScalarToken) - Method in class ptolemy.data.FloatToken
Test for ordering of the values of this Token and the argument Token.
_isLessThan(ScalarToken) - Method in class ptolemy.data.IntToken
Test for ordering of the values of this Token and the argument Token.
_isLessThan(ScalarToken) - Method in class ptolemy.data.LongToken
Test for ordering of the values of this Token and the argument Token.
_isLessThan(ScalarToken) - Method in class ptolemy.data.PetiteToken
Test for ordering of the values of this Token and the argument Token.
_isLessThan(ScalarToken) - Method in class ptolemy.data.ScalarToken
Test for ordering of the values of this Token and the argument Token.
_isLessThan(ScalarToken) - Method in class ptolemy.data.ShortToken
Test for ordering of the values of this Token and the argument Token.
_isLessThan(ScalarToken) - Method in class ptolemy.data.SmoothToken
Test for ordering of the values of this Token and the argument Token.
_isLessThan(ScalarToken) - Method in class ptolemy.data.UnsignedByteToken
Test for ordering of the values of this Token and the argument Token.
_isMinus - Variable in class ptolemy.data.expr.ASTPtUnaryNode
 
_isMoMLSuppressed(int) - Method in class ptolemy.actor.lib.gui.PlotterBase
Override the base class to ensure that MoML is produced if there is configuration information to export.
_isMoMLSuppressed(int) - Method in class ptolemy.kernel.util.NamedObj
Return true if describing this class in MoML is redundant.
_isNot - Variable in class ptolemy.data.expr.ASTPtUnaryNode
 
_isOutputControllerBlocked() - Method in class ptolemy.actor.process.CompositeProcessDirector
Return true if the output controller of this director is blocked; return false otherwise.
_isPersistent - Variable in class ptolemy.kernel.util.NamedObj
Boolean variable to indicate the persistence of the object.
_isPropertySet(NamedObj, String) - Method in class ptolemy.vergil.basic.LocatableNodeController
Return true if the property of the specified name is set for the specified object.
_isPropertySet(NamedObj, String) - Method in class ptolemy.vergil.icon.EditorIcon
Return true if the property of the specified name is set for the specified object.
_isReadyToFire(Actor) - Method in class ptolemy.actor.sched.FixedPointDirector
Return true if the specified actor is ready to fire.
_isRefinementOutput(IOPort, int) - Method in class ptolemy.domains.modal.kernel.FSMActor
Return true if the channel of the port is connected to an output port of the refinement of current state.
_isSafeToClear(IOPort, int, State, boolean, HashSet<State>) - Method in class ptolemy.domains.modal.kernel.FSMActor
Given an output port and channel, determine whether the output port must be absent on the specified channel, given whatever current information about the inputs is available (the inputs may be known or unknown).
_isStepFinished() - Method in class ptolemy.domains.continuous.kernel.ContinuousODESolver
Return true if the current integration step is finished.
_isStepFinished() - Method in class ptolemy.domains.continuous.kernel.solver.ExplicitRK23Solver
Return true if the current integration step is finished.
_isStepFinished() - Method in class ptolemy.domains.continuous.kernel.solver.ExplicitRK45Solver
Return true if the current integration step is finished.
_issueExecutionAspectWarning() - Method in class ptolemy.domains.de.kernel.DEDirector
In DE, a warning is issued when execution aspects are used because these might change the DE semantics of the execution.
_isSuppressBlankLines - Variable in class ptolemy.actor.lib.gui.Display
The flag indicating whether the blank lines will be suppressed.
_isTableCached() - Method in class org.kepler.util.sql.DatabaseType
Returns true if table is cached.
_isTableCached() - Method in class org.kepler.util.sql.HSQL
Returns true if table is cached.
_isTime() - Method in class ptolemy.actor.lib.TimeDelay
Return true if it is time to produce an output.
_isTimeForOutput() - Method in class ptolemy.actor.lib.Clock
Deprecated.
Return true if the current time is the right time for an output.
_isTopLevel() - Method in class ptolemy.actor.Director
Return true if this is a top-level director, or if it should always be handled as if it were a top-level director.
_isUnitless() - Method in class ptolemy.data.ScalarToken
Return true if this token does not have a unit.
_isValidName(String) - Method in class ptolemy.data.expr.CParseTreeCodeGenerator
Return true if the name is a valid name.
_isValidName(String) - Method in class ptolemy.data.expr.ParseTreeFreeVariableCollector
Return true if the given identifier is valid.
_isValidName(String) - Method in class ptolemy.data.expr.ParseTreeTypeInference
Test if the given identifier is valid.
_isVisible(NamedObj) - Method in class ptolemy.vergil.tree.VisibleTreeModel
Return true if the object contains either an attribute of class EditorIcon or an attribute of any class named "_iconDescription" or "_smallIconDescription".
_iterateActor() - Method in class ptolemy.actor.process.ProcessThread
Iterate the actor associate with this thread.
_iteration - Variable in class ptolemy.actor.lib.NonStrictTest
Count of iterations.
_iteration - Variable in class ptolemy.actor.lib.PublisherNonStrictTest
Count of iterations.
_iterationBeginTime - Variable in class ptolemy.domains.continuous.kernel.ContinuousDirector
The current time at the start of the current integration step.
_iterationCount - Variable in class ptolemy.actor.lib.LimitedFiringSource
The current number of elapsed iterations.
_iterationCount - Variable in class ptolemy.domains.sdf.kernel.SDFDirector
The iteration count.
_jgraph - Variable in class ptolemy.vergil.basic.BasicGraphFrame
The instance of JGraph for this editor.
_jobArgumentsMap - Variable in class org.kepler.ddp.director.DDPEngine
A collection of job arguments as key-values.
_jobDir - Variable in class org.kepler.ddp.director.DDPEngine
Directory for the current job.
_jobLock - Variable in class org.kepler.ddp.director.DDPEngine
A lock for DDP jobs.
_jsAccessorClass - Static variable in class ptolemy.util.test.junit.AutoTests
The org.terraswarm.accessor.JSAccessor class, which is tested by reloading Accessors.
_jsAccessorReloadAllAccessorsMethod - Static variable in class ptolemy.util.test.junit.AutoTests
The method that reloads all the accessors in a CompositeEntity.
_jsCopier - Variable in class ptolemy.vergil.basic.ExportParameters
Directory into which JavaScript and related files have been written, or null if they are not being copied.
_karType - Variable in class org.kepler.gui.kar.ExportArchiveAction
A string that represents to the user the type of KAR that is being exported.
_keplerManagerException - Variable in class org.kepler.hadoop.execution.KeplerAppBase
If the workflow is running in a separate thread (_runWorkflowLifecyclePerInput = false) and an exception is thrown, this field is set to that exception.
_keplerManagerException - Variable in class org.kepler.spark.stub.KeplerPairFlatMapFunction
If the workflow is running in a separate thread (_runWorkflowLifecyclePerInput = false) and an exception is thrown, this field is set to that exception.
_keyList - Variable in class org.kepler.ddp.actor.pattern.stub.StubSourceActor
A list containing tokens to be written by the key port.
_keyType - Variable in class org.kepler.ddp.actor.pattern.AtomicPatternActor
The key type.
_known - Variable in class ptolemy.actor.sched.FixedPointReceiver
A flag indicating whether this receiver has status known.
_labelFont - Static variable in class ptolemy.vergil.actor.ExternalIOPortController
The font used to label a port.
_labelFont - Static variable in class ptolemy.vergil.icon.AttributeValueIcon
The font used.
_labelFont - Static variable in class ptolemy.vergil.icon.BoxedValuesIcon
The font used.
_labelFont - Static variable in class ptolemy.vergil.icon.NameIcon
The font used.
_labelFont - Static variable in class ptolemy.vergil.icon.TableIcon
The font used.
_labelNames - Variable in class ptolemy.data.expr.ASTPtUnionConstructNode
The list of field names for the record.
_lastChosenTransition - Variable in class ptolemy.domains.modal.kernel.FSMActor
The most recently chosen transition within the fire() method.
_lastChosenTransitions - Variable in class ptolemy.domains.modal.kernel.FSMActor
The last chosen transitions, by state from which these transitions emerge.
_lastInputs - Variable in class ptolemy.domains.de.lib.MostRecent
The recorded inputs last seen.
_lastInputs - Variable in class ptolemy.domains.de.lib.Wire
Deprecated.
The recorded inputs last seen.
_lastTakenTransitions - Variable in class ptolemy.domains.modal.kernel.FSMActor
The last taken transitions, by state from which these transitions emerge.
_lastUpdate - Variable in class org.kepler.monitor.figure.BaseFigure
The last time BaseFigure.update() was called.
_layoutAction - Variable in class ptolemy.vergil.basic.BasicGraphFrame
The action for automatically laying out the graph.
_layoutConfigDialogAction - Variable in class ptolemy.vergil.basic.BasicGraphFrame
The action for opening the layout configuration dialog.
_layoutModelCompareAgainstFile(NamedObj, String) - Method in class ptolemy.vergil.basic.layout.kieler.test.junit.KielerJUnitTest
Lay out the model and compare the results against the original model file name.
_layoutTest(String, boolean) - Method in class ptolemy.vergil.basic.layout.kieler.test.junit.KielerJUnitTest
Test the layout facility by reading in a model, laying out the model, comparing the new results with the known good results and then doing undo and redo.
_leastUpperBound(StructuredType) - Method in class ptolemy.data.type.ArrayType
Return the least Upper bound of this type with the specified type.
_leastUpperBound(StructuredType) - Method in class ptolemy.data.type.FixType
Return the least upper bound of this type with the specified type.
_leastUpperBound(StructuredType) - Method in class ptolemy.data.type.FunctionType
Return the least upper bound of this type with the specified type.
_leastUpperBound(StructuredType) - Method in class ptolemy.data.type.MatrixType
Return the least upper bound of this type with the specified type.
_leastUpperBound(StructuredType) - Method in class ptolemy.data.type.ObjectType
Return the least upper bound of this type with the specified type.
_leastUpperBound(StructuredType) - Method in class ptolemy.data.type.RecordType
Return the least Upper bound of this type with the specified type.
_leastUpperBound(StructuredType) - Method in class ptolemy.data.type.StructuredType
Return the least upper bound of this type with the specified type.
_leastUpperBound(StructuredType) - Method in class ptolemy.data.type.TupleType
Return the least upper bound of this type with the specified type.
_leastUpperBound(StructuredType) - Method in class ptolemy.data.type.UnionType
Return the least Upper bound of this type with the specified type.
_leftKeyPressed - Variable in class ptolemy.actor.lib.gui.ArrowKeySensor
A flag indicating if the left arrow key has been released since the last firing of the actor.
_leftKeyReleased - Variable in class ptolemy.actor.lib.gui.ArrowKeySensor
A flag indicating if the left arrow key has been released since the last firing of the actor.
_leftPadding - Variable in class ptolemy.plot.PlotBox
Left padding.
_level - Variable in class ptolemy.domains.continuous.lib.LevelCrossingDetector
The level threshold this actor detects.
_levelCrossingLinks - Variable in class ptolemy.kernel.CompositeEntity
Level-crossing links within this composite for which this composite is responsible.
_lexicalToken - Variable in class ptolemy.data.expr.ASTPtBitwiseNode
 
_lexicalToken - Variable in class ptolemy.data.expr.ASTPtLogicalNode
 
_lexicalToken - Variable in class ptolemy.data.expr.ASTPtRelationalNode
 
_lexicalToken - Variable in class ptolemy.data.expr.ASTPtShiftNode
 
_lexicalToken - Variable in class ptolemy.data.expr.ASTPtUnaryNode
 
_lexicalTokens - Variable in class ptolemy.data.expr.ASTPtProductNode
 
_lexicalTokens - Variable in class ptolemy.data.expr.ASTPtSumNode
 
_library - Variable in class org.kepler.gui.ComponentLibraryTab
 
_library - Variable in class org.kepler.gui.LibrarySearcher
the library to search
_library - Variable in class ptolemy.vergil.basic.BasicGraphFrame
The library display widget.
_libraryContextMenuCreator - Variable in class ptolemy.vergil.basic.BasicGraphFrame
The library context menu creator.
_libraryModel - Variable in class org.kepler.gui.ComponentLibraryTab
 
_libraryModel - Variable in class ptolemy.vergil.basic.BasicGraphFrame
The library model.
_libraryPanel - Variable in class org.kepler.gui.ComponentLibraryTab
 
_libraryScrollPane - Variable in class ptolemy.vergil.basic.BasicGraphFrame
The library scroll pane.
_librarySearcher - Variable in class org.kepler.gui.ComponentLibraryTab
 
_linkController - Variable in class ptolemy.vergil.actor.ActorViewerGraphController
The link controller.
_linkList - Variable in class ptolemy.kernel.Relation
The list of Ports and Relations that are linked to this Relation.
_listeners - Variable in class ptolemy.gui.Query
List of registered listeners.
_listenToAction - Variable in class ptolemy.vergil.kernel.AttributeController
Action to listen to debug messages.
_ListOfActors() - Constructor for class ptolemy.domains.sdf.optimize.OptimalScheduleFinder._ListOfActors
 
_ListOfChannels() - Constructor for class ptolemy.domains.sdf.optimize.OptimalScheduleFinder._ListOfChannels
 
_ListOfPorts() - Constructor for class ptolemy.domains.sdf.optimize.OptimalScheduleFinder._ListOfPorts
 
_liveFigureIterator() - Method in class ptolemy.vergil.icon.DynamicEditorIcon
Return a regular iterator over the figures created by this icon which have not been garbage collected.
_liveSoundListeners - Variable in class ptolemy.media.javasound.LiveSoundCommon
The list of listeners.
_localCommandFlags - Static variable in class ptolemy.actor.gui.PtExecuteApplication
The command-line options that are either present or not.
_localCommandOptions - Static variable in class ptolemy.actor.gui.PtExecuteApplication
The command-line options that take arguments.
_localReceiverMaps - Variable in class ptolemy.domains.modal.kernel.FSMDirector
Record for each state of the mode controller the map from input ports of the modal model to the local receivers when the mode controller is in that state.
_localRepositoryManager - Variable in class org.kepler.gui.kar.ExportArchiveAction
Convenience reference to the LocalRepositoryManager.
_log(String) - Method in class org.geon.LidarWorkflowExecute
 
_LOG10SCALE - Static variable in class ptolemy.plot.PlotBox
For use in calculating log base 10.
_logExecution(String, String) - Method in class org.geon.ExecutionThread
 
_lookInsideAction - Variable in class ptolemy.chic.ChicController
The action that handles look inside.
_lookInsideAction - Variable in class ptolemy.vergil.actor.ActorController
The action that handles opening an actor.
_lookInsideAction - Variable in class ptolemy.vergil.modal.modal.HierarchicalStateController
The action that handles look inside.
_lookInsideAction - Variable in class ptolemy.vergil.modal.TransitionController
The action that handles look inside.
_lookInsideActionFactory - Variable in class ptolemy.vergil.modal.TransitionController
The menu factory for _lookInsideAction. null if the factory has not been added to the context menu.
_lrx - Variable in class ptolemy.plot.PlotBox
The x value of the lower right corner of the plot rectangle in pixels.
_lry - Variable in class ptolemy.plot.PlotBox
The y value of the lower right corner of the plot rectangle in pixels.
_lsid - Variable in class org.kepler.objectmanager.cache.CacheObject
 
_machineStr - Variable in class org.kepler.provenance.Recording
The machine name
_makeManagerOf(CompositeActor) - Method in class ptolemy.actor.Manager
Make this manager the manager of the specified composite actor.
_makeSolverOf(ContinuousDirector) - Method in class ptolemy.domains.continuous.kernel.ContinuousODESolver
Make this solver the solver of the given Director.
_manager - Variable in class org.kepler.hadoop.execution.KeplerAppBase
Manager to execute the workflow.
_manager - Variable in class org.kepler.scriptengine.ScriptEngineActor
An object to load script engines.
_manager - Variable in class org.kepler.spark.stub.KeplerPairFlatMapFunction
Manager to execute the workflow.
_manager - Variable in class ptolemy.actor.gui.PtolemyApplet
The manager, created in the init() method.
_manager - Variable in class ptolemy.actor.process.ProcessThread
The Manager of the actor.
_manager - Variable in class ptolemy.moml.MoMLSimpleApplication
The manager of this model.
_manualUrl - Variable in class org.kepler.sms.NamedOntClass
 
_map - Variable in class org.kepler.provenance.ProvenanceEvent
 
_map - Variable in class ptolemy.graph.mapping.MapMapping
The Map on which this Mapping is based.
_mapKARToCurrentFrame - Variable in class org.kepler.gui.kar.ExportArchiveAction
 
_mapPorts() - Method in class ptolemy.actor.lib.RecordAssembler
Map port names or aliases to port objects.
_markContentsDerived(int) - Method in class ptolemy.kernel.util.NamedObj
Mark the contents of this object as being derived objects.
_marks - Variable in class ptolemy.plot.Plot
An indicator of the marks style.
_matchedValues - Variable in class ptolemy.actor.lib.NonStrictTest
An array of booleans where if an element is true, then the corresponding element in correctValues has been seen.
_maxDataSize - Variable in class org.kepler.provenance.sql.SQLRecording
The maximum size in the SQL table for data values.
_maxEndTime - Static variable in class org.kepler.provenance.sql.SQLQueryV8
The most futuristic Timestamp possible!
_maxParameterValueSize - Variable in class org.kepler.provenance.sql.SQLRecording
The maximum size in the SQL table for parameter values.
_maxPastInputsToAverage - Variable in class ptolemy.actor.lib.MovingAverage
Maximum number of past inputs to average.
_maxSample - Variable in class ptolemy.media.javasound.LiveSoundCommon
Cached value of the maximum integer value, default for 16 bits.
_maxSampleReciprocal - Variable in class ptolemy.media.javasound.LiveSoundCommon
Cached value of the maximum value scaling factor, default for 16 bits.
_menubar - Variable in class ptolemy.gui.Top
Menubar for this frame.
_menubar - Variable in class ptolemy.plot.PlotFrame
Menubar for this frame.
_menuBaseName - Variable in class org.kepler.gui.KeplerContextMenuFactory
 
_menuCreator - Variable in class ptolemy.vergil.actor.LinkController
The menu creator.
_menuCreator - Variable in class ptolemy.vergil.basic.BasicGraphController
The interactor for creating context sensitive menus on the graph itself.
_menuCreator - Variable in class ptolemy.vergil.basic.ParameterizedNodeController
The menu creator.
_menuCreator - Variable in class ptolemy.vergil.modal.TransitionController
The menu creator.
_menuFactory - Variable in class ptolemy.vergil.actor.LinkController
The factory belonging to the menu creator.
_menuFactory - Variable in class ptolemy.vergil.basic.BasicGraphController
The factory belonging to the menu creator.
_menuFactory - Variable in class ptolemy.vergil.basic.ParameterizedNodeController
The factory belonging to the menu creator.
_menuFactory - Variable in class ptolemy.vergil.modal.TransitionController
The factory belonging to the menu creator.
_message(String) - Method in class ptolemy.gui.GraphicalMessageHandler
Show the specified message in a modal dialog.
_message(String) - Method in class ptolemy.gui.UndeferredGraphicalMessageHandler
Show the specified message in a modal dialog.
_message(String) - Method in class ptolemy.util.MessageHandler
Display the warning message.
_message(String) - Method in class ptolemy.util.SimpleMessageHandler
Display the warning message.
_methodCall(String, Type[], Object[]) - Method in class ptolemy.data.expr.ParseTreeEvaluator
Evaluate the specified method.
_methodCall(String, Type[]) - Method in class ptolemy.data.expr.ParseTreeTypeInference
Infer the type of the specified method.
_methodName - Variable in class ptolemy.data.expr.ASTPtMethodCallNode
Need to store the method name of the method call.
_microstep - Variable in class ptolemy.domains.de.kernel.DEDirector
The current microstep.
_microstep - Variable in class ptolemy.domains.de.kernel.DEEvent
The microstep of this event.
_minimumDelay - Variable in class ptolemy.actor.lib.TimeDelay
The amount of minimumDelay.
_minStartTime - Static variable in class org.kepler.provenance.sql.SQLQueryV8
The earliest Timestamp possible.
_mirrorDisable - Variable in class ptolemy.actor.lib.hoc.Refinement
Indicator that we are processing a newPort request.
_mirrorDisable - Variable in class ptolemy.actor.lib.hoc.RefinementPort
If false, then changes the port are mirrored in the container's container.
_mirrorDisable - Variable in class ptolemy.domains.modal.modal.ModalController
Indicator that we are processing a newPort request.
_mirrorDisable - Variable in class ptolemy.domains.modal.modal.ModalRefinement
Indicator that we are processing a newPort request from above (if 1) or below (if -1) in the hierarchy.
_mirrorDisable - Variable in class ptolemy.domains.modal.modal.Refinement
Indicator that we are processing a newPort request.
_mirrorDisable - Variable in class ptolemy.domains.modal.modal.RefinementPort
If false, then changes the port are mirrored in the container's container.
_mirrorParameterPorts - Variable in class ptolemy.actor.lib.hoc.ReflectComposite
Flag indicating whether to mirror instances of ParameterPort.
_mirrorPort(ComponentPort) - Method in class ptolemy.actor.lib.hoc.MirrorComposite
Return true if the specified inside port should be mirrored.
_mirrorPort(ComponentPort) - Method in class ptolemy.actor.lib.hoc.ReflectComposite
Return true if the specified inside port should be mirrored.
_modalTransitionController - Variable in class ptolemy.vergil.modal.FSMViewerGraphController
The modal transition controller.
_model - Variable in class org.kepler.hadoop.execution.KeplerAppBase
The workflow to execute.
_model - Variable in class org.kepler.sms.NamedOntClass
 
_model - Variable in class org.kepler.spark.actor.SaveableModelActor
The model to save.
_model - Variable in class org.kepler.workflow.Workflow
 
_model - Variable in class ptolemy.actor.gui.run.CustomizableRunFrame
The associated model.
_model - Variable in class ptolemy.actor.gui.run.CustomizableRunPane
The associated model.
_model - Variable in class ptolemy.actor.gui.run.RunLayoutFrame
The associated model.
_model - Variable in class ptolemy.actor.lib.hoc.ApplyFilterOverArray
The model.
_model - Variable in class ptolemy.actor.lib.hoc.ModelReference
The model.
_model - Variable in class ptolemy.moml.MoMLModelAttribute
The contained model.
_models - Static variable in class org.kepler.webview.server.WebViewServer
 
_models - Variable in class ptolemy.actor.gui.CompositeActorSimpleApplication
The list of all the models.
_modelURL - Variable in class ptolemy.actor.gui.MoMLApplet
The modelURL.
_modulo(Token) - Method in class ptolemy.data.AbstractConvertibleToken
Return a new token whose value is the value of this token modulo the value of the argument token.
_modulo(Token) - Method in class ptolemy.data.AbstractNotConvertibleToken
Return a new token whose value is the value of this token modulo the value of the argument token.
_modulo(Token) - Method in class ptolemy.data.ArrayToken
Return a new token whose value is the value of this token modulo the value of the argument token.
_modulo(ScalarToken) - Method in class ptolemy.data.BooleanToken
Throw an exception.
_modulo(ScalarToken) - Method in class ptolemy.data.ComplexToken
Throw an exception because the modulo operation does not make sense for complex values.
_modulo(Token) - Method in class ptolemy.data.DateToken
Modulo is not supported for Dates.
_modulo(ScalarToken) - Method in class ptolemy.data.DoubleToken
Return a new token whose value is the value of this token modulo the value of the argument token.
_modulo(ScalarToken) - Method in class ptolemy.data.expr.ConcreteScalarToken
Throw an exception.
_modulo(ScalarToken) - Method in class ptolemy.data.FixToken
Return a new token whose value is the value of this token modulo the value of the argument token.
_modulo(ScalarToken) - Method in class ptolemy.data.FloatToken
Return a new token whose value is the value of this token modulo the value of the argument token.
_modulo(ScalarToken) - Method in class ptolemy.data.IntToken
Return a new token whose value is the value of this token modulo the value of the argument token.
_modulo(ScalarToken) - Method in class ptolemy.data.LongToken
Return a new token whose value is the value of this token modulo the value of the argument token.
_modulo(ScalarToken) - Method in class ptolemy.data.PetiteToken
Return a new token whose value is the value of this token modulo the value of the argument token.
_modulo(Token) - Method in class ptolemy.data.RecordToken
Return a new token whose value is the field-wise modulo of this token and the argument.
_modulo(ScalarToken) - Method in class ptolemy.data.ScalarToken
Return a new token whose value is the value of this token modulo the value of the argument token.
_modulo(ScalarToken) - Method in class ptolemy.data.ShortToken
Return a new token whose value is the value of this token modulo the value of the argument token.
_modulo(Token) - Method in class ptolemy.data.StringToken
Return a new token whose value is the value of this token modulo the value of the argument token.
_modulo(Token) - Method in class ptolemy.data.UnionToken
Return a new token whose value is the modulo of this token and the argument.
_modulo(ScalarToken) - Method in class ptolemy.data.UnsignedByteToken
Return a new token whose value is the value of this token modulo the value of the argument token.
_moduloElement(Token) - Method in class ptolemy.data.DoubleMatrixToken
Return a new token whose elements are the remainders of the elements of this token when divided by the argument.
_moduloElement(Token) - Method in class ptolemy.data.IntMatrixToken
Return a new token whose elements are the remainders of the elements of this token when divided by the argument.
_moduloElement(Token) - Method in class ptolemy.data.LongMatrixToken
Return a new token whose elements are the remainders of the elements of this token when divided by the argument.
_moduloElement(Token) - Method in class ptolemy.data.MatrixToken
Return a new token whose elements are the modulo of the elements of this token by the argument.
_moduloReverse(Token) - Method in class ptolemy.data.ArrayToken
Return a new token whose value is the value of this token modulo the value of the argument token.
_momlSource - Variable in class ptolemy.actor.gui.properties.GUIAction
The input source that was specified the last time the configure method was called.
_momlText - Variable in class ptolemy.actor.gui.properties.GUIAction
The text string that represents the current configuration of this object.
_mostRecent - Variable in class ptolemy.actor.lib.MovingAverage
The index into the delay line of the most recent input.
_mostRecent - Variable in class ptolemy.domains.sdf.lib.FIR
The index into the delay line of the most recent input.
_moveDown() - Method in class ptolemy.domains.modal.modal.ModalBasePort
Move this object down by one in the list of attributes of its container.
_moveToBackAction - Variable in class ptolemy.vergil.basic.BasicGraphFrame
Action to move to the back.
_moveToFirst() - Method in class ptolemy.domains.modal.modal.ModalBasePort
Move this object to the first position in the list of attributes of the container.
_moveToFirstDescription() - Method in class ptolemy.vergil.actor.IOPortController
The text used in the MoveAction.TO_FIRST action menu choice.
_moveToFirstDescription() - Method in class ptolemy.vergil.kernel.AttributeController
The text used in the MoveAction.TO_FIRST action menu choice.
_moveToFrontAction - Variable in class ptolemy.vergil.basic.BasicGraphFrame
Action to move to the front.
_moveToIndex(int) - Method in class ptolemy.domains.modal.modal.ModalBasePort
Move this object to the specified position in the list of attributes of the container.
_moveToLast() - Method in class ptolemy.domains.modal.modal.ModalBasePort
Move this object to the last position in the list of attributes of the container.
_moveToLastDescription() - Method in class ptolemy.vergil.actor.IOPortController
The text used in the MoveAction.TO_LAST action menu choice.
_moveToLastDescription() - Method in class ptolemy.vergil.kernel.AttributeController
The text used in the MoveAction.TO_LAST action menu choice.
_moveUp() - Method in class ptolemy.domains.modal.modal.ModalBasePort
Move this object up by one in the list of attributes of the container.
_msgText - Variable in class org.kepler.objectmanager.data.DataSrcProgressFrame
 
_multiCompositeSelected(boolean) - Method in class org.kepler.gui.frame.CaseGraphTableau
This method is called when the Case actor is selected or unselected in the frame.
_multiCompositeSelected(boolean) - Method in class org.kepler.gui.frame.MultiCompositeTableau
This method is called whenever the tab containing the MultiCompositeActor is selected or unselected in the frame.
_multiply(Token) - Method in class ptolemy.data.AbstractConvertibleToken
Return a new token whose value is the value of this token multiplied by the value of the argument token.
_multiply(Token) - Method in class ptolemy.data.AbstractNotConvertibleToken
Return a new token whose value is the value of this token multiplied by the value of the argument token.
_multiply(Token) - Method in class ptolemy.data.ArrayToken
Return a new token whose value is the value of this token multiplied by the value of the argument token.
_multiply(ScalarToken) - Method in class ptolemy.data.BooleanToken
Return a new token whose value is the value of this token multiplied by the value of the argument token.
_multiply(MatrixToken) - Method in class ptolemy.data.ComplexMatrixToken
Return a new token whose value is the value of the argument Token multiplied to the value of this Token.
_multiply(ScalarToken) - Method in class ptolemy.data.ComplexToken
Return a new token whose value is the value of this token multiplied by the value of the argument token.
_multiply(Token) - Method in class ptolemy.data.DateToken
Multiply is not supported for Dates.
_multiply(MatrixToken) - Method in class ptolemy.data.DoubleMatrixToken
Return a new token whose value is the value of this token multiplied by the value of the argument token.
_multiply(ScalarToken) - Method in class ptolemy.data.DoubleToken
Return a new token whose value is the value of this token multiplied by the value of the argument token.
_multiply(ScalarToken) - Method in class ptolemy.data.expr.ConcreteScalarToken
Throw an exception.
_multiply(MatrixToken) - Method in class ptolemy.data.FixMatrixToken
Return a new token whose value is the value of this token multiplied by the value of the argument token.
_multiply(ScalarToken) - Method in class ptolemy.data.FixToken
Return a new token whose value is the value of this token multiplied by the value of the argument token.
_multiply(ScalarToken) - Method in class ptolemy.data.FloatToken
Return a new token whose value is the value of this token multiplied by the value of the argument token.
_multiply(MatrixToken) - Method in class ptolemy.data.IntMatrixToken
Return a new token whose value is the value of this token multiplied by the value of the argument token.
_multiply(ScalarToken) - Method in class ptolemy.data.IntToken
Return a new token whose value is the value of this token multiplied by the value of the argument token.
_multiply(MatrixToken) - Method in class ptolemy.data.LongMatrixToken
Return a new token whose value is the value of this token multiplied by the value of the argument token.
_multiply(ScalarToken) - Method in class ptolemy.data.LongToken
Return a new token whose value is the value of this token multiplied by the value of the argument token.
_multiply(MatrixToken) - Method in class ptolemy.data.MatrixToken
Return a new token whose value is the value of this token multiplied by the value of the argument token.
_multiply(ScalarToken) - Method in class ptolemy.data.PetiteToken
Return a new token whose value is the value of this token multiplied by the value of the argument token.
_multiply(Token) - Method in class ptolemy.data.RecordToken
Return a new token whose value is the field-wise multiplication of this token and the argument.
_multiply(ScalarToken) - Method in class ptolemy.data.ScalarToken
Return a new token whose value is the value of this token multiplied by the value of the argument token.
_multiply(ScalarToken) - Method in class ptolemy.data.ShortToken
Return a new token whose value is the value of this token multiplied by the value of the argument token.
_multiply(ScalarToken) - Method in class ptolemy.data.SmoothToken
Return a new token whose value is the value of this token multiplied by the value of the argument token.
_multiply(Token) - Method in class ptolemy.data.StringToken
Return a new token whose value is the value of this token multiplied by the value of the argument token.
_multiply(Token) - Method in class ptolemy.data.UnionToken
Return a new token whose value is the multiplication of this token and the argument.
_multiply(ScalarToken) - Method in class ptolemy.data.UnsignedByteToken
Return a new token whose value is the value of this token multiplied by the value of the argument token.
_multiplyElement(Token) - Method in class ptolemy.data.ComplexMatrixToken
Return a new token whose value is the value of this token multiplied by the value of the argument token.
_multiplyElement(Token) - Method in class ptolemy.data.DoubleMatrixToken
Return a new token whose value is the value of this token multiplied by the value of the argument token.
_multiplyElement(Token) - Method in class ptolemy.data.FixMatrixToken
Return a new token whose value is the value of the argument Token multiplyed from the value of each element of this Token.
_multiplyElement(Token) - Method in class ptolemy.data.IntMatrixToken
Return a new token whose value is the value of this token multiplied by the value of the argument scalar token.
_multiplyElement(Token) - Method in class ptolemy.data.LongMatrixToken
Return a new token whose value is the value of this token multiplied by the value of the argument scalar token.
_multiplyElement(Token) - Method in class ptolemy.data.MatrixToken
Return a new token whose value is the value of this token multiplied by the value of the argument scalar token.
_multiplyPolynomials(double[], double[]) - Static method in class ptolemy.data.SmoothToken
Multiply two polynomials.
_name - Variable in class org.kepler.objectmanager.cache.CacheObject
 
_name - Variable in class org.kepler.sms.NamedOntClass
 
_name - Variable in class ptolemy.data.expr.ASTPtLeafNode
The identifier that this leaf node refers to.
_name - Variable in class ptolemy.data.expr.ParseTreeFreeVariableRenamer
The new name.
_name - Variable in class ptolemy.kernel.util.test.TestWorkspace2.Notification
 
_namespaceAtt - Variable in class org.kepler.dataproxy.datasource.geon.GEONDatabaseResource
 
_namespaceAtt - Variable in class org.kepler.dataproxy.datasource.geon.GEONShpResource
 
_nBytesRead - Variable in class org.geon.BinaryFileReader
number of bytes read.
_nColumns - Variable in class ptolemy.data.expr.ASTPtMatrixConstructNode
The number of columns of the matrix construction.
_needCapitalColumnNames() - Method in class org.kepler.util.sql.DatabaseType
Returns true if column names should be capitalized.
_needCapitalColumnNames() - Method in class org.kepler.util.sql.HSQL
Returns true if column names should be capitalized.
_needCapitalColumnNames() - Method in class org.kepler.util.sql.Oracle
Returns true if column names should be capitalized.
_needCapitalTableNames() - Method in class org.kepler.util.sql.DatabaseType
Returns true if table names should be capitalized.
_needCapitalTableNames() - Method in class org.kepler.util.sql.HSQL
Returns true if table names should be capitalized.
_needCapitalTableNames() - Method in class org.kepler.util.sql.Oracle
Returns true if table names should be capitalized.
_needIdentityForAutoInc() - Method in class org.kepler.util.sql.DatabaseType
Returns true if need to call IDENTITY() after INSERTs with autoincrement columns.
_needNew - Variable in class ptolemy.actor.lib.RandomSource
Indicator that a new random number is needed.
_needNewGenerator - Variable in class ptolemy.actor.lib.RandomSource
Indicator that a new generator is needed.
_needReconnectDB - Variable in class org.kepler.provenance.sql.SQLRecording
True when we need to reconnect to the database.
_needReconnectWF - Variable in class org.kepler.provenance.sql.SQLRecording
True when we need to load workflow id from database.
_needSequencesForAutoInc() - Method in class org.kepler.util.sql.DatabaseType
Returns true if need to use sequences for autoincrement columns.
_needSequencesForAutoInc() - Method in class org.kepler.util.sql.Oracle
Returns true if need to use sequences for autoincrement columns.
_needsEvaluation - Variable in class ptolemy.data.expr.Variable
Flags that the expression needs to be evaluated when the value of this variable is queried.
_needWorkflowContents(boolean) - Method in class org.kepler.provenance.Recording
Set the value for needing workflow contents to be registered.
_negate - Variable in class ptolemy.actor.lib.logic.LogicFunction
Deprecated.
True if the intermediate results should be negated.
_negate - Variable in class ptolemy.actor.lib.logic.LogicGate
True if the intermediate results should be negated.
_NEW_MENU_INDEX - Static variable in class ptolemy.gui.Top
Index in the _fileMenuItems array of the New item.
_newActorThreadList - Variable in class ptolemy.actor.process.ProcessDirector
A list of threads created but not started.
_newEffigy(CompositeEntity, String) - Method in class ptolemy.actor.gui.PtolemyEffigy.Factory
Create a new effigy.
_newInsideReceiver() - Method in class ptolemy.actor.IOPort
Create a new receiver compatible with the local director.
_newInsideReceiver(int) - Method in class ptolemy.actor.IOPort
Create a new receiver compatible with the local director.
_newParser() - Method in class ptolemy.plot.plotml.HistogramMLApplet
Create a new parser object for the applet.
_newParser() - Method in class ptolemy.plot.plotml.HistogramMLApplication
Create a new parser object for the application.
_newParser() - Method in class ptolemy.plot.plotml.PlotMLApplet
Create a new parser object for the applet.
_newParser() - Method in class ptolemy.plot.plotml.PlotMLApplication
Create a new parser object for the application.
_newPlot() - Method in class ptolemy.actor.lib.gui.HistogramPlotter
Create a new Histogram plot.
_newPlot() - Method in class ptolemy.actor.lib.gui.PlotterBase
Create a new plot.
_newPlot() - Method in class ptolemy.actor.lib.gui.SketchedSource
Create a new plot.
_newPortMap() - Method in class ptolemy.actor.lib.OrderedRecordAssembler
Return a new _portMap, which is a map between port names and strings.
_newPortMap() - Method in class ptolemy.actor.lib.RecordAssembler
Return a new _portMap, which is a map between port names and strings.
_newProcessThread(Actor, ProcessDirector) - Method in class ptolemy.actor.process.ProcessDirector
Create a new ProcessThread for controlling the actor that is passed as a parameter of this method.
_newReceiver() - Method in class ptolemy.actor.IOPort
Create a new receiver compatible with the executive director.
_newReceiver(int) - Method in class ptolemy.actor.IOPort
Create a new receiver compatible with the executive director.
_newRelationAction - Variable in class ptolemy.vergil.actor.ActorEditorGraphController
Action for creating a new relation.
_newShape() - Method in class ptolemy.vergil.kernel.attributes.ArcAttribute
Return the a new ellipse given a new width and height.
_newShape() - Method in class ptolemy.vergil.kernel.attributes.EllipseAttribute
Return the a new ellipse given a new width and height.
_newShape() - Method in class ptolemy.vergil.kernel.attributes.FilledShapeAttribute
Return the a new shape given a new width and height.
_newShape() - Method in class ptolemy.vergil.kernel.attributes.RectangleAttribute
Return the a new rectangle given a new width and height.
_newShape() - Method in class ptolemy.vergil.kernel.attributes.ResizablePolygonAttribute
Return the a new polygon with the given vertices.
_newTextEffigy(Effigy, String) - Method in class ptolemy.vergil.toolbox.TextEditorTableauFactory
Create a text effigy to be contained by the specified host effigy for the specified text.
_nextExecLSIDStr - Variable in class org.kepler.provenance.sql.SQLRecordingV8
Value of next execution LSID parameter.
_nextFireAt - Variable in class ptolemy.domains.continuous.lib.ContinuousTimeDelay
Records the next scheduled fireAt() call, so that we do not request more than one fireAt() call for a given input event.
_nextLine - Variable in class ptolemy.actor.lib.io.LineReader
The next line after the current line.
_nextOutputIndex - Variable in class ptolemy.actor.lib.DiscreteClock
The index of when the output should be emitted.
_nextOutputTime - Variable in class ptolemy.actor.lib.Clock
Deprecated.
The time for the next output.
_nextOutputTime - Variable in class ptolemy.actor.lib.DiscreteClock
The time for the next output.
_nextScheduleTime - Variable in class ptolemy.actor.Director
Next time the aspect wants to be executed.
_nextTimeFree - Variable in class ptolemy.domains.de.lib.Server
Next time the server becomes free.
_nils - Variable in class ptolemy.data.MatrixToken
HashSet of nil elements, where each element is the index of the element in _value[] that should be nil.
_noActorToFire() - Method in class ptolemy.domains.de.kernel.DEDirector
There are no actor to fire.
_nodeNumber - Variable in class ptolemy.data.expr.CParseTreeCodeGenerator
The node number, used to create unique node names.
_nodeToLocalName - Variable in class ptolemy.data.expr.CParseTreeCodeGenerator
A map from node to local node name.
_noMoreActorsToFire - Variable in class ptolemy.domains.de.kernel.DEDirector
Set to true when it is time to end the execution.
_none - Variable in class ptolemy.vergil.kernel.attributes.ShapeAttribute
A color parameter whose value is a fully transparent white (alpha = 0.0), which is interpreted as no color.
_nonInteractiveSave - Variable in class org.kepler.gui.kar.ExportArchiveAction
 
_nonZeroLength(double[], String) - Static method in class ptolemy.math.DoubleArrayStat
Throw an exception if the array is null or length 0.
_notDone - Variable in class ptolemy.actor.process.ProcessDirector
A flag for determining whether successive iterations will be permitted.
_notifyHierarchyListenersAfterChange() - Method in class ptolemy.kernel.util.NamedObj
If any hierarchy listeners are registered, notify them that a change has occurred in the hierarchy.
_notifyHierarchyListenersBeforeChange() - Method in class ptolemy.kernel.util.NamedObj
If any hierarchy listeners are registered, notify them that a change is about to occur in the hierarchy.
_notifyingActorFiring - Variable in class ptolemy.actor.AtomicActor
Flag that is true if there are actor firing listeners.
_notifyingActorFiring - Variable in class ptolemy.actor.CompositeActor
Flag that is true if there are actor firing listeners.
_notifyListeners(String) - Method in class ptolemy.gui.QueryChooser
Notify all registered listeners that something changed for the specified entry, if it indeed has changed.
_notifyListenersOfCompletion() - Method in class ptolemy.actor.Manager
Deprecated.
_notifyListenersOfStateChange() - Method in class ptolemy.actor.Manager
Propagate the state change event to all the execution listeners.
_notifyListenersOfSuccessfulCompletion() - Method in class ptolemy.actor.Manager
Notify listeners that execution has completed successfully.
_notifyLiveSoundListeners(int) - Method in class ptolemy.media.javasound.LiveSoundCommon
Notify the live sound listeners about a change in an audio parameter.
_notifyPortEventListeners(IOPortEvent) - Method in class ptolemy.actor.IOPort
Send a PortEvent to all port event listeners that have registered with this IOPort.
_notifyValueListeners() - Method in class ptolemy.data.expr.Variable
Notify the value listeners of this variable that this variable changed.
_nRows - Variable in class ptolemy.data.expr.ASTPtMatrixConstructNode
The number of rows of the matrix construction.
_nullPreparedStatements() - Method in class org.kepler.provenance.sql.SQLQueryV8
Set our prepared statements to null.
_nullPreparedStatements() - Method in class org.kepler.provenance.sql.SQLRecording
Set our prepared statements to null.
_nullPreparedStatements() - Method in class org.kepler.provenance.sql.SQLRecordingV7
Set our prepared statements to null.
_nullPreparedStatements() - Method in class org.kepler.provenance.sql.SQLRecordingV8
Set our prepared statements to null.
_numberOfInputTokensSeen - Variable in class ptolemy.actor.lib.NonStrictTest
Number of input tokens seen by this actor in the fire method.
_numberOfInputTokensSeen - Variable in class ptolemy.actor.lib.PublisherNonStrictTest
Number of input tokens seen by this actor in the fire method.
_numInstances - Variable in class org.kepler.spark.operator.Operator
The number of parallel instances for this operator.
_observables - Variable in class org.kepler.spark.mllib.GetLiveMeasurements
 
_offsetFigure(double, double, double, double) - Method in class ptolemy.vergil.basic.WithIconGraphController.NewPortAction
Offset a figure if another figure is already at that location.
_offsets - Variable in class ptolemy.actor.lib.Clock
Deprecated.
Cache of offsets array value.
_offsets - Variable in class ptolemy.actor.lib.DiscreteClock
Cache of offsets array value.
_offsetVertex(double[]) - Method in class ptolemy.vergil.actor.ActorEditorGraphController.NewRelationAction
Offset a figure if another figure is already at that location.
_okAction() - Method in class org.kepler.gui.TabbedDialog
method that is called when user clicks the "OK" button.
_oldXSize - Variable in class ptolemy.actor.lib.image.ImageDisplayJavaSE
The horizontal size of the previous image.
_oldYSize - Variable in class ptolemy.actor.lib.image.ImageDisplayJavaSE
The vertical size of the previous image.
_ontClass - Variable in class org.kepler.sms.NamedOntClass
 
_ontology - Variable in class org.kepler.sms.NamedOntClass
 
_open(File) - Method in class org.kepler.gui.kar.OpenArchiveAction
Open a file dialog to identify a file to be opened, and then call _read() to open the file.
_open() - Method in class ptolemy.gui.Top
Open a file dialog to identify a file to be opened, and then call _read() to open the file.
_open() - Method in class ptolemy.plot.PlotFrame
Open a new file and plot its data.
_openAddDialog(String, String, String, String) - Method in class ptolemy.actor.gui.EditParametersDialog
Open a dialog to add a new parameter.
_openAndReadFirstTwoLines() - Method in class ptolemy.actor.lib.io.LineReader
Open the file and read the first line, putting its value into the _currentLine variable.
_openBaseClassAction - Variable in class ptolemy.vergil.basic.BasicGraphController
The open base class action.
_openCount - Variable in class ptolemy.actor.gui.CompositeActorSimpleApplication
The count of currently open windows.
_openDialog(Frame, NamedObj, ActionEvent) - Method in class ptolemy.vergil.toolbox.ConfigureAction
Open an edit parameters dialog.
_openGraphFrames - Static variable in class ptolemy.vergil.basic.BasicGraphFrame
List of references to graph frames that are open.
_openInstanceAction - Variable in class ptolemy.vergil.actor.ActorController
The action that handles opening an instance.
_openInstanceOrModel(Configuration, NamedObj) - Method in class ptolemy.vergil.modal.TransitionController
Open the instance or the model.
_openInTabAction - Variable in class org.kepler.gui.controller.TabbedActorController
 
_openModel(NamedObj) - Method in class ptolemy.actor.gui.ConfigurationApplication
Open the specified Ptolemy II model.
_openModel(URL, URL, String) - Method in class ptolemy.actor.gui.ConfigurationApplication
Open the specified URL.
_openModel(String) - Method in class ptolemy.actor.gui.test.junit.HTMLAboutJUnitTest
Test HTMLAbout by opening a URL that starts with "about:".
_openURL() - Method in class ptolemy.gui.Top
Open a dialog to enter a URL, and then invoke _read() to open the URL.
_openWindow() - Method in class ptolemy.actor.lib.gui.Display
Open the display window if it has not been opened.
_optionReceived(String, Object) - Method in class org.kepler.webview.actor.WebViewAttribute
 
_OR - Static variable in class ptolemy.actor.lib.logic.LogicFunction
Deprecated.
Perform a logical OR.
_OR - Static variable in class ptolemy.actor.lib.logic.LogicGate
Perform a logical OR.
_order - Variable in class ptolemy.actor.lib.Lattice
The order of the filter (i.e. the number of reflection coefficients)
_orientation - Variable in class org.kepler.monitor.figure.BaseFigure
Arbitrarily initialized to Orientation.HORIZONTAL.
_originalValues - Variable in class ptolemy.actor.gui.Configurer
A record of the original values.
_orphaned - Variable in class org.kepler.sms.NamedOntClass
 
_orthogonalizeRows(Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Orthogonalize the rows of a matrix.
_orthogonalizeRows(double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Given a set of row vectors rowArrays[0] ... rowArrays[n-1], compute : A new set of row vectors out[0] ... out[n-1] which are the orthogonalized versions of each input row vector.
_orthogonalizeRows(float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Given a set of row vectors rowArrays[0] ... rowArrays[n-1], compute : A new set of row vectors out[0] ... out[n-1] which are the orthogonalized versions of each input row vector.
_output - Variable in class ptolemy.kernel.util.StreamChangeListener
The PrintStream that we direct the output to.
_output - Variable in class ptolemy.kernel.util.test.StreamValueListener
The PrintStream that we direct the output to.
_OUTPUT_TRANSITION - Static variable in class ptolemy.domains.modal.kernel.ia.InterfaceAutomatonTransition
The output transition type.
_outputFile - Variable in class org.kepler.gis.actor.io.GISWriter
The output file.
_outputName - Variable in class org.kepler.provenance.TextFileRecording
Output name.
_outputName - Variable in class org.kepler.provenance.XMLRecording
Deprecated.
Output name.
_outputProduced - Variable in class ptolemy.actor.lib.Clock
Deprecated.
Indicator of whether an output was produced in this iteration.
_outputTypeAttr - Variable in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreDataSource
The type of output for data entity.
_overflow - Variable in class ptolemy.math.Quantization
The overflow strategy.
_overrideModuleDependencies - Variable in class org.kepler.gui.kar.ExportArchiveAction
 
_overwriteOutput - Variable in class org.kepler.hadoop.director.HadoopEngine
If true, the output directory will be deleted first.
_owner - Variable in class ptolemy.actor.gui.EditParametersDialog
The owner window.
_owner - Variable in class ptolemy.vergil.basic.SearchResultsDialog
The The frame that, per the user, is generating the dialog.
_padding - Variable in class ptolemy.plot.PlotBox
The factor we pad by so that we don't plot points on the axes.
_palettePane - Variable in class ptolemy.vergil.basic.BasicGraphFrame
The library display panel.
_pane - Variable in class ptolemy.actor.gui.run.CustomizableRunFrame
The pane inside this frame.
_pane - Variable in class ptolemy.actor.gui.run.RunLayoutFrame
The run pane whose layout is being edited.
_panel - Variable in class org.sdm.spa.Pause
 
_paneSize - Variable in class ptolemy.actor.gui.AbstractPlaceableActor
A specification of the size of the pane if it's in its own window.
_paneSize - Variable in class ptolemy.actor.gui.AbstractPlaceableJavaSE
A specification of the size of the pane if it's in its own window.
_parameter - Variable in class ptolemy.actor.parameters.ParameterPort
The associated parameter.
_parameters - Variable in class org.kepler.spark.stub.PairFlatMapFunctionBase
Configuration parameters.
_parametersInvalid - Variable in class ptolemy.actor.lib.comm.HuffmanBasic
Flag that indicates if the parameters are invalid.
_params - Variable in class org.kepler.provenance.RecordingParameters
A mapping of parameter name to Parameter.
_params - Variable in class org.kepler.provenance.sql.SQLRecording
The sql parameters object.
_params - Variable in class org.kepler.provenance.TextFileRecording
Parameters for TextFileRecording
_params - Variable in class org.kepler.provenance.XMLRecording
Deprecated.
Parameters for TextFileRecording
_parent - Variable in class org.kepler.gui.kar.ExportArchiveAction
 
_parent - Variable in class org.kepler.gui.kar.SaveArchiveAction
 
_parent - Variable in class ptolemy.actor.sched.ScheduleElement
The parent schedule of this schedule.
_parent - Variable in class ptolemy.data.expr.ASTPtRootNode
The parent node.
_parent - Variable in class ptolemy.graph.sched.ScheduleElement
The parent schedule of this schedule.
_parseArg(String) - Method in class ptolemy.actor.gui.CompositeActorSimpleApplication
Parse a command-line argument.
_parseArg(String) - Method in class ptolemy.actor.gui.ConfigurationApplication
Parse a command-line argument.
_parseArg(String) - Method in class ptolemy.actor.gui.MoMLSimpleStatisticalApplication
Parse a command-line argument.
_parseArgs(String[]) - Method in class ptolemy.actor.gui.CompositeActorSimpleApplication
Parse the command-line arguments.
_parseArgs(String[]) - Method in class ptolemy.actor.gui.ConfigurationApplication
Parse the command-line arguments.
_parseArgs(String[]) - Method in class ptolemy.actor.gui.MoMLSimpleStatisticalApplication
Parse the command-line arguments.
_parseArgs(String[]) - Method in class ptolemy.actor.gui.PtExecuteApplication
Parse the command-line arguments.
_parseArgs(String[]) - Method in class ptolemy.actor.gui.PtolemyApplication
Parse the command-line arguments.
_parseArgs(String[]) - Method in class ptolemy.plot.compat.PxgraphApplication
Parse those command-line arguments that are relevant to the application only, and refer other arguments to the PxgraphParser helper class.
_parseArgs(String[]) - Method in class ptolemy.plot.PlotApplication
Parse the command-line arguments and make calls to the Plot class accordingly.
_parseArgs(String[]) - Method in class ptolemy.vergil.VergilApplication
Parse the command-line arguments.
_parsedObject - Variable in class ptolemy.actor.gui.properties.GUIAction
The object obtained by parsing the moml text, or null.
_parseIfNecessary() - Method in class ptolemy.data.expr.Variable
Parse the expression, if the current parse tree is not valid.
_parseLine(String) - Method in class ptolemy.plot.Histogram
Parse a line that gives plotting information.
_parseLine(String) - Method in class ptolemy.plot.Plot
Parse a line that gives plotting information.
_parseLine(String) - Method in class ptolemy.plot.PlotBox
Parse a line that gives plotting information.
_parseOutputFromStartingServer(InputStream) - Method in class org.kepler.ddp.director.DDPEngine
Parse the output from the script that starts the server.
_parseOutputFromStartingServer(InputStream) - Method in class org.kepler.spark.director.SparkEngine
Parse the output from the script that starts the server.
_parser - Variable in class ptolemy.actor.gui.ConfigurationApplication
The parser used to construct the configuration.
_parser - Variable in class ptolemy.actor.gui.properties.GUIAction
The parser used to parse the moml text.
_parser - Variable in class ptolemy.moml.MoMLSimpleApplication
The MoMLParser used to parse the model.
_parser - Variable in class ptolemy.plot.plotml.PlotBoxMLParser
The parser.
_parserScope - Variable in class ptolemy.data.expr.Variable
The instance of VariableScope.
_parseSource() - Method in class ptolemy.actor.gui.properties.GUIAction
Parse the configuration source if it has not been parsed, and store the result in protected field GUIAction._parsedObject.
_parseTreeEvaluator - Variable in class ptolemy.domains.modal.kernel.AbstractActionsAttribute
The parse tree evaluator.
_parseTrees - Variable in class ptolemy.domains.modal.kernel.AbstractActionsAttribute
The list of parse trees.
_parseTreeValid - Variable in class ptolemy.data.expr.Variable
Indicator that the parse tree is valid.
_pasteAction - Variable in class ptolemy.vergil.basic.BasicGraphFrame
The paste action.
_pendingOutput - Variable in class ptolemy.actor.lib.MicrostepDelay
A token to send in the next microstep.
_pendingOutputs - Variable in class ptolemy.actor.lib.TimeDelay
A local queue to store the delayed output tokens.
_periodicDirectorHelper - Variable in class ptolemy.domains.sdf.kernel.SDFDirector
Helper class supporting the period parameter.
_phase - Variable in class ptolemy.actor.lib.Clock
Deprecated.
The phase of the next output.
_phase - Variable in class ptolemy.actor.lib.DiscreteClock
The phase of the next output.
_phaseLength - Variable in class ptolemy.domains.sdf.lib.FIR
The phaseLength is ceiling(length/interpolation), where length is the number of taps.
_picture - Variable in class ptolemy.actor.lib.image.ImageDisplayJavaSE
The picture panel.
_piggybacks - Variable in class ptolemy.actor.CompositeActor
List piggybacked objects.
_playbackData - Variable in class ptolemy.media.javasound.LiveSoundCommon
Byte buffer used for playback data.
_playbackIsActive - Variable in class ptolemy.media.javasound.LiveSoundCommon
true is audio playback is currently active.
_plot - Variable in class ptolemy.plot.compat.PxgraphParser
The plot object to which to apply commands.
_plot - Variable in class ptolemy.plot.PlotFormatter
The plot object controlled by this formatter.
_plot - Variable in class ptolemy.plot.plotml.PlotBoxMLParser
The plot object to which to apply commands.
_plotImage - Variable in class ptolemy.plot.PlotBox
An offscreen buffer for improving plot performance.
_plotSize - Variable in class ptolemy.actor.lib.gui.PlotterBaseJavaSE
An attribute that contains the size of the plot.
_plotterBase - Variable in class ptolemy.actor.lib.gui.PlotterBaseJavaSE
The base instance that created the implementation.
_pmf - Variable in class ptolemy.actor.lib.comm.HuffmanBasic
The probability mass function.
_points - Variable in class ptolemy.plot.Histogram
A vector of datasets.
_points - Variable in class ptolemy.plot.Plot
A vector of datasets.
_polymorphicGetMethod(Class, String, Type[], CachedMethod.ArgumentConversion[]) - Static method in class ptolemy.data.expr.CachedMethod
Return the first method in the specified class that has the specified name and can be invoked with the specified argument types.
_populated - Variable in class ptolemy.moml.EntityLibrary
Flag indicating populate() has been called, and hence the configuration should be obtained from the current contents (in case they have changed) rather than from the _configureText.
_populateHistory(List) - Method in class ptolemy.gui.Top
Update the submenu with a history list and add a listener to each line.
_populating - Variable in class ptolemy.actor.LazyTypedCompositeActor
Indicator that we are in the midst of populating.
_populating - Variable in class ptolemy.moml.EntityLibrary
Indicator that we are in the midst of populating.
_port - Variable in class ptolemy.actor.IntermediateReceiver
The port.
_port - Variable in class ptolemy.actor.parameters.PortParameter
The associated port.
_portChoiceChanged() - Method in class org.kepler.sms.actors.MappingRefinementDialog
 
_portConnector - Variable in class org.kepler.provenance.sql.SQLRecordingV8
Class for token dependencies.
_portController - Variable in class ptolemy.vergil.basic.WithIconGraphController
The port controller.
_portEventListeners - Variable in class ptolemy.actor.IOPort
The list of IOPortEventListeners registered with this object.
_portMap - Variable in class ptolemy.actor.lib.RecordAssembler
Keeps track of which name or alias is associated with which port.
_ports(Object) - Method in class ptolemy.vergil.tree.FullTreeModel
Return the list of ports, or an empty list if there are none.
_ports(Object) - Method in class ptolemy.vergil.tree.VisibleTreeModel
Return the list of ports, or an empty list if there are none.
_portTooltip(Port) - Method in class ptolemy.vergil.actor.ExternalIOPortController
Given a port, return a reasonable tooltip message for that port.
_possibleWorkflowChangeStart() - Method in class org.kepler.provenance.sql.SQLRecordingV7
A workflow change may be starting.
_possibleWorkflowChangeStop() - Method in class org.kepler.provenance.sql.SQLRecordingV7
A possible workflow change is stopping.
_postfireReturns - Variable in class ptolemy.actor.sched.StaticSchedulingDirector
The value that the postfire method will return.
_postParse(MoMLParser) - Method in class ptolemy.moml.MoMLChangeRequest
Do nothing.
_postParse(MoMLParser) - Method in class ptolemy.vergil.basic.OffsetMoMLChangeRequest
Offset the locations of top level objects that are created by the change request.
_precision - Variable in class ptolemy.math.FixPointQuantization
The precision.
_preference - Variable in class ptolemy.data.expr.CachedMethod.ArgumentConversion
The preference is n index given an order to the preference of conversions.
_preferredHeight - Variable in class ptolemy.plot.PlotBox
Width and height of component in pixels.
_preferredWidth - Variable in class ptolemy.plot.PlotBox
Width and height of component in pixels.
_prefire - Variable in class ptolemy.actor.sched.StaticSchedulingDirector
The value returned by the prefire() method.
_prepareExportDesignPattern() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Prepare to export a design pattern.
_prepareExportDesignPattern() - Method in class ptolemy.vergil.modal.FSMGraphFrame
Prepare to export a design pattern.
_preParse(MoMLParser) - Method in class ptolemy.moml.MoMLChangeRequest
Do nothing.
_preParse(MoMLParser) - Method in class ptolemy.vergil.basic.OffsetMoMLChangeRequest
Clear the list of top objects.
_previousWorkspaceVersion - Variable in class ptolemy.actor.util.GLBFunction
The workspace version number at time of last update of arguments.
_print() - Method in class org.kepler.objectmanager.data.db.QBEditor
Print the contents.
_print() - Method in class ptolemy.actor.gui.PtolemyFrame
Print the contents.
_print() - Method in class ptolemy.actor.gui.TextEditor
Print the contents.
_print() - Method in class ptolemy.gui.Top
Print the contents.
_print() - Method in class ptolemy.plot.PlotFrame
Print the plot using the native interface.
_printCrossPlatform() - Method in class ptolemy.gui.Top
Print using the cross platform dialog.
_printCrossPlatform() - Method in class ptolemy.plot.PlotFrame
Print using the cross platform dialog.
_printGraph(DirectedGraph) - Method in class ptolemy.actor.test.TestGraphReader
Print information about a graph to standard output.
_printNative() - Method in class ptolemy.gui.Top
Print using the native dialog.
_printNative() - Method in class ptolemy.plot.PlotFrame
Print using the native dialog.
_printPDF - Static variable in class ptolemy.actor.gui.ConfigurationApplication
If true, then print to PDF.
_printPDF() - Method in class ptolemy.actor.gui.ConfigurationApplication
Print each effigy to the first printer with the string "PDF" in the name.
_printPDF() - Method in class ptolemy.gui.Top
If a PDF printer is available print to it.
_printPDF - Static variable in class ptolemy.plot.PlotApplication
If true, then print to PDF.
_printPDF() - Method in class ptolemy.plot.PlotFrame
If a PDF printer is available print to it.
_priority - Variable in class ptolemy.domains.de.kernel.DEEvent
The priority of the event (used when the timestamp, depth and microstep cannot resolve a conflict.
_process - Variable in class org.kepler.dataproxy.datasource.geon.GEONShpResource
 
_processButtonPress(String) - Method in class ptolemy.actor.gui.PortConfigurerDialog
Process a button press.
_processButtonPress(String) - Method in class ptolemy.actor.gui.PtolemyDialog
Process button presses.
_processButtonPress(String) - Method in class ptolemy.vergil.basic.SearchResultsDialog
Process a button press.
_processButtonPress(String) - Method in class ptolemy.vergil.unit.UnitConstraintsDialog
Process a button press.
_processNewEdge(Graph, Edge, IOPort, IOPort) - Method in class ptolemy.actor.GraphReader
Process a new edge corresponding to a given connection in a given graph.
_processNewNode(Graph, Node, Actor) - Method in class ptolemy.actor.GraphReader
Process a new node corresponding to a given actor in a given graph.
_produceIntermediateOutput() - Method in class ptolemy.actor.lib.DiscreteClock
Produce the output required at times between the specified times.
_produceIntermediateOutput() - Method in class ptolemy.domains.continuous.lib.Waveform
Produce the output required at times between the specified times using the specified interpolation method.
_progressBar - Variable in class org.kepler.objectmanager.data.DataSrcProgressFrame
 
_propagate() - Method in class ptolemy.data.expr.Variable
Force evaluation of this variable, unless it is lazy, and call _propagate() on its value dependents.
_propagateExistence(NamedObj) - Method in class ptolemy.actor.parameters.PortParameter
Override the base class to also propagate the associated port.
_propagateExistence(NamedObj) - Method in class ptolemy.kernel.ComponentEntity
Propagate existence of this object to the specified object.
_propagateExistence(NamedObj) - Method in class ptolemy.kernel.ComponentRelation
Propagate existence of this object to the specified object.
_propagateExistence(NamedObj) - Method in class ptolemy.kernel.Port
Propagate existence of this object to the specified object.
_propagateExistence(NamedObj) - Method in class ptolemy.kernel.util.Attribute
Propagate existence of this object to the specified object.
_propagateExistence(NamedObj) - Method in class ptolemy.kernel.util.NamedObj
Propagate existence of this object to the specified object.
_propagateToValueListeners() - Method in class ptolemy.data.expr.Variable
Call propagate() on all value listeners.
_propagateValue(NamedObj) - Method in class ptolemy.actor.lib.gui.PlotterBase
Propagate the value of this object to the specified object.
_propagateValue(NamedObj) - Method in class ptolemy.actor.parameters.SharedParameter
Override the base class to do the propagation only if the specified destination is not shared, because if it is shared, then the value will be propagated in through the sharing mechanism.
_propagateValue(NamedObj) - Method in class ptolemy.actor.parameters.test.TestSharedParameter
Override the base class to do the propagation only if the specified destination is not shared.
_propagateValue(NamedObj) - Method in class ptolemy.data.expr.Variable
Propagate the value of this object to the specified object.
_propagateValue(NamedObj) - Method in class ptolemy.kernel.util.ConfigurableAttribute
Propagate the value of this object to the specified object.
_propagateValue(NamedObj) - Method in class ptolemy.kernel.util.Location
Propagate the value of this object to the specified object.
_propagateValue(NamedObj) - Method in class ptolemy.kernel.util.NamedObj
Propagate the value of this object (if any) to the specified object.
_propagateValue(NamedObj) - Method in class ptolemy.kernel.util.StringAttribute
Propagate the value of this object to the specified object.
_propagateValue(NamedObj) - Method in class ptolemy.moml.unit.UnitAttribute
Propagate the value of this object to the specified object.
_propagateValue(NamedObj) - Method in class ptolemy.vergil.actor.LayoutHint
Propagate the value of this object to the specified object.
_propChangeListener - Variable in class ptolemy.gui.ComponentDialog
A reference to the PropertyChangeListener.
_properties - Variable in class org.kepler.gui.LibrarySearcher
a user setable properties hash
_prototypeDecorator - Variable in class ptolemy.vergil.kernel.AnimationRenderer
The prototype decorator.
_provideAttributes(WebExporter) - Method in class ptolemy.vergil.basic.export.web.DefaultIconLink
Override the base class to define an href attribute to associate with the area of the image map corresponding to its container.
_provideAttributes(WebExporter) - Method in class ptolemy.vergil.basic.export.web.DefaultIconScript
Provide content to the specified web exporter to be included in a web page for the container of this object.
_provideAttributes(WebExporter) - Method in class ptolemy.vergil.basic.export.web.DefaultTitle
Provide content to the specified web exporter to be included in a web page.
_provideAttributes(WebExporter) - Method in class ptolemy.vergil.basic.export.web.DygraphsJSPlotterAttribute
Provide content to the specified web exporter to be included in a web page for the container of this object.
_provideAttributes(WebExporter) - Method in class ptolemy.vergil.basic.export.web.IconLink
Provide content to the specified web exporter to be included in a web page for the container of this object.
_provideAttributes(WebExporter) - Method in class ptolemy.vergil.basic.export.web.IconScript
Provide method call to invoke script that can be included as an attribute of an HTML tag, e.g. onclick="runFunction()" in <button onclick="runFunction()"/>
_provideAttributes(WebExporter) - Method in class ptolemy.vergil.basic.export.web.JSPlotterAttribute
Provide content to the specified web exporter to be included in a web page for the container of this object.
_provideAttributes(WebExporter) - Method in class ptolemy.vergil.basic.export.web.Title
Provide a title for this object to the specified web exporter.
_provideAttributes(WebExporter) - Method in class ptolemy.vergil.basic.export.web.WebContent
Generate attribute web content.
_provideDefaultAttributes(NamedObj, WebExporter) - Method in class ptolemy.vergil.basic.export.web.DefaultIconScript
Return attributes for default events, e.g. onmouseover().
_provideDefaultAttributes(NamedObj, WebExporter) - Method in class ptolemy.vergil.basic.export.web.ParameterDisplayIconScript
Override the base class to provide the parameter table for the specified object.
_provideDefaultContent() - Method in class ptolemy.vergil.basic.export.html.ExportHTMLAction
Provide default HTML content by cloning any default WebExportable attributes provided by the configuration into the model.
_provideEachAttribute(WebExporter, NamedObj) - Method in class ptolemy.vergil.basic.export.web.DefaultIconLink
Provide content to the specified web exporter to be included in a web page for the container of this object.
_provideEachAttribute(WebExporter, NamedObj) - Method in class ptolemy.vergil.basic.export.web.LinkToOpenTableaux
Override the base class to generate a web page or an image file for the specified object, if appropriate, and to provide the href, target, and class attributes to the area attribute associated with the object.
_provideElements(WebExporter) - Method in class ptolemy.vergil.basic.export.web.HTMLImage
Generate the image file and a <table> element holding an <img/> element and a caption for the image..
_provideElements(WebExporter) - Method in class ptolemy.vergil.basic.export.web.HTMLText
Generate a <div> element holding the text content.
_provideElements(WebExporter) - Method in class ptolemy.vergil.basic.export.web.IconScript
Provide content to the specified web exporter to be included in a web page.
_provideElements(WebExporter) - Method in class ptolemy.vergil.basic.export.web.ParameterDisplayIconScript
Provide default content to the specified web exporter to be included in a web page for the container of this object for objects that do not override onmouseover.
_provideElements(WebExporter) - Method in class ptolemy.vergil.basic.export.web.WebContent
Generate element web content.
_psActionInsert - Variable in class org.kepler.provenance.sql.SQLRecording
 
_psActorExecutionTimes - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psActorFireId - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psActorFireStart - Variable in class org.kepler.provenance.sql.SQLRecording
 
_psActorFireStop - Variable in class org.kepler.provenance.sql.SQLRecording
 
_psActorFiringForTokenWrite - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psActorFirings - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psActorFiringsForExecution - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psActorFiringsForTokenRead - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psActorInsert - Variable in class org.kepler.provenance.sql.SQLRecording
 
_psActorNameForFiring - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psActorTypeForFiring - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psAssocDataInsert - Variable in class org.kepler.provenance.sql.SQLRecordingV8
 
_psAssocDataInsertNoDataId - Variable in class org.kepler.provenance.sql.SQLRecordingV8
 
_psAssociatedKeysValuesForExecution - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psChangeExecutionLSID - Variable in class org.kepler.provenance.sql.SQLRecordingV8
 
_psChangeExecutionReferralList - Variable in class org.kepler.provenance.sql.SQLRecordingV8
 
_psChangeExecutionType - Variable in class org.kepler.provenance.sql.SQLRecordingV8
 
_psChangesForTimespan - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psChangesForTimespanOnHost - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psChangeWorkflowName - Variable in class org.kepler.provenance.sql.SQLRecordingV8
 
_psChannelForTokenRead - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psChannelForTokenWrite - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psDataContents - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psDataInsert - Variable in class org.kepler.provenance.sql.SQLRecordingV8
 
_psDataMD5Query - Variable in class org.kepler.provenance.sql.SQLRecordingV8
 
_psDataMD5s - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psDeleteData - Variable in class org.kepler.provenance.sql.SQLRecordingV8
 
_psDeleteExecutions - Variable in class org.kepler.provenance.sql.SQLRecordingV8
 
_psDeleteTagForExecIdAndURN - Variable in class org.kepler.provenance.sql.SQLRecordingV8
 
_psDeleteTags - Variable in class org.kepler.provenance.sql.SQLRecordingV8
 
_psDeleteWorkflowsForNoExecutions - Variable in class org.kepler.provenance.sql.SQLRecordingV8
 
_psDirectorInsert - Variable in class org.kepler.provenance.sql.SQLRecording
 
_psDoesExecutionHaveError - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psEntitiesForChange - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psEntityId - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psEntityIdLSID - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psEntityInsert - Variable in class org.kepler.provenance.sql.SQLRecording
 
_psEntityQuery - Variable in class org.kepler.provenance.sql.SQLRecording
 
_psEntityTokensForExecution - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psEntityType - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psEntityWorkflowId - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psErrorForExecution - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psErrorInsert - Variable in class org.kepler.provenance.sql.SQLRecordingV8
 
_psExecutionForExecutionLSID - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psExecutionForExecutionLSIDWithoutRevision - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psExecutionForOldestReferralExecutionLSIDWithoutRevision - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psExecutionIdsForTags - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psExecutionLSIDForExecution - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psExecutionLSIDs - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psExecutionLSIDsForWorkflowRuns - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psExecutions - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psExecutionsForAnnotation - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psExecutionsForTimespan - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psExecutionsForTimespanOnHost - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psExecutionsForType - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psExecutionsForWorkflow - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psExecutionsForWorkflowNameContains - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psExecutionsForWorkflowRuns - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psExecutionsForWorkflowRuns2 - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psExecutionsForWorkflowRunsAfter - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psExecutionsForWorkflowRunsAt - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psExecutionsForWorkflowRunsBefore - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psGetAssociatedDataDataIdsToDeleteQuery - Variable in class org.kepler.provenance.sql.SQLRecordingV8
 
_psGetAssociatedDataDataIdsToNotDeleteQuery - Variable in class org.kepler.provenance.sql.SQLRecordingV8
 
_psGetPortEventDataIdsToDeleteQuery - Variable in class org.kepler.provenance.sql.SQLRecordingV8
 
_psGetPortEventDataIdsToNotDeleteQuery - Variable in class org.kepler.provenance.sql.SQLRecordingV8
 
_psGetTagForExecIdAndURN - Variable in class org.kepler.provenance.sql.SQLRecordingV8
 
_psGetWfContentsIdsToDeleteQuery - Variable in class org.kepler.provenance.sql.SQLRecordingV8
 
_psGetWfContentsIdsToNotDeleteQuery - Variable in class org.kepler.provenance.sql.SQLRecordingV8
 
_psHostIdForExecution - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psInputRoleToken - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psIsExecutionImported - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psLastChangeTime - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psLastChangeTimeForWorkflowId - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psLastExecutionForWorkflow - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psLastExecutionForWorkflowLSID - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psLastExecutionLSIDForWorkflowLSID - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psLastExecutionLSIDForWorkflowName - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psLastExecutionStartTime - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psLastExecutionStartTimeForWorkflowId - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psLinkInsert - Variable in class org.kepler.provenance.sql.SQLRecording
 
_psMomlForExecutionId - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psMomlForExecutionLSID - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psMoMLMD5sForExecutions - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psOutputRoleToken - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psParamAndPortParamNameValuesForFiring - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psParameterExecInsert - Variable in class org.kepler.provenance.sql.SQLRecordingV8
 
_psParameterInsert - Variable in class org.kepler.provenance.sql.SQLRecording
 
_psParameterValueQuery - Variable in class org.kepler.provenance.sql.SQLRecordingV7
 
_psParamNameValuesForExecution - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psParamNameValuesForFiring - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psParamNameValuesOfSpecificTypeForExecution - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psParamValueAtTimeForWorkflowLSID - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psPortEventData - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psPortEventInsert - Variable in class org.kepler.provenance.sql.SQLRecordingV8
 
_psPortEventInsertWithChecksum - Variable in class org.kepler.provenance.sql.SQLRecordingV8
 
_psPortInsert - Variable in class org.kepler.provenance.sql.SQLRecording
 
_psPortIOBytesRead - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psPortIOBytesWrite - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psPortsForActor - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psRelationInsert - Variable in class org.kepler.provenance.sql.SQLRecording
 
_psTagInsert - Variable in class org.kepler.provenance.sql.SQLRecordingV8
 
_psTagsForExecutionId - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psTagURNsForExecutionId - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psTimestampForTokenWrite - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psTimestampsForActorFiring - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psTimestampsForExecution - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psTimestampsForTokenRead - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psTokenFlowInsert - Variable in class org.kepler.provenance.sql.SQLRecording
 
_psTokensForExecution - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psTokensForFiring - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psTokensReadForFiring - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psTokensWrittenForFiring - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psTokenType - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psTypeForTag - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psUserForExecution - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psUserForExecutionLSID - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psWorkflowChangeInsert - Variable in class org.kepler.provenance.sql.SQLRecordingV7
 
_psWorkflowExecStart - Variable in class org.kepler.provenance.sql.SQLRecording
 
_psWorkflowExecStop - Variable in class org.kepler.provenance.sql.SQLRecording
 
_psWorkflowIdsForNoExecutions - Variable in class org.kepler.provenance.sql.SQLRecordingV8
 
_psWorkflowInsert - Variable in class org.kepler.provenance.sql.SQLRecording
 
_psWorkflowNameForExecutionLSID - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psWorkflowNameForLSID - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psWorkflowQuery - Variable in class org.kepler.provenance.sql.SQLRecording
 
_psWorkflowRunsForExecutionLSIDs - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psWorkflowRunsForExecutions - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_psWorkflows - Variable in class org.kepler.provenance.sql.SQLQueryV8
 
_ptToken - Variable in class ptolemy.data.expr.ASTPtRootNode
Each node stores its type and state information in this variable.
_ptType - Variable in class ptolemy.data.expr.ASTPtRootNode
The type of this node.
_publishedPorts - Variable in class ptolemy.actor.CompositeActor
Keep track of all published ports accessible in this container.
_publisherRelations - Variable in class ptolemy.actor.CompositeActor
Keep track of all relations with published ports accessible in this container.
_putObjectToActorInstance(String, Object) - Method in class org.kepler.scriptengine.BeanShell
Put the given object to the actor instance in the script.
_putObjectToActorInstance(String, Object) - Method in class org.kepler.scriptengine.Groovy
Put the given object to the actor instance in the script.
_putObjectToActorInstance(String, Object) - Method in class org.kepler.scriptengine.Java
Put the given object to the actor instance in the script.
_putObjectToActorInstance(String, Object) - Method in class org.kepler.scriptengine.JRuby
Put the given object to the actor instance in the script.
_putObjectToActorInstance(String, Object) - Method in class org.kepler.scriptengine.Jython
Put the given object to the actor instance in the script.
_putObjectToActorInstance(String, Object) - Method in class org.kepler.scriptengine.ScriptEngineActor
Put the given object to the actor instance in the script.
_qbApp - Variable in class org.kepler.objectmanager.data.db.QBEditor
 
_qbTableauFactory - Variable in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreDataSource
 
_qbTableauFactory - Variable in class org.geon.DatabaseQuery
Query builder tableau factory.
_quantize(Quantization) - Method in class ptolemy.data.FixToken
Return a new token whose value is constrained to comply with a quantization specification.
_query - Variable in class ptolemy.actor.gui.EditParametersDialog
The query window for adding parameters.
_query - Variable in class ptolemy.actor.gui.PtolemyFrame
The query used to specify save as options.
_query - Variable in class ptolemy.vergil.basic.SearchResultsDialog
The query portion of the dialog.
_queryable - Variable in class org.kepler.provenance.sql.SQLRecordingV8
Queryable connection.
_queryable - Variable in class org.kepler.webview.server.handler.ProvenanceHandler
 
_queryForSave() - Method in class org.kepler.gui.KeplerGraphFrame
Open a dialog to prompt the user to save a KAR.
_queryForSave() - Method in class ptolemy.gui.Top
Open a dialog to prompt the user to save the data.
_queue - Variable in class ptolemy.actor.QueueReceiver
This is the queue in which data is stored.
_queue - Variable in class ptolemy.domains.de.lib.Queue
The FIFOQueue.
_queueCounter - Variable in class ptolemy.domains.de.lib.Server
The counter for tie-breaking the queue by insertion order.
_queues - Variable in class ptolemy.domains.de.lib.Server
 
_queueSize - Variable in class ptolemy.domains.de.lib.Server
 
_r - Variable in class org.srb.SProxy
Specify whether to remove recursively.
_random - Variable in class ptolemy.actor.lib.RandomSource
The Random object.
_randomNumberGenerator - Variable in class ptolemy.actor.lib.colt.ColtRandomSource
The low-level random number generator.
_rangesGivenByZooming - Variable in class ptolemy.plot.PlotBox
True if the ranges were given by zooming.
_rateVariables - Variable in class ptolemy.domains.sdf.kernel.SDFScheduler
The list of rate variables that this scheduler is listening to for rate changes.
_read(URL) - Method in class org.kepler.gui.kar.OpenArchiveAction
Read the specified URL.
_read(URL) - Method in class ptolemy.actor.gui.TableauFrame
Read the specified URL.
_read(URL) - Method in class ptolemy.gui.test.TopTest
Read the specified URL.
_read(URL) - Method in class ptolemy.gui.Top
Read the specified URL.
_read(InputStream) - Method in class ptolemy.plot.compat.PxgraphApplet
Read the specified stream, assuming it is pxgraph formatted data.
_read(URL, InputStream) - Method in class ptolemy.plot.compat.PxgraphApplication
Read the specified stream.
_read(InputStream) - Method in class ptolemy.plot.PlotApplet
Read the specified stream.
_read(URL, InputStream) - Method in class ptolemy.plot.PlotFrame
Read the specified stream.
_read(InputStream) - Method in class ptolemy.plot.plotml.PlotMLApplet
Read the specified stream.
_read(URL, InputStream) - Method in class ptolemy.plot.plotml.PlotMLApplication
Read the specified stream.
_read(URL, InputStream) - Method in class ptolemy.plot.plotml.PlotMLFrame
Read the specified stream.
_readBlockedQueues - Variable in class ptolemy.domains.pn.kernel.PNDirector
The set of processes blocked on a read from a receiver.
_readConfiguration(URL) - Method in class ptolemy.actor.gui.ConfigurationApplication
Deprecated.
Use readConfiguration() instead.
_reader - Variable in class org.geon.BinaryFileReader
The current reader for the input file.
_reader - Variable in class org.geon.FileToArray
The current reader for the input file.
_reader - Variable in class org.geon.FileToString
The current reader for the input file.
_reader - Variable in class ptolemy.actor.lib.io.LineReader
The current reader for the input file.
_reader - Variable in class ptolemy.actor.lib.URLReader
The reader to read from.
_readGraph(String[]) - Method in class ptolemy.actor.test.TestGraphReader
Convert a MoML file that contains a Ptolemy II specification into a composite actor representation.
_readInputs() - Method in class ptolemy.actor.lib.hoc.LifeCycleManager
Iterate over input ports and read any available values into the referenced model parameters.
_readInputs(IOPort, int) - Method in class ptolemy.domains.modal.kernel.FSMActor
Read tokens from the given channel of the given input port and make them accessible to the expressions of guards and transitions through the port scope.
_readInputs() - Method in class ptolemy.domains.modal.kernel.FSMDirector
Set the value of the shadow variables for input ports of the controller actor.
_readInputsAndValidateSettables() - Method in class ptolemy.actor.lib.hoc.ModelReference
Iterate over input ports and read any available values into the referenced model parameters and validate settable attributes.
_readModelURLParameter() - Method in class ptolemy.actor.gui.MoMLApplet
Read the modelURL applet parameter.
_readOutputsFromRefinement() - Method in class ptolemy.domains.modal.kernel.FSMDirector
Set the value of the shadow variables for input ports of the controller actor that are defined by output ports of the refinement.
_readPending - Variable in class ptolemy.domains.pn.kernel.PNQueueReceiver
Reference to a thread that is read blocked on this receiver.
_reallocate() - Method in class ptolemy.actor.lib.GradientAdaptiveLattice
 
_reallocate() - Method in class ptolemy.actor.lib.Lattice
Reallocate the internal arrays.
_recalculatePreferredSize(Component) - Method in class ptolemy.gui.Query
Recalculate the preferred size of the entry panel.
_receiver - Variable in class ptolemy.actor.IntermediateReceiver
Target receiver that is wrapped by this intermediate receiver.
_receiverChanged() - Method in class ptolemy.actor.sched.FixedPointDirector
React to the change in receiver status by incrementing the count of known receivers.
_receivers - Variable in class ptolemy.actor.sched.FixedPointDirector
List of all receivers this director has created.
_receivers - Variable in class ptolemy.domains.pn.kernel.PNDirector
The list of all receivers that this director has created.
_reconnectDatabase(boolean) - Method in class org.kepler.provenance.sql.SQLRecording
Reconnect to the database.
_reconnectDatabase(boolean) - Method in class org.kepler.provenance.sql.SQLRecordingV8
Reconnect to the database.
_reconnectWorkflow() - Method in class org.kepler.provenance.sql.SQLRecording
Re-acquire the current workflow id.
_reconnectWorkflow() - Method in class org.kepler.provenance.sql.SQLRecordingV8
Re-acquire the current workflow id.
_record - Variable in class ptolemy.kernel.util.test.TestWorkspaceBase
 
_recordActorFireStop(int, Actor, Date) - Method in class org.kepler.provenance.sql.SQLRecordingV8
Record the end of an actor fire and attempt to serialize the actor's state.
_recorder - Variable in class org.kepler.provenance.Recording
The containing provenance recorder.
_recorderContainer - Variable in class org.kepler.provenance.Recording
The container of the provenance recorder.
_recordFiringEvent(Actor, FiringEvent.FiringEventType, Date) - Method in class org.kepler.provenance.sql.SQLRecording
Record a specific type of firing for an actor.
_recordFiringEvent(Actor, FiringEvent.FiringEventType, Date) - Method in class org.kepler.provenance.sql.SQLRecordingV8
Record a specific type of firing for an actor.
_recordPortEvent(IOPort, ProcessId, boolean, int, Token) - Method in class org.kepler.provenance.opm.OpenProvenanceModelXML
Deprecated.
Record a port read or write.
_recordPortEvent(IOPort, Activity, boolean, int, Token, Date) - Method in class org.kepler.provenance.prov.ProvRecording
Record a port read or write.
_recordPortEvent(IOPort, int, int, boolean, int, Token, IOPort, Date) - Method in class org.kepler.provenance.sql.SQLRecording
Record a port read or write to the token_flow table.
_recordPortEvent(IOPort, int, int, boolean, int, Token, IOPort, Date) - Method in class org.kepler.provenance.sql.SQLRecordingV8
Record a specific type of firing for an actor.
_recordSpecVal - Variable in class org.kepler.provenance.TextFileRecording
Whether to record workflow specification.
_recordSpecVal - Variable in class org.kepler.provenance.XMLRecording
Deprecated.
Whether to record workflow specification.
_recreateFigure() - Method in class ptolemy.vergil.icon.EditorIcon
Recreate the figure.
_recreateFigure() - Method in class ptolemy.vergil.icon.XMLIcon
Recreate the figure.
_rect - Variable in class org.kepler.dataproxy.datasource.geon.GEONDatabaseResource
 
_redo() - Method in class ptolemy.actor.gui.TextEditor
Redo the last undo action.
_redo(NamedObj) - Method in class ptolemy.vergil.basic.layout.kieler.test.junit.KielerJUnitTest
Redo the last operation on the model.
_redoAction - Variable in class ptolemy.gui.UndoListener
The redo action.
_reflectionCoefficients - Variable in class ptolemy.actor.lib.Lattice
Cache of reflection coefficients.
_refreshFlag - Variable in class ptolemy.actor.lib.URLReader
Flag to indicate whether or not to refresh the data between readings.
_refreshOutline() - Method in class org.kepler.profiling.gui.WorkflowRunOutlineTabPane
 
_regActorDirector(NamedObj, boolean) - Method in class org.kepler.provenance.sql.SQLRecording
Convenience routine that regActor and regDirector can use since the schema for actors and directors only differs by "actor" vs "director".
_regex - Static variable in class ptolemy.math.Precision.IntegerFractionPrecisionFormat
Regular expression for IntegerFractionPrecisionFormat.
_regex - Variable in class ptolemy.math.Precision.LengthExponentPrecisionFormat
Regular expression for IntegerFractionPrecisionFormat.
_regex - Static variable in class ptolemy.math.Precision.LengthIntegerPrecisionFormat
Regular expression for IntegerFractionPrecisionFormat.
_regex - Variable in class ptolemy.math.Precision.VHDLPrecisionFormat
Regular expression for IntegerFractionPrecisionFormat.
_registerChange() - Method in class ptolemy.graph.Graph
Register a change to the graph by updating the change counter.
_registerEdge(Edge) - Method in class ptolemy.graph.Graph
Register a new edge in the graph.
_registerEngineFactory() - Method in class org.kepler.scriptengine.Java
Register the Java ScriptEngine factory with in the ScriptEngineManager since it is not loaded in a jar.
_registerEngineFactory() - Method in class org.kepler.scriptengine.ScriptEngineActor
Register an script engine factory with the scrip engine manager.
_registerHandler() - Method in class org.kepler.webview.actor.WebViewAttribute
 
_registerNode(Node) - Method in class ptolemy.graph.DirectedGraph
Register a new node in the graph.
_registerNode(Node) - Method in class ptolemy.graph.Graph
Register a new node in the graph.
_registerShutdownHook() - Method in class ptolemy.actor.Manager
Register a shutdown hook to gracefully stop the execution of a model if the JVM is shut down (by control-C, the user logging out, etc.).
_regParameterReal(NamedObj, RegEntity) - Method in class org.kepler.provenance.sql.SQLRecording
Add an entity to the parameter table.
_regPortReal(TypedIOPort, RegEntity) - Method in class org.kepler.provenance.sql.SQLRecording
Add a port to the port table.
_regPortReal(TypedIOPort, RegEntity) - Method in class org.kepler.provenance.sql.SQLRecordingV8
Add a port to the port table.
_reinitialize() - Method in class ptolemy.actor.lib.MovingAverage
Reinitialize local variables in response to changes in attributes.
_reinitialize() - Method in class ptolemy.domains.sdf.lib.FIR
Reinitialize local variables in response to changes in attributes.
_reinitializeNeeded - Variable in class ptolemy.actor.lib.MovingAverage
Indicator that at least an attribute has been changed since the last initialization.
_reinitializeNeeded - Variable in class ptolemy.domains.sdf.lib.FIR
Indicator that at least one attribute has been changed since the last initialization.
_relationController - Variable in class ptolemy.vergil.actor.ActorViewerGraphController
The relation controller.
_relations(Object) - Method in class ptolemy.vergil.tree.FullTreeModel
Return the list of relations, or an empty list if there are none.
_relations(Object) - Method in class ptolemy.vergil.tree.VisibleTreeModel
Return the list of relations, or an empty list if there are none.
_relationsList - Variable in class ptolemy.kernel.Port
The list of relations for this port.
_relationsWithUnspecifiedWidths(List<?>) - Static method in class ptolemy.actor.RelationWidthInference
Filter the relations for which the width still has to be inferred.
_reloadAccessorsAction - Variable in class ptolemy.vergil.basic.BasicGraphFrame
The action for reloading accessors.
_removeAttribute(Attribute) - Method in class ptolemy.kernel.util.NamedObj
Remove the given attribute.
_removeDefaultContent() - Method in class ptolemy.vergil.basic.export.html.ExportHTMLAction
Remove default HTML content, which includes all instances of WebExportable that are not persistent.
_removeEntity(ComponentEntity) - Method in class ptolemy.actor.gui.Configuration
Remove the specified entity; if that entity is the model directory, then exit the application.
_removeEntity(ComponentEntity) - Method in class ptolemy.actor.gui.Effigy
Remove the specified entity from this container.
_removeEntity(ComponentEntity) - Method in class ptolemy.actor.gui.ModelDirectory
Remove the specified entity, and if there are no more models in the directory, except possibly the configuration, then remove this directory from its container.
_removeEntity(ComponentEntity) - Method in class ptolemy.actor.LazyTypedCompositeActor
Remove the specified entity.
_removeEntity(ComponentEntity) - Method in class ptolemy.actor.lib.hoc.ReflectComposite
Override the base class to remove the ports and inside relations of this actor.
_removeEntity(ComponentEntity) - Method in class ptolemy.kernel.CompositeEntity
Remove the specified entity.
_removeIconAction - Variable in class ptolemy.vergil.actor.ActorController
The action that handles removing a custom icon.
_removeIconAction - Variable in class ptolemy.vergil.actor.ExternalIOPortController
The action that handles removing a custom icon.
_removeIconAction - Static variable in class ptolemy.vergil.basic.WithIconGraphController
The remove custom icon action.
_removeIconAction - Variable in class ptolemy.vergil.kernel.AttributeWithIconController
The remove custom icon action.
_removeLink(Link) - Method in class ptolemy.vergil.actor.ActorGraphModel
Remove a link from the link set.
_removeParameters() - Method in class org.kepler.ddp.director.DDPEngine
Remove engine-specific parameters from the director.
_removeParameters() - Method in class org.kepler.hadoop.director.HadoopEngine
Remove engine-specific parameters from the director.
_removeParameters() - Method in class org.kepler.spark.director.SparkEngine
Remove engine-specific parameters from the director.
_removePort(Port) - Method in class ptolemy.actor.lib.Assert
Override the base class to remove the corresponding output port, if the specified port is an input port, or the corresponding input port, if the specified port is an output port.
_removePort(Port) - Method in class ptolemy.actor.lib.hoc.ReflectComposite
Override the base class to remove the associated port on the inside entity and the link to it, if there is one.
_removePort(CompositeEntity) - Method in class ptolemy.domains.modal.modal.ModalBasePort
Remove a port from the current container.
_removePort(Port) - Method in class ptolemy.kernel.Entity
Remove the specified port.
_removeReceivers(Relation) - Method in class ptolemy.actor.IOPort
Remove the receivers associated with the specified relation, if there are any.
_removeRefinementAction - Variable in class ptolemy.vergil.modal.modal.HierarchicalStateController
The action that removes a refinement.
_removeRelation(ComponentRelation) - Method in class ptolemy.actor.LazyTypedCompositeActor
Remove the specified relation.
_removeRelation(ComponentRelation) - Method in class ptolemy.kernel.CompositeEntity
Remove the specified relation.
_removeTokens - Variable in class ptolemy.domains.de.lib.Queue
The number of tokens that should be removed from the queue in postfire().
_renameAction - Variable in class ptolemy.vergil.kernel.AttributeController
Action to launch rename dialog.
_renderNode(Object) - Method in class ptolemy.vergil.actor.ClassDefinitionController
Draw the node at its location.
_renderNode(Object) - Method in class ptolemy.vergil.basic.LocatableNodeController
Render the specified node.
_replaceConstantNode(ASTPtRootNode) - Method in class ptolemy.data.expr.ParseTreeSpecializer
 
_replay() - Method in class org.kepler.profiling.gui.CurrentExecutionPanel
Replay the last execution.
_replay() - Method in class org.kepler.profiling.gui.ExecutionMonitorPanel
Replay an execution.
_replay() - Method in class org.kepler.profiling.gui.PreviousExecutionPanel
Replay the last execution using the record player constructed when the workflow run was selected in the workflow run manager.
_report(String) - Method in class ptolemy.vergil.basic.RunnableGraphController
If there is an associated BasicGraphFrame, use it to report a message.
_report(Throwable) - Method in class ptolemy.vergil.basic.RunnableGraphController
If there is an associated BasicGraphFrame, use it to report an error.
_reportDebugMessage(String) - Method in class ptolemy.domains.continuous.kernel.ContinuousDirector
Expose the debug method to the package.
_requestFinishOnReceivers() - Method in class ptolemy.actor.process.ProcessDirector
Call requestFinish() on all receivers.
_requestFiring() - Method in class ptolemy.domains.de.kernel.DEDirector
Request that the container of this director be refired in some future time specified by the first event of the local event queue.
_reset() - Method in class ptolemy.domains.continuous.kernel.ContinuousODESolver
Reset the solver, indicating to it that we are starting an integration step.
_reset() - Method in class ptolemy.domains.continuous.kernel.solver.ExplicitRK23Solver
Reset the solver, indicating to it that we are starting an integration step.
_reset() - Method in class ptolemy.domains.continuous.kernel.solver.ExplicitRK45Solver
Reset the solver, indicating to it that we are starting an integration step.
_resetAllReceivers() - Method in class ptolemy.actor.sched.FixedPointDirector
Reset all receivers to unknown status and clear out variables used to track which actors fired in the last iteration.
_resetScheduledTasks() - Method in class ptolemy.plot.Histogram
Reset a scheduled redraw tasks.
_resetScheduledTasks() - Method in class ptolemy.plot.Plot
Reset a scheduled redraw tasks.
_resetScheduledTasks() - Method in class ptolemy.plot.PlotBox
Reset a scheduled redraw tasks.
_resolveDeadlock() - Method in class ptolemy.actor.process.CompositeProcessDirector
Attempt to resolve a deadlock and return true if the deadlock no longer exists and successive iterations are allowed; if the deadlock still exists then return false indicating that future iterations are not allowed.
_resolveDeadlock() - Method in class ptolemy.actor.process.ProcessDirector
Return false indicating that deadlock has not been resolved and that execution will be discontinued.
_resolveDeadlock() - Method in class ptolemy.domains.pn.kernel.TimedPNDirector
Return false on detection of a real deadlock.
_resolvedType - Variable in class ptolemy.actor.TypedIOPort
The resolved type of the port.
_resolveInternalDeadlock() - Method in class ptolemy.actor.process.CompositeProcessDirector
Return false indicating that resolution of an internal deadlock was unsuccessful and execution should discontinue.
_resolveInternalDeadlock() - Method in class ptolemy.domains.pn.kernel.PNDirector
Resolve an artificial deadlock and return true.
_result - Variable in class ptolemy.actor.lib.Expression
Variable storing the result of the expression evaluation so that subclasses can access it in an overridden fire() method.
_result - Variable in class ptolemy.data.expr.ParseTreeSpecializer
 
_result() - Method in class ptolemy.graph.analysis.strategy.CachedStrategy
Return the result (cached value) of the analyzer on the associated graph.
_resultKeys - Variable in class org.kepler.spark.stub.ScriptEnginePairFlatMapFunction
A list of result keys.
_results - Variable in class org.kepler.gui.LibrarySearcher
Description of the Field
_resultsTable - Variable in class ptolemy.vergil.basic.SearchResultsDialog
Table for search results.
_resultsTableModel - Variable in class ptolemy.vergil.basic.SearchResultsDialog
Model for the table.
_resultValues - Variable in class org.kepler.spark.stub.ScriptEnginePairFlatMapFunction
A list of result values.
_reverse() - Method in class ptolemy.vergil.actor.LayoutHint.LayoutHintItem
Reverse the list of bend points.
_reverseDependencies - Variable in class ptolemy.actor.util.CausalityInterfaceForComposites
Computed reverse dependencies (the key is now an output port).
_rightComponent - Variable in class ptolemy.vergil.basic.BasicGraphFrame
The right component for this editor.
_rightKeyPressed - Variable in class ptolemy.actor.lib.gui.ArrowKeySensor
A flag indicating if the right arrow key has been pressed since the last firing of the actor.
_rightKeyReleased - Variable in class ptolemy.actor.lib.gui.ArrowKeySensor
A flag indicating if the right arrow key has been released since the last firing of the actor.
_rightPadding - Variable in class ptolemy.plot.PlotBox
Right padding.
_root - Variable in class ptolemy.vergil.tree.EntityTreeModel
The root of the tree.
_rotatePortsClockwise - Variable in class ptolemy.vergil.actor.ActorController
An action that handles rotating the ports by 90 degrees.
_rotatePortsCounterclockwise - Variable in class ptolemy.vergil.actor.ActorController
An action that handles rotating the ports by 90 degrees.
_rounding - Variable in class ptolemy.math.Quantization
The rounding strategy.
_roundingValue - Variable in class ptolemy.vergil.icon.NameIcon
Most recent value of the rounding parameter.
_roundingValue - Variable in class ptolemy.vergil.kernel.attributes.RectangleAttribute
Most recent value of the rounding parameter.
_rows(Complex[][]) - Static method in class ptolemy.math.ComplexMatrixMath
Return the number of rows of a matrix.
_rows(double[][]) - Static method in class ptolemy.math.DoubleMatrixMath
Return the number of rows of a matrix.
_rows(float[][]) - Static method in class ptolemy.math.FloatMatrixMath
Return the number of rows of a matrix.
_rows(Fraction[][]) - Static method in class ptolemy.math.FractionMatrixMath
Return the number of rows of a matrix.
_rows(int[][]) - Static method in class ptolemy.math.IntegerMatrixMath
Return the number of rows of a matrix.
_rows(long[][]) - Static method in class ptolemy.math.LongMatrixMath
Return the number of rows of a matrix.
_run(CompositeActorSimpleApplication, String[]) - Static method in class ptolemy.actor.gui.CompositeActorSimpleApplication
Run the application.
_run - Variable in class ptolemy.actor.gui.ConfigurationApplication
If true, then -run was specified on the command line.
_run20x - Variable in class ptolemy.actor.gui.ConfigurationApplication
If true, then -run20x was specified on the command line.
_runID - Variable in class org.kepler.profiling.gui.WorkflowRunOutlineTabPane
The execution id.
_runWorkflowLifecyclePerInput - Variable in class org.kepler.ddp.actor.pattern.stub.StubBaseActor
If true, the full the full lifecycle of the sub-workflow will be executed for each input.
_runWorkflowLifecyclePerInput - Variable in class org.kepler.hadoop.execution.KeplerAppBase
If true, the entire workflow lifecycle is executed for each input.
_runWorkflowLifecyclePerInput - Variable in class org.kepler.spark.stub.KeplerPairFlatMapFunction
If true, the entire workflow lifecycle is executed for each input.
_sameJVM - Variable in class org.kepler.ddp.director.DDPEngine
If true, run and use server in the same JVM as Kepler.
_sampleRate - Variable in class ptolemy.media.javasound.LiveSoundCommon
The sample rate.
_save() - Method in class org.kepler.objectmanager.data.db.QBEditor
Override the base class to apply the change to the attribute.
_save() - Method in class ptolemy.actor.gui.TableauFrame
Save the model to the current file, determined by the uri parameter of the associated effigy, or if that has not been set or is not a writable file, or if the effigy has been set non-modifiable, then invoke _saveAs().
_save() - Method in class ptolemy.gui.Top
Save the model to the current file, if there is one, and otherwise invoke _saveAs().
_save() - Method in class ptolemy.plot.PlotFrame
Save the plot to the current file, determined by the and _file protected variable.
_save() - Method in class ptolemy.vergil.toolbox.TextEditorForStringAttributes
Override the base class to apply the change to the attribute.
_saveAs(String) - Method in class org.kepler.gui.KeplerGraphFrame
Query the user for a filename, save the model to that file, and open a new window to view the model.
_saveAs() - Method in class ptolemy.actor.gui.PtolemyFrame
Query the user for a filename, save the model to that file, and open a new window to view the model.
_saveAs() - Method in class ptolemy.actor.gui.TableauFrame
Query the user for a filename, save the model to that file, and open a new window to view the model.
_saveAs(String) - Method in class ptolemy.actor.gui.TableauFrame
Query the user for a filename, save the model to that file, and open a new window to view the model.
_saveAs() - Method in class ptolemy.actor.gui.TextEditor
Query the user for a filename, save the model to that file, and open a new window to view the model.
_saveAs() - Method in class ptolemy.gui.Top
Query the user for a filename and save the model to that file.
_saveAs() - Method in class ptolemy.plot.PlotFrame
Query the user for a filename and save the plot to that file.
_saveAsFileDialog() - Method in class ptolemy.gui.Top
_saveAsFileDialogComponent() - Method in class ptolemy.actor.gui.PtolemyFrame
Create and return a file dialog for the "Save As" command.
_saveAsFileDialogComponent() - Method in class ptolemy.gui.Top
Create and return a FileDialog for the "Save As" command.
_saveAsFileDialogComponent() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Create and return a file dialog for the "Save As" command.
_saveAsHelper(String) - Method in class ptolemy.actor.gui.TableauFrame
Query the user for a filename, save the model to that file, and open a new window to view the model.
_saveAsJFileChooserComponent() - Method in class ptolemy.actor.gui.PtolemyFrame
Create and return a file dialog for the "Save As" command.
_saveAsJFileChooserComponent() - Method in class ptolemy.gui.Top
Create and return a JFileChooser for the "Save As" command.
_saveAsJFileChooserComponent() - Method in class ptolemy.vergil.basic.BasicGraphFrame
Create and return a file dialog for the "Save As" command.
_saveBufferSizes(Map) - Method in class ptolemy.domains.sdf.kernel.BaseSDFScheduler
Create and set a parameter in each relation according to the buffer sizes calculated for this system.
_saveContainerRates(Map) - Method in class ptolemy.domains.sdf.kernel.BaseSDFScheduler
Push the rates calculated for this system up to the contained Actor, but only if the ports do not have a set rates.
_SAVED - Static variable in class ptolemy.gui.Top
Indicator that a file is saved.
_saveFile - Variable in class org.kepler.gui.kar.ExportArchiveAction
 
_saveFiringCounts(Map) - Method in class ptolemy.domains.sdf.kernel.BaseSDFScheduler
Create and set a parameter in each actor according to the number of times it will fire in one execution of the schedule.
_saveInLibraryAction - Variable in class ptolemy.vergil.actor.ActorGraphFrame
The action for saving the current model in a library.
_savekar - Variable in class org.kepler.gui.kar.ExportArchiveAction
The SaveKAR object is a GUI free helper class for saving KARs.
_savekar - Variable in class org.kepler.kar.ExportRunsToKAR
The SaveKAR object is a GUI free helper class for saving KARs.
_saveSucceeded - Variable in class org.kepler.gui.kar.ExportArchiveAction
 
_sawThrowable - Variable in class ptolemy.moml.MoMLSimpleApplication
The exception seen by executionError().
_schedule(NamedObj, Time) - Method in class ptolemy.actor.Director
Schedule an actor for execution on a ExecutionAspect.
_schedule - Variable in class ptolemy.actor.sched.Schedule
The list of schedule elements contained by this schedule.
_schedule(NamedObj, Time) - Method in class ptolemy.domains.de.kernel.DEDirector
Schedule an actor for execution on a ExecutionAspect.
_schedule(NamedObj, Time) - Method in class ptolemy.domains.modal.kernel.FSMActor
Schedule an actor for execution on a ExecutionAspect.
_schedule - Variable in class ptolemy.graph.sched.Schedule
The list of schedule elements contained by this schedule.
_scheduledRedraw() - Method in class ptolemy.plot.Histogram
Perform a scheduled redraw.
_scheduledRedraw() - Method in class ptolemy.plot.Plot
Perform a scheduled redraw.
_scheduledRedraw() - Method in class ptolemy.plot.PlotBox
Perform a scheduled redraw.
_schema - Variable in class org.kepler.provenance.sql.SQLRecording
The schema containing table and column definitions.
_schemaAttr - Variable in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreDataSource
Schema defination of data file
_schemaAttr - Variable in class org.geon.DatabaseQuery
The schema of the database.
_schemaAttrName - Variable in class org.kepler.objectmanager.data.db.QBTableauFactory
The name of the schema definition string attribute (not editted)
_schemaDef - Variable in class org.geon.DatabaseQuery
Schema definition interface, used by the query builder
_scope - Variable in class ptolemy.data.expr.ParseTreeFreeVariableCollector
 
_scope - Variable in class ptolemy.data.expr.ParseTreeFreeVariableRenamer
The scope.
_scope - Variable in class ptolemy.data.expr.ParseTreeSpecializer
 
_scope - Variable in class ptolemy.data.expr.ParseTreeTypeInference
 
_scroller - Variable in class ptolemy.actor.gui.HTMLViewer
The main scroll pane.
_scrollPane - Variable in class org.kepler.objectmanager.data.db.QBEditor
The scroll pane containing the text area.
_scrollPane - Variable in class ptolemy.actor.gui.TextEditor
The scroll pane containing the text area.
_search() - Method in class ptolemy.vergil.basic.DependencyResultsDialog
Perform a search and update the results table.
_search() - Method in class ptolemy.vergil.basic.SearchResultsDialog
Perform a search and update the results table.
_searchData - Variable in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreDataSource
The value which were used for search
_searchPane - Variable in class org.kepler.gui.LibrarySearcher
Description of the Field
_selectDataset() - Method in class ptolemy.plot.plotml.EditablePlotMLApplication
Open a dialog to select a dataset to edit.
_selectTab(AbstractDialogTab) - Method in class org.kepler.gui.TabbedDialog
bring the requested tab to the front in the TabbedDialog.
_semanticTypes - Variable in class org.kepler.objectmanager.cache.CacheObject
 
_sendAbsentToAllUnknownOutputsOf(Actor) - Method in class ptolemy.actor.sched.FixedPointDirector
Call the send(index, null) method of each output port with unknown status of the specified actor.
_sendResponseWithError(HttpServerRequest, String) - Method in class org.kepler.webview.server.handler.BaseHandler
Send an error response.
_sendResponseWithFile(HttpServerRequest, File, boolean) - Method in class org.kepler.webview.server.handler.BaseHandler
Send a file with the response.
_sendResponseWithSuccessJson(HttpServerRequest, JsonObject) - Method in class org.kepler.webview.server.handler.BaseHandler
Send an success response with json.
_sendResponseWithSuccessText(HttpServerRequest, String, String) - Method in class org.kepler.webview.server.handler.BaseHandler
Send an success response with text.
_sendStreamOutput(String) - Method in class org.sdm.spa.Ssh2Exec
This function streams the output line by line.
_server - Variable in class org.kepler.webview.server.handler.BaseHandler
 
_server - Variable in class org.kepler.webview.server.handler.WebSocketServerBaseHandler
 
_serverStartStopLock - Static variable in class org.kepler.ddp.director.DDPEngine
A static object used for synchronization.
_set - Variable in class ptolemy.data.expr.ParseTreeFreeVariableCollector
 
_setAttributeName(String) - Method in class ptolemy.vergil.kernel.attributes.AttributeValueAttribute
Set the attribute name.
_setBackgroundColor(Component) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Set the background color of the specified component to the default, or if it is given, to the background color given in the preferences.
_setButtonsVisibility(boolean) - Method in class ptolemy.plot.PlotBox
Deprecated.
Use #setButtons(boolean) instead.
_setCause(Throwable) - Method in exception ptolemy.kernel.util.KernelException
Set the cause to the specified throwable.
_setCause(Throwable) - Method in exception ptolemy.kernel.util.KernelRuntimeException
Set the cause to the specified throwable.
_setCenter(JGraph, Point2D) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Set the center location of the visible part of a specific pane.
_setConstant(Token, int) - Method in class ptolemy.actor.IOPort
Set a constant token so that every call to IOPort.get(int) or IOPort.get(int,int) replaces the returned token(s) with this specified token.
_setCurrentConnectionMap() - Method in class ptolemy.domains.modal.kernel.FSMActor
Set the map from input ports to boolean flags indicating whether a channel is connected to an output port of the refinement of the current state.
_setCurrentConnectionMap() - Method in class ptolemy.domains.modal.kernel.FSMDirector
Set the map from input ports to boolean flags indicating whether a channel is connected to an output port of the refinement of the current state.
_setCurrentRefinement(Refinement) - Method in class org.kepler.ddp.actor.ExecutionChoice
Set the refinement to execute.
_setCurrentState(State) - Method in class ptolemy.domains.modal.kernel.FSMDirector
Set the current state of this actor.
_setDirector(Director) - Method in class ptolemy.actor.CompositeActor
Set the local director for execution of this CompositeActor.
_setDirectory(File) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Deprecated.
_setDirty(boolean) - Method in class ptolemy.actor.gui.PtolemyDialog
Set the boolean that determines if the GUI has a change that has not applied to the system.
_setDropIntoEnabled(boolean) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Enable or disable drop into.
_setFailedTestCount(Object) - Static method in class ptolemy.util.test.junit.TclTests
Set the cached value of the count of the number of failed tests.
_setFormat(String) - Method in class org.kepler.ddp.actor.pattern.AtomicPatternActor
Set the format, and add any associated parameters.
_setInput(boolean) - Method in class ptolemy.domains.modal.modal.ModalBasePort
If the argument is true, make the port an input port.
_setInputConstraints() - Method in class org.kepler.actor.io.ArrayOfRecordsWriter
Set the type constraints and multiport property of the input port.
_setLabels(Vector) - Method in class ptolemy.moml.unit.Unit
Set the labels of the Unit.
_setMessage(String) - Method in exception ptolemy.actor.process.TerminateProcessException
Sets the error message to the specified string.
_setMessage(String) - Method in exception ptolemy.kernel.util.KernelException
Sets the error message to the specified string.
_setMessage(String) - Method in exception ptolemy.kernel.util.KernelRuntimeException
Sets the error message to the specified string.
_setMultiport(boolean) - Method in class ptolemy.domains.modal.modal.ModalBasePort
If the argument is true, make the port a multiport.
_setName(String) - Method in class ptolemy.domains.modal.modal.ModalBasePort
Set the name of the port, and mirror the change in all the mirror ports.
_SetOfStates() - Constructor for class ptolemy.domains.sdf.optimize.OptimalScheduleFinder._SetOfStates
 
_setOutput(boolean) - Method in class ptolemy.domains.modal.modal.ModalBasePort
If the argument is true, make the port an output port.
_setPadding(double) - Method in class ptolemy.plot.PlotBox
Set the padding multiple.
_setParent(Instantiable) - Method in class ptolemy.kernel.InstantiableNamedObj
Specify the parent for this object.
_setPlotSize(int, int) - Method in class ptolemy.plot.PlotApplet
Given the size of the applet, set the size of the plot.
_setPlotSize(int, int) - Method in class ptolemy.plot.plotml.EditablePlotMLApplet
Given the size of the applet, set the size of the plot.
_setPortTypes(DDPPatternActor) - Method in class org.kepler.ddp.director.DDPEngine
Set the port types inside a cloned pattern actor.
_setPortTypes(DDPPatternActor) - Method in class org.kepler.hadoop.director.HadoopEngine
Set the port types inside a cloned pattern actor.
_setPreparedStatementValue(PreparedStatement, int, Token) - Method in class org.geon.DatabaseAccessor
Set a parameter value in a prepared statement.
_setProductionConsumptionRates() - Method in class ptolemy.domains.modal.kernel.MultirateFSMDirector
Set the production and consumption rates based on the refinement of the current state, after descending through a hierarchy of state machines.
_setProgressBarMaximum(int) - Method in class ptolemy.util.StreamExec
Set the maximum of the progress bar.
_setRound(int) - Method in class ptolemy.domains.continuous.kernel.ContinuousODESolver
Set the round for the next integration step.
_setRound(int) - Method in class ptolemy.domains.continuous.kernel.solver.ExplicitRK23Solver
Set the round for the next integration step.
_setRound(int) - Method in class ptolemy.domains.continuous.kernel.solver.ExplicitRK45Solver
Set the round for the next integration step.
_setScheduler(Scheduler) - Method in class ptolemy.actor.sched.StaticSchedulingDirector
Set the local scheduler for execution of this Director.
_setScrollerSize(int, int) - Method in class ptolemy.actor.gui.HTMLViewer
Set the scroller size.
_setScrollerSize(int, int) - Method in class ptolemy.vergil.actor.DocViewer
Override the base class to do nothing.
_setState(Manager.State) - Method in class ptolemy.actor.Manager
Set the state of execution and notify listeners if the state actually changes.
_setTimeForRefinement(Actor) - Method in class ptolemy.domains.modal.kernel.FSMActor
Set the refinements current time equal to the matching environment, or if there is no environment, do nothing.
_setToken(Token) - Method in class ptolemy.data.expr.Variable
Set the token value and type of the variable.
_setTokenAndNotify(Token) - Method in class ptolemy.actor.parameters.DoubleRangeParameter
 
_setTokenAndNotify(Token) - Method in class ptolemy.actor.parameters.IntRangeParameter
 
_setTokenAndNotify(Token) - Method in class ptolemy.data.expr.Variable
Set the token value and type of the variable, and notify the container that the value (and type, if appropriate) has changed.
_setType(ASTPtRootNode, Type) - Method in class ptolemy.data.expr.ParseTreeTypeInference
 
_setType(int) - Method in class ptolemy.moml.unit.UnitTerm
 
_setTypeConstraints() - Method in class ptolemy.actor.parameters.ParameterPort
Set the type constraints between the protected member _parameter and this port.
_setTypeConstraints() - Method in class ptolemy.actor.parameters.PortParameter
Set the type constraints between the protected member _port and this parameter.
_setTypesFromConfiguration(ConfigurationProperty) - Method in class org.kepler.ddp.actor.pattern.AtomicPatternActor
Set the key and value types from the types in the configuration property.
_setTypesFromConfiguration(ConfigurationProperty) - Method in class org.kepler.ddp.actor.pattern.DDPDataSink
Set the key and value types from the types in the configuration property.
_setTypesFromConfiguration(ConfigurationProperty) - Method in class org.kepler.ddp.actor.pattern.DDPDataSource
Set the key and value types from the types in the configuration property.
_setupAutoComplete() - Method in class org.kepler.tagging.gui.NonComboBoxTest
 
_setUpLookInsideAction() - Method in class ptolemy.vergil.modal.TransitionController
Set up look inside actions, if appropriate.
_setupOK - Variable in class ptolemy.actor.gui.PtolemyApplet
Set this to false if the setup of the model during the init() method fails.
_setupSimple() - Method in class org.kepler.tagging.gui.NonComboBoxTest
 
_setURLReader(BufferedReader) - Method in class ptolemy.actor.lib.URLReader
Set the reader.
_setUTerms(Vector) - Method in class ptolemy.moml.unit.UnitExpr
 
_setWidth(Graphics, float) - Method in class ptolemy.plot.Plot
If the graphics argument is an instance of Graphics2D, then set the current stroke to the specified width.
_shape - Variable in class org.kepler.monitor.figure.BaseFigure
The shape associated with the figure
_showHelp() - Method in class ptolemy.actor.gui.PtolemyDialog
Display the help URL.
_showNameable(Throwable) - Method in class ptolemy.actor.gui.ActorGraphicalMessageHandler
Open the level of hierarchy of the model that contains the Nameable referred to by the KernelException or KernelRuntimeException.
_showNameable(Throwable) - Method in class ptolemy.gui.UndeferredGraphicalMessageHandler
Open the level of hierarchy of the model that contains the Nameable referred to by the KernelException or KernelRuntimeException.
_showNameable(Throwable) - Method in class ptolemy.vergil.VergilGraphicalMessageHandler
Open the level of hierarchy of the model that contains the Nameable referred to by the KernelException or KernelRuntimeException and possibly zoom in.
_showStackTrace(Throwable, String) - Method in class ptolemy.gui.UndeferredGraphicalMessageHandler
Display a stack trace dialog.
_shrinkCoordinates(Rectangle2D, Rectangle2D, int, float) - Static method in class ptolemy.vergil.basic.layout.kieler.KielerGraphUtil
Reposition a small object in a big object according to a given direction (NORTH, EAST, SOUTH, WEST).
_SIMPLE_DATE_FORMAT - Static variable in class ptolemy.data.DateToken
The format in which dates are reported.
_simplify() - Method in class ptolemy.math.Fraction
Reduce the fraction to lowest terms by dividing the Numerator and Denominator by their Greatest Common Divisor.
_simulateExternalInputs(IOPort, int, List, LinkedList) - Method in class ptolemy.domains.sdf.kernel.SDFScheduler
Simulate the consumption of tokens from the given external input port.
_simulateInputConsumption(Actor, int) - Method in class ptolemy.domains.sdf.kernel.SDFScheduler
Simulate the consumption of tokens by the actor during execution of the given number of firings.
_singleItemKAR - Variable in class org.kepler.gui.kar.ExportArchiveAction
The purpose of KARs are for grouping things together.
_sinkActor - Variable in class org.kepler.hadoop.execution.KeplerAppBase
The actor reading output from the workflow.
_sinkActor - Variable in class org.kepler.spark.stub.KeplerPairFlatMapFunction
A sink actor used for reading data from the workflow and writing it to Spark.
_sketchedSource - Variable in class ptolemy.domains.sdf.demo.Sketch.SketchApplet
The SketchedSource actor.
_skipToNextPhase() - Method in class ptolemy.actor.lib.DiscreteClock
Skip the current firing phase and request a refiring at the time of the next one.
_skipToNextPhase() - Method in class ptolemy.domains.continuous.lib.Waveform
Skip the current firing phase and request a refiring at the time of the next one.
_skipWidthInference() - Method in class ptolemy.actor.IORelation
Determines whether width inference should be skipped or not.
_sleep() - Method in class ptolemy.actor.gui.test.junit.HTMLAboutJUnitTest
Sleep the current thread, which is usually not the Swing Event Dispatch Thread.
_sleep() - Static method in class ptolemy.vergil.basic.export.ExportModel
Sleep the current thread, which is usually not the Swing Event Dispatch Thread.
_sleep() - Static method in class ptolemy.vergil.basic.layout.kieler.test.junit.KielerJUnitTest
Sleep the current thread, which is usually not the Swing Event Dispatch Thread.
_sleep() - Method in class ptolemy.vergil.basic.test.junit.ExportImageJUnitTest
Sleep the current thread, which is usually not the Swing Event Dispatch Thread.
_solveBalanceEquations(CompositeActor, List, Map) - Method in class ptolemy.domains.sdf.kernel.SDFScheduler
Solve the balance equations for the list of connected Actors.
_soundConsumers - Variable in class ptolemy.media.javasound.LiveSoundCommon
The list of sound consumers.
_source - Variable in class ptolemy.actor.lib.gui.PlotterBase
The source specified in configure().
_source - Variable in class ptolemy.actor.lib.URLReader
String for the URL.
_sourceActor - Variable in class org.kepler.hadoop.execution.KeplerAppBase
The actor writing input to the workflow.
_sourceActor - Variable in class org.kepler.spark.stub.KeplerPairFlatMapFunction
A source actor used for reading data from Spark and writing it the Kepler workflow.
_sourcePort - Variable in class ptolemy.actor.util.GLBFunction
The source port.
_spacingValue - Variable in class ptolemy.vergil.icon.NameIcon
Most recent value of the spacing parameter.
_specialMenu - Variable in class ptolemy.actor.gui.PlotTableauFrame
Special menu for this frame.
_specialMenu - Variable in class ptolemy.plot.PlotFrame
Special menu for this frame.
_specifiedPlotRectangle - Variable in class ptolemy.plot.PlotBox
User specified plot rectangle, null if none specified.
_splitName(String) - Static method in class ptolemy.kernel.util.NamedObj
Split the specified name at the first period and return the two parts as a two-element array.
_splitPane - Variable in class ptolemy.vergil.basic.BasicGraphFrame
The split pane for library and editor.
_sqlAttr - Variable in class org.ecoinformatics.seek.datasource.darwincore.DarwinCoreDataSource
The SQL command to operate in data file
_sqlAttr - Variable in class org.geon.DatabaseQuery
Hidden variable containing the xml representation of the query as returned by the query builder.
_sqlAttrName - Variable in class org.kepler.objectmanager.data.db.QBTableauFactory
The name of the sql definition string attribute that is to be edited.
_sqlContext - Variable in class org.kepler.spark.actor.SparkSQLActor
 
_stackTraceToString(Throwable) - Method in class ptolemy.gui.BasicJApplet
Get the stack trace and return as a string.
_state - Variable in class ptolemy.domains.modal.modal.Case
Deprecated.
The one and only state.
_stateColors - Variable in class org.kepler.monitor.figure.StateFigure
 
_StateComparator() - Constructor for class ptolemy.domains.sdf.optimize.OptimalScheduleFinder._StateComparator
 
_StateComparatorLowestValue() - Constructor for class ptolemy.domains.sdf.optimize.OptimalScheduleFinder._StateComparatorLowestValue
 
_stateController - Variable in class ptolemy.vergil.modal.FSMViewerGraphController
The state controller.
_stateRefinementsToPostfire - Variable in class ptolemy.domains.modal.kernel.FSMActor
State refinements to postfire(), as determined by the fire() method.
_stateSerializer - Variable in class org.kepler.provenance.Recording
A serializer for states.
_statistics - Variable in class ptolemy.actor.gui.ConfigurationApplication
If true, then -statistics was specified on the command line.
_statusBar - Variable in class ptolemy.gui.Top
The status bar.
_statusLabel - Variable in class org.kepler.profiling.gui.ExecutionMonitorPanel
Status label at the bottom of the table.
_stdIn - Static variable in class ptolemy.actor.lib.URLReader
Standard in as a reader.
_stop() - Method in class ptolemy.actor.gui.PtolemyApplet
Stop the execution.
_stopFireRequested - Variable in class ptolemy.domains.de.kernel.DEDirector
Flag that stopFire() has been called.
_stopRequested - Variable in class ptolemy.actor.AtomicActor
Indicator that a stop has been requested by a call to stop().
_stopRequested - Variable in class ptolemy.actor.CompositeActor
Indicator that a stop has been requested by a call to stop().
_stopRequested - Variable in class ptolemy.actor.Director
Indicator that a stop has been requested by a call to stop().
_stopRequested - Variable in class ptolemy.domains.modal.kernel.FSMActor
Indicator that a stop has been requested by a call to stop().
_stringResponse(Handler<AsyncResult<JsonArray>>, String, String) - Method in class org.kepler.webview.server.app.AbstractApp
 
_stringTokenValuesHaveSurroundingQuotes() - Method in class org.kepler.provenance.DefaultQuery
Returns true if getTokenValue() for StringTokens has surrounding double-quotes. i.e., the value was saved using StringToken.toString() (which adds double-quotes) instead of StringToken.stringValue().
_stringTokenValuesHaveSurroundingQuotes() - Method in class org.kepler.provenance.prov.ProvQuery
Returns false since ProvRecording saves StringToken values using StringToken.stringValue(), which does not add surrounding double-quotes.
_stringTokenValuesHaveSurroundingQuotes() - Method in class org.kepler.provenance.sql.SQLQueryV8
Returns true since SQLRecordingV8 saves StringToken values using StringToken.toString(), which adds surrounding double-quotes.
_stripNumericSuffix(String) - Static method in class ptolemy.kernel.util.NamedObj
Return a string that is identical to the specified string except any trailing digits are removed.
_stub - Variable in class org.kepler.spark.operator.Operator
The function to execute.
_subscribedPorts - Variable in class ptolemy.actor.CompositeActor
Keep track of all published ports accessible in this container.
_subtract(Token) - Method in class ptolemy.data.AbstractConvertibleToken
Return a new token whose value is the value of the argument token subtracted from the value of this token.
_subtract(Token) - Method in class ptolemy.data.AbstractNotConvertibleToken
Return a new token whose value is the value of the argument token subtracted from the value of this token.
_subtract(Token) - Method in class ptolemy.data.ArrayToken
Return a new token whose value is the value of the argument token subtracted from the value of this token.
_subtract(ScalarToken) - Method in class ptolemy.data.BooleanToken
Subtraction is not supported in Boolean algebras.
_subtract(MatrixToken) - Method in class ptolemy.data.ComplexMatrixToken
Return a new token whose value is the value of the argument Token subtracted to the value of this Token.
_subtract(ScalarToken) - Method in class ptolemy.data.ComplexToken
Return a new token whose value is the value of the argument token subtracted from the value of this token.
_subtract(Token) - Method in class ptolemy.data.DateToken
Subtract is not supported for Dates.
_subtract(MatrixToken) - Method in class ptolemy.data.DoubleMatrixToken
Return a new token whose value is the value of the argument token subtracted from the value of this token.
_subtract(ScalarToken) - Method in class ptolemy.data.DoubleToken
Return a new token whose value is the value of the argument token subtracted from the value of this token.
_subtract(ScalarToken) - Method in class ptolemy.data.expr.ConcreteScalarToken
Throw an exception.
_subtract(MatrixToken) - Method in class ptolemy.data.FixMatrixToken
Return a new token whose value is the value of the argument Token subtracted to the value of this Token.
_subtract(ScalarToken) - Method in class ptolemy.data.FixToken
Return a new token whose value is the value of the argument token subtracted from the value of this token.
_subtract(ScalarToken) - Method in class ptolemy.data.FloatToken
Return a new token whose value is the value of the argument token subtracted from the value of this token.
_subtract(MatrixToken) - Method in class ptolemy.data.IntMatrixToken
Return a new token whose value is the value of the argument token subtracted from the value of this token.
_subtract(ScalarToken) - Method in class ptolemy.data.IntToken
Return a new token whose value is the value of the argument token subtracted from the value of this token.
_subtract(MatrixToken) - Method in class ptolemy.data.LongMatrixToken
Return a new token whose value is the value of the argument token subtracted from the value of this token.
_subtract(ScalarToken) - Method in class ptolemy.data.LongToken
Return a new token whose value is the value of the argument token subtracted from the value of this token.
_subtract(MatrixToken) - Method in class ptolemy.data.MatrixToken
Return a new token whose value is the value of the argument token subtracted from the value of this token.
_subtract(ScalarToken) - Method in class ptolemy.data.PetiteToken
Return a new token whose value is the value of the argument token subtracted from the value of this token.
_subtract(Token) - Method in class ptolemy.data.RecordToken
Return a new token whose value is the field-wise subtraction of this token and the argument.
_subtract(ScalarToken) - Method in class ptolemy.data.ScalarToken
Return a new token whose value is the value of the argument token subtracted from the value of this token.
_subtract(ScalarToken) - Method in class ptolemy.data.ShortToken
Return a new token whose value is the value of the argument token subtracted from the value of this token.
_subtract(ScalarToken) - Method in class ptolemy.data.SmoothToken
Return a new token whose value is the value of the argument token subtracted from the value of this token.
_subtract(Token) - Method in class ptolemy.data.StringToken
Return a new token whose value is the value of the argument token subtracted from the value of this token.
_subtract(Token) - Method in class ptolemy.data.UnionToken
Return a new token whose value is the subtraction of this token and the argument.
_subtract(ScalarToken) - Method in class ptolemy.data.UnsignedByteToken
Return a new token whose value is the value of the argument token subtracted from the value of this token.
_subtractCategoryExponents(ScalarToken) - Method in class ptolemy.data.ScalarToken
Subtract the corresponding unit category exponents of the argument token from that of this token.
_subtractElement(Token) - Method in class ptolemy.data.ComplexMatrixToken
Return a new token whose value is the value of the argument Token subtracted from the value of each element of this Token.
_subtractElement(Token) - Method in class ptolemy.data.DoubleMatrixToken
Return a new token whose value is the value of the argument Token subtracted from the value of each element of this Token.
_subtractElement(Token) - Method in class ptolemy.data.FixMatrixToken
Return a new token whose value is the value of the argument Token subtracted from the value of each element of this Token.
_subtractElement(Token) - Method in class ptolemy.data.IntMatrixToken
Return a new token whose value is the value of the argument Token subtracted from the value of each element of this Token.
_subtractElement(Token) - Method in class ptolemy.data.LongMatrixToken
Return a new token whose value is the value of the argument Token subtracted from the value of each element of this Token.
_subtractElement(Token) - Method in class ptolemy.data.MatrixToken
Return a new token whose value is the value of the argument Token subtracted from the value of each element of this Token.
_subtractElementReverse(Token) - Method in class ptolemy.data.ComplexMatrixToken
Return a new token whose value is the value of the argument Token subtracted from the value of each element of this Token.
_subtractElementReverse(Token) - Method in class ptolemy.data.DoubleMatrixToken
Return a new token whose value is the value of the argument Token subtracted from the value of each element of this Token.
_subtractElementReverse(Token) - Method in class ptolemy.data.FixMatrixToken
Return a new token whose value is the value of the argument Token subtracted from the value of each element of this Token.
_subtractElementReverse(Token) - Method in class ptolemy.data.IntMatrixToken
Return a new token whose value is the value of the argument Token subtracted from the value of each element of this Token.
_subtractElementReverse(Token) - Method in class ptolemy.data.LongMatrixToken
Return a new token whose value is the value of the argument Token subtracted from the value of each element of this Token.
_subtractElementReverse(Token) - Method in class ptolemy.data.MatrixToken
Return a new token whose value is the value of each element of this Token subtracted from the value the argument Token.
_subtractReverse(Token) - Method in class ptolemy.data.ArrayToken
Return a new token whose value is the value of this token subtracted from the value of the argument token.
_subWorkflows - Static variable in class org.kepler.ddp.director.DDPEngine
A mapping of model name to model.
_suppressVariableSubstitution - Variable in class ptolemy.data.expr.Variable
True to suppress variable substitution in string mode.
_synchronizeToRealTime() - Method in class ptolemy.actor.sched.FixedPointDirector
Synchronize to real time, if appropriate.
_tableau - Variable in class ptolemy.actor.lib.gui.PlotterBaseJavaSE
The Plotter tableau.
_tableau - Variable in class ptolemy.vergil.actor.lib.VisualModelReference
Tableau that has been created (if any).
_tabName - Variable in class org.kepler.profiling.gui.ViewWatchingTabPane
The tab name.
_taps - Variable in class ptolemy.domains.sdf.lib.FIR
Local cache of the tap values.
_target - Variable in class org.kepler.gui.AbstractDialogTab
 
_target - Variable in class ptolemy.actor.gui.EditParametersDialog
The target object whose parameters are being edited.
_target - Variable in class ptolemy.vergil.basic.SearchResultsDialog
The entity on which search is performed.
_targetType - Variable in class org.kepler.gui.AbstractDialogTab
 
_tentativeNextOutputTime - Variable in class ptolemy.actor.lib.Clock
Deprecated.
The tentative time for the next output.
_terminate - Variable in class ptolemy.domains.pn.kernel.PNQueueReceiver
Flag indicating whether finish has been requested.
_test - Static variable in class ptolemy.actor.gui.CompositeActorSimpleApplication
If true, then auto exit after a few seconds.
_test - Static variable in class ptolemy.actor.gui.ConfigurationApplication
If true, then auto exit after a few seconds.
_test - Static variable in class ptolemy.actor.gui.MoMLSimpleStatisticalApplication
If true, then auto exit after a few seconds.
_test - Static variable in class ptolemy.plot.PlotApplication
If true, then auto exit after a few seconds.
_testTime - Variable in class ptolemy.kernel.util.test.TestWorkspaceBase
 
_text - Variable in class org.kepler.dataproxy.datasource.geon.GEONDatabaseResource
 
_text - Variable in class ptolemy.actor.lib.gui.PlotterBase
The text specified in configure().
_textAreaSetRowsAndRepackParent(JTextArea, int) - Static method in class ptolemy.gui.Query
Resize the textArea and repack the containing ComponentDialog.
_textWriter - Variable in class org.kepler.provenance.TextFileRecording
Output writer.
_TIME_INCREMENTS - Static variable in class ptolemy.domains.continuous.kernel.solver.ExplicitRK23Solver
The ratio of time increments within one integration step.
_TIME_INCREMENTS - Static variable in class ptolemy.domains.continuous.kernel.solver.ExplicitRK45Solver
The ratio of time increments within one integration step.
_timedRepaint() - Method in class ptolemy.plot.PlotBox
Return whether repainting happens by a timed thread.
_timeResolution() - Method in class ptolemy.actor.util.Time
Return the time resolution for this Time object, which in this class is the time resolution of the director given in the constructor.
_timestamp - Variable in class ptolemy.domains.de.kernel.DEEvent
The timestamp of the event.
_toggleCheckbox - Variable in class org.kepler.profiling.gui.WorkflowRunOutlineTabPane
A check box for toggling something in the outline.
_token - Variable in class ptolemy.actor.Mailbox
The token held.
_token - Variable in class ptolemy.actor.sched.FixedPointReceiver
The token held.
_token - Variable in class ptolemy.domains.de.lib.Queue
Token received in the fire() method for inclusion in the queue in the postfire() method.
_tokenMap - Variable in class ptolemy.actor.lib.Expression
Map from input port name to input value.
_tokens - Variable in class ptolemy.domains.de.kernel.DEReceiver
List for storing tokens.
_tokenSentToCommunicationAspect - Variable in class ptolemy.actor.Director
Flag set to true if a token has been sent to a communication aspect by any port/receiver where the aspect is enabled.
_tolerance - Variable in class ptolemy.actor.lib.NonStrictTest
A double that is read from the tolerance parameter specifying how close the input has to be to the value given by correctValues.
_tolerance - Variable in class ptolemy.actor.lib.PublisherNonStrictTest
A double that is read from the tolerance parameter specifying how close the input has to be to the value given by correctValues.
_toolbar - Variable in class ptolemy.vergil.basic.BasicGraphFrame
The toolbar.
_toplevel - Variable in class ptolemy.actor.gui.PtolemyApplet
The top-level composite actor, created in the init() method.
_toplevel - Variable in class ptolemy.moml.MoMLSimpleApplication
The toplevel model that is created and then destroyed.
_topLibrary - Variable in class ptolemy.vergil.basic.BasicGraphFrame
The library.
_topPack - Variable in class ptolemy.actor.gui.TableauFrame
Set in pack() if an alternate topPack is used.
_topPadding - Variable in class ptolemy.plot.PlotBox
Top padding.
_toString(KEdge) - Static method in class ptolemy.vergil.basic.layout.kieler.KielerGraphUtil
Debug output a KEdge to a String, i.e. will represent all bend points in the String.
_toString(KNode) - Static method in class ptolemy.vergil.basic.layout.kieler.KielerGraphUtil
Debug output a KNode to a String, i.e. will represent the whole subgraph starting with this node recursively and also present all outgoing edges of all nodes.
_toString(KNode, int) - Static method in class ptolemy.vergil.basic.layout.kieler.KielerGraphUtil
Debug output a KNode to a String, i.e. will represent the whole subgraph starting with this node recursively and also present all outgoing edges of all nodes.
_trace(String) - Method in class ptolemy.data.expr.ParseTreeEvaluator
Add a record to the current trace corresponding to the given message.
_traceEnter(ASTPtRootNode) - Method in class ptolemy.data.expr.ParseTreeEvaluator
Add a record to the current trace corresponding to the start of the evaluation of the given node.
_traceLeave(ASTPtRootNode) - Method in class ptolemy.data.expr.ParseTreeEvaluator
Add a record to the current trace corresponding to the completion of the evaluation of the given node.
_trainingTokens - Variable in class ptolemy.actor.lib.NonStrictTest
List to store tokens for training mode.
_trainingTokens - Variable in class ptolemy.actor.lib.PublisherNonStrictTest
List to store tokens for training mode.
_transferInputs(IOPort) - Method in class ptolemy.actor.Director
Transfer at most one data token from the given input port of the container to the ports it is connected to on the inside.
_transferOutputs(IOPort) - Method in class org.kepler.ddp.actor.ExecutionChoiceDirector
Transfer data from output ports in an ExecutionChoice actor.
_transferOutputs(IOPort) - Method in class ptolemy.actor.Director
Transfer at most one data token from the given output port of the container to the ports it is connected to on the outside..
_transferOutputs(IOPort) - Method in class ptolemy.domains.modal.kernel.FSMDirector
Transfer at most one data token from the given output port of the container to the ports it is connected to on the outside.
_transferPortParameterInputs() - Method in class ptolemy.actor.CompositeActor
Read inputs from ParameterPorts and update.
_transferSize - Variable in class ptolemy.media.javasound.LiveSoundCommon
The number of audio samples to transfer per channel when getSamples() is invoked.
_transformTopology(Graph) - Method in class ptolemy.actor.GraphReader
Perform post-processing on the entire graph to complete the conversion.
_transitionController - Variable in class ptolemy.vergil.modal.FSMViewerGraphController
The transition controller.
_transitiveClosureAnalysis - Variable in class ptolemy.graph.DirectedGraph
The graph analysis for computation of transitive closure.
_treeView - Variable in class ptolemy.vergil.basic.BasicGraphFrame
The tree view of the model, used for browsing large models.
_treeViewModel - Variable in class ptolemy.vergil.basic.BasicGraphFrame
The tree view model.
_treeViewScrollPane - Variable in class ptolemy.vergil.basic.BasicGraphFrame
The tree view scroll pane.
_trigger - Variable in class org.kepler.gui.AnnotatedPTreePopupListener
 
_triggered - Variable in class ptolemy.actor.lib.Source
Indicator of whether trigger inputs have arrived since the last output.
_trimLiveFigures() - Method in class ptolemy.vergil.icon.DynamicEditorIcon
Trim the list of figures to discard entries that are no longer live.
_typeInference - Variable in class ptolemy.data.expr.ParseTreeEvaluator
 
_typeStr - Variable in class org.kepler.gis.actor.io.GISWriter
The output type.
_typesValid - Variable in class ptolemy.actor.TypedAtomicActor
Whether or not the resolved types are still valid.
_ulx - Variable in class ptolemy.plot.PlotBox
The x value of the upper left corner of the plot rectangle in pixels.
_uly - Variable in class ptolemy.plot.PlotBox
The y value of the upper left corner of the plot rectangle in pixels.
_undo - Variable in class ptolemy.actor.gui.TextEditor
The undo listener.
_undo() - Method in class ptolemy.actor.gui.TextEditor
Undo the last action.
_undo - Variable in class ptolemy.gui.UndoListener
The undo manager.
_undo(NamedObj) - Method in class ptolemy.vergil.basic.layout.kieler.test.junit.KielerJUnitTest
Undo the last operation on the model.
_undoAction - Variable in class ptolemy.gui.UndoListener
The undo action.
_unitCategoryExponents - Variable in class ptolemy.data.ScalarToken
The unit category exponents.
_unitSolverDialogAction - Variable in class ptolemy.vergil.basic.BasicGraphController
The UnitSolverDialog action.
_unsupportedVisitException(String) - Method in class ptolemy.data.expr.AbstractParseTreeVisitor
Return an exception that describes an unsupported node type.
_update() - Method in class org.kepler.monitor.figure.BaseFigure
A subclass implements this method to do the actual update of the this figure.
_update() - Method in class org.kepler.monitor.figure.ProgressBarFigure
Updates the appearance of this progress bar.
_update() - Method in class org.kepler.monitor.figure.QualityFigure
 
_update() - Method in class org.kepler.monitor.figure.TrafficLightFigure
Sets the color for each light according to current state.
_update() - Method in class ptolemy.vergil.actor.ActorGraphModel
Update the graph model.
_update() - Method in class ptolemy.vergil.basic.AbstractBasicGraphModel
Update the graph model.
_update() - Method in class ptolemy.vergil.modal.FSMGraphModel
Update the graph model.
_update2(Object) - Method in class org.kepler.monitor.figure.QualityFigure
Update color of rectangle based on quality thresholds and score
_updateArguments() - Method in class ptolemy.actor.util.GLBFunction
Update the arguments used in getValue(), which are the InequalityTerms and Types of the destination ports.
_updateConnectedActorsStatus(Actor) - Method in class ptolemy.domains.ddf.kernel.DDFDirector
Update the enabling status of the given actor and all actors connected to this actor.
_updateContainerName() - Method in class org.kepler.provenance.Recording
Update the container's name.
_updateFigures() - Method in class ptolemy.vergil.icon.UpdatedValueIcon
Update the figures that were created by this icon to reflect the new attribute value.
_updateFunction(BooleanToken, BooleanToken) - Method in class ptolemy.actor.lib.logic.LogicFunction
Deprecated.
Calculate the function on the given arguments.
_updateFunction(BooleanToken, BooleanToken) - Method in class ptolemy.actor.lib.logic.LogicGate
Calculate the function on the given arguments.
_updateHistory(String, boolean) - Method in class org.kepler.gui.KeplerGraphFrame
Add the name of the last file open or set the name to the first position if already in the list
_updateHistory(String, boolean) - Method in class ptolemy.gui.Top
Add the name of the last file open or set the name to the first position if already in the list.
_updateInputTokenConsumptionRates(TypedCompositeActor) - Method in class ptolemy.domains.modal.kernel.MultirateFSMDirector
Extract the token consumption rates from the input ports of the current refinement and update the rates of the input ports of the modal model containing the refinement.
_updateKeyValueTypes() - Method in class org.kepler.ddp.actor.pattern.AtomicPatternActor
Update the key and value types.
_updateKeyValueTypes() - Method in class org.kepler.ddp.actor.pattern.DDPDataSink
Update the key and value types.
_updateKeyValueTypes() - Method in class org.kepler.ddp.actor.pattern.DDPDataSource
Update the key and value types.
_updateLayouts() - Method in class ptolemy.actor.gui.run.PtolemyFormEditor
Update the layouts.
_updateLinks() - Method in class ptolemy.actor.SubscriberPort
Update the connection to the publisher, if there is one.
_updateLinks() - Method in class ptolemy.actor.SubscriptionAggregatorPort
Update the connection to the publishers, if there are any.
_updateOutputTokenProductionRates(TypedCompositeActor) - Method in class ptolemy.domains.modal.kernel.MultirateFSMDirector
Extract the token production rates from the output ports of the current refinement and update the production and initial production rates of the output ports of the modal model containing the refinement.
_updateParameterExecTable() - Method in class org.kepler.provenance.sql.SQLRecordingV8
Add all the parameter ids to the parameter_exec table.
_updatePublisherPorts(Entity) - Method in class ptolemy.actor.SubscriberPort
Traverse the model, starting at the specified object and examining objects below it in the hierarchy, to find all instances of PublisherPort and make sure that they have registered their port.
_updateRedoState() - Method in class ptolemy.gui.UndoListener.RedoAction
Depending on the whether the undo manager can redo, enable and disable the undo state.
_updateStates() - Method in class ptolemy.actor.lib.Clock
Deprecated.
Update the states and request refiring if necessary.
_updateTentativeValues() - Method in class ptolemy.actor.lib.Clock
Deprecated.
Copy values committed in initialize() or in the last postfire() into the corresponding tentative variables.
_updateTentativeValues() - Method in class ptolemy.actor.lib.TriggeredClock
Deprecated.
Copy values committed in initialize() or in the last postfire() into the corresponding tentative variables.
_updateUndoState() - Method in class ptolemy.gui.UndoListener.UndoAction
Depending on the whether the undo manager can undo, enable and disable the undo state.
_updateWindowAttributes(Frame, NamedObj, JGraph) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Update the size, zoom and position of the window for a specific model and JGraph.
_updateWorkflowID(boolean) - Method in class org.kepler.provenance.sql.SQLRecording
Update workflow ID either by retrieving the id from an existing workflow in the database or creating a new one.
_upKeyPressed - Variable in class ptolemy.actor.lib.gui.ArrowKeySensor
A flag indicating if the up arrow key has been pressed since the last firing of the actor.
_upKeyReleased - Variable in class ptolemy.actor.lib.gui.ArrowKeySensor
A flag indicating if the up arrow key has been released since the last firing of the actor.
_upload - Variable in class org.kepler.gui.kar.ExportArchiveAction
 
_usage() - Method in class ptolemy.actor.gui.CompositeActorSimpleApplication
Return a string summarizing the command-line arguments.
_usage() - Method in class ptolemy.actor.gui.ConfigurationApplication
Return a string summarizing the command-line arguments.
_usage() - Method in class ptolemy.actor.gui.MoMLSimpleStatisticalApplication
Return a string summarizing the command-line arguments.
_usage() - Method in class ptolemy.actor.gui.PtExecuteApplication
Return a string summarizing the command-line arguments.
_usage() - Method in class ptolemy.plot.compat.PxgraphApplication
Return a string summarizing the command-line arguments.
_usage() - Method in class ptolemy.plot.PlotApplication
Return a string summarizing the command-line arguments.
_usage() - Method in class ptolemy.vergil.VergilApplication
Return a string summarizing the command-line arguments.
_USE_NEW_WIDTH_INFERENCE_ALGO - Static variable in class ptolemy.actor.IORelation
Indicate whether the new or the old width inference algo should be used This is a packaged field.
_usecolor - Variable in class ptolemy.plot.PlotBox
Indicator whether to use _colors.
_useCurrentTimeForElapsed - Variable in class org.kepler.profiling.gui.ExecutionMonitorPanel
If true, the current time can be used to calculate the elapsed execution time of an actor.
_validateSettables(Collection) - Method in class ptolemy.kernel.CompositeEntity
Validate attributes deeply contained by this object if they implement the Settable interface by calling their validate() method.
_validateSettables(Collection) - Method in class ptolemy.kernel.Entity
Validate attributes deeply contained by this object if they implement the Settable interface by calling their validate() method.
_validateSettables(Collection) - Method in class ptolemy.kernel.util.NamedObj
Validate attributes deeply contained by this object if they implement the Settable interface by calling their validate() method.
_value - Variable in class org.geon.DBConnectionToken
 
_value - Variable in class ptolemy.actor.util.BooleanDependency
The value.
_value - Variable in class ptolemy.data.DoubleToken
The double value.
_value - Variable in class ptolemy.data.ObjectToken
The actual Object.
_valueListeners - Variable in class ptolemy.data.expr.Variable
Listeners for changes in value.
_valueType - Variable in class org.kepler.ddp.actor.pattern.AtomicPatternActor
The value type.
_variableToRename - Variable in class ptolemy.data.expr.ParseTreeFreeVariableRenamer
The variable to be renamed.
_vectorizeFirings(int, Map, Map) - Method in class ptolemy.domains.sdf.kernel.SDFScheduler
Multiply all of the repetition rates by the given vectorizationFactor.
_verbose - Variable in class ptolemy.kernel.util.NamedObj
Flag that is true if detailed debug information is necessary.
_versionString - Variable in class org.ptolemy.commons.VersionSpecification
The version string.
_VERTICAL_PADDING - Static variable in class ptolemy.vergil.icon.TableIcon
The amount of padding to use around the edges.
_verticalScrollBar - Variable in class org.kepler.gui.KeplerGraphFrame
Vertical scrollbar.
_viewAreas - Variable in class org.kepler.gui.ViewManager
 
_viewComboBoxes - Variable in class org.kepler.gui.ViewManager
 
_viewIsSelected - Variable in class org.kepler.profiling.gui.ViewWatchingTabPane
If true, the view containing this tab is selected.
_viewMenu - Variable in class ptolemy.actor.gui.TableauFrame
The view menu.
_viewPanes - Variable in class org.kepler.gui.ViewManager
 
_visibleAttributes(Object) - Method in class org.kepler.gui.WorkflowOutlineTreeModel
Return the list of Attributes that we want to be visible in the outline view, or an empty list if there are none.
_visitAllChildren(ASTPtRootNode) - Method in class ptolemy.data.expr.AbstractParseTreeVisitor
Loop through all of the children of this node, visiting each one of them, which will cause their token value to be determined.
_visitAllChildren(ASTPtRootNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableCollector
Loop through all of the children of this node, visiting each one of them, which will cause their token value to be determined.
_visitAllChildren(ASTPtRootNode) - Method in class ptolemy.data.expr.ParseTreeFreeVariableRenamer
Loop through all of the children of this node, visiting each one of them, which will cause their token value to be determined.
_visitChild(ASTPtRootNode, int) - Method in class ptolemy.data.expr.AbstractParseTreeVisitor
Visit the child with the given index of the given node.
_visitChild(ASTPtRootNode, int) - Method in class ptolemy.data.expr.ParseTreeFreeVariableCollector
Visit the child with the given index of the given node.
_visitChild(ASTPtRootNode, int) - Method in class ptolemy.data.expr.ParseTreeFreeVariableRenamer
Visit the child with the given index of the given node.
_visitUnitEquation(UnitEquation) - Method in class ptolemy.moml.unit.EquationVisitor
Visit a UnitEquation by visiting the left and right sides of the equation.
_visitUnitExpr(UnitExpr) - Method in class ptolemy.moml.unit.EquationVisitor
Visit a UnitExpr by visiting the UnitTerms.
_visitUnitTerm(UnitTerm) - Method in class ptolemy.moml.unit.EquationVisitor
Visit a UnitTerm by visiting the UnitExpr if there is one.
_visitUnitTerm(UnitTerm) - Method in class ptolemy.moml.unit.ExpandPortNames
The method that actually does the substitution of a variable with the model name of the port.
_waitingTokens - Variable in class ptolemy.domains.sdf.kernel.SDFReceiver
The number of tokens waiting to be consumed during scheduling.
_warn(String) - Method in class org.kepler.provenance.Recording
Warning output.
_warning(String) - Method in class ptolemy.gui.GraphicalMessageHandler
Show the specified message in a modal dialog.
_warning(String, Throwable) - Method in class ptolemy.gui.GraphicalMessageHandler
Show the specified message and throwable information in a modal dialog.
_warning(String) - Method in class ptolemy.gui.UndeferredGraphicalMessageHandler
Show the specified message in a modal dialog.
_warning(String, Throwable) - Method in class ptolemy.gui.UndeferredGraphicalMessageHandler
Show the specified message and throwable information in a modal dialog.
_warning(String) - Method in class ptolemy.util.MessageHandler
Show the specified message.
_warning(String, Throwable) - Method in class ptolemy.util.MessageHandler
Display the warning message and throwable information.
_warning(String) - Method in class ptolemy.util.SimpleMessageHandler
Show the specified message.
_warning(String, Throwable) - Method in class ptolemy.util.SimpleMessageHandler
Display the warning message and throwable information.
_weight - Variable in class ptolemy.graph.Element
The weight that is associated with the element if the element is weighted.
_wfExecId - Variable in class org.kepler.provenance.sql.SQLRecording
The current workflow execution id.
_wfId - Variable in class org.kepler.provenance.sql.SQLRecording
The current workflow id.
_wfLastExecId - Variable in class org.kepler.provenance.sql.SQLRecordingV8
The most recently completed workflow execution id.
_wfLSID - Variable in class org.kepler.provenance.sql.SQLRecordingV8
The current workflow id.
_wfNameStr - Variable in class org.kepler.provenance.sql.SQLRecording
 
_wfReset() - Method in class org.kepler.provenance.sql.SQLRecording
Reset when we use a different workflow.
_wfReset() - Method in class org.kepler.provenance.sql.SQLRecordingV7
Reset when we use a different workflow.
_wfReset() - Method in class org.kepler.provenance.sql.SQLRecordingV8
Reset when we use a different workflow.
_wfUserStr - Variable in class org.kepler.provenance.sql.SQLRecording
 
_width - Variable in class ptolemy.plot.PlotBox
Width and height of component in pixels.
_widthValue - Variable in class ptolemy.vergil.kernel.attributes.FilledShapeAttribute
Most recently set value of the width parameter.
_windowClosingAdapter - Variable in class ptolemy.actor.gui.AbstractPlaceableActor
A reference to the listener for removal purposes.
_windowClosingAdapter - Variable in class ptolemy.actor.gui.AbstractPlaceableJavaSE
A reference to the listener for removal purposes.
_windowClosingAdapter - Variable in class ptolemy.actor.lib.gui.PlotterBaseJavaSE
A reference to the listener for removal purposes.
_windowClosingAdapter - Variable in class ptolemy.gui.ComponentDialog
A reference to the WindowClosingAdapter.
_windowProperties - Variable in class ptolemy.actor.gui.AbstractPlaceableActor
A specification for the window properties of the frame.
_windowProperties - Variable in class ptolemy.actor.gui.AbstractPlaceableJavaSE
A specification for the window properties of the frame.
_windowProperties - Variable in class ptolemy.actor.lib.gui.PlotterBaseJavaSE
An attribute tha contains the size and position of the window.
_workflow - Variable in class org.kepler.profiling.gui.ExecutionMonitorPanel
The workflow object.
_workflowChangeTimeStack - Variable in class org.kepler.provenance.sql.SQLRecordingV7
Timestamp of current change to workflow structure.
_workspace - Variable in class ptolemy.actor.gui.PtolemyApplet
The workspace that the applet is built in.
_workspace - Variable in class ptolemy.kernel.util.NamedObj
The workspace for this object.
_workspace - Variable in class ptolemy.kernel.util.test.TestWorkspace2
 
_workspace - Variable in class ptolemy.moml.MoMLSimpleApplication
The workspace in which the model and Manager are created.
_wrap - Variable in class ptolemy.plot.PlotBox
Whether to wrap the X axis.
_wrapHigh - Variable in class ptolemy.plot.PlotBox
The high range of the X axis for wrapping.
_wrapLow - Variable in class ptolemy.plot.PlotBox
The low range of the X axis for wrapping.
_wrapReceiver(Receiver, int) - Method in class ptolemy.actor.IOPort
If this port has parameters whose values are tokens that contain an object implementing CommunicationAspect, then wrap the receiver specified in the argument using those communication aspects.
_write(String) - Method in class org.kepler.provenance.TextFileRecording
Output a string.
_write(String, boolean) - Method in class org.kepler.provenance.TextFileRecording
Output a string.
_writeBlockedQueues - Variable in class ptolemy.domains.pn.kernel.PNDirector
The set of receivers blocked on a write to a receiver.
_writeFile(File) - Method in class ptolemy.actor.gui.HTMLViewer
Write the model to the specified file.
_writeFile(File) - Method in class ptolemy.actor.gui.PlotTableauFrame
Write the plot to the specified file in PlotML syntax.
_writeFile(File) - Method in class ptolemy.actor.gui.PtolemyFrame
Write the model to the specified file.
_writeFile(File) - Method in class ptolemy.actor.gui.TableauFrame
Write the model to the specified file.
_writeFile(File) - Method in class ptolemy.gui.test.TopTest
Write the model to the specified file.
_writeFile(File) - Method in class ptolemy.gui.Top
Write the model to the specified file.
_writeFile(File) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Write the model to the specified file.
_writeFile(File) - Method in class ptolemy.vergil.tree.TreeTableau.TreeFrame
Write the model to the specified file.
_writeMessage(String) - Method in class ptolemy.actor.lib.CatchExceptionAttribute
Write the given message to the statusMessage parameter and to the log file, if open.
_writeOldSyntax(PrintWriter) - Method in class ptolemy.plot.Plot
Deprecated. 
_writeOldSyntax(PrintWriter) - Method in class ptolemy.plot.PlotBox
Deprecated. 
_writeOutput(String) - Method in class org.kepler.provenance.TextFileRecording
Output a string, optionally adding a timestamp.
_writeOutput(String, Date) - Method in class org.kepler.provenance.TextFileRecording
Output a string, optionally adding a timestamp.
_writeOutput(String, boolean) - Method in class org.kepler.provenance.TextFileRecording
Output a string, optionally adding a timestamp.
_writeOutput(String, boolean, Date) - Method in class org.kepler.provenance.TextFileRecording
Output a string, optionally adding a timestamp.
_writeOutputs() - Method in class ptolemy.actor.lib.hoc.LifeCycleManager
Iterate over output ports and read any available values from the referenced model parameters and produce them on the outputs.
_writePending - Variable in class ptolemy.domains.pn.kernel.PNQueueReceiver
Reference to a thread that is write blocked on this receiver.
_writer - Variable in class org.kepler.hadoop.actor.HDFSWriter
The current writer.
_writer - Variable in class ptolemy.actor.lib.io.LineWriter
The current writer.
_writer - Variable in class ptolemy.data.expr.ParseTreeWriter
 
_writeSubWorkflowsToFiles - Variable in class org.kepler.ddp.director.DDPEngine
If true, write the sub-workflows to files, otherwise pass them as to in the configuration object.
_writeToFile(KNode) - Static method in class ptolemy.vergil.basic.layout.kieler.KielerGraphUtil
Write a KGraph (KIELER graph data structure) to a file in its XMI representation.
_writeToken(Token) - Method in class org.kepler.actor.io.ArrayOfRecordsWriter
Write the specified token to the current writer.
_writeToken(Token) - Method in class ptolemy.actor.lib.io.CSVWriter
Write the specified token to the current writer.
_writeToken(Token) - Method in class ptolemy.actor.lib.io.ExpressionWriter
Deprecated.
Write the specified token to the current writer using the toString() method of the token, which usually results in an expression that can be read back in using the expression parser.
_writeToken(Token) - Method in class ptolemy.actor.lib.io.LineWriter
Write the specified token to the current writer.
_xBottom - Variable in class ptolemy.plot.PlotBox
The minimum X value registered so for, for auto ranging.
_xhighgiven - Variable in class ptolemy.plot.PlotBox
The given X and Y ranges.
_xInit - Variable in class ptolemy.actor.lib.gui.ArrayPlotter
Start of the X axis counter.
_xInit - Variable in class ptolemy.actor.lib.gui.SequencePlotter
Start of the X axis counter.
_xlog - Variable in class ptolemy.plot.PlotBox
Whether to draw the axes using a logarithmic scale.
_xlowgiven - Variable in class ptolemy.plot.PlotBox
The given X and Y ranges.
_xMax - Variable in class ptolemy.plot.PlotBox
The maximum x value of the range of the data to be plotted.
_xMin - Variable in class ptolemy.plot.PlotBox
The minimum y value of the range of the data to be plotted.
_XOR - Static variable in class ptolemy.actor.lib.logic.LogicFunction
Deprecated.
Perform a logical XOR.
_XOR - Static variable in class ptolemy.actor.lib.logic.LogicGate
Perform a logical XOR.
_xPadding - Variable in class ptolemy.vergil.icon.NameIcon
The horizontal padding on the left and right sides of the name.
_xRangeGiven - Variable in class ptolemy.plot.PlotBox
True if the x range have been given.
_xscale - Variable in class ptolemy.plot.PlotBox
Scaling used for the horizontal axis in plotting points.
_xTop - Variable in class ptolemy.plot.PlotBox
The maximum X value registered so for, for auto ranging.
_xUnit - Variable in class ptolemy.actor.lib.gui.ArrayPlotter
Increment of the X axis counter.
_xUnit - Variable in class ptolemy.actor.lib.gui.SequencePlotter
Increment of the X axis counter.
_xValue - Variable in class ptolemy.actor.lib.gui.SequencePlotter
X axis counter.
_yBottom - Variable in class ptolemy.plot.PlotBox
The minimum Y value registered so for, for auto ranging.
_yesNoCancelQuestion(String, String, String, String) - Method in class ptolemy.gui.GraphicalMessageHandler
Ask the user a question with three possible answers; return true if the answer is the first one and false if the answer is the second one; throw an exception if the user selects the third one.
_yesNoCancelQuestion(String, String, String, String) - Method in class ptolemy.gui.UndeferredGraphicalMessageHandler
Ask the user a question with three possible answers; return true if the answer is the first one and false if the answer is the second one; throw an exception if the user selects the third one.
_yesNoCancelQuestion(String, String, String, String) - Method in class ptolemy.util.MessageHandler
Ask the user a question with three possible answers; return true if the answer is the first one and false if the answer is the second one; throw an exception if the user selects the third one.
_yesNoCancelQuestion(String, String, String, String) - Method in class ptolemy.util.SimpleMessageHandler
Ask the user a question with three possible answers; return true if the answer is the first one and false if the answer is the second one; throw an exception if the user selects the third one.
_yesNoQuestion(String) - Method in class ptolemy.gui.GraphicalMessageHandler
Ask the user a yes/no question, and return true if the answer is yes.
_yesNoQuestion(String) - Method in class ptolemy.gui.UndeferredGraphicalMessageHandler
Ask the user a yes/no question, and return true if the answer is yes.
_yesNoQuestion(String) - Method in class ptolemy.util.MessageHandler
Ask the user a yes/no question, and return true if the answer is yes.
_yesNoQuestion(String) - Method in class ptolemy.util.SimpleMessageHandler
Ask the user a yes/no question, and return true if the answer is yes.
_yhighgiven - Variable in class ptolemy.plot.PlotBox
The given X and Y ranges.
_ylog - Variable in class ptolemy.plot.PlotBox
Whether to draw the axes using a logarithmic scale.
_ylowgiven - Variable in class ptolemy.plot.PlotBox
The given X and Y ranges.
_yMax - Variable in class ptolemy.plot.PlotBox
The maximum y value of the range of the data to be plotted.
_yMin - Variable in class ptolemy.plot.PlotBox
The minimum y value of the range of the data to be plotted.
_yPadding - Variable in class ptolemy.vergil.icon.NameIcon
The vertical padding above and below the name.
_yRangeGiven - Variable in class ptolemy.plot.PlotBox
True if the y range have been given.
_yscale - Variable in class ptolemy.plot.PlotBox
Scaling used for the vertical axis in plotting points.
_yTop - Variable in class ptolemy.plot.PlotBox
The maximum Y value registered so for, for auto ranging.
_zero - Variable in class ptolemy.domains.sdf.lib.FIR
Local cache of the zero token.
_zeroMatrix(Complex[][], int, int) - Static method in class ptolemy.math.ComplexMatrixMath
Place zeroes in specific places of the given matrix.
_zeroTime - Variable in class ptolemy.actor.Director
Time with value 0.0.
_zoom(JGraph, double) - Method in class ptolemy.vergil.basic.BasicGraphFrame
Zoom in or out to magnify by the specified factor, from the current magnification for a specific JGraph.
_zoomFitAction - Variable in class ptolemy.vergil.basic.BasicGraphFrame
Action for zoom fitting.
_zoomFlag - Variable in class ptolemy.vergil.basic.BasicGraphFrame
True if we are inside zoom().
_zoomInAction - Variable in class ptolemy.vergil.basic.BasicGraphFrame
Action for zooming in.
_zoomOutAction - Variable in class ptolemy.vergil.basic.BasicGraphFrame
Action for zooming out.
_zoomResetAction - Variable in class ptolemy.vergil.basic.BasicGraphFrame
Action for zoom reset.
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