org.kepler.sms

Class OntologyCatalog

java.lang.Object

org.kepler.sms.OntologyCatalog

public class OntologyCatalog
extends java.lang.Object

Created by IntelliJ IDEA. User: sean Date: May 20, 2009 Time: 4:55:34 PM

Constructor Summary

Constructors

Modifier	Constructor and Description
protected	OntologyCatalog() Constructor for the OntologyCatalog object
protected	OntologyCatalog(boolean initialize)

Method Summary

Modifier and Type	Method and Description
void	addConcept(java.lang.String conceptName) Adds a concept to the default ontology
void	addConcept(java.lang.String conceptName, java.lang.String conceptLabel) Adds a concept to the default ontology
NamedOntModel	addModel(boolean isInLibrary, java.lang.String label, boolean editable)
void	addModel(NamedOntModel model, boolean isInLibrary)
void	assignSuperConcept(java.lang.String subConceptName, java.lang.String superConceptName) Assigns a concept as a subconcept to a superconcept
NamedOntClass	createClass(NamedOntModel model, java.lang.String name) Add a class with the given name to the ontology
NamedOntClass	createClass(NamedOntModel model, java.lang.String className, NamedOntClass superClass)
org.semanticweb.owl.model.OWLOntology	createDefaultOntology()
java.lang.String	getConceptName(org.semanticweb.owl.model.OWLClass cls)
java.lang.String	getConceptNameWithLabel(java.lang.String label) Returns the first concept in the default onto with the given label
org.semanticweb.owl.model.OWLClass	getConceptWithLabel(java.lang.String label)
org.semanticweb.owl.model.OWLOntology	getDefaultOntology() Returns the default ontology model for the actor library.
java.lang.String	getLabelNameWithConcept(NamedOntClass cls)
java.lang.String	getLabelNameWithConcept(org.semanticweb.owl.model.OWLClass cls)
java.lang.String	getLabelNameWithConcept(org.semanticweb.owl.model.OWLOntology ontology, org.semanticweb.owl.model.OWLClass cls)
java.lang.String	getLabelNameWithConcept(java.lang.String conceptName)
java.util.Iterator<NamedOntModel>	getLibraryNamedOntModels() Provides the set of named ontology models used in the actor library
java.util.Iterator<java.lang.String>	getLibraryOntologyNames() The set of ontology names for use in the catalog
static org.semanticweb.owl.model.OWLOntologyManager	getManager()
NamedOntClass	getNamedOntClass(SemanticType st) Maps semantic types to their NamedOntClass objects.
NamedOntClass	getNamedOntClass(java.lang.String conceptId) Returns class name with the given concept id in the ontologies managed by the catalog.
NamedOntClass	getNamedOntClass(java.lang.String conceptId, boolean libraryClassesOnly) Returns class name with the given concept id in the ontologies managed by the catalog.
NamedOntClass	getNamedOntClass(java.lang.String namespace, java.lang.String localName) Maps namespaces and local names to NamedOntClass objects
NamedOntModel	getNamedOntModel(java.lang.String name) Get the named ontology model with the given name
java.util.Iterator<NamedOntModel>	getNamedOntModels()
java.util.Iterator<NamedOntModel>	getNamedOntModels(boolean libraryOnly) Provides the set of named ontology models
java.util.Vector<NamedOntModel>	getOntModels() Gets the ontModels attribute of the OntologyCatalog object
java.lang.String	getOntologyName(java.lang.String namespace) Maps the namespace of an ontology to the given ontology name
java.util.Iterator<java.lang.String>	getOntologyNames() The set of ontology names in the catalog
java.util.Iterator<NamedOntModel>	getTagBarOntModels()
protected void	initialize()
protected void	initialize(boolean init) Description of the Method
static OntologyCatalog	instance()
static OntologyCatalog	instanceNoInitialize()
static void	main(java.lang.String[] args) The main program for the OntologyCatalog class
void	removeConcept(NamedOntClass ontClass)
void	saveCatalog() Save out catalog to catalog filename
void	saveCatalog(java.util.Vector<OntologyRow> rows)
void	setInLibrary(NamedOntModel model, boolean isInLibrary)
void	setInTagBar(NamedOntModel model, boolean isInTagBar)
static OntologyCatalog	standaloneInstance()
void	write()
protected void	writeDefaultModel() Description of the Method

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

OntologyCatalog

protected OntologyCatalog(boolean initialize)

OntologyCatalog

protected OntologyCatalog()

Constructor for the OntologyCatalog object

Method Detail

standaloneInstance

public static OntologyCatalog standaloneInstance()

instance

public static OntologyCatalog instance()

Returns:

The unique instance of this class This must be called to create/obtain an instance of the catalog

instanceNoInitialize

public static OntologyCatalog instanceNoInitialize()

getDefaultOntology

public org.semanticweb.owl.model.OWLOntology getDefaultOntology()

Returns the default ontology model for the actor library.

Returns:

The defaultOntology value

createDefaultOntology

public org.semanticweb.owl.model.OWLOntology createDefaultOntology()

getOntModels

public java.util.Vector<NamedOntModel> getOntModels()

Gets the ontModels attribute of the OntologyCatalog object

Returns:

The ontModels value

getNamedOntModel

public NamedOntModel getNamedOntModel(java.lang.String name)

Get the named ontology model with the given name

Parameters:

name - the ontology name

Returns:

the NamedOntModel if it exists

getConceptNameWithLabel

public java.lang.String getConceptNameWithLabel(java.lang.String label)

Returns the first concept in the default onto with the given label

Parameters:

label - Description of the Parameter

Returns:

The conceptNameWithLabel value

getConceptName

public java.lang.String getConceptName(org.semanticweb.owl.model.OWLClass cls)

getLabelNameWithConcept

public java.lang.String getLabelNameWithConcept(java.lang.String conceptName)

getLabelNameWithConcept

public java.lang.String getLabelNameWithConcept(NamedOntClass cls)

getLabelNameWithConcept

public java.lang.String getLabelNameWithConcept(org.semanticweb.owl.model.OWLOntology ontology,
                                                org.semanticweb.owl.model.OWLClass cls)

getLabelNameWithConcept

public java.lang.String getLabelNameWithConcept(org.semanticweb.owl.model.OWLClass cls)

createClass

public NamedOntClass createClass(NamedOntModel model,
                                 java.lang.String name)

Add a class with the given name to the ontology

Parameters:

model - the NamedOntModel to create the class in

name - the name of the class

Returns:

the NamedOntModel

createClass

public NamedOntClass createClass(NamedOntModel model,
                                 java.lang.String className,
                                 NamedOntClass superClass)

addConcept

public void addConcept(java.lang.String conceptName)

Adds a concept to the default ontology

Parameters:

conceptName - The feature to be added to the Concept attribute

addConcept

public void addConcept(java.lang.String conceptName,
                       java.lang.String conceptLabel)

Adds a concept to the default ontology

Parameters:

conceptName - The feature to be added to the Concept attribute

conceptLabel - The feature to be added to the Concept attribute

removeConcept

public void removeConcept(NamedOntClass ontClass)

assignSuperConcept

public void assignSuperConcept(java.lang.String subConceptName,
                               java.lang.String superConceptName)

Assigns a concept as a subconcept to a superconcept

Parameters:

subConceptName - Description of the Parameter

superConceptName - Description of the Parameter

write

public void write()

writeDefaultModel

protected void writeDefaultModel()

Description of the Method

initialize

protected void initialize()

initialize

protected void initialize(boolean init)

Description of the Method

main

public static void main(java.lang.String[] args)

The main program for the OntologyCatalog class

Parameters:

args - The command line arguments

setInLibrary

public void setInLibrary(NamedOntModel model,
                         boolean isInLibrary)

setInTagBar

public void setInTagBar(NamedOntModel model,
                        boolean isInTagBar)

saveCatalog

public void saveCatalog()

Save out catalog to catalog filename

saveCatalog

public void saveCatalog(java.util.Vector<OntologyRow> rows)

addModel

public NamedOntModel addModel(boolean isInLibrary,
                              java.lang.String label,
                              boolean editable)

addModel

public void addModel(NamedOntModel model,
                     boolean isInLibrary)

getNamedOntModels

public java.util.Iterator<NamedOntModel> getNamedOntModels()

getNamedOntModels

public java.util.Iterator<NamedOntModel> getNamedOntModels(boolean libraryOnly)

Provides the set of named ontology models

Parameters:

libraryOnly - if true, return only the library models

Returns:

the set of named ontology models in the catalog

getLibraryNamedOntModels

public java.util.Iterator<NamedOntModel> getLibraryNamedOntModels()

Provides the set of named ontology models used in the actor library

Returns:

the unique instance of this class

getTagBarOntModels

public java.util.Iterator<NamedOntModel> getTagBarOntModels()

getOntologyNames

public java.util.Iterator<java.lang.String> getOntologyNames()

The set of ontology names in the catalog

Returns:

The set of names for ontologies

getLibraryOntologyNames

public java.util.Iterator<java.lang.String> getLibraryOntologyNames()

The set of ontology names for use in the catalog

Returns:

The libraryOntologyNames value

getOntologyName

public java.lang.String getOntologyName(java.lang.String namespace)

Maps the namespace of an ontology to the given ontology name

Parameters:

namespace - the namespace of the desired ontology

Returns:

the name of the ontology for the given namespace. The namespace can optionally end in #

getNamedOntClass

public NamedOntClass getNamedOntClass(SemanticType st)

Maps semantic types to their NamedOntClass objects. Tries to optimize the search assuming '#' is used to distinguish namespaces from local names.

Parameters:

st - the semantic type to search for

Returns:

the named ontology class for the given semantic type or null if none exists.

getNamedOntClass

public NamedOntClass getNamedOntClass(java.lang.String namespace,
                                      java.lang.String localName)

Maps namespaces and local names to NamedOntClass objects

Parameters:

namespace - the namespace of the class

localName - the local name (id) of the class within the namespace

Returns:

the named ontology class for the given semantic type or null if none exists.

getNamedOntClass

public NamedOntClass getNamedOntClass(java.lang.String conceptId,
                                      boolean libraryClassesOnly)

Returns class name with the given concept id in the ontologies managed by the catalog.

Parameters:

conceptId - complete name of class (with namespace)

libraryClassesOnly - if true, search only those classes in one of the library ontologies

Returns:

The named ontology class for the given concept id (local name plus namespace), or null if no such class exist

getNamedOntClass

public NamedOntClass getNamedOntClass(java.lang.String conceptId)

Returns class name with the given concept id in the ontologies managed by the catalog.

Parameters:

conceptId - complete name of class (with namespace)

Returns:

The named ontology class for the given concept id (local name plus namespace), or null if no such class exist

getManager

public static org.semanticweb.owl.model.OWLOntologyManager getManager()

getConceptWithLabel

public org.semanticweb.owl.model.OWLClass getConceptWithLabel(java.lang.String label)