org.sdm.spa.actors.piw.viz

Class SiteCollection

java.lang.Object

org.sdm.spa.actors.piw.viz.SiteCollection

public class SiteCollection
extends java.lang.Object

Author:

xiaowen

Constructor Summary

Constructors

Constructor and Description
SiteCollection(SequenceCollection sequenceCollection)

Method Summary

Modifier and Type	Method and Description
void	deselectSitesWithOverallFrequencyUnder(double frequency)
void	deselectSitesWithPerSequenceFrequencyUnder(double frequency)
double	getMaxFrequencyOverall()
double	getMaxFrequencyPerSequence()
org.sdm.spa.actors.piw.viz.SiteCollection.Site	getSite(int index)
org.sdm.spa.actors.piw.viz.SiteCollection.Site	getSite(java.lang.String name)
void	selectAll()
int	size()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SiteCollection

public SiteCollection(SequenceCollection sequenceCollection)

Method Detail

size

public int size()

getSite

public org.sdm.spa.actors.piw.viz.SiteCollection.Site getSite(int index)

getSite

public org.sdm.spa.actors.piw.viz.SiteCollection.Site getSite(java.lang.String name)

getMaxFrequencyOverall

public double getMaxFrequencyOverall()

getMaxFrequencyPerSequence

public double getMaxFrequencyPerSequence()

selectAll

public void selectAll()

deselectSitesWithOverallFrequencyUnder

public void deselectSitesWithOverallFrequencyUnder(double frequency)

deselectSitesWithPerSequenceFrequencyUnder

public void deselectSitesWithPerSequenceFrequencyUnder(double frequency)