org.kepler.util

Class WorkflowRunUtil

java.lang.Object

org.kepler.util.WorkflowRunUtil

public class WorkflowRunUtil
extends java.lang.Object

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	KARENTRY_PROPERTY
static java.lang.String	KARENTRY_PROPERTY_AT_VALUE
static java.lang.String	KARENTRY_PROPERTY_NAME
static java.lang.String	KARENTRY_PROPERTY_PROPERTY
static java.lang.String	KARENTRY_PROPERTY_PROPERTY_AT_NAME
static java.lang.String	KARENTRY_PROPERTY_PROPERTY_PROPERTY
static java.lang.String	KARENTRY_SUBPROPERTY_NAME
static java.lang.String	KARENTRY_SUBPROPERTY_VALUE
static java.lang.String	KARENTRY_TYPE
static java.lang.String	KARENTRY_WORKFLOWRUN_ANNOTATION
static java.lang.String	KARENTRY_WORKFLOWRUN_DERIVEDFROM
static java.lang.String	KARENTRY_WORKFLOWRUN_DURATION
static java.lang.String	KARENTRY_WORKFLOWRUN_ENTITYID
static java.lang.String	KARENTRY_WORKFLOWRUN_ERRORMESSAGES
static java.lang.String	KARENTRY_WORKFLOWRUN_EXECID
static java.lang.String	KARENTRY_WORKFLOWRUN_EXECLSID
static java.lang.String	KARENTRY_WORKFLOWRUN_HOSTID
static java.lang.String	KARENTRY_WORKFLOWRUN_MODULEDEPENDENCIES
static java.lang.String	KARENTRY_WORKFLOWRUN_STARTTIME
static java.lang.String	KARENTRY_WORKFLOWRUN_SUBPROPERTY_ERROR
static java.lang.String	KARENTRY_WORKFLOWRUN_SUBPROPERTY_WORKFLOW_TAG
static java.lang.String	KARENTRY_WORKFLOWRUN_TAG
static java.lang.String	KARENTRY_WORKFLOWRUN_TYPE
static java.lang.String	KARENTRY_WORKFLOWRUN_USER
static java.lang.String	KARENTRY_WORKFLOWRUN_WORKFLOWLSID
static java.lang.String	KARENTRY_WORKFLOWRUN_WORKFLOWNAME
static java.lang.String	KARENTRY_WORKFLOWRUN_WORKFLOWTAGS
static java.lang.String	KARFILENAME
static java.lang.String	KARFILESIZE
static java.lang.String	KARLSID

Constructor Summary

Constructors

Constructor and Description
WorkflowRunUtil()

Method Summary

Modifier and Type	Method and Description
static java.io.Reader	buildRunKARQueryDoc() Deprecated.
static java.io.Reader	buildWorkflowRunPiecesQueryDoc() Create query document that for all karXmls that contain a WorkflowRun, will return KAR filename, KAR LSID, KAR filesize, karEntry types, and a subset of properties that includes all WorkflowRun properties.
static java.io.Reader	buildWorkflowRunQueryDocO() Deprecated. unused.
static java.lang.String	formatDateToISO8601(java.util.Date date)
static java.util.Date	formatStringFromISO8601(java.lang.String dateStr)
static WorkflowRun	lookupWorkflowRun(KeplerLSID workflowRunLSID, Queryable queryable)
static void	putInObjectManager(WorkflowRun run) Put run in ObjectManager, removing any previous version.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

KARENTRY_TYPE

public static final java.lang.String KARENTRY_TYPE

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Constant Field Values

KARENTRY_PROPERTY

public static final java.lang.String KARENTRY_PROPERTY

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Constant Field Values

KARENTRY_PROPERTY_PROPERTY

public static final java.lang.String KARENTRY_PROPERTY_PROPERTY

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Constant Field Values

KARENTRY_PROPERTY_PROPERTY_PROPERTY

public static final java.lang.String KARENTRY_PROPERTY_PROPERTY_PROPERTY

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Constant Field Values

KARENTRY_PROPERTY_PROPERTY_AT_NAME

public static final java.lang.String KARENTRY_PROPERTY_PROPERTY_AT_NAME

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Constant Field Values

KARENTRY_PROPERTY_NAME

public static final java.lang.String KARENTRY_PROPERTY_NAME

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Constant Field Values

KARENTRY_PROPERTY_AT_VALUE

public static final java.lang.String KARENTRY_PROPERTY_AT_VALUE

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Constant Field Values

KARENTRY_SUBPROPERTY_NAME

public static final java.lang.String KARENTRY_SUBPROPERTY_NAME

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Constant Field Values

KARENTRY_SUBPROPERTY_VALUE

public static final java.lang.String KARENTRY_SUBPROPERTY_VALUE

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Constant Field Values

KARENTRY_WORKFLOWRUN_DERIVEDFROM

public static final java.lang.String KARENTRY_WORKFLOWRUN_DERIVEDFROM

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Constant Field Values

KARENTRY_WORKFLOWRUN_USER

public static final java.lang.String KARENTRY_WORKFLOWRUN_USER

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Constant Field Values

KARENTRY_WORKFLOWRUN_WORKFLOWNAME

public static final java.lang.String KARENTRY_WORKFLOWRUN_WORKFLOWNAME

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Constant Field Values

KARENTRY_WORKFLOWRUN_WORKFLOWLSID

public static final java.lang.String KARENTRY_WORKFLOWRUN_WORKFLOWLSID

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Constant Field Values

KARENTRY_WORKFLOWRUN_STARTTIME

public static final java.lang.String KARENTRY_WORKFLOWRUN_STARTTIME

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Constant Field Values

KARENTRY_WORKFLOWRUN_DURATION

public static final java.lang.String KARENTRY_WORKFLOWRUN_DURATION

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Constant Field Values

KARENTRY_WORKFLOWRUN_EXECID

public static final java.lang.String KARENTRY_WORKFLOWRUN_EXECID

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Constant Field Values

KARENTRY_WORKFLOWRUN_EXECLSID

public static final java.lang.String KARENTRY_WORKFLOWRUN_EXECLSID

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Constant Field Values

KARENTRY_WORKFLOWRUN_ERRORMESSAGES

public static final java.lang.String KARENTRY_WORKFLOWRUN_ERRORMESSAGES

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Constant Field Values

KARENTRY_WORKFLOWRUN_HOSTID

public static final java.lang.String KARENTRY_WORKFLOWRUN_HOSTID

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Constant Field Values

KARENTRY_WORKFLOWRUN_ANNOTATION

public static final java.lang.String KARENTRY_WORKFLOWRUN_ANNOTATION

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Constant Field Values

KARENTRY_WORKFLOWRUN_MODULEDEPENDENCIES

public static final java.lang.String KARENTRY_WORKFLOWRUN_MODULEDEPENDENCIES

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Constant Field Values

KARENTRY_WORKFLOWRUN_TYPE

public static final java.lang.String KARENTRY_WORKFLOWRUN_TYPE

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Constant Field Values

KARENTRY_WORKFLOWRUN_ENTITYID

public static final java.lang.String KARENTRY_WORKFLOWRUN_ENTITYID

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Constant Field Values

KARENTRY_WORKFLOWRUN_WORKFLOWTAGS

public static final java.lang.String KARENTRY_WORKFLOWRUN_WORKFLOWTAGS

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Constant Field Values

KARENTRY_WORKFLOWRUN_TAG

public static final java.lang.String KARENTRY_WORKFLOWRUN_TAG

KARENTRY_WORKFLOWRUN_SUBPROPERTY_ERROR

public static final java.lang.String KARENTRY_WORKFLOWRUN_SUBPROPERTY_ERROR

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Constant Field Values

KARENTRY_WORKFLOWRUN_SUBPROPERTY_WORKFLOW_TAG

public static final java.lang.String KARENTRY_WORKFLOWRUN_SUBPROPERTY_WORKFLOW_TAG

KARLSID

public static final java.lang.String KARLSID

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Constant Field Values

KARFILENAME

public static final java.lang.String KARFILENAME

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Constant Field Values

KARFILESIZE

public static final java.lang.String KARFILESIZE

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Constant Field Values

Constructor Detail

WorkflowRunUtil

public WorkflowRunUtil()

Method Detail

putInObjectManager

public static void putInObjectManager(WorkflowRun run)

Put run in ObjectManager, removing any previous version.

Parameters:

run -

lookupWorkflowRun

public static WorkflowRun lookupWorkflowRun(KeplerLSID workflowRunLSID,
                                            Queryable queryable)
                                     throws java.lang.Exception

Throws:

java.lang.Exception

formatDateToISO8601

public static java.lang.String formatDateToISO8601(java.util.Date date)

formatStringFromISO8601

public static java.util.Date formatStringFromISO8601(java.lang.String dateStr)
                                              throws java.lang.Exception

Throws:

java.lang.Exception

buildRunKARQueryDoc

public static java.io.Reader buildRunKARQueryDoc()

Deprecated.

Build a query - for all karXmls that contain a WorkflowRun, return karFileName, the KAR's lsid, and karFileSize.

Returns:

StringReader containing query

buildWorkflowRunPiecesQueryDoc

public static java.io.Reader buildWorkflowRunPiecesQueryDoc()

Create query document that for all karXmls that contain a WorkflowRun, will return KAR filename, KAR LSID, KAR filesize, karEntry types, and a subset of properties that includes all WorkflowRun properties.

Returns:

Reader containing aforementioned query document.

buildWorkflowRunQueryDocO

public static java.io.Reader buildWorkflowRunQueryDocO()

Deprecated. unused.

Build a query - get docIds for all karXmls that contain a WorkflowRun

Returns:

StringReader