Uses of Class
org.kepler.sms.NamedOntClass

Packages that use NamedOntClass

Package	Description
org.kepler.provenance
org.kepler.provenance.sql
org.kepler.sms
org.kepler.sms.gui
org.kepler.tagging
org.kepler.tagging.gui
org.kepler.util

Uses of NamedOntClass in org.kepler.provenance

Methods in org.kepler.provenance that return types with arguments of type NamedOntClass

Modifier and Type	Method and Description
java.util.Map<NamedOntClass,java.lang.String>	DefaultQuery.getTagClassesForExecutionId(int execId)
java.util.Map<NamedOntClass,java.lang.String>	Queryable.getTagClassesForExecutionId(int execId) Get a map of tags and their types (context, or tagee, currently "run" or "workflow") for an executionLSID

Uses of NamedOntClass in org.kepler.provenance.sql

Methods in org.kepler.provenance.sql that return types with arguments of type NamedOntClass

Modifier and Type	Method and Description
java.util.Map<NamedOntClass,java.lang.String>	SQLQueryV8.getTagClassesForExecutionId(int execId)

Uses of NamedOntClass in org.kepler.sms

Methods in org.kepler.sms that return NamedOntClass

Modifier and Type	Method and Description
NamedOntClass	OntologyCatalog.createClass(NamedOntModel model, java.lang.String name) Add a class with the given name to the ontology
NamedOntClass	OntologyCatalog.createClass(NamedOntModel model, java.lang.String className, NamedOntClass superClass)
static NamedOntClass	NamedOntClass.createNamedOntClassFromURI(java.lang.String tagURIString)
static NamedOntClass	NamedOntClass.createNamedOntClassFromURIs(java.lang.String tagURIString, java.lang.String ontologyURIString)
NamedOntClass	NamedOntModel.getNamedClass(java.lang.String name)
NamedOntClass	OntologyCatalog.getNamedOntClass(SemanticType st) Maps semantic types to their NamedOntClass objects.
NamedOntClass	OntologyCatalog.getNamedOntClass(java.lang.String conceptId) Returns class name with the given concept id in the ontologies managed by the catalog.
NamedOntClass	OntologyCatalog.getNamedOntClass(java.lang.String conceptId, boolean libraryClassesOnly) Returns class name with the given concept id in the ontologies managed by the catalog.
NamedOntClass	OntologyCatalog.getNamedOntClass(java.lang.String namespace, java.lang.String localName) Maps namespaces and local names to NamedOntClass objects
static NamedOntClass	SMSServices.getNamedOntClassFor(SemanticType semtype)
static NamedOntClass	SMSServices.getNamedOntClassFor(java.lang.String conceptId)
NamedOntClass	NamedOntClass.getThisClass()

Methods in org.kepler.sms that return types with arguments of type NamedOntClass

Modifier and Type	Method and Description
java.util.Iterator<NamedOntClass>	NamedOntModel.getNamedClasses() gets a list of the named classes in the ontology
java.util.Iterator<NamedOntClass>	NamedOntClass.getNamedSubClasses(boolean sorted)
java.util.Iterator<NamedOntClass>	NamedOntClass.getNamedSuperClasses(boolean sorted)
java.util.Iterator<NamedOntClass>	NamedOntModel.getRootClasses(boolean sorted)
java.util.Vector<NamedOntClass>	SemanticTypeManager.getTypesAsNamedOntClasses(java.lang.Object obj)

Methods in org.kepler.sms with parameters of type NamedOntClass

Modifier and Type	Method and Description
NamedOntClass	OntologyCatalog.createClass(NamedOntModel model, java.lang.String className, NamedOntClass superClass)
java.lang.String	OntologyCatalog.getLabelNameWithConcept(NamedOntClass cls)
boolean	NamedOntClass.isDisjointWith(NamedOntClass cls)
boolean	NamedOntClass.isEquivalent(NamedOntClass cls)
boolean	NamedOntClass.isSubClass(NamedOntClass cls)
void	OntologyCatalog.removeConcept(NamedOntClass ontClass)

Method parameters in org.kepler.sms with type arguments of type NamedOntClass

Modifier and Type	Method and Description
static void	SMSServices.setActorSemanticTypes(NamedObj obj, java.util.Vector<NamedOntClass> namedOntClasses) Set given NamedObj's SemanticTypes to namedOntClasses
void	SMSTagChangeListener.tagsChanged(NamedObj object, java.util.List<NamedOntClass> added, java.util.List<NamedOntClass> removed)
void	SMSTagChangeListener.tagsChanged(NamedObj object, java.util.List<NamedOntClass> added, java.util.List<NamedOntClass> removed)

Constructors in org.kepler.sms with parameters of type NamedOntClass

Constructor and Description
NamedOntClass(NamedOntClass noc)

Uses of NamedOntClass in org.kepler.sms.gui

Methods in org.kepler.sms.gui that return NamedOntClass

Modifier and Type	Method and Description
protected NamedOntClass	OntoClassSearchDialog.getChoice()
NamedOntClass	SemanticTypeBrowserSelectionEvent.getOntClass()
static NamedOntClass	OntoClassSearchDialog.showDialog(java.awt.Frame aFrame, java.util.Vector choices)

Methods in org.kepler.sms.gui that return types with arguments of type NamedOntClass

Modifier and Type	Method and Description
java.util.Vector<NamedOntClass>	OntoClassSelectionJPanel.getNamedOntClasses() Provides access to the selected ontology classes

Methods in org.kepler.sms.gui with parameters of type NamedOntClass

Modifier and Type	Method and Description
void	OntoClassSelectionJPanel.addNamedOntClass(NamedOntClass ontClass) adds the given NamedOntClass objects to the panel.
void	NamedOntClassTransferable.addObject(NamedOntClass object) Add the given named object to the objects contained in this transferable.
void	NamedOntClassTransferable.removeObject(NamedOntClass object) Remove the given object from this transferable.

Constructors in org.kepler.sms.gui with parameters of type NamedOntClass

Constructor and Description
SemanticTypeBrowserSelectionEvent(java.lang.Object source, NamedOntClass cls) creates a new event

Uses of NamedOntClass in org.kepler.tagging

Fields in org.kepler.tagging declared as NamedOntClass

Modifier and Type	Field and Description
protected NamedOntClass	TagReloadType.tag

Methods in org.kepler.tagging that return NamedOntClass

Modifier and Type	Method and Description
NamedOntClass	TagEvent.getTag()
NamedOntClass	TagReloadType.getTag()

Methods in org.kepler.tagging that return types with arguments of type NamedOntClass

Modifier and Type	Method and Description
static java.util.Set<NamedOntClass>	Tagging.getTags(java.util.Collection<NamedObj> objs)
static java.util.Set<NamedOntClass>	Tagging.getTags(NamedObj obj) Get the tags for a given named object

Methods in org.kepler.tagging with parameters of type NamedOntClass

Modifier and Type	Method and Description
static boolean	Tagging.addTag(NamedObj obj, NamedOntClass tag, PtolemyFrame ptolemyFrame) Add a tag to the named object
void	TagCache.addToCache(NamedOntClass cls)
static TagReloadType	TagReloadType.createInteractiveTagAddedChange(NamedOntClass cls, NamedObj target)
static TagReloadType	TagReloadType.createNewOrDeleteChange(NamedOntClass newOntClass, boolean newTag)
static TagReloadType	TagReloadType.createTagAddedChange(NamedOntClass cls, NamedObj target)
static TagReloadType	TagReloadType.createTagRemovedChange(NamedOntClass cls, NamedObj target)
static java.util.Set<NamedObj>	Tagging.findNamedObjects(NamedOntClass type) Search for and return named objects with the given type TODO: extend to support subclass checking
void	TagCache.removeFromCache(NamedOntClass ontClass)
static void	Tagging.removeTag(NamedObj obj, NamedOntClass tag, boolean lastEvent) Remove a tag from the named object object
static void	Tagging.removeTag(NamedObj obj, NamedOntClass tag, java.util.List<TagEventListener> listeners, boolean lastEvent)
void	TagEvent.setTag(NamedOntClass tag)

Method parameters in org.kepler.tagging with type arguments of type NamedOntClass

Modifier and Type	Method and Description
static java.util.List<TagReloadType>	TagReloadType.createExternalChanges(NamedObj target, java.util.List<NamedOntClass> added, java.util.List<NamedOntClass> removed)
static java.util.List<TagReloadType>	TagReloadType.createExternalChanges(NamedObj target, java.util.List<NamedOntClass> added, java.util.List<NamedOntClass> removed)
static java.util.Set<NamedObj>	Tagging.findNamedObjects(java.util.Set<NamedOntClass> types) Search for and return named objects with one or more of the given types TODO: extend to support subclass checking

Constructors in org.kepler.tagging with parameters of type NamedOntClass

Constructor and Description
TagEvent(NamedObj obj, NamedOntClass tag, boolean lastEvent)

Uses of NamedOntClass in org.kepler.tagging.gui

Subclasses of NamedOntClass in org.kepler.tagging.gui

Modifier and Type	Class and Description
static class	CBItems.TruncatedNamedOntClass

Fields in org.kepler.tagging.gui declared as NamedOntClass

Modifier and Type	Field and Description
protected NamedOntClass	CBItems.ExistingConceptCBItem.cls

Methods in org.kepler.tagging.gui that return NamedOntClass

Modifier and Type	Method and Description
abstract NamedOntClass	CBItems.ConceptCBItem.asTag()
NamedOntClass	CBItems.AddConceptCBItem.asTag()
NamedOntClass	CBItems.TruncatedExistingConceptCBItem.asTag()
NamedOntClass	CBItems.ExistingConceptCBItem.asTag()
NamedOntClass	CBItems.ExistingConceptCBItem.getCls()
NamedOntClass	CBItems.TruncatedNamedOntClass.getThisClass()

Methods in org.kepler.tagging.gui that return types with arguments of type NamedOntClass

Modifier and Type	Method and Description
java.util.Set<NamedOntClass>	ExistingTagsPanel.getClasses()

Methods in org.kepler.tagging.gui with parameters of type NamedOntClass

Modifier and Type	Method and Description
void	ExistingTagsPanel.addLabelToBar(NamedOntClass cls)
void	ExistingTagsPanel.addTag(NamedOntClass cls)
void	ExistingTagsPanel.addTag(NamedOntClass cls, java.util.Collection<NamedObj> objects)
void	ExistingTagsPanel.addTag(NamedOntClass cls, NamedObj object)
boolean	ExistingTagsPanel.hasTag(NamedOntClass cls)
void	ExistingTagsPanel.informListeners(NamedOntClass cls, NamedObj object, boolean notifyListeners, boolean lastEvent)
void	ExistingTagsPanel.removeLabel(NamedOntClass cls)
void	ExistingTagsPanel.removeTag(NamedOntClass cls, boolean verbose)
void	ExistingTagsPanel.saveTag(NamedOntClass cls, boolean notifyListeners)

Constructors in org.kepler.tagging.gui with parameters of type NamedOntClass

Constructor and Description
ExistingConceptCBItem(OntologyCatalog catalog, NamedOntClass cls)
TruncatedExistingConceptCBItem(OntologyCatalog catalog, NamedOntClass cls)
TruncatedNamedOntClass(NamedOntClass cls)

Uses of NamedOntClass in org.kepler.util

Methods in org.kepler.util that return types with arguments of type NamedOntClass

Modifier and Type	Method and Description
java.util.Map<NamedOntClass,java.lang.String>	WorkflowRun.getTags()

Constructor parameters in org.kepler.util with type arguments of type NamedOntClass

Constructor and Description

WorkflowRun(KeplerLSID runlsid, java.lang.String referralList, java.lang.String theUser, java.lang.String workflowName, KeplerLSID wfLSID, java.util.Date start, java.lang.Long dur, java.lang.Integer execid, java.util.Map<java.lang.Integer,java.lang.String> errorMsgs, java.lang.String host_id, java.lang.String anno, java.lang.String module_dependencies, java.lang.String type, java.util.Map<NamedOntClass,java.lang.String> tagsList) Constructor.