| Package | Description |
|---|---|
| org.kepler.authentication | |
| org.kepler.gui | |
| org.kepler.objectmanager.repository | |
| org.kepler.util | |
| org.kepler.workflowrunmanager | |
| org.kepler.workflowrunmanager.gui |
| Modifier and Type | Method and Description |
|---|---|
void |
AuthenticationManager.addProxyEntity(ProxyEntity pentity)
adds a proxyEntity to the entity repository if it was authenticated
outside of the AuthManager.
|
abstract ProxyEntity |
AuthenticationService.authenticate(Domain domain)
Authenticate a user
|
ProxyEntity |
GAMAAuthenticationService.authenticate(Domain d)
Use the GAMA authentication service to get credential returns null if the
user cancels the action.
|
ProxyEntity |
LDAPAuthenticationService.authenticate(Domain d)
Use LDAP to authenticate the user
|
ProxyEntity |
LDAPAuthenticationService.authenticate(Domain d,
java.lang.String dn,
java.lang.String password)
this method authenticates using a full dn instead of breaking it into
username and org
|
ProxyEntity |
LDAPAuthenticationService.authenticate(Domain d,
java.lang.String username,
java.lang.String password,
java.lang.String org)
this method authenticates without creating a gui popup window for the
user.
|
AuthenticationService |
AuthenticationManager.getAuthenticationService(java.lang.String domainName)
return an AuthenticationService for the given domain name
|
static Domain |
AuthenticationManager.getDomain(java.lang.String domainName)
returns a Domain for a given domainName
|
ProxyEntity |
AuthenticationManager.getProxy(java.lang.String domainName)
This function retrieves back the user proxy within specified domain,
adding ProxyEntity to AuthenticationManager's proxyRepository in the
process.
|
boolean |
AuthenticationService.isAuthenticated()
Note, currently unused, and authenticate(null) will cause NPE.
|
ProxyEntity |
AuthenticationManager.peekProxy(java.lang.String domainName) |
void |
AuthenticationManager.revokeProxy(ProxyEntity entity) |
abstract void |
AuthenticationService.unauthenticate(ProxyEntity proxy)
Unauthenticate a user
|
void |
GAMAAuthenticationService.unauthenticate(ProxyEntity pentity) |
void |
LDAPAuthenticationService.unauthenticate(ProxyEntity pentity) |
| Modifier and Type | Method and Description |
|---|---|
LibrarySearchResults |
SimpleLibrarySearcher.search(java.lang.String value,
boolean authenticate)
search for val in the library
|
LibrarySearchResults |
RepositorySearcher.search(java.lang.String value,
boolean authenticate) |
abstract LibrarySearchResults |
LibrarySearcher.search(java.lang.String value,
boolean authenticate)
search for value in the library
|
| Modifier and Type | Method and Description |
|---|---|
java.util.Iterator<EcogridRepositoryResults> |
EcogridRepository.advancedSearch(java.io.Reader queryDocument,
boolean authenticate)
Search the repository and return an iterator of EcogridRepositoryResults.
|
org.ecoinformatics.ecogrid.queryservice.resultset.ResultsetType |
EcogridRepository.arbitrarySearch(java.io.Reader queryDocument,
boolean authenticate)
Search the repository using queryDocument.
|
abstract java.io.InputStream |
Repository.get(KeplerLSID lsid,
boolean authenticate)
return the object from the repository that has the given lsid
|
java.io.InputStream |
EcogridRepository.get(KeplerLSID lsid,
boolean authenticate)
return the object from the repository that has the given lsid
|
abstract java.io.InputStream |
Repository.get(java.lang.String id,
boolean authenticate)
get method with a string id
|
java.io.InputStream |
EcogridRepository.get(java.lang.String docid,
boolean authenticate)
return an object using a ecogrid docid identifier
|
abstract java.util.Iterator |
Repository.search(java.lang.String queryString,
boolean authenticate)
Search the repository and return an iterator of results (the Iterator
contains KeplerLSIDs of matched items).
|
LibrarySearchResults |
EcogridRepositoryLibrarySearcher.search(java.lang.String value,
boolean authenticate)
search for value in the library
|
java.util.Iterator<EcogridRepositoryResults> |
EcogridRepository.search(java.lang.String queryString,
boolean authenticate)
Search the repository and return an iterator of EcogridRepositoryResults.
|
| Modifier and Type | Method and Description |
|---|---|
void |
ProvenanceStore.downloadAllRunKARs(boolean authenticate)
Deprecated.
works fine, but probably better to download
KARs using the info found in the tracker file
queries.
|
java.util.List<WorkflowRunBuilder> |
ProvenanceStore.downloadAllWorkflowRuns(boolean authenticate)
Download all components of WorkflowRuns (and KAR attributes necessary to download the KAR)
found within KARs on the Ecogrid into WorkflowRunBuilders, from which you may attempt to
construct WorkflowRuns.
|
java.util.Map<KeplerLSID,WorkflowRun> |
ProvenanceStore.downloadAllWorkflowRunsParsingKarXmls(boolean authenticate)
Deprecated.
use downloadAllWorkflowRuns instead. This method is less fragile
but requires downloading all karXmls, which is extremely inefficient.
|
| Modifier and Type | Method and Description |
|---|---|
int |
WorkflowRunManager.deleteRuns(Recording recording,
java.util.List<KeplerLSID> lsids,
boolean authenticate)
Delete runs in provenance and from local list.
|
boolean |
WorkflowRunManager.downloadRunKAR(KeplerLSID previewRunLSID,
boolean authenticate)
Download run KAR using the LSID of the preview run stand-in.
|
java.util.ArrayList<WorkflowRun> |
WorkflowRunManager.queryForAndSetRuns(java.lang.String workflowNameSearchString,
java.lang.String userNameSearchString,
java.lang.String startTimeSearchString,
java.lang.String durationSearchString,
java.lang.String execIdSearchString,
java.lang.String tagSearchString,
boolean authenticate) |
| Modifier and Type | Method and Description |
|---|---|
void |
WorkflowRunManagerTableModel.updateDataUsingWRMQuery(java.lang.String workflowName,
java.lang.String userName,
java.lang.String startTimeSearchString,
java.lang.String durationSearchString,
java.lang.String execIdSearchString,
java.lang.String tagSearchString,
boolean authenticate) |