Class AbstractParticleFilter
- java.lang.Object
-
- ptolemy.kernel.util.NamedObj
-
- ptolemy.kernel.InstantiableNamedObj
-
- ptolemy.kernel.Entity<T>
-
- ptolemy.kernel.ComponentEntity
-
- ptolemy.kernel.CompositeEntity
-
- ptolemy.actor.CompositeActor
-
- ptolemy.actor.TypedCompositeActor
-
- org.ptolemy.machineLearning.particleFilter.AbstractParticleFilter
-
- All Implemented Interfaces:
java.lang.Cloneable,MapConstrained,Actor,Executable,FiringsRecordable,Initializable,TypedActor,Changeable,Debuggable,DebugListener,Derivable,Instantiable,ModelErrorHandler,MoMLExportable,Moveable,Nameable
- Direct Known Subclasses:
ParticleFilter,ParticleFilter
public abstract class AbstractParticleFilter extends TypedCompositeActor implements MapConstrained
Abstract Particle Filter Base Class.- Since:
- Ptolemy II 11.0
- Version:
- $Id$
- Author:
- Ilge Akkaya
- See Also:
ParticleFilter- Pt.AcceptedRating:
- Red (ilgea)
- Pt.ProposedRating:
- Red (ilgea)
-
-
Nested Class Summary
Nested Classes Modifier and Type Class Description protected static classAbstractParticleFilter.InputTypeType of user-added input-
Nested classes/interfaces inherited from class ptolemy.kernel.CompositeEntity
CompositeEntity.ContainedObjectsIterator
-
-
Field Summary
Fields Modifier and Type Field Description protected IORelation[]_inputRelationsArray of input Relations.protected java.lang.String[]_particleLabelsLabels of particles, that contains state names and a weight label.protected Type[]_particleTypesTypes of each particle dimension.protected double[][]_SigmaMeasurement covariance matrix.protected java.lang.String[]_stateLabelsLabels of states.protected ArrayToken_stateNamesCached State variable names.protected Type[]_stateTypesTypes of each state dimension.protected boolean_upToDateFlag indicating whether the contained model is up to date.ParameterbootstrapA boolean parameter that when set to true, implements the so-called bootstrap particle filter, where particles are resampled at each time step If this parameter is false, particles are resampled only when the effective sample size drops below 50% of the total number of particles.ParameterlowVarianceSamplerLow-variance resampler.protected static java.lang.StringMEASUREMENT_NOISENoise covariance identifier.protected static java.lang.StringMEASUREMENT_POSTFIXMeasurement variable postfix.ParameteroutputParticleCountNumber of output particles.ParameterparticleCountNumber of internal particles used to estimate the posterior distribution.TypedIOPortparticleOutputThe output port that outputs the produced particles at each firing.protected static java.lang.StringPRIOR_NAMEPrior distribution identifier.protected static java.lang.StringPROCESS_NOISEProcess Noise identifier.SharedParameterresetOnEachRunBoolean parameter to determine whether seeds are reset on each run.SharedParameterseedThe seed to be used for random token generation, to evaluate probabilistic transitions between states.protected static java.lang.StringSTATE_VARIABLE_NAMESState Variable names identifier.TypedIOPortstateEstimateState estimate output.ParametertThe value of current time.protected static java.lang.StringUPDATE_POSTFIXUpdate variable postfix.-
Fields inherited from class ptolemy.actor.CompositeActor
_actorFiringListeners, _causalityInterface, _derivedPiggybacks, _initializables, _notifyingActorFiring, _piggybacks, _publishedPorts, _publisherRelations, _stopRequested, _subscribedPorts
-
Fields inherited from class ptolemy.kernel.CompositeEntity
_levelCrossingLinks
-
Fields inherited from class ptolemy.kernel.util.NamedObj
_changeListeners, _changeLock, _changeRequests, _debugging, _debugListeners, _deferChangeRequests, _elementName, _isPersistent, _verbose, _workspace, ATTRIBUTES, CLASSNAME, COMPLETE, CONTENTS, DEEP, FULLNAME, LINKS
-
Fields inherited from interface ptolemy.actor.Executable
COMPLETED, NOT_READY, STOP_ITERATING
-
-
Constructor Summary
Constructors Constructor Description AbstractParticleFilter(CompositeEntity container, java.lang.String name)Construct the composite actor with a name and a container.AbstractParticleFilter(Workspace workspace)Construct a PF in the specified workspace with no container and an empty string as a name.
-
Method Summary
All Methods Instance Methods Abstract Methods Concrete Methods Modifier and Type Method Description protected abstract void_checkParameters()Check the dimensions of all parameters and ports.protected void_constrainParticles()Constrain particles within a map region if applicable.voidattributeChanged(Attribute attribute)If the argument is any parameter other than stateVariableNames t, or any parameter matching an input port, then request reinitialization.voidfire()Override the base class to first set the value of the parameter t to match current time, then to set the local parameters that mirror input values, and then to fire the contained actors.protected abstract AbstractParticleFilter.InputTypegetInputType(java.lang.String inputName)Get input type by name referenceprotected abstract ParametergetMeasurementParameter(java.lang.String fullName)Returns a parameter value corresponding to a measurement.protected java.lang.StringgetMeasurementParameterExpression(java.lang.String fullName)Get measurement parameter expression.protected abstract ParametergetNoiseParameter(java.lang.String inputName)Returns a parameter value corresponding to a noise distribution.protected abstract ParametergetUserDefinedParameter(java.lang.String parameterName)Return the Parameter that is part of a state space model.protected java.lang.StringgetUserDefinedParameterExpression(java.lang.String parameterName)Return the expression for a user-defined parameter.voidpreinitialize()Create the model inside from the parameter values.voidwrapup()If this actor is opaque, then invoke the wrapup() method of the local director.-
Methods inherited from class ptolemy.actor.TypedCompositeActor
_addEntity, _addPort, _addRelation, _checkTypesFromTo, _destinationTypeConstraints, attributeTypeChanged, isBackwardTypeInferenceEnabled, newPort, newRelation, resolveTypes, typeConstraintList, typeConstraints
-
Methods inherited from class ptolemy.actor.CompositeActor
_actorFiring, _actorFiring, _finishedAddEntity, _setDirector, _transferPortParameterInputs, addActorFiringListener, addInitializable, addPiggyback, clone, connectionsChanged, createReceivers, createSchedule, getCausalityInterface, getDirector, getExecutiveDirector, getManager, getPublishedPort, getPublishedPortChannel, getPublishedPorts, getSubscribedPortChannel, inferringWidths, inferWidths, initialize, inputPortList, isFireFunctional, isOpaque, isPublishedPort, isStrict, iterate, linkToPublishedPort, linkToPublishedPort, linkToPublishedPort, linkToPublishedPort, needsWidthInference, newInsideReceiver, newReceiver, notifyConnectivityChange, outputPortList, postfire, prefire, recordFiring, registerPublisherPort, registerPublisherPort, removeActorFiringListener, removeInitializable, removePiggyback, requestChange, setContainer, setDirector, setManager, stop, stopFire, terminate, unlinkToPublishedPort, unlinkToPublishedPort, unlinkToPublishedPort, unlinkToPublishedPort, unregisterPublisherPort, unregisterPublisherPort
-
Methods inherited from class ptolemy.kernel.CompositeEntity
_adjustDeferrals, _containedDecorators, _deepOpaqueEntityList, _description, _exportMoMLContents, _removeEntity, _removeRelation, _validateSettables, allAtomicEntityList, allowLevelCrossingConnect, classDefinitionList, connect, connect, containedObjectsIterator, deepCompositeEntityList, deepEntityList, deepGetEntities, deepNamedObjList, deepOpaqueEntityList, deepRelationSet, entityList, entityList, exportLinks, exportMoML, getAttribute, getEntities, getEntity, getPort, getRelation, getRelations, isAtomic, lazyAllAtomicEntityList, lazyAllCompositeEntityList, lazyAllCompositeTransparentAndOpaqueEntityList, lazyClassDefinitionList, lazyDeepEntityList, lazyEntityList, lazyRelationList, numberOfEntities, numberOfRelations, numEntities, numRelations, relationList, removeAllEntities, removeAllRelations, setClassDefinition, statistics, uniqueName
-
Methods inherited from class ptolemy.kernel.ComponentEntity
_checkContainer, _getContainedObject, _propagateExistence, getContainer, instantiate, moveDown, moveToFirst, moveToIndex, moveToLast, moveUp, propagateExistence, setName
-
Methods inherited from class ptolemy.kernel.Entity
_removePort, connectedPortList, connectedPorts, getPorts, linkedRelationList, linkedRelations, portList, removeAllPorts
-
Methods inherited from class ptolemy.kernel.InstantiableNamedObj
_setParent, getChildren, getElementName, getParent, getPrototypeList, isClassDefinition, isWithinClassDefinition
-
Methods inherited from class ptolemy.kernel.util.NamedObj
_addAttribute, _adjustOverride, _attachText, _cloneFixAttributeFields, _copyChangeRequestList, _debug, _debug, _debug, _debug, _debug, _executeChangeRequests, _getIndentPrefix, _isMoMLSuppressed, _markContentsDerived, _notifyHierarchyListenersAfterChange, _notifyHierarchyListenersBeforeChange, _propagateValue, _removeAttribute, _splitName, _stripNumericSuffix, addChangeListener, addDebugListener, addHierarchyListener, attributeDeleted, attributeList, attributeList, clone, decorators, deepContains, depthInHierarchy, description, description, event, executeChangeRequests, exportMoML, exportMoML, exportMoML, exportMoML, exportMoMLPlain, getAttribute, getAttributes, getChangeListeners, getClassName, getDecoratorAttribute, getDecoratorAttributes, getDerivedLevel, getDerivedList, getDisplayName, getFullName, getModelErrorHandler, getName, getName, getSource, handleModelError, isDeferringChangeRequests, isOverridden, isPersistent, lazyContainedObjectsIterator, message, notifyOfNameChange, propagateValue, propagateValues, removeAttribute, removeChangeListener, removeDebugListener, removeHierarchyListener, setClassName, setDeferringChangeRequests, setDerivedLevel, setDisplayName, setModelErrorHandler, setPersistent, setSource, sortContainedObjects, toplevel, toString, validateSettables, workspace
-
Methods inherited from class java.lang.Object
equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
-
Methods inherited from interface ptolemy.actor.Actor
createReceivers, getCausalityInterface, getDirector, getExecutiveDirector, getManager, inputPortList, newReceiver, outputPortList
-
Methods inherited from interface ptolemy.kernel.util.Derivable
getDerivedLevel, getDerivedList, propagateValue
-
Methods inherited from interface ptolemy.actor.Executable
isFireFunctional, isStrict, iterate, postfire, prefire, stop, stopFire, terminate
-
Methods inherited from interface ptolemy.actor.Initializable
addInitializable, initialize, removeInitializable
-
Methods inherited from interface org.ptolemy.ssm.MapConstrained
satisfiesMapConstraints
-
Methods inherited from interface ptolemy.kernel.util.Nameable
description, getContainer, getDisplayName, getFullName, getName, getName, setName
-
-
-
-
Field Detail
-
bootstrap
public Parameter bootstrap
A boolean parameter that when set to true, implements the so-called bootstrap particle filter, where particles are resampled at each time step If this parameter is false, particles are resampled only when the effective sample size drops below 50% of the total number of particles.
-
lowVarianceSampler
public Parameter lowVarianceSampler
Low-variance resampler.
-
particleCount
public Parameter particleCount
Number of internal particles used to estimate the posterior distribution.
-
outputParticleCount
public Parameter outputParticleCount
Number of output particles.
-
particleOutput
public TypedIOPort particleOutput
The output port that outputs the produced particles at each firing.
-
stateEstimate
public TypedIOPort stateEstimate
State estimate output. A record token with one field per state variable
-
t
public Parameter t
The value of current time. This parameter is not visible in the expression screen except in expert mode. Its value initially is just 0.0, a double, but upon each firing, it is given a value equal to the current time as reported by the director.
-
resetOnEachRun
public SharedParameter resetOnEachRun
Boolean parameter to determine whether seeds are reset on each run.
-
seed
public SharedParameter seed
The seed to be used for random token generation, to evaluate probabilistic transitions between states.
-
_upToDate
protected boolean _upToDate
Flag indicating whether the contained model is up to date.
-
_stateNames
protected ArrayToken _stateNames
Cached State variable names.
-
_inputRelations
protected IORelation[] _inputRelations
Array of input Relations.
-
_particleLabels
protected java.lang.String[] _particleLabels
Labels of particles, that contains state names and a weight label.
-
_particleTypes
protected Type[] _particleTypes
Types of each particle dimension.
-
_stateLabels
protected java.lang.String[] _stateLabels
Labels of states.
-
_stateTypes
protected Type[] _stateTypes
Types of each state dimension.
-
_Sigma
protected double[][] _Sigma
Measurement covariance matrix.
-
STATE_VARIABLE_NAMES
protected static final java.lang.String STATE_VARIABLE_NAMES
State Variable names identifier.- See Also:
- Constant Field Values
-
PROCESS_NOISE
protected static final java.lang.String PROCESS_NOISE
Process Noise identifier.- See Also:
- Constant Field Values
-
MEASUREMENT_NOISE
protected static final java.lang.String MEASUREMENT_NOISE
Noise covariance identifier.- See Also:
- Constant Field Values
-
UPDATE_POSTFIX
protected static final java.lang.String UPDATE_POSTFIX
Update variable postfix.- See Also:
- Constant Field Values
-
MEASUREMENT_POSTFIX
protected static final java.lang.String MEASUREMENT_POSTFIX
Measurement variable postfix.- See Also:
- Constant Field Values
-
PRIOR_NAME
protected static final java.lang.String PRIOR_NAME
Prior distribution identifier.- See Also:
- Constant Field Values
-
-
Constructor Detail
-
AbstractParticleFilter
public AbstractParticleFilter(CompositeEntity container, java.lang.String name) throws NameDuplicationException, IllegalActionException
Construct the composite actor with a name and a container. This constructor creates the ports, parameters, and the icon.- Parameters:
container- The container.name- The name.- Throws:
NameDuplicationException- If another entity already had this name.IllegalActionException- If there was an internal problem.
-
AbstractParticleFilter
public AbstractParticleFilter(Workspace workspace) throws IllegalActionException, NameDuplicationException
Construct a PF in the specified workspace with no container and an empty string as a name. You can then change the name with setName(). If the workspace argument is null, then use the default workspace.- Parameters:
workspace- The workspace that will list the actor.- Throws:
IllegalActionException- If the name has a period in it, or the director is not compatible with the specified container.NameDuplicationException- If the container already contains an entity with the specified name.
-
-
Method Detail
-
attributeChanged
public void attributeChanged(Attribute attribute) throws IllegalActionException
If the argument is any parameter other than stateVariableNames t, or any parameter matching an input port, then request reinitialization.- Overrides:
attributeChangedin classTypedCompositeActor- Parameters:
attribute- The attribute that changed.- Throws:
IllegalActionException- If the numerator and the denominator matrix is not a row vector.
-
fire
public void fire() throws IllegalActionExceptionOverride the base class to first set the value of the parameter t to match current time, then to set the local parameters that mirror input values, and then to fire the contained actors.- Specified by:
firein interfaceExecutable- Overrides:
firein classCompositeActor- Throws:
IllegalActionException- If there is no director, or if the director's fire() method throws it, or if the actor is not opaque.
-
preinitialize
public void preinitialize() throws IllegalActionExceptionCreate the model inside from the parameter values. This method gets write access on the workspace.- Specified by:
preinitializein interfaceInitializable- Overrides:
preinitializein classCompositeActor- Throws:
IllegalActionException- If there is no director, or if any contained actors throws it in its preinitialize() method.
-
getInputType
protected abstract AbstractParticleFilter.InputType getInputType(java.lang.String inputName)
Get input type by name reference- Parameters:
inputName- The name of the input- Returns:
- an InputType object indicating the type of input
-
wrapup
public void wrapup() throws IllegalActionExceptionDescription copied from class:CompositeActorIf this actor is opaque, then invoke the wrapup() method of the local director. This method is read-synchronized on the workspace.- Specified by:
wrapupin interfaceInitializable- Overrides:
wrapupin classCompositeActor- Throws:
IllegalActionException- If there is no director, or if the director's wrapup() method throws it, or if this actor is not opaque.
-
_checkParameters
protected abstract void _checkParameters() throws IllegalActionExceptionCheck the dimensions of all parameters and ports.- Throws:
IllegalActionException- If the dimensions are illegal.
-
getUserDefinedParameterExpression
protected java.lang.String getUserDefinedParameterExpression(java.lang.String parameterName) throws IllegalActionExceptionReturn the expression for a user-defined parameter.- Parameters:
parameterName- Name of parameter- Returns:
- parameter expression
- Throws:
IllegalActionException
-
getUserDefinedParameter
protected abstract Parameter getUserDefinedParameter(java.lang.String parameterName) throws IllegalActionException
Return the Parameter that is part of a state space model.- Parameters:
parameterName- Name of parameter- Returns:
- Parameter object
- Throws:
IllegalActionException
-
getMeasurementParameterExpression
protected java.lang.String getMeasurementParameterExpression(java.lang.String fullName) throws IllegalActionExceptionGet measurement parameter expression.- Parameters:
fullName- Name of the measurement Parameter- Returns:
- A string expression
- Throws:
IllegalActionException
-
getMeasurementParameter
protected abstract Parameter getMeasurementParameter(java.lang.String fullName) throws IllegalActionException
Returns a parameter value corresponding to a measurement.- Parameters:
fullName- Name of measurement parameter- Returns:
- a Parameter object that by name reference corresponds to a specific measurement.
- Throws:
IllegalActionException
-
getNoiseParameter
protected abstract Parameter getNoiseParameter(java.lang.String inputName) throws IllegalActionException
Returns a parameter value corresponding to a noise distribution.- Parameters:
inputName- Name of noise parameter- Returns:
- a Parameter object that by name reference corresponds to a specific noise distribution
- Throws:
IllegalActionException
-
_constrainParticles
protected void _constrainParticles()
Constrain particles within a map region if applicable.
-
-