001/* 002 * Copyright (c) 2010 The Regents of the University of California. 003 * All rights reserved. 004 * 005 * '$Author: berkley $' 006 * '$Date: 2010-04-28 00:12:36 +0000 (Wed, 28 Apr 2010) $' 007 * '$Revision: 24000 $' 008 * 009 * Permission is hereby granted, without written agreement and without 010 * license or royalty fees, to use, copy, modify, and distribute this 011 * software and its documentation for any purpose, provided that the above 012 * copyright notice and the following two paragraphs appear in all copies 013 * of this software. 014 * 015 * IN NO EVENT SHALL THE UNIVERSITY OF CALIFORNIA BE LIABLE TO ANY PARTY 016 * FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES 017 * ARISING OUT OF THE USE OF THIS SOFTWARE AND ITS DOCUMENTATION, EVEN IF 018 * THE UNIVERSITY OF CALIFORNIA HAS BEEN ADVISED OF THE POSSIBILITY OF 019 * SUCH DAMAGE. 020 * 021 * THE UNIVERSITY OF CALIFORNIA SPECIFICALLY DISCLAIMS ANY WARRANTIES, 022 * INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF 023 * MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE SOFTWARE 024 * PROVIDED HEREUNDER IS ON AN "AS IS" BASIS, AND THE UNIVERSITY OF 025 * CALIFORNIA HAS NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, 026 * ENHANCEMENTS, OR MODIFICATIONS. 027 * 028 */ 029 030package org.ecoinformatics.seek.R; 031 032import org.rosuda.JRI.RMainLoopCallbacks; 033import org.rosuda.JRI.Rengine; 034 035/** 036 * A simple buffering console that is used to cache the output from an R session 037 * and then can be used to return the console output as a string. 038 * 039 * @author Matt Jones 040 */ 041public class RConsole implements RMainLoopCallbacks { 042 /** 043 * A buffer which caches the output of the R session standard output. 044 */ 045 private StringBuffer consoleText = null; 046 047 /** 048 * Construct the R Console class and initialize the buffer containing the 049 * text. 050 */ 051 public RConsole() { 052 super(); 053 consoleText = new StringBuffer(); 054 } 055 056 public void clear() { 057 consoleText = new StringBuffer(); 058 } 059 060 /** 061 * After an R session has ended, get a String representation of the output 062 * of the R session. 063 * 064 * @return String containing the text of the R session output 065 */ 066 public String getConsoleOutput() { 067 return consoleText.toString(); 068 } 069 070 /** 071 * Callback that is called when text is available from the R Engine and 072 * should be written to the console. 073 */ 074 public void rWriteConsole(Rengine re, String text, int oType) { 075 consoleText.append(text); 076 } 077 078 // 079 // The remaining callback methods are not used, but need to have 080 // implementations to satisfy the interface definition. 081 // 082 public void rBusy(Rengine re, int which) { 083 System.out.println("rBusy(" + which + ")"); 084 } 085 086 public String rReadConsole(Rengine re, String prompt, int addToHistory) { 087 return null; 088 } 089 090 public void rShowMessage(Rengine re, String message) { 091 System.out.println("rShowMessage \"" + message + "\""); 092 } 093 094 public String rChooseFile(Rengine re, int newFile) { 095 return ""; 096 } 097 098 public void rFlushConsole(Rengine re) { 099 } 100 101 public void rLoadHistory(Rengine re, String filename) { 102 } 103 104 public void rSaveHistory(Rengine re, String filename) { 105 } 106}